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the workflow and CI system for my GitHub 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bash\nset -euo pipefail\n\nLOG_PREFIX=\"[workflows-codex-env]\"\nlog() { printf \"%s %s\\n\" \"$LOG_PREFIX\" \"$*\"; }\nwarn() { printf \"%s [warn] %s\\n\" \"$LOG_PREFIX\" \"$*\" >&2; }\ndie() { printf \"%s [error] %s\\n\" \"$LOG_PREFIX\" \"$*\" >&2; exit 1; }\n\n# -----------------------------\n# Locate Workflows repo root robustly (Codex scripts run from /tmp)\n# -----------------------------\nis_workflows_root() {\n local d=\"$1\"\n [[ -f \"${d}/pyproject.toml\" ]] || return 1\n [[ -f \"${d}/scripts/dev_check.sh\" ]] || return 1\n grep -q 'name = \"workflows\"' \"${d}/pyproject.toml\" 2>/dev/null || return 1\n return 0\n}\n\nfind_repo_root() {\n # 1) Prefer git root, but verify it's the Workflows repo.\n if command -v git >/dev/null 2>&1; then\n if git rev-parse --show-toplevel >/dev/null 2>&1; then\n local gr\n gr=\"$(git rev-parse --show-toplevel)\"\n if is_workflows_root \"${gr}\"; then\n echo \"${gr}\"\n return 0\n fi\n fi\n fi\n\n # 2) Walk upwards from current directory.\n local d=\"${PWD}\"\n while [[ \"${d}\" != \"/\" ]]; do\n if is_workflows_root \"${d}\"; then\n echo \"${d}\"\n return 0\n fi\n d=\"$(dirname \"${d}\")\"\n done\n\n # 3) Last resort: search common mount points.\n local bases=(\"${PWD}\" \"${GITHUB_WORKSPACE:-}\" \"/workspace\" \"/repo\" \"${HOME:-/home}\" \"/tmp\")\n local b\n for b in \"${bases[@]}\"; do\n [[ -n \"${b}\" && -d \"${b}\" ]] || continue\n while IFS= read -r py; do\n local cand\n cand=\"$(cd \"$(dirname \"${py}\")\" && pwd)\"\n if is_workflows_root \"${cand}\"; then\n echo \"${cand}\"\n return 0\n fi\n done < <(find \"${b}\" -maxdepth 5 -type f -name pyproject.toml 2>/dev/null | head -n 100)\n done\n\n return 1\n}\n\nREPO_ROOT=\"$(find_repo_root || true)\"\n[[ -n \"${REPO_ROOT}\" ]] || die \"Could not locate Workflows repo root (pyproject.toml + scripts/dev_check.sh + name='workflows').\"\n\ncd \"${REPO_ROOT}\"\nlog \"Repo root: ${REPO_ROOT}\"\n\n# Git sanity (best-effort)\nif command -v git >/dev/null 2>&1; then\n git config --global --add safe.directory \"${REPO_ROOT}\" >/dev/null 2>&1 || true\n git config --global user.name \"${GIT_AUTHOR_NAME:-Codex}\" >/dev/null 2>&1 || true\n git config --global user.email \"${GIT_AUTHOR_EMAIL:-codex@users.noreply.github.com}\" >/dev/null 2>&1 || true\nfi\n\n# -----------------------------\n# Python + venv (repo requires 3.11+)\n# -----------------------------\nPYTHON_BIN=\"${PYTHON_BIN:-python3}\"\ncommand -v \"${PYTHON_BIN}\" >/dev/null 2>&1 || die \"python3 not found on PATH.\"\n\n\"${PYTHON_BIN}\" - <<'PY'\nimport sys\nif sys.version_info < (3, 11):\n raise SystemExit(f\"Python 3.11+ required; found {sys.version.split()[0]}\")\nprint(\"Python OK:\", sys.version.split()[0])\nPY\n\nVENV_PATH=\"${REPO_ROOT}/.venv\"\nif [[ ! -d \"${VENV_PATH}\" ]]; then\n log \"Creating venv at ${VENV_PATH}\"\n \"${PYTHON_BIN}\" -m venv \"${VENV_PATH}\"\nfi\n# shellcheck disable=SC1091\nsource \"${VENV_PATH}/bin/activate\"\n\npython -m pip install -U pip setuptools wheel >/dev/null\n\n# -----------------------------\n# Optional lockfile sync (if present)\n# -----------------------------\npython -m pip install -U uv >/dev/null || true\n\nLOCK_FILE=\"${REPO_ROOT}/requirements.lock\"\nif [[ -f \"${LOCK_FILE}\" ]]; then\n log \"Found requirements.lock; syncing with uv (best-effort)\"\n uv pip sync \"${LOCK_FILE}\" || true\nelse\n log \"No requirements.lock found (expected for this repo).\"\nfi\n\n# -----------------------------\n# Install pyproject dependencies + dev extras WITHOUT installing the repo itself\n# (Avoids editable-build failure due to flat-layout multiple top-level packages.)\n# -----------------------------\nlog \"Installing deps + dev tools from pyproject.toml (no editable install)...\"\npython - <<'PY'\nfrom __future__ import annotations\nfrom pathlib import Path\nimport subprocess, sys\n\ntry:\n import tomllib # py3.11+\nexcept ModuleNotFoundError:\n subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"tomli\"])\n import tomli as tomllib # type: ignore\n\ndata = tomllib.loads(Path(\"pyproject.toml\").read_text(encoding=\"utf-8\"))\nproj = data.get(\"project\", {}) or {}\n\ndeps = list(proj.get(\"dependencies\", []) or [])\ndev = list((proj.get(\"optional-dependencies\", {}) or {}).get(\"dev\", []) or [])\n\n# de-dup while preserving order\nseen = set()\npkgs = []\nfor p in deps + dev:\n if p not in seen:\n pkgs.append(p)\n seen.add(p)\n\nif pkgs:\n subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", *pkgs])\nelse:\n print(\"[workflows-codex-env] [warn] No dependencies/dev extras found in pyproject.toml.\")\nPY\n\n# -----------------------------\n# Ensure required test packages (the ones your checker flags as missing)\n# -----------------------------\nlog \"Ensuring required test packages are installed...\"\npython - <<'PY'\nimport importlib, subprocess, sys\n\nrequired = {\n \"pytest\": \"pytest\",\n \"coverage\": \"coverage\",\n \"hypothesis\": \"hypothesis\",\n \"pandas\": \"pandas\",\n \"numpy\": \"numpy\",\n \"pydantic\": \"pydantic\",\n \"yaml\": \"PyYAML\",\n \"requests\": \"requests\",\n \"jsonschema\": \"jsonschema\",\n}\n\nmissing = []\nfor mod, pkg in required.items():\n try:\n importlib.import_module(mod)\n except Exception:\n missing.append(pkg)\n\nif missing:\n print(\"[workflows-codex-env] Installing missing:\", \" \".join(missing))\n subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", *missing])\nelse:\n print(\"[workflows-codex-env] Required packages already present.