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the workflow and CI system for my GitHub repos","workspace_dir","/workspace","agent_network_access",{"_286":287,"_288":80,"_289":290,"_291":-5,"_292":-5,"_293":-5},"codex_github_direct","github_connector_id","enable_gitlab_webhooks","repos",[244],"setup",[285],"maintenance_setup",[285],"repo_map",{"_244":245},"env_vars",{"_226":227,"_228":229,"_230":231,"_232":233,"_234":235,"_236":237,"_238":239,"_240":241,"_242":243},"secrets",{},"secrets_with_domains","task_count",133,"creator_id","user-5ZKnECQNTRTorYuavfTvQlgZ","share_settings","workspace","share_targets",[],1765943941.570843,"auto_setup_settings",{"_225":18},"cache_settings",{"_222":70,"_223":224},"etag","\"6400a07d-0000-0200-0000-694bbd200000\"","enable_authtranslator","enable_docker_in_docker","post_setup_cache_enabled","cache_invalidation_key","","use_auto_setup","CODEX_ENV_PYTHON_VERSION","3.12","CODEX_ENV_NODE_VERSION","20","CODEX_ENV_RUBY_VERSION","3.4.4","CODEX_ENV_RUST_VERSION","1.89.0","CODEX_ENV_GO_VERSION","1.24.3","CODEX_ENV_BUN_VERSION","1.2.14","CODEX_ENV_PHP_VERSION","8.4","CODEX_ENV_JAVA_VERSION","21","CODEX_ENV_SWIFT_VERSION","6.1","github-1117447156",{"_53":246,"_162":247,"_248":249,"_250":181,"_251":252,"_253":254,"_255":256,"_257":258,"_259":260,"_261":75,"_262":-5,"_263":-5,"_264":-5,"_265":-5,"_266":-5,"_267":-5,"_268":-5,"_269":270,"_271":-5,"_66":272},"1117447156","Workflows","owner",{"_277":278,"_53":279,"_104":280,"_281":282,"_283":284},"repository_full_name","clone_url","https://github.com/stranske/Workflows.git","default_branch","main","git_commits_url","https://api.github.com/repos/stranske/Workflows/git/commits{/sha}","git_refs_url","https://api.github.com/repos/stranske/Workflows/git/refs{/sha}","git_url","git://github.com/stranske/Workflows.git","visibility","archived","allow_auto_merge","allow_merge_commit","allow_rebase_merge","allow_squash_merge","allow_update_branch","language","size",1216,"master_branch",{"_273":18,"_274":18,"_275":18,"_276":18},"admin","maintain","push","pull","login","stranske",23046322,"User","avatar_url","https://avatars.githubusercontent.com/u/23046322?v=4","url","https://api.github.com/users/stranske","#!/usr/bin/env bash\nset -euo pipefail\n\nLOG_PREFIX=\"[workflows-codex-env]\"\nlog() { printf \"%s %s\\n\" \"$LOG_PREFIX\" \"$*\"; }\nwarn() { printf \"%s [warn] %s\\n\" \"$LOG_PREFIX\" \"$*\" >&2; }\ndie() { printf \"%s [error] %s\\n\" \"$LOG_PREFIX\" \"$*\" >&2; exit 1; }\n\n# -----------------------------\n# Locate Workflows repo root robustly (Codex scripts run from /tmp)\n# -----------------------------\nis_workflows_root() {\n local d=\"$1\"\n [[ -f \"${d}/pyproject.toml\" ]] || return 1\n [[ -f \"${d}/scripts/dev_check.sh\" ]] || return 1\n grep -q 'name = \"workflows\"' \"${d}/pyproject.toml\" 2>/dev/null || return 1\n return 0\n}\n\nfind_repo_root() {\n # 1) Prefer git root, but verify it's the Workflows repo.\n if command -v git >/dev/null 2>&1; then\n if git rev-parse --show-toplevel >/dev/null 2>&1; then\n local gr\n gr=\"$(git rev-parse --show-toplevel)\"\n if is_workflows_root \"${gr}\"; then\n echo \"${gr}\"\n return 0\n fi\n fi\n fi\n\n # 2) Walk upwards from current directory.\n local d=\"${PWD}\"\n while [[ \"${d}\" != \"/\" ]]; do\n if is_workflows_root \"${d}\"; then\n echo \"${d}\"\n return 0\n fi\n d=\"$(dirname \"${d}\")\"\n done\n\n # 3) Last resort: search common mount points.\n local bases=(\"${PWD}\" \"${GITHUB_WORKSPACE:-}\" \"/workspace\" \"/repo\" \"${HOME:-/home}\" \"/tmp\")\n local b\n for b in \"${bases[@]}\"; do\n [[ -n \"${b}\" && -d \"${b}\" ]] || continue\n while IFS= read -r py; do\n local cand\n cand=\"$(cd \"$(dirname \"${py}\")\" && pwd)\"\n if is_workflows_root \"${cand}\"; then\n echo \"${cand}\"\n return 0\n fi\n done < <(find \"${b}\" -maxdepth 5 -type f -name pyproject.toml 2>/dev/null | head -n 100)\n done\n\n return 1\n}\n\nREPO_ROOT=\"$(find_repo_root || true)\"\n[[ -n \"${REPO_ROOT}\" ]] || die \"Could not locate Workflows repo root (pyproject.toml + scripts/dev_check.sh + name='workflows').\"\n\ncd \"${REPO_ROOT}\"\nlog \"Repo root: ${REPO_ROOT}\"\n\n# Git sanity (best-effort)\nif command -v git >/dev/null 2>&1; then\n git config --global --add safe.directory \"${REPO_ROOT}\" >/dev/null 2>&1 || true\n git config --global user.name \"${GIT_AUTHOR_NAME:-Codex}\" >/dev/null 2>&1 || true\n git config --global user.email \"${GIT_AUTHOR_EMAIL:-codex@users.noreply.github.com}\" >/dev/null 2>&1 || true\nfi\n\n# -----------------------------\n# Python + venv (repo requires 3.11+)\n# -----------------------------\nPYTHON_BIN=\"${PYTHON_BIN:-python3}\"\ncommand -v \"${PYTHON_BIN}\" >/dev/null 2>&1 || die \"python3 not found on PATH.