\")\nPY\n\n# -----------------------------\n# Make local modules importable (agents/, templates/, etc.)\n# -----------------------------\nexport PYTHONPATH=\"${REPO_ROOT}${PYTHONPATH:+:${PYTHONPATH}}\"\n\n# Persist env for interactive shells (best-effort)\nMARKER=\"# >>> Workflows Codex env >>>\"\nif [[ -w \"${HOME}/.bashrc\" ]] && ! grep -qs \"${MARKER}\" \"${HOME}/.bashrc\"; then\n {\n echo \"\"\n echo \"${MARKER}\"\n echo \"export WORKFLOWS_REPO_ROOT=\\\"${REPO_ROOT}\\\"\"\n echo \"export VIRTUAL_ENV=\\\"${REPO_ROOT}/.venv\\\"\"\n echo \"export PATH=\\\"${REPO_ROOT}/.venv/bin:\\$PATH\\\"\"\n echo \"export PYTHONPATH=\\\"${REPO_ROOT}\\${PYTHONPATH:+:\\$PYTHONPATH}\\\"\"\n echo \"# <<< Workflows Codex env <<<\"\n } >> \"${HOME}/.bashrc\" || true\nfi\n\n# -----------------------------\n# Optional: run repo dependency checker (should be clean now; don't brick setup if it isn't)\n# -----------------------------\nif [[ -x \"${REPO_ROOT}/scripts/check_test_dependencies.sh\" ]]; then\n log \"Running scripts/check_test_dependencies.sh (non-fatal)\"\n bash \"${REPO_ROOT}/scripts/check_test_dependencies.sh\" || true\nfi\n\nlog \"Setup complete. Common next commands:\"\nlog \" ./scripts/dev_check.sh\"\nlog \" ./scripts/validate_fast.sh\"\n","mode","on","preset_allowlist","allowlist_domains","pypi.org, github.com, files.pythonhosted.org, deb.debian.org, security.ubuntu.com, raw.githubusercontent.com","allowlist_rules","denylist_domains","safe_methods_only","number",95,"https://github.com/stranske/Workflows/pull/95","state","open","merged","mergeable","draft","title","chore(codex): bootstrap PR for issue #93","body","\n\n\n\n## Automated Status Summary\n#### Scope\n- [ ] Context / problem:\n- [ ] - The agent workflows (keepalive-loop, autofix-loop, verifier) run frequently but there's no visibility into:\n- [ ] - How many iterations each PR takes to complete\n- [ ] - Success vs failure rates for autofix attempts\n- [ ] - Which stop conditions are triggered most often\n- [ ] - Average time from PR open to tasks-complete\n- [ ] - Which types of failures autofix can vs cannot fix\n- [ ] - Debugging loop behavior requires manually inspecting workflow run logs.\n- [ ] - There's no historical trend data to identify regressions or improvements.\n- [ ] Goal:\n- [ ] - Add lightweight metrics collection to agent workflows.\n- [ ] - Create a metrics summary that can be viewed in GitHub Actions job summaries.\n- [ ] - Store historical data in a JSON artifact or repository file for trend analysis.\n\n#### Tasks\n- [x] Add metrics emission to keepalive-loop workflow:\n- [x] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [x] Write to GITHUB_STEP_SUMMARY in structured format\n- [x] Append to metrics artifact (ndjson format)\n- [ ] Add metrics emission to autofix-loop workflow:\n- [ ] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [ ] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\n#### Acceptance criteria\n- [ ] - Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n- [ ] - Metrics are persisted as artifacts for at least 30 days.\n- [ ] - Weekly summary report is automatically generated and posted.\n- [ ] - Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"\n\n**Head SHA:** 6cf70d4ec983bf9eecdc4d58ea077f34ba2d8926\n**Latest Runs:** ✅ success — Gate\n**Required:** gate: ✅ success\n\n| Workflow / Job | Result | Logs |\n|----------------|--------|------|\n| Agents PR meta manager | ⏳ queued | [View run](https://github.com/stranske/Workflows/actions/runs/20485332176) |\n| CI Autofix Loop | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301395) |\n| Gate | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301389) |\n| Health 40 Sweep | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301367) |\n| Health 44 Gate Branch Protection | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301341) |\n| Health 45 Agents Guard | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301315) |\n| Health 50 Security Scan | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301347) |\n| Maint 52 Validate Workflows | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301357) |\n| PR 11 - Minimal invariant CI | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301324) |\n| Selftest CI | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301334) |\n","base","head","base_sha","00b626c4dd19a755239bc37d0b3fd3840180c4f2","head_sha","head_repo_id","head_repo_full_name","merge_commit_sha","1e1fd2506f07a94a0f257de411ed4ff3a7a97ffa","comments","diff","user",{"_276":277,"_161":277,"_324":-5,"_280":281,"_53":278},"commits",2,"changed_files",1,"additions","deletions","email","events",[],[],"messages",[],{"_104":720,"_721":722,"_723":724,"_725":726,"_727":-5},{"_104":700,"_108":105,"_347":701},{"_104":333,"_334":335},"partial_repo_snapshot","files",[336],{"_337":338,"_339":-5,"_340":341,"_342":-5},"path",".github/workflows/agents-autofix-loop.yml","contents","line_range_contents",[343],"missing_reason",{"_344":321,"_345":346,"_347":348,"_349":70},"line_range_start","line_range_end",495,"content",[350,223,351,352,353,354,355,356,223,357,358,359,360,223,361,362,363,223,364,365,366,367,368,369,370,371,372,373,374,375,376,377,378,379,380,381,382,383,384,385,386,387,388,389,390,223,391,392,393,387,394,395,396,397,223,398,399,400,401,402,403,404,223,405,223,406,407,401,408,403,404,223,409,410,401,411,403,404,223,412,413,414,415,416,223,417,418,419,420,421,422,423,416,223,424,425,223,426,427,404,223,428,429,393,