\"\n\n\"${PYTHON_BIN}\" - <<'PY'\nimport sys\nif sys.version_info < (3, 11):\n raise SystemExit(f\"Python 3.11+ required; found {sys.version.split()[0]}\")\nprint(\"Python OK:\", sys.version.split()[0])\nPY\n\nVENV_PATH=\"${REPO_ROOT}/.venv\"\nif [[ ! -d \"${VENV_PATH}\" ]]; then\n log \"Creating venv at ${VENV_PATH}\"\n \"${PYTHON_BIN}\" -m venv \"${VENV_PATH}\"\nfi\n# shellcheck disable=SC1091\nsource \"${VENV_PATH}/bin/activate\"\n\npython -m pip install -U pip setuptools wheel >/dev/null\n\n# -----------------------------\n# Optional lockfile sync (if present)\n# -----------------------------\npython -m pip install -U uv >/dev/null || true\n\nLOCK_FILE=\"${REPO_ROOT}/requirements.lock\"\nif [[ -f \"${LOCK_FILE}\" ]]; then\n log \"Found requirements.lock; syncing with uv (best-effort)\"\n uv pip sync \"${LOCK_FILE}\" || true\nelse\n log \"No requirements.lock found (expected for this repo).\"\nfi\n\n# -----------------------------\n# Install pyproject dependencies + dev extras WITHOUT installing the repo itself\n# (Avoids editable-build failure due to flat-layout multiple top-level packages.)\n# -----------------------------\nlog \"Installing deps + dev tools from pyproject.toml (no editable install)...\"\npython - <<'PY'\nfrom __future__ import annotations\nfrom pathlib import Path\nimport subprocess, sys\n\ntry:\n import tomllib # py3.11+\nexcept ModuleNotFoundError:\n subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"tomli\"])\n import tomli as tomllib # type: ignore\n\ndata = tomllib.loads(Path(\"pyproject.toml\").read_text(encoding=\"utf-8\"))\nproj = data.get(\"project\", {}) or {}\n\ndeps = list(proj.get(\"dependencies\", []) or [])\ndev = list((proj.get(\"optional-dependencies\", {}) or {}).get(\"dev\", []) or [])\n\n# de-dup while preserving order\nseen = set()\npkgs = []\nfor p in deps + dev:\n if p not in seen:\n pkgs.append(p)\n seen.add(p)\n\nif pkgs:\n subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", *pkgs])\nelse:\n print(\"[workflows-codex-env] [warn] No dependencies/dev extras found in pyproject.toml.\")\nPY\n\n# -----------------------------\n# Ensure required test packages (the ones your checker flags as missing)\n# -----------------------------\nlog \"Ensuring required test packages are installed...\"\npython - <<'PY'\nimport importlib, subprocess, sys\n\nrequired = {\n \"pytest\": \"pytest\",\n \"coverage\": \"coverage\",\n \"hypothesis\": \"hypothesis\",\n \"pandas\": \"pandas\",\n \"numpy\": \"numpy\",\n \"pydantic\": \"pydantic\",\n \"yaml\": \"PyYAML\",\n \"requests\": \"requests\",\n \"jsonschema\": \"jsonschema\",\n}\n\nmissing = []\nfor mod, pkg in required.items():\n try:\n importlib.import_module(mod)\n except Exception:\n missing.append(pkg)\n\nif missing:\n print(\"[workflows-codex-env] Installing missing:\", \" \".join(missing))\n subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", *missing])\nelse:\n print(\"[workflows-codex-env] Required packages already present.\")\nPY\n\n# -----------------------------\n# Make local modules importable (agents/, templates/, etc.)\n# -----------------------------\nexport PYTHONPATH=\"${REPO_ROOT}${PYTHONPATH:+:${PYTHONPATH}}\"\n\n# Persist env for interactive shells (best-effort)\nMARKER=\"# >>> Workflows Codex env >>>\"\nif [[ -w \"${HOME}/.bashrc\" ]] && ! grep -qs \"${MARKER}\" \"${HOME}/.bashrc\"; then\n {\n echo \"\"\n echo \"${MARKER}\"\n echo \"export WORKFLOWS_REPO_ROOT=\\\"${REPO_ROOT}\\\"\"\n echo \"export VIRTUAL_ENV=\\\"${REPO_ROOT}/.venv\\\"\"\n echo \"export PATH=\\\"${REPO_ROOT}/.venv/bin:\\$PATH\\\"\"\n echo \"export PYTHONPATH=\\\"${REPO_ROOT}\\${PYTHONPATH:+:\\$PYTHONPATH}\\\"\"\n echo \"# <<< Workflows Codex env <<<\"\n } >> \"${HOME}/.bashrc\" || true\nfi\n\n# -----------------------------\n# Optional: run repo dependency checker (should be clean now; don't brick setup if it isn't)\n# -----------------------------\nif [[ -x \"${REPO_ROOT}/scripts/check_test_dependencies.sh\" ]]; then\n log \"Running scripts/check_test_dependencies.sh (non-fatal)\"\n bash \"${REPO_ROOT}/scripts/check_test_dependencies.sh\" || true\nfi\n\nlog \"Setup complete. Common next commands:\"\nlog \" ./scripts/dev_check.sh\"\nlog \" ./scripts/validate_fast.sh\"\n","mode","on","preset_allowlist","allowlist_domains","pypi.org, github.com, files.pythonhosted.org, deb.debian.org, security.ubuntu.com, raw.githubusercontent.com","allowlist_rules","denylist_domains","safe_methods_only","number",98,"https://github.com/stranske/Workflows/pull/98","state","closed","merged","mergeable","draft","title","Add keepalive loop metrics emission","body","## Summary\n- capture workflow start timestamp and compute keepalive iteration metrics\n- emit structured keepalive metrics to GITHUB_STEP_SUMMARY and append ndjson records\n- persist keepalive metrics artifact with 30-day retention for later aggregation\n\n## Testing\n- python - <<'PY'\\nimport yaml\\npath='.github/workflows/agents-keepalive-loop.yml'\\nwith open(path, 'r', encoding='utf-8') as f:\\n yaml.safe_load(f)\\nprint('ok')\\nPY\n\n------\n[Codex Task](https://chatgpt.com/codex/tasks/task_e_694bbd342388833188ec8c34423f5a72)","base","head","base_sha","f632427daf3ad01088ceb2a029aa8926f2fc50c8","head_sha","c4c87eb1751ea0ad329977be1268712c23bf281e","head_repo_id","head_repo_full_name","merge_commit_sha","e45db7b9b238073d199f358c7fd8f727409ea225","comments","diff","user",{"_277":278,"_162":278,"_327":-5,"_281":282,"_53":279},"commits",2,"changed_files",1,"additions",79,"deletions","email","events",[],[],"messages",[],{"_104":545,"_546":303,"_547":548,"_549":550,"_551":-5},{"_104":523,"_108":105,"_350":524},{"_104":336,"_337":338},"partial_repo_snapshot","files",[339],{"_340":341,"_342":-5,"_343":344,"_345":-5},"path",".github/workflows/agents-keepalive-loop.yml","contents","line_range_contents",[346],"missing_reason",{"_347":323,"_348":349,"_350":351,"_352":70},"line_range_start","line_range_end",197,"content",[353,224,354,355,356,357,358,359,360,224,361,362,363,364,224,365,366,367,224,368,369,370,371,372,373,374,375,376,377,378,379,380,381,382,383,384,385,386,387,388,389,390,224,391,392,393,224,394,395,396,397,398,399,400,401,402,403,404,405,406,407,408,409,410,411,412,413,414,415,416,417,418,419,224,420,421,422,423,424,425,426,427,428,429,430,431,432,224,433,434,435,436,437,438,371,372,388,389,390,224,439,440,441,442,443,444,445,446,447,448,449,450,451,452,224,453,454,455,456,457,458,459,224,460,461,462,463,464,465,224,466,467,468,469,470,471,472,473,474,475,476,477,478,479,480,481,482,483,484,224,485,486,487,488,489,490,491,492,493,494,495,496,497,498,224,499,224,500,501,397,502,503,504,505,224,506,396,397,398,399,507,508,509,510,511,512,513,514,515,516,517,518,519,520,521,416,522],"contains_end_of_file","name: Agents Keepalive Loop","on:"," workflow_run:"," workflows: [\"Gate\"]"," types: [completed]"," pull_request:"," types:"," - labeled","permissions:"," contents: write"," pull-requests: write"," actions: write","concurrency:"," group: keepalive-${{ github.event.workflow_run.pull_requests[0].number || github.event.pull_request.number || github.run_id }}"," cancel-in-progress: false","jobs:"," evaluate:"," name: Evaluate keepalive loop"," runs-on: ubuntu-latest"," environment: agent-standard"," outputs:"," pr_number: ${{ steps.evaluate.outputs.pr_number }}"," action: ${{ steps.evaluate.outputs.action }}"," reason: ${{ steps.evaluate.outputs.reason }}"," gate_conclusion: ${{ steps.evaluate.outputs.gate_conclusion }}"," iteration: ${{ steps.evaluate.outputs.iteration }}"," max_iterations: ${{ steps.evaluate.outputs.max_iterations }}"," failure_threshold: ${{ steps.evaluate.outputs.failure_threshold }}"," tasks_total: ${{ steps.evaluate.outputs.tasks_total }}"," tasks_unchecked: ${{ steps.evaluate.outputs.tasks_unchecked }}"," keepalive_enabled: ${{ steps.evaluate.outputs.keepalive_enabled }}"," autofix_enabled: ${{ steps.evaluate.outputs.autofix_enabled }}"," has_agent_label: ${{ steps.evaluate.outputs.has_agent_label }}"," trace: ${{ steps.evaluate.outputs.trace }}"," start_ts: ${{ steps.timestamps.outputs.start_ts }}"," steps:"," - name: Checkout"," uses: actions/checkout@v4"," - name: Capture timestamps"," id: timestamps"," run: echo \"start_ts=$(date -u +%s)\" >> \"$GITHUB_OUTPUT\""," - name: Evaluate keepalive state"," id: evaluate"," uses: actions/github-script@v7"," with:"," github-token: ${{ secrets.GITHUB_TOKEN }}"," script: |"," const { evaluateKeepaliveLoop } = require('./.github/scripts/keepalive_loop.js');"," const result = await evaluateKeepaliveLoop({ github, context, core });"," const output = {"," pr_number: String(result.prNumber || ''),"," action: result.action || '',"," reason: result.reason || '',"," gate_conclusion: result.gateConclusion || '',"," iteration: String(result.iteration ?? ''),"," max_iterations: String(result.maxIterations ?? ''),"," failure_threshold: String(result.failureThreshold ?? ''),"," tasks_total: String(result.checkboxCounts?.total ?? ''),"," tasks_unchecked: String(result.checkboxCounts?.unchecked ?? ''),"," keepalive_enabled: String(result.keepaliveEnabled ?? ''),"," autofix_enabled: String(result.config?.autofix_enabled ?? ''),"," has_agent_label: String(result.hasAgentLabel ?? ''),"," trace: String(result.config?.trace || result.state?.trace || ''),"," };"," for (const [key, value] of Object.entries(output)) {"," core.setOutput(key, value);"," }"," run-codex:"," name: Keepalive next task"," needs: evaluate"," if: needs.evaluate.outputs.action == 'run'"," uses: ./.github/workflows/reusable-codex-run.yml"," secrets: inherit"," with:"," prompt_file: .github/codex/prompts/keepalive_next_task.md"," mode: keepalive"," pr_number: ${{ needs.evaluate.outputs.pr_number }}"," concurrency:"," group: keepalive-${{ needs.evaluate.outputs.pr_number }}"," cancel-in-progress: false"," summary:"," name: Update keepalive summary"," needs:"," - evaluate"," - run-codex"," if: always() && needs.evaluate.outputs.pr_number != '' && needs.evaluate.outputs.pr_number != '0'"," - name: Emit keepalive metrics"," id: keepalive-metrics"," env:"," PR_NUMBER: ${{ needs.evaluate.outputs.pr_number }}"," ACTION: ${{ needs.evaluate.outputs.action }}"," REASON: ${{ needs.evaluate.outputs.reason }}"," GATE_CONCLUSION: ${{ needs.evaluate.outputs.gate_conclusion }}"," ITERATION: ${{ needs.evaluate.outputs.iteration }}"," MAX_ITERATIONS: ${{ needs.evaluate.outputs.max_iterations }}"," TASKS_TOTAL: ${{ needs.evaluate.outputs.tasks_total }}"," TASKS_UNCHECKED: ${{ needs.evaluate.outputs.tasks_unchecked }}"," START_TS: ${{ needs.evaluate.outputs.start_ts }}"," run: |"," set -euo pipefail"," now=$(date -u +%s)"," if [[ \"${START_TS:-}\" =~ ^[0-9]+$ ]]; then"," duration=$(( now - START_TS ))"," if [ \"$duration\" -lt 0 ]; then duration=0; fi"," else"," duration=0"," fi"," tasks_total=${TASKS_TOTAL:-0}"," tasks_unchecked=${TASKS_UNCHECKED:-0}"," if ! [[ \"$tasks_total\" =~ ^-?[0-9]+$ ]]; then tasks_total=0; fi"," if ! [[ \"$tasks_unchecked\" =~ ^-?[0-9]+$ ]]; then tasks_unchecked=0; fi"," tasks_completed=$(( tasks_total - tasks_unchecked ))"," if [ \"$tasks_completed\" -lt 0 ]; then tasks_completed=0; fi"," metrics_json=$(jq -n \\"," --arg pr \"${PR_NUMBER:-0}\" \\"," --arg iteration \"${ITERATION:-0}\" \\"," --arg action \"${ACTION:-}\" \\"," --arg stop_reason \"${REASON:-}\" \\"," --arg gate_conclusion \"${GATE_CONCLUSION:-}\" \\"," --arg tasks_total \"$tasks_total\" \\"," --arg tasks_completed \"$tasks_completed\" \\"," --arg duration \"$duration\" \\"," '{"," pr_number: ($pr | tonumber? // 0),"," iteration_count: ($iteration | tonumber? // 0),"," action: $action,"," stop_reason: $stop_reason,"," gate_conclusion: $gate_conclusion,"," tasks_total: ($tasks_total | tonumber? // 0),"," tasks_completed: ($tasks_completed | tonumber? // 0),"," duration_seconds: ($duration | tonumber? // 0)"," }')"," {"," echo '### Keepalive metrics'"," echo ''"," echo '| Field | Value |'"," echo '| --- | --- |'"," echo \"| pr_number | $(echo \"$metrics_json\" | jq -r '.pr_number') |\""," echo \"| iteration_count | $(echo \"$metrics_json\" | jq -r '.iteration_count') |\""," echo \"| action | $(echo \"$metrics_json\" | jq -r '.action') |\""," echo \"| stop_reason | $(echo \"$metrics_json\" | jq -r '.stop_reason') |\""," echo \"| gate_conclusion | $(echo \"$metrics_json\" | jq -r '.gate_conclusion') |\""," echo \"| tasks_total | $(echo \"$metrics_json\" | jq -r '.tasks_total') |\""," echo \"| tasks_completed | $(echo \"$metrics_json\" | jq -r '.tasks_completed') |\""," echo \"| duration_seconds | $(echo \"$metrics_json\" | jq -r '.duration_seconds') |\""," } >> \"$GITHUB_STEP_SUMMARY\""," echo \"$metrics_json\" >> keepalive-metrics.ndjson"," - name: Upload keepalive metrics artifact"," uses: actions/upload-artifact@v4"," name: keepalive-metrics"," path: keepalive-metrics.ndjson"," retention-days: 30"," if-no-files-found: error"," - name: Update summary comment"," const { updateKeepaliveLoopSummary } = require('./.github/scripts/keepalive_loop.js');"," const inputs = {"," pr_number: Number('${{ needs.evaluate.outputs.pr_number }}') || 0,"," action: '${{ needs.evaluate.outputs.action }}',"," reason: '${{ needs.evaluate.outputs.reason }}',"," gate_conclusion: '${{ needs.evaluate.outputs.gate_conclusion }}',"," iteration: Number('${{ needs.evaluate.outputs.iteration }}') || 0,"," max_iterations: Number('${{ needs.evaluate.outputs.max_iterations }}') || 0,"," failure_threshold: Number('${{ needs.evaluate.outputs.failure_threshold }}') || 3,"," tasks_total: Number('${{ needs.evaluate.outputs.tasks_total }}') || 0,"," tasks_unchecked: Number('${{ needs.evaluate.outputs.tasks_unchecked }}') || 0,"," keepalive_enabled: '${{ needs.evaluate.outputs.keepalive_enabled }}',"," autofix_enabled: '${{ needs.evaluate.outputs.autofix_enabled }}',"," trace: '${{ needs.evaluate.outputs.trace }}',"," run_result: '${{ needs.run-codex.result }}',"," await updateKeepaliveLoopSummary({ github, context, core, inputs });","message",[525,526,527,528,529,530,531],{"_532":57,"_57":544},{"_532":538,"_340":341,"_347":542,"_348":543},{"_532":57,"_57":541},{"_532":538,"_340":341,"_347":539,"_348":540},{"_532":57,"_57":537},{"_532":534,"_535":536,"_347":323,"_348":323},{"_532":57,"_57":533},"content_type","\n\n#### Tasks\n- [x] Add metrics emission to keepalive-loop workflow:\n- [x] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [x] Write to GITHUB_STEP_SUMMARY in structured format\n- [x] Append to metrics artifact (ndjson format)\n- [ ] Add metrics emission to autofix-loop workflow:\n- [ ] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [ ] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\n#### Acceptance criteria\n- [ ] - Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n- [ ] - Metrics are persisted as artifacts for at least 30 days.\n- [ ] - Weekly summary report is automatically generated and posted.\n- [ ] - Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"","terminal_chunk_citation","terminal_chunk_id","89237b","\n\n**Testing**\n* ✅ `python - <<'PY'\\nimport yaml\\npath='.github/workflows/agents-keepalive-loop.yml'\\nwith open(path, 'r', encoding='utf-8') as f:\\n yaml.safe_load(f)\\nprint('ok')\\nPY` ","repo_file_citation",89,175,"\n* Added a metrics emission step that writes structured keepalive metrics to the step summary, records NDJSON, and uploads a 30-day retention artifact for later aggregation.",20,74,"**Summary**\n* Captured keepalive-loop runtime start timestamp to support duration reporting downstream outputs.","pr","pr_title","pr_message","## Summary\n- capture workflow start timestamp and compute keepalive iteration metrics\n- emit structured keepalive metrics to GITHUB_STEP_SUMMARY and append ndjson records\n- persist keepalive metrics artifact with 30-day retention for later aggregation\n\n## Testing\n- python - <<'PY'\\nimport yaml\\npath='.github/workflows/agents-keepalive-loop.yml'\\nwith open(path, 'r', encoding='utf-8') as f:\\n yaml.safe_load(f)\\nprint('ok')\\nPY","output_diff",{"_104":549,"_552":181,"_139":140,"_553":-5,"_317":554,"_555":556,"_557":323,"_558":559,"_560":43,"_561":562,"_563":-5},"pre_apply_patch","repo_id","preapply_patch_base_commit_sha","diff --git a/.github/workflows/agents-keepalive-loop.yml b/.github/workflows/agents-keepalive-loop.yml\nindex 7fb3d7e7c66a31cfcb89c6d40818145761e39716..b7d50e33dea7c5fd9a49d3b0d94101a1ab8a21e1 100644\n--- a/.github/workflows/agents-keepalive-loop.yml\n+++ b/.github/workflows/agents-keepalive-loop.yml\n@@ -14,54 +14,59 @@ permissions:\n actions: write\n \n concurrency:\n group: keepalive-${{ github.event.workflow_run.pull_requests[0].number || github.event.pull_request.number || github.run_id }}\n cancel-in-progress: false\n \n jobs:\n evaluate:\n name: Evaluate keepalive loop\n runs-on: ubuntu-latest\n environment: agent-standard\n outputs:\n pr_number: ${{ steps.evaluate.outputs.pr_number }}\n action: ${{ steps.evaluate.outputs.action }}\n reason: ${{ steps.evaluate.outputs.reason }}\n gate_conclusion: ${{ steps.evaluate.outputs.gate_conclusion }}\n iteration: ${{ steps.evaluate.outputs.iteration }}\n max_iterations: ${{ steps.evaluate.outputs.max_iterations }}\n failure_threshold: ${{ steps.evaluate.outputs.failure_threshold }}\n tasks_total: ${{ steps.evaluate.outputs.tasks_total }}\n tasks_unchecked: ${{ steps.evaluate.outputs.tasks_unchecked }}\n keepalive_enabled: ${{ steps.evaluate.outputs.keepalive_enabled }}\n autofix_enabled: ${{ steps.evaluate.outputs.autofix_enabled }}\n has_agent_label: ${{ steps.evaluate.outputs.has_agent_label }}\n trace: ${{ steps.evaluate.outputs.trace }}\n+ start_ts: ${{ steps.timestamps.outputs.start_ts }}\n steps:\n - name: Checkout\n uses: actions/checkout@v4\n \n+ - name: Capture timestamps\n+ id: timestamps\n+ run: echo \"start_ts=$(date -u +%s)\" >> \"$GITHUB_OUTPUT\"\n+\n - name: Evaluate keepalive state\n id: evaluate\n uses: actions/github-script@v7\n with:\n github-token: ${{ secrets.GITHUB_TOKEN }}\n script: |\n const { evaluateKeepaliveLoop } = require('./.github/scripts/keepalive_loop.js');\n const result = await evaluateKeepaliveLoop({ github, context, core });\n const output = {\n pr_number: String(result.prNumber || ''),\n action: result.action || '',\n reason: result.reason || '',\n gate_conclusion: result.gateConclusion || '',\n iteration: String(result.iteration ?? ''),\n max_iterations: String(result.maxIterations ?? ''),\n failure_threshold: String(result.failureThreshold ?? ''),\n tasks_total: String(result.checkboxCounts?.total ?? ''),\n tasks_unchecked: String(result.checkboxCounts?.unchecked ?? ''),\n keepalive_enabled: String(result.keepaliveEnabled ?? ''),\n autofix_enabled: String(result.config?.autofix_enabled ?? ''),\n has_agent_label: String(result.hasAgentLabel ?? ''),\n trace: String(result.config?.trace || result.state?.trace || ''),\n };\n for (const [key, value] of Object.entries(output)) {\n core.setOutput(key, value);\n@@ -71,47 +76,122 @@ jobs:\n name: Keepalive next task\n needs: evaluate\n if: needs.evaluate.outputs.action == 'run'\n uses: ./.github/workflows/reusable-codex-run.yml\n secrets: inherit\n with:\n prompt_file: .github/codex/prompts/keepalive_next_task.md\n mode: keepalive\n pr_number: ${{ needs.evaluate.outputs.pr_number }}\n concurrency:\n group: keepalive-${{ needs.evaluate.outputs.pr_number }}\n cancel-in-progress: false\n \n summary:\n name: Update keepalive summary\n needs:\n - evaluate\n - run-codex\n if: always() && needs.evaluate.outputs.pr_number != '' && needs.evaluate.outputs.pr_number != '0'\n runs-on: ubuntu-latest\n environment: agent-standard\n steps:\n - name: Checkout\n uses: actions/checkout@v4\n \n+ - name: Emit keepalive metrics\n+ id: keepalive-metrics\n+ env:\n+ PR_NUMBER: ${{ needs.evaluate.outputs.pr_number }}\n+ ACTION: ${{ needs.evaluate.outputs.action }}\n+ REASON: ${{ needs.evaluate.outputs.reason }}\n+ GATE_CONCLUSION: ${{ needs.evaluate.outputs.gate_conclusion }}\n+ ITERATION: ${{ needs.evaluate.outputs.iteration }}\n+ MAX_ITERATIONS: ${{ needs.evaluate.outputs.max_iterations }}\n+ TASKS_TOTAL: ${{ needs.evaluate.outputs.tasks_total }}\n+ TASKS_UNCHECKED: ${{ needs.evaluate.outputs.tasks_unchecked }}\n+ START_TS: ${{ needs.evaluate.outputs.start_ts }}\n+ run: |\n+ set -euo pipefail\n+\n+ now=$(date -u +%s)\n+ if [[ \"${START_TS:-}\" =~ ^[0-9]+$ ]]; then\n+ duration=$(( now - START_TS ))\n+ if [ \"$duration\" -lt 0 ]; then duration=0; fi\n+ else\n+ duration=0\n+ fi\n+\n+ tasks_total=${TASKS_TOTAL:-0}\n+ tasks_unchecked=${TASKS_UNCHECKED:-0}\n+ if ! [[ \"$tasks_total\" =~ ^-?[0-9]+$ ]]; then tasks_total=0; fi\n+ if ! [[ \"$tasks_unchecked\" =~ ^-?[0-9]+$ ]]; then tasks_unchecked=0; fi\n+ tasks_completed=$(( tasks_total - tasks_unchecked ))\n+ if [ \"$tasks_completed\" -lt 0 ]; then tasks_completed=0; fi\n+\n+ metrics_json=$(jq -n \\\n+ --arg pr \"${PR_NUMBER:-0}\" \\\n+ --arg iteration \"${ITERATION:-0}\" \\\n+ --arg action \"${ACTION:-}\" \\\n+ --arg stop_reason \"${REASON:-}\" \\\n+ --arg gate_conclusion \"${GATE_CONCLUSION:-}\" \\\n+ --arg tasks_total \"$tasks_total\" \\\n+ --arg tasks_completed \"$tasks_completed\" \\\n+ --arg duration \"$duration\" \\\n+ '{\n+ pr_number: ($pr | tonumber? // 0),\n+ iteration_count: ($iteration | tonumber? // 0),\n+ action: $action,\n+ stop_reason: $stop_reason,\n+ gate_conclusion: $gate_conclusion,\n+ tasks_total: ($tasks_total | tonumber? // 0),\n+ tasks_completed: ($tasks_completed | tonumber? // 0),\n+ duration_seconds: ($duration | tonumber? // 0)\n+ }')\n+\n+ {\n+ echo '### Keepalive metrics'\n+ echo ''\n+ echo '| Field | Value |'\n+ echo '| --- | --- |'\n+ echo \"| pr_number | $(echo \"$metrics_json\" | jq -r '.pr_number') |\"\n+ echo \"| iteration_count | $(echo \"$metrics_json\" | jq -r '.iteration_count') |\"\n+ echo \"| action | $(echo \"$metrics_json\" | jq -r '.action') |\"\n+ echo \"| stop_reason | $(echo \"$metrics_json\" | jq -r '.stop_reason') |\"\n+ echo \"| gate_conclusion | $(echo \"$metrics_json\" | jq -r '.gate_conclusion') |\"\n+ echo \"| tasks_total | $(echo \"$metrics_json\" | jq -r '.tasks_total') |\"\n+ echo \"| tasks_completed | $(echo \"$metrics_json\" | jq -r '.tasks_completed') |\"\n+ echo \"| duration_seconds | $(echo \"$metrics_json\" | jq -r '.duration_seconds') |\"\n+ } >> \"$GITHUB_STEP_SUMMARY\"\n+\n+ echo \"$metrics_json\" >> keepalive-metrics.ndjson\n+\n+ - name: Upload keepalive metrics artifact\n+ uses: actions/upload-artifact@v4\n+ with:\n+ name: keepalive-metrics\n+ path: keepalive-metrics.ndjson\n+ retention-days: 30\n+ if-no-files-found: error\n+\n - name: Update summary comment\n uses: actions/github-script@v7\n with:\n github-token: ${{ secrets.GITHUB_TOKEN }}\n script: |\n const { updateKeepaliveLoopSummary } = require('./.github/scripts/keepalive_loop.js');\n const inputs = {\n pr_number: Number('${{ needs.evaluate.outputs.pr_number }}') || 0,\n action: '${{ needs.evaluate.outputs.action }}',\n reason: '${{ needs.evaluate.outputs.reason }}',\n gate_conclusion: '${{ needs.evaluate.outputs.gate_conclusion }}',\n iteration: Number('${{ needs.evaluate.outputs.iteration }}') || 0,\n max_iterations: Number('${{ needs.evaluate.outputs.max_iterations }}') || 0,\n failure_threshold: Number('${{ needs.evaluate.outputs.failure_threshold }}') || 3,\n tasks_total: Number('${{ needs.evaluate.outputs.tasks_total }}') || 0,\n tasks_unchecked: Number('${{ needs.evaluate.outputs.tasks_unchecked }}') || 0,\n keepalive_enabled: '${{ needs.evaluate.outputs.keepalive_enabled }}',\n autofix_enabled: '${{ needs.evaluate.outputs.autofix_enabled }}',\n trace: '${{ needs.evaluate.outputs.trace }}',\n run_result: '${{ needs.run-codex.result }}',\n };\n await updateKeepaliveLoopSummary({ github, context, core, inputs });\n","external_storage_diff",{"_564":565,"_566":-5},"files_modified","lines_added",80,"lines_removed","commit_message","Add keepalive metrics summary and artifact","additional_parent_commit_shas","file_id","file_000000009610722fb9ada0a5502d6e6b","ttl",{"_104":318,"_53":96,"_108":318,"_569":570,"_571":572,"_573":574,"_144":-5,"_130":575},[95],"input_items",[596,597,598,599],"external_post_config",{"_576":577,"_250":181,"_578":579,"_261":-5,"_552":244,"_580":18,"_581":-5,"_582":-5,"_583":584,"_585":586,"_587":-5,"_588":-5,"_589":590,"_591":18,"_592":70,"_593":65,"_594":18,"_595":-5},"user_model_slug","slug",1766571317.129637,"installation_id",71148695,"pr_number",95,"enable_internal_github_app_routing","gitlab_service_account_project_id","review_trigger","comment_id",3689343499,"comment_type","issue","pr_write_guard_token","pending_pr_reaction_id","pending_comment_reaction_id",320852784,"comment_if_no_findings","comment_on_error","share_url","is_parallel_review","review_summary_id",{"_104":523,"_108":318,"_350":611},{"_302":605,"_304":606,"_607":608,"_609":140,"_314":-5,"_104":610},{"_104":600,"_304":604,"_340":-5,"_602":-5,"_603":-5},{"_104":600,"_304":601,"_340":-5,"_602":-5,"_603":-5},"pull_request_comment","\nKeepalive loop status for **PR #95**\n\n- Action: **stop** (no-checklists)\n- Gate conclusion: **unknown**\n- Tasks: **0/0 complete**\n- Iteration: **0/5**\n- Keepalive enabled: **yes**\n- Autofix enabled: **no**\n- Status: **Paused – human attention required**\n\n","side","line","\n## Automated Status Summary\n**Head SHA:** 76c1a041e3009ec484fd6ab6ca314cb63290f982\n**Latest Runs:** ⏳ pending — Gate\n**Required contexts:** Gate / gate, Health 45 Agents Guard / Enforce agents workflow protections\n**Required:** core tests (3.11): ⏳ pending, core tests (3.12): ⏳ pending, docker smoke: ⏳ pending, gate: ⏳ pending\n\n| Workflow / Job | Result | Logs |\n|----------------|--------|------|\n| _(no jobs reported)_ | ⏳ pending | — |\n\n_Updated automatically; will refresh on subsequent CI/Docker completions._\n\n\n---\n### Keepalive checklist\n\n#### Scope\n- [ ] Context / problem:\n- [ ] - The agent workflows (keepalive-loop, autofix-loop, verifier) run frequently but there's no visibility into:\n- [ ] - How many iterations each PR takes to complete\n- [ ] - Success vs failure rates for autofix attempts\n- [ ] - Which stop conditions are triggered most often\n- [ ] - Average time from PR open to tasks-complete\n- [ ] - Which types of failures autofix can vs cannot fix\n- [ ] - Debugging loop behavior requires manually inspecting workflow run logs.\n- [ ] - There's no historical trend data to identify regressions or improvements.\n- [ ] Goal:\n- [ ] - Add lightweight metrics collection to agent workflows.\n- [ ] - Create a metrics summary that can be viewed in GitHub Actions job summaries.\n- [ ] - Store historical data in a JSON artifact or repository file for trend analysis.