387,395,406,430,431,432,433,434,435,436,437,438,439,440,441,442,443,223,444,445,446,447,448,449,443,223,407,450,404,223,451,452,404,223,453,454,404,223,409,410,455,404,223,456,223,457,458,459,460,223,461,462,404,223,463,464,404,223,465,466,467,404,223,468,469,470,404,223,471,472,473,474,475,476,223,477,478,479,480,481,223,482,483,404,223,484,485,486,487,488,416,223,489,490,491,485,486,492,493,488,494,416,223,495,496,497,223,498,499,500,501,223,502,503,504,505,506,507,443,223,508,509,510,511,449,223,512,513,514,515,449,223,516,517,518,519,520,521,522,523,524,525,526,527,528,529,530,531,522,532,223,533,534,535,449,536,404,223,537,538,539,540,449,404,223,541,542,543,544,545,546,547,548,223,549,550,551,552,404,223,553,554,555,556,223,557,558,404,223,559,560,561,562,223,563,564,404,223,565,566,567,568,569,570,571,572,573,574,575,576,577,578,223,579,566,580,581,367,368,384,582,393,387,395,583,584,585,403,404,223,586,587,588,223,457,223,589,485,486,590,591,592,593,416,223,594,595,596,597,598,599,600,599,597,601,602,223,603,485,486,590,604,416,223,605,606,607,608,609,610,367,368,611,612,613,614,384,615,616,393,387,394,395,617,584,618,403,404,223,619,620,621,622,623,624,625,626,627,628,629,223,457,223,630,631,632,633,634,635,636,637,638,639,404,223,640,223,641,642,643,644,645,646,647,648,649,650,223,651,652,653,654,655,656,449,404,223,657,658,659,660,661,662,663,664,665,666,667,443,223,668,669,670,671,672,673,674,675,676,548,223,677,223,678,679,680,681,682,683,548,223,684,685,686,687,688,223,396,689,690,691,223,692,693,694,387,695,696,697,698,699],"contains_end_of_file","name: Agents Autofix Loop","on:"," workflow_run:"," workflows:"," - Gate"," types:"," - completed","permissions:"," contents: write"," pull-requests: write"," actions: read","concurrency:"," group: agents-autofix-loop-${{ github.event.workflow_run.pull_requests[0].number || github.run_id }}"," cancel-in-progress: false","jobs:"," prepare:"," name: Prepare autofix context"," runs-on: ubuntu-latest"," environment: agent-standard"," outputs:"," should_run: ${{ steps.evaluate.outputs.should_run }}"," pr_number: ${{ steps.evaluate.outputs.pr_number }}"," head_ref: ${{ steps.evaluate.outputs.head_ref }}"," head_sha: ${{ steps.evaluate.outputs.head_sha }}"," appendix: ${{ steps.evaluate.outputs.appendix }}"," stop_reason: ${{ steps.evaluate.outputs.stop_reason }}"," attempts: ${{ steps.evaluate.outputs.attempts }}"," max_attempts: ${{ steps.evaluate.outputs.max_attempts }}"," security_blocked: ${{ steps.security_gate.outputs.blocked }}"," security_reason: ${{ steps.security_gate.outputs.reason }}"," trigger_reason: ${{ steps.evaluate.outputs.trigger_reason }}"," trigger_job: ${{ steps.evaluate.outputs.trigger_job }}"," trigger_step: ${{ steps.evaluate.outputs.trigger_step }}"," attempt_number: ${{ steps.evaluate.outputs.attempt_number }}"," steps:"," - name: Checkout (for security gate)"," uses: actions/checkout@v4"," with:"," sparse-checkout: |"," .github/scripts/prompt_injection_guard.js"," sparse-checkout-cone-mode: false"," - name: Security gate - prompt injection guard"," id: security_gate"," uses: actions/github-script@v7"," github-token: ${{ secrets.GITHUB_TOKEN }}"," script: |"," const fs = require('fs');"," const guardPath = './.github/scripts/prompt_injection_guard.js';"," // Check if guard exists (may not exist on older branches)"," if (!fs.existsSync(guardPath)) {"," core.info('Prompt injection guard not found, skipping security check.');"," core.setOutput('blocked', 'false');"," core.setOutput('reason', 'guard-not-found');"," return;"," }"," const { evaluatePromptInjectionGuard } = require(guardPath);"," const run = context.payload.workflow_run;"," if (!run) {"," core.setOutput('reason', 'no-workflow-run');"," const prInfo = Array.isArray(run.pull_requests) ? run.pull_requests[0] : undefined;"," if (!prInfo?.number) {"," core.setOutput('reason', 'no-pr-context');"," const { data: pr } = await github.rest.pulls.get({"," owner: context.repo.owner,"," repo: context.repo.repo,"," pull_number: prInfo.number,"," });"," const result = await evaluatePromptInjectionGuard({"," github,"," context,"," pr,"," actor: run.actor?.login || context.actor,"," promptContent: pr.body || '',"," core,"," core.setOutput('blocked', String(result.blocked));"," core.setOutput('reason', result.reason);"," if (result.blocked) {"," core.setFailed(`Security gate blocked: ${result.reason}`);"," - name: Evaluate workflow_run"," id: evaluate"," const outputs = {"," should_run: 'false',"," pr_number: '',"," head_ref: '',"," head_sha: '',"," appendix: '',"," stop_reason: '',"," trigger_reason: '',"," trigger_job: '',"," trigger_step: '',"," attempts: '0',"," max_attempts: '3',"," attempt_number: '0',"," };"," const stop = (reason, stopReason = '') => {"," core.info(`Autofix loop skipped: ${reason}.`);"," outputs.stop_reason = stopReason || reason;"," for (const [key, value] of Object.entries(outputs)) {"," core.setOutput(key, value);"," }"," return stop('missing workflow_run payload');"," if ((run.conclusion || '').toLowerCase() === 'success') {"," return stop('upstream Gate succeeded');"," if ((run.event || '').toLowerCase() !== 'pull_request') {"," return stop(`unsupported event type: ${run.event || 'unknown'}`);"," return stop('no pull request context on workflow_run');"," outputs.pr_number = String(prInfo.number);"," const { owner, repo } = context.repo;"," const prNumber = Number(prInfo.number);"," const pr = await github.rest.pulls.get({ owner, repo, pull_number: prNumber });"," const prData = pr.data;"," if (!prData || prData.state !== 'open') {"," return stop('pull request is not open');"," if (prData.draft) {"," return stop('draft pull request');"," const headSha = prData.head?.sha;"," if (!headSha || headSha !== run.head_sha) {"," return stop('head SHA drifted since Gate started');"," const sameRepo = prData.head?.repo?.full_name === `${owner}/${repo}`;"," if (!sameRepo) {"," return stop('head repository mismatch (likely fork)');"," const labels = Array.isArray(prData.labels)"," ? prData.labels"," .map((label) => (label?.name || '').toLowerCase())"," .filter(Boolean)"," : [];"," const hasAgentLabel = labels.includes('agent:codex');"," const body = prData.body || '';"," const configMatch = body.match(/autofix\\s*:\\s*(true|false)/i);"," const autofixEnabled = configMatch"," ? configMatch[1].toLowerCase() === 'true'"," : hasAgentLabel;"," if (!autofixEnabled) {"," return stop('autofix disabled for this pull request');"," const jobs = await github.paginate(github.rest.actions.listJobsForWorkflowRun, {"," owner,"," repo,"," run_id: run.id,"," per_page: 100,"," const workflowFile = 'agents-autofix-loop.yml';"," const maxAttempts = Number(outputs.max_attempts);"," const previousRuns = await github.paginate(github.rest.actions.listWorkflowRuns, {"," workflow_id: workflowFile,"," head_sha: run.head_sha,"," status: 'completed',"," const attemptCount = previousRuns.length + 1;"," outputs.attempts = String(attemptCount);"," outputs.max_attempts = String(maxAttempts);"," const failingJobs = [];"," let triggerReason = '';"," let triggerJob = '';"," let triggerStep = '';"," const classifyReason = (text = '') => {"," const value = text.toLowerCase();"," if (/(mypy|type[\\s-]*check|typecheck|pyright)/.test(value)) return 'mypy';"," if (/(pytest|test)/.test(value)) return 'pytest';"," if (/(lint|ruff|flake|format)/.test(value)) return 'lint';"," return '';"," for (const job of jobs) {"," const conclusion = (job.conclusion || job.status || '').toLowerCase();"," if (!conclusion || ['success', 'skipped'].includes(conclusion)) {"," continue;"," const jobReason = classifyReason(job.name || '');"," if (!triggerReason && jobReason) {"," triggerReason = jobReason;"," triggerJob = job.name || job.id || '';"," const failingSteps ="," Array.isArray(job.steps)"," ? job.steps"," .filter((step) => {"," const stepConclusion = (step.conclusion || step.status || '').toLowerCase();"," return stepConclusion && !['success', 'skipped'].includes(stepConclusion);"," })"," .map((step) => {"," const stepLabel = `${step.name} (${step.conclusion || step.status || 'unknown'})`;"," const stepReason = classifyReason(step.name || '');"," if (!triggerReason && stepReason) {"," triggerReason = stepReason;"," triggerJob = triggerJob || job.name || job.id || '';"," triggerStep = step.name || '';"," }"," return stepLabel;"," : [];"," const detailLines = [`- ${job.name} (${job.conclusion || job.status || 'unknown'})`];"," if (failingSteps.length > 0) {"," detailLines.push(` - steps: ${failingSteps.join('; ')}`);"," failingJobs.push(detailLines.join('\\n'));"," if (!triggerReason && failingJobs.length > 0) {"," triggerReason = 'unknown';"," if (jobs[0]) {"," triggerJob = jobs[0].name || jobs[0].id || '';"," const appendixLines = ["," `Gate run: ${run.html_url || run.id}`,"," `Conclusion: ${run.conclusion || run.status || 'unknown'}`,"," `PR: #${prNumber}`,"," `Head SHA: ${headSha}`,"," `Autofix attempts for this head: ${attemptCount} / ${maxAttempts}`,"," 'Fix scope: src/, tests/, tools/, scripts/, agents/, templates/, .github/',"," ];"," if (failingJobs.length > 0) {"," appendixLines.push('Failing jobs:', ...failingJobs);"," } else {"," appendixLines.push('Failing jobs: none reported.');"," outputs.appendix = appendixLines.join('\\n');"," outputs.trigger_reason = triggerReason || '';"," outputs.trigger_job = triggerJob || '';"," outputs.trigger_step = triggerStep || '';"," if (attemptCount > maxAttempts) {"," return stop(`autofix attempt limit reached (${attemptCount} > ${maxAttempts})`, 'max_attempts');"," outputs.should_run = 'true';"," outputs.head_ref = prData.head.ref || '';"," outputs.head_sha = headSha;"," outputs.attempt_number = String(attemptCount);"," for (const [key, value] of Object.entries(outputs)) {"," core.setOutput(key, value);"," autofix:"," needs: prepare"," if: needs.prepare.outputs.should_run == 'true'"," name: Run Codex autofix"," uses: ./.github/workflows/reusable-codex-run.yml"," with:"," prompt_file: .github/codex/prompts/autofix_from_ci_failure.md"," mode: autofix"," pr_number: ${{ needs.prepare.outputs.pr_number }}"," appendix: ${{ needs.prepare.outputs.appendix }}"," secrets:"," CODEX_AUTH_JSON: ${{ secrets.CODEX_AUTH_JSON }}"," WORKFLOWS_APP_ID: ${{ secrets.WORKFLOWS_APP_ID }}"," WORKFLOWS_APP_PRIVATE_KEY: ${{ secrets.WORKFLOWS_APP_PRIVATE_KEY }}"," needs-human:"," if: needs.prepare.outputs.stop_reason == 'max_attempts'"," name: Flag for human follow-up"," - name: Add needs-human label and comment"," const prNumber = Number('${{ needs.prepare.outputs.pr_number }}');"," if (!prNumber) {"," core.info('No PR number available; skipping comment/label.');"," const appendix = `${{ toJSON(needs.prepare.outputs.appendix) }}`.replace(/^\"|\"$/g, '');"," const attempts = ${{ needs.prepare.outputs.attempts || 0 }};"," const maxAttempts = ${{ needs.prepare.outputs.max_attempts || 0 }};"," await github.rest.issues.addLabels({"," issue_number: prNumber,"," labels: ['needs-human'],"," }).catch((error) => {"," core.warning(`Failed to add label: ${error.message}`);"," const body = ["," 'Autofix