\n\n#### Tasks\n- [ ] Add metrics emission to keepalive-loop workflow:\n- [ ] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [ ] Write to GITHUB_STEP_SUMMARY in structured format\n- [ ] Append to metrics artifact (ndjson format)\n- [ ] Add metrics emission to autofix-loop workflow:\n- [ ] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [ ] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\n#### Acceptance criteria\n- [ ] - Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n- [ ] - Metrics are persisted as artifacts for at least 30 days.\n- [ ] - Weekly summary report is automatically generated and posted.\n- [ ] - Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"","chore(codex): bootstrap PR for issue #93","\n\n\n\n## Automated Status Summary\n#### Scope\n- [ ] Context / problem:\n- [ ] - The agent workflows (keepalive-loop, autofix-loop, verifier) run frequently but there's no visibility into:\n- [ ] - How many iterations each PR takes to complete\n- [ ] - Success vs failure rates for autofix attempts\n- [ ] - Which stop conditions are triggered most often\n- [ ] - Average time from PR open to tasks-complete\n- [ ] - Which types of failures autofix can vs cannot fix\n- [ ] - Debugging loop behavior requires manually inspecting workflow run logs.\n- [ ] - There's no historical trend data to identify regressions or improvements.\n- [ ] Goal:\n- [ ] - Add lightweight metrics collection to agent workflows.\n- [ ] - Create a metrics summary that can be viewed in GitHub Actions job summaries.\n- [ ] - Store historical data in a JSON artifact or repository file for trend analysis.\n\n#### Tasks\n- [ ] Add metrics emission to keepalive-loop workflow:\n- [ ] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [ ] Write to GITHUB_STEP_SUMMARY in structured format\n- [ ] Append to metrics artifact (ndjson format)\n- [ ] Add metrics emission to autofix-loop workflow:\n- [ ] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [ ] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\n#### Acceptance criteria\n- [ ] - Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n- [ ] - Metrics are persisted as artifacts for at least 30 days.\n- [ ] - Weekly summary report is automatically generated and posted.\n- [ ] - Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"\n\n**Head SHA:** b1bbc7af98f18cdc1505501458fcb35ba7d62345\n**Latest Runs:** ⏹️ cancelled — Gate\n**Required:** gate: ⏹️ cancelled\n\n| Workflow / Job | Result | Logs |\n|----------------|--------|------|\n| Agents Keepalive Loop | ⏹️ cancelled | [View run](https://github.com/stranske/Workflows/actions/runs/20483945031) |\n| Agents PR meta manager | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20483950214) |\n| CI Autofix Loop | ⏹️ cancelled | [View run](https://github.com/stranske/Workflows/actions/runs/20483944998) |\n| Copilot code review | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20483945022) |\n| Gate | ⏹️ cancelled | [View run](https://github.com/stranske/Workflows/actions/runs/20483945043) |\n| Health 40 Sweep | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20483945155) |\n| Health 44 Gate Branch Protection | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20483945124) |\n| Health 45 Agents Guard | ⏹️ cancelled | [View run](https://github.com/stranske/Workflows/actions/runs/20483944946) |\n| Health 50 Security Scan | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20483945103) |\n| Maint 52 Validate Workflows | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20483945108) |\n| PR 11 - Minimal invariant CI | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20483945099) |\n| Selftest CI | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20483945102) |\n","base_ref","08620e9cd0a7e21f78f3ae6fd6cfc45855d3af21","head_ref","pull_request_info",[612],{"_532":57,"_57":613},"@codex Your objective is to satisfy the **Acceptance Criteria** by completing each **Task** within the defined **Scope**.\\n\\n**This round you MUST:**\\n1. Implement actual code or test changes that advance at least one incomplete task toward acceptance.\\n2. Commit meaningful source code (.py, .yml, .js, etc.)—not just status/docs updates.\\n3. Mark a task checkbox complete ONLY after verifying the implementation works.\\n4. **POST A REPLY COMMENT** with completed checkboxes using the **EXACT TEXT** from the lists below.\\n\\n**CRITICAL - Checkbox Format:**\\nWhen posting your reply, copy the **exact checkbox text** from the Tasks and Acceptance Criteria sections below. Do NOT paraphrase or summarize. The automation matches text exactly.\\n\\nExample format for your 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