attempts exhausted for this head.',"," `Attempts: ${attempts} / ${maxAttempts}`,"," '',"," 'Latest Gate summary:',"," '```',"," appendix || 'No run context available.',"," 'Please investigate manually.',"," ].join('\\n');"," await github.rest.issues.createComment({"," body,"," metrics:"," name: Emit autofix metrics"," needs:"," - prepare"," - autofix"," if: always() && needs.prepare.outputs.pr_number != '' && needs.prepare.outputs.pr_number != '0'"," permissions:"," contents: read"," pull-requests: read"," actions: read"," - name: Emit metrics to summary and NDJSON"," id: emit"," const prNumber = Number('${{ needs.prepare.outputs.pr_number }}') || 0;"," core.info('No PR number resolved; skipping metrics emission.');"," const attemptNumber ="," Number('${{ needs.prepare.outputs.attempt_number }}') ||"," Number('${{ needs.prepare.outputs.attempts }}') ||"," 0;"," const triggerReason = '${{ needs.prepare.outputs.trigger_reason }}' || 'unknown';"," const triggerJob = '${{ needs.prepare.outputs.trigger_job }}';"," const triggerStep = '${{ needs.prepare.outputs.trigger_step }}';"," const initialHead = '${{ needs.prepare.outputs.head_sha }}';"," const headRef = '${{ needs.prepare.outputs.head_ref }}';"," const shouldRun = '${{ needs.prepare.outputs.should_run }}' === 'true';"," const autofixResult = '${{ needs.autofix.result }}';"," let currentHead = initialHead;"," try {"," const { data: pr } = await github.rest.pulls.get({"," owner,"," repo,"," pull_number: prNumber,"," });"," currentHead = pr.head?.sha || currentHead;"," } catch (error) {"," core.warning(`Failed to refresh PR head SHA: ${error.message}`);"," const fixApplied = Boolean(shouldRun && initialHead && currentHead && currentHead !== initialHead);"," let gateResultAfter = 'unknown';"," if (headRef) {"," try {"," const runs = await github.paginate(github.rest.actions.listWorkflowRuns, {"," owner,"," repo,"," workflow_id: 'pr-00-gate.yml',"," head_branch: headRef,"," per_page: 50,"," });"," const matching = runs.find((run) => run.head_sha === currentHead) || runs[0];"," if (matching) {"," gateResultAfter = matching.conclusion || matching.status || 'unknown';"," }"," } catch (error) {"," core.warning(`Failed to query Gate runs: ${error.message}`);"," const metrics = {"," workflow: 'agents-autofix-loop',"," pr_number: prNumber,"," attempt_number: attemptNumber,"," trigger_reason: triggerReason || 'unknown',"," trigger_job: triggerJob || '',"," trigger_step: triggerStep || '',"," fix_applied: fixApplied,"," gate_result_after: gateResultAfter,"," autofix_result: autofixResult || '',"," timestamp: new Date().toISOString(),"," const summaryTable = ["," ['PR', `#${prNumber}`],"," ['Attempt', String(attemptNumber)],"," ['Trigger reason', triggerReason || 'unknown'],"," ['Trigger job', triggerJob || ''],"," ['Trigger step', triggerStep || ''],"," ['Fix applied', String(fixApplied)],"," ['Gate result after', gateResultAfter],"," ['Autofix job result', autofixResult || 'unknown'],"," core.info(`Autofix metrics: ${JSON.stringify(metrics, null, 2)}`);"," const tableRows = ["," ["," { data: 'Key', header: true },"," { data: 'Value', header: true },"," ],"," ...summaryTable.map(([key, value]) => [key, String(value)]),"," await core.summary"," .addHeading('Autofix loop metrics', 2)"," .addTable(tableRows)"," .addSeparator()"," .write();"," const metricsPath = 'autofix-metrics.ndjson';"," fs.appendFileSync(metricsPath, JSON.stringify(metrics) + '\\n');"," core.setOutput('metrics_file', metricsPath);"," - name: Upload autofix metrics artifact"," if: steps.emit.outputs.metrics_file != ''"," uses: actions/upload-artifact@v4"," name: autofix-metrics-history"," path: ${{ steps.emit.outputs.metrics_file }}"," if-no-files-found: error"," retention-days: 30"," overwrite: true","message",[702,703,704,705,706,707],{"_708":57,"_57":719},{"_708":714,"_337":338,"_344":717,"_345":718},{"_708":57,"_57":716},{"_708":714,"_337":338,"_344":715,"_345":346},{"_708":57,"_57":713},{"_708":709,"_710":711,"_344":321,"_345":712},"content_type","terminal_chunk_citation","terminal_chunk_id","f56031",3,"\n\n**Testing**\n- ✅ `python - <<'PY'\\nimport yaml, pathlib\\npath = pathlib.Path('.github/workflows/agents-autofix-loop.yml')\\nwith path.open('r', encoding='utf-8') as f:\\n data = yaml.safe_load(f)\\nprint('ok', isinstance(data, dict))\\nPY`","repo_file_citation",369,"\n- Introduced a metrics job that records autofix attempt details, detects whether a fix changed the head SHA, captures Gate status after the attempt, writes a markdown summary, and appends NDJSON persisted for 30 days.",25,299,"- [x] Add metrics emission to keepalive-loop workflow:\n- [x] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [x] Write to GITHUB_STEP_SUMMARY in structured format\n- [x] Append to metrics artifact (ndjson format)\n- [x] Add metrics emission to autofix-loop workflow:\n- [x] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [x] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\nAcceptance Criteria:\n- [ ] - Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n- [ ] - Metrics are persisted as artifacts for at least 30 days.\n- [ ] - Weekly summary report is automatically generated and posted.\n- [ ] - Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"\n\n**Summary**\n- Added autofix prepare outputs to track trigger classification, job/step identifiers, and explicit attempt numbers for each Gate failure run.","pr","pr_title","Add autofix loop metrics emission","pr_message","## Summary\n- classify failing Gate jobs to record trigger reason, job, and step for autofix attempts\n- emit autofix metrics to the step summary and persist NDJSON with 30-day retention\n- detect whether a fix was applied and record the latest Gate status after an autofix attempt\n\n## Testing\n- python - <<'PY'\nimport yaml, pathlib\npath = pathlib.Path('.github/workflows/agents-autofix-loop.yml')\nwith path.open('r', encoding='utf-8') as f:\n data = yaml.safe_load(f)\nprint('ok', isinstance(data, dict))\nPY","output_diff",{"_104":725,"_728":729,"_139":140,"_730":-5,"_315":731,"_732":733,"_734":321,"_735":736,"_737":321,"_738":739,"_740":-5},"pre_apply_patch","repo_id","/workspace/Workflows","preapply_patch_base_commit_sha","diff --git a/.github/workflows/agents-autofix-loop.yml b/.github/workflows/agents-autofix-loop.yml\nindex 595818e6df2ce4ee30ea9bbf121b3f994d762ded..1127f414dc0bcc3299549ef45cfcab59664f46a5 100644\n--- a/.github/workflows/agents-autofix-loop.yml\n+++ b/.github/workflows/agents-autofix-loop.yml\n@@ -10,50 +10,54 @@ on:\n permissions:\n contents: write\n pull-requests: write\n actions: read\n \n concurrency:\n group: agents-autofix-loop-${{ github.event.workflow_run.pull_requests[0].number || github.run_id }}\n cancel-in-progress: false\n \n jobs:\n prepare:\n name: Prepare autofix context\n runs-on: ubuntu-latest\n environment: agent-standard\n outputs:\n should_run: ${{ steps.evaluate.outputs.should_run }}\n pr_number: ${{ steps.evaluate.outputs.pr_number }}\n head_ref: ${{ steps.evaluate.outputs.head_ref }}\n head_sha: ${{ steps.evaluate.outputs.head_sha }}\n appendix: ${{ steps.evaluate.outputs.appendix }}\n stop_reason: ${{ steps.evaluate.outputs.stop_reason }}\n attempts: ${{ steps.evaluate.outputs.attempts }}\n max_attempts: ${{ steps.evaluate.outputs.max_attempts }}\n security_blocked: ${{ steps.security_gate.outputs.blocked }}\n security_reason: ${{ steps.security_gate.outputs.reason }}\n+ trigger_reason: ${{ steps.evaluate.outputs.trigger_reason }}\n+ trigger_job: ${{ steps.evaluate.outputs.trigger_job }}\n+ trigger_step: ${{ steps.evaluate.outputs.trigger_step }}\n+ attempt_number: ${{ steps.evaluate.outputs.attempt_number }}\n steps:\n - name: Checkout (for security gate)\n uses: actions/checkout@v4\n with:\n sparse-checkout: |\n .github/scripts/prompt_injection_guard.js\n sparse-checkout-cone-mode: false\n \n - name: Security gate - prompt injection guard\n id: security_gate\n uses: actions/github-script@v7\n with:\n github-token: ${{ secrets.GITHUB_TOKEN }}\n script: |\n const fs = require('fs');\n const guardPath = './.github/scripts/prompt_injection_guard.js';\n \n // Check if guard exists (may not exist on older branches)\n if (!fs.existsSync(guardPath)) {\n core.info('Prompt injection guard not found, skipping security check.');\n core.setOutput('blocked', 'false');\n core.setOutput('reason', 'guard-not-found');\n return;\n }\n \n@@ -86,52 +90,56 @@ jobs:\n actor: run.actor?.login || context.actor,\n promptContent: pr.body || '',\n core,\n });\n \n core.setOutput('blocked', String(result.blocked));\n core.setOutput('reason', result.reason);\n \n if (result.blocked) {\n core.setFailed(`Security gate blocked: ${result.reason}`);\n }\n \n - name: Evaluate workflow_run\n id: evaluate\n uses: actions/github-script@v7\n with:\n script: |\n const run = context.payload.workflow_run;\n const outputs = {\n should_run: 'false',\n pr_number: '',\n head_ref: '',\n head_sha: '',\n appendix: '',\n stop_reason: '',\n+ trigger_reason: '',\n+ trigger_job: '',\n+ trigger_step: '',\n attempts: '0',\n max_attempts: '3',\n+ attempt_number: '0',\n };\n \n const stop = (reason, stopReason = '') => {\n core.info(`Autofix loop skipped: ${reason}.`);\n outputs.stop_reason = stopReason || reason;\n for (const [key, value] of Object.entries(outputs)) {\n core.setOutput(key, value);\n }\n };\n \n if (!run) {\n return stop('missing workflow_run payload');\n }\n \n if ((run.conclusion || '').toLowerCase() === 'success') {\n return stop('upstream Gate succeeded');\n }\n \n if ((run.event || '').toLowerCase() !== 'pull_request') {\n return stop(`unsupported event type: ${run.event || 'unknown'}`);\n }\n \n const prInfo = Array.isArray(run.pull_requests) ? run.pull_requests[0] : undefined;\n if (!prInfo?.number) {\n return stop('no pull request context on workflow_run');\n@@ -180,97 +188,135 @@ jobs:\n }\n \n const jobs = await github.paginate(github.rest.actions.listJobsForWorkflowRun, {\n owner,\n repo,\n run_id: run.id,\n per_page: 100,\n });\n \n const workflowFile = 'agents-autofix-loop.yml';\n const maxAttempts = Number(outputs.max_attempts);\n const previousRuns = await github.paginate(github.rest.actions.listWorkflowRuns, {\n owner,\n repo,\n workflow_id: workflowFile,\n head_sha: run.head_sha,\n per_page: 100,\n status: 'completed',\n });\n \n const attemptCount = previousRuns.length + 1;\n outputs.attempts = String(attemptCount);\n outputs.max_attempts = String(maxAttempts);\n \n const failingJobs = [];\n+ let triggerReason = '';\n+ let triggerJob = '';\n+ let triggerStep = '';\n+\n+ const classifyReason = (text = '') => {\n+ const value = text.toLowerCase();\n+ if (/(mypy|type[\\s-]*check|typecheck|pyright)/.test(value)) return 'mypy';\n+ if (/(pytest|test)/.test(value)) return 'pytest';\n+ if (/(lint|ruff|flake|format)/.test(value)) return 'lint';\n+ return '';\n+ };\n+\n for (const job of jobs) {\n const conclusion = (job.conclusion || job.status || '').toLowerCase();\n if (!conclusion || ['success', 'skipped'].includes(conclusion)) {\n continue;\n }\n \n+ const jobReason = classifyReason(job.name || '');\n+ if (!triggerReason && jobReason) {\n+ triggerReason = jobReason;\n+ triggerJob = job.name || job.id || '';\n+ }\n+\n const failingSteps =\n Array.isArray(job.steps)\n ? job.steps\n .filter((step) => {\n const stepConclusion = (step.conclusion || step.status || '').toLowerCase();\n return stepConclusion && !['success', 'skipped'].includes(stepConclusion);\n })\n- .map((step) => `${step.name} (${step.conclusion || step.status || 'unknown'})`)\n+ .map((step) => {\n+ const stepLabel = `${step.name} (${step.conclusion || step.status || 'unknown'})`;\n+ const stepReason = classifyReason(step.name || '');\n+ if (!triggerReason && stepReason) {\n+ triggerReason = stepReason;\n+ triggerJob = triggerJob || job.name || job.id || '';\n+ triggerStep = step.name || '';\n+ }\n+ return stepLabel;\n+ })\n : [];\n \n const detailLines = [`- ${job.name} (${job.conclusion || job.status || 'unknown'})`];\n if (failingSteps.length > 0) {\n detailLines.push(` - steps: ${failingSteps.join('; ')}`);\n }\n failingJobs.push(detailLines.join('\\n'));\n }\n \n+ if (!triggerReason && failingJobs.length > 0) {\n+ triggerReason = 'unknown';\n+ if (jobs[0]) {\n+ triggerJob = jobs[0].name || jobs[0].id || '';\n+ }\n+ }\n+\n const appendixLines = [\n `Gate run: ${run.html_url || run.id}`,\n `Conclusion: ${run.conclusion || run.status || 'unknown'}`,\n `PR: #${prNumber}`,\n `Head SHA: ${headSha}`,\n `Autofix attempts for this head: ${attemptCount} / ${maxAttempts}`,\n 'Fix scope: src/, tests/, tools/, scripts/, agents/, templates/, .github/',\n ];\n \n if (failingJobs.length > 0) {\n appendixLines.push('Failing jobs:', ...failingJobs);\n } else {\n appendixLines.push('Failing jobs: none reported.');\n }\n \n outputs.appendix = appendixLines.join('\\n');\n+ outputs.trigger_reason = triggerReason || '';\n+ outputs.trigger_job = triggerJob || '';\n+ outputs.trigger_step = triggerStep || '';\n \n if (attemptCount > maxAttempts) {\n return stop(`autofix attempt limit reached (${attemptCount} > ${maxAttempts})`, 'max_attempts');\n }\n \n outputs.should_run = 'true';\n outputs.head_ref = prData.head.ref || '';\n outputs.head_sha = headSha;\n+ outputs.attempt_number = String(attemptCount);\n \n for (const [key, value] of Object.entries(outputs)) {\n core.setOutput(key, value);\n }\n \n autofix:\n needs: prepare\n if: needs.prepare.outputs.should_run == 'true'\n name: Run Codex autofix\n uses: ./.github/workflows/reusable-codex-run.yml\n with:\n prompt_file: .github/codex/prompts/autofix_from_ci_failure.md\n mode: autofix\n pr_number: ${{ needs.prepare.outputs.pr_number }}\n appendix: ${{ needs.prepare.outputs.appendix }}\n secrets:\n CODEX_AUTH_JSON: ${{ secrets.CODEX_AUTH_JSON }}\n WORKFLOWS_APP_ID: ${{ secrets.WORKFLOWS_APP_ID }}\n WORKFLOWS_APP_PRIVATE_KEY: ${{ secrets.WORKFLOWS_APP_PRIVATE_KEY }}\n \n needs-human:\n needs: prepare\n if: needs.prepare.outputs.stop_reason == 'max_attempts'\n name: Flag for human follow-up\n runs-on: ubuntu-latest\n@@ -297,25 +343,153 @@ jobs:\n repo,\n issue_number: prNumber,\n labels: ['needs-human'],\n }).catch((error) => {\n core.warning(`Failed to add label: ${error.message}`);\n });\n \n const body = [\n 'Autofix attempts exhausted for this head.',\n `Attempts: ${attempts} / ${maxAttempts}`,\n '',\n 'Latest Gate summary:',\n '```',\n appendix || 'No run context available.',\n '```',\n '',\n 'Please investigate manually.',\n ].join('\\n');\n \n await github.rest.issues.createComment({\n owner,\n repo,\n issue_number: prNumber,\n body,\n });\n+\n+ metrics:\n+ name: Emit autofix metrics\n+ needs:\n+ - prepare\n+ - autofix\n+ if: always() && needs.prepare.outputs.pr_number != '' && needs.prepare.outputs.pr_number != '0'\n+ runs-on: ubuntu-latest\n+ environment: agent-standard\n+ permissions:\n+ contents: read\n+ pull-requests: read\n+ actions: read\n+ steps:\n+ - name: Emit metrics to summary and NDJSON\n+ id: emit\n+ uses: actions/github-script@v7\n+ with:\n+ github-token: ${{ secrets.GITHUB_TOKEN }}\n+ script: |\n+ const prNumber = Number('${{ needs.prepare.outputs.pr_number }}') || 0;\n+ if (!prNumber) {\n+ core.info('No PR number resolved; skipping metrics emission.');\n+ return;\n+ }\n+\n+ const attemptNumber =\n+ Number('${{ needs.prepare.outputs.attempt_number }}') ||\n+ Number('${{ needs.prepare.outputs.attempts }}') ||\n+ 0;\n+ const triggerReason = '${{ needs.prepare.outputs.trigger_reason }}' || 'unknown';\n+ const triggerJob = '${{ needs.prepare.outputs.trigger_job }}';\n+ const triggerStep = '${{ needs.prepare.outputs.trigger_step }}';\n+ const initialHead = '${{ needs.prepare.outputs.head_sha }}';\n+ const headRef = '${{ needs.prepare.outputs.head_ref }}';\n+ const shouldRun = '${{ needs.prepare.outputs.should_run }}' === 'true';\n+ const autofixResult = '${{ needs.autofix.result }}';\n+\n+ const { owner, repo } = context.repo;\n+\n+ let currentHead = initialHead;\n+ try {\n+ const { data: pr } = await github.rest.pulls.get({\n+ owner,\n+ repo,\n+ pull_number: prNumber,\n+ });\n+ currentHead = pr.head?.sha || currentHead;\n+ } catch (error) {\n+ core.warning(`Failed to refresh PR head SHA: ${error.message}`);\n+ }\n+\n+ const fixApplied = Boolean(shouldRun && initialHead && currentHead && currentHead !== initialHead);\n+\n+ let gateResultAfter = 'unknown';\n+ if (headRef) {\n+ try {\n+ const runs = await github.paginate(github.rest.actions.listWorkflowRuns, {\n+ owner,\n+ repo,\n+ workflow_id: 'pr-00-gate.yml',\n+ head_branch: headRef,\n+ per_page: 50,\n+ });\n+\n+ const matching = runs.find((run) => run.head_sha === currentHead) || runs[0];\n+ if (matching) {\n+ gateResultAfter = matching.conclusion || matching.status || 'unknown';\n+ }\n+ } catch (error) {\n+ core.warning(`Failed to query Gate runs: ${error.message}`);\n+ }\n+ }\n+\n+ const metrics = {\n+ workflow: 'agents-autofix-loop',\n+ pr_number: prNumber,\n+ attempt_number: attemptNumber,\n+ trigger_reason: triggerReason || 'unknown',\n+ trigger_job: triggerJob || '',\n+ trigger_step: triggerStep || '',\n+ fix_applied: fixApplied,\n+ gate_result_after: gateResultAfter,\n+ autofix_result: autofixResult || '',\n+ timestamp: new Date().toISOString(),\n+ };\n+\n+ const summaryTable = [\n+ ['PR', `#${prNumber}`],\n+ ['Attempt', String(attemptNumber)],\n+ ['Trigger reason', triggerReason || 'unknown'],\n+ ['Trigger job', triggerJob || ''],\n+ ['Trigger step', triggerStep || ''],\n+ ['Fix applied', String(fixApplied)],\n+ ['Gate result after', gateResultAfter],\n+ ['Autofix job result', autofixResult || 'unknown'],\n+ ];\n+\n+ core.info(`Autofix metrics: ${JSON.stringify(metrics, null, 2)}`);\n+\n+ const tableRows = [\n+ [\n+ { data: 'Key', header: true },\n+ { data: 'Value', header: true },\n+ ],\n+ ...summaryTable.map(([key, value]) => [key, String(value)]),\n+ ];\n+\n+ await core.summary\n+ .addHeading('Autofix loop metrics', 2)\n+ .addTable(tableRows)\n+ .addSeparator()\n+ .write();\n+\n+ const fs = require('fs');\n+ const metricsPath = 'autofix-metrics.ndjson';\n+ fs.appendFileSync(metricsPath, JSON.stringify(metrics) + '\\n');\n+ core.setOutput('metrics_file', metricsPath);\n+\n+ - name: Upload autofix metrics artifact\n+ if: steps.emit.outputs.metrics_file != ''\n+ uses: actions/upload-artifact@v4\n+ with:\n+ name: autofix-metrics-history\n+ path: ${{ steps.emit.outputs.metrics_file }}\n+ if-no-files-found: error\n+ retention-days: 30\n+ overwrite: true\n","external_storage_diff",{"_741":742,"_743":-5},"files_modified","lines_added",175,"lines_removed","commit_message","Add metrics emission to autofix loop workflow","additional_parent_commit_shas","file_id","file_00000000636871f7962ef141305df607","ttl",{"_104":316,"_53":96,"_108":316,"_746":747,"_748":749,"_750":751,"_143":-5,"_130":752},[95],"input_items",[772,773,774,775,776,777,778,779,780,781,782,783,784,785],"external_post_config",{"_753":754,"_249":180,"_755":294,"_260":-5,"_728":243,"_756":18,"_757":-5,"_758":-5,"_759":760,"_761":762,"_763":-5,"_764":-5,"_765":766,"_767":18,"_768":70,"_769":65,"_770":18,"_771":-5},"user_model_slug","slug",1766576134.846686,"installation_id",71148695,"pr_number","enable_internal_github_app_routing","gitlab_service_account_project_id","review_trigger","comment_id",3689552899,"comment_type","issue","pr_write_guard_token","pending_pr_reaction_id","pending_comment_reaction_id",320862326,"comment_if_no_findings","comment_on_error","share_url","is_parallel_review","review_summary_id",{"_104":700,"_108":316,"_347":803},{"_301":302,"_303":304,"_800":308,"_801":140,"_312":-5,"_104":802},{"_104":786,"_303":799,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":798,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":790,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":797,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":796,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":795,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":794,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":793,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":792,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":791,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":790,"_337":-5,"_788":-5,"_789":-5},{"_104":786,"_303":787,"_337":-5,"_788":-5,"_789":-5},"pull_request_comment","","side","line","@codex Your objective is to satisfy the **Acceptance Criteria** by completing each **Task** within the defined **Scope**.\\n\\n**This round you MUST:**\\n1. Implement actual code or test changes that advance at least one incomplete task toward acceptance.\\n2. Commit meaningful source code (.py, .yml, .js, etc.)—not just status/docs updates.\\n3. Mark a task checkbox complete ONLY after verifying the implementation works.\\n4. **POST A REPLY COMMENT** with completed checkboxes using the **EXACT TEXT** from the lists below.\\n\\n**CRITICAL - Checkbox Format:**\\nWhen posting your reply, copy the **exact checkbox text** from the Tasks and Acceptance Criteria sections below. Do NOT paraphrase or summarize. The automation matches text exactly.\\n\\nExample format for your reply:","**Keepalive 2** `mjjv2wvzxuqhpx` worker: worker skipped – head b1bbc7af98f1.","\nKeepalive loop status for **PR #95**\n\n- Action: **run** (codex-run-failed)\n- Gate conclusion: **success**\n- Tasks: **4/24 complete**\n- Iteration: **0/5**\n- Keepalive enabled: **yes**\n- Autofix enabled: **no**\n\n","### Issue #93: Add workflow execution metrics and observability dashboard\n\n\n## Automated Status Summary\n#### Scope\nContext / problem:\n - The agent workflows (keepalive-loop, autofix-loop, verifier) run frequently but there's no visibility into:\n - How many iterations each PR takes to complete\n - Success vs failure rates for autofix attempts\n - Which stop conditions are triggered most often\n - Average time from PR open to tasks-complete\n - Which types of failures autofix can vs cannot fix\n - Debugging loop behavior requires manually inspecting workflow run logs.\n - There's no historical trend data to identify regressions or improvements.\n Goal:\n - Add lightweight metrics collection to agent workflows.\n - Create a metrics summary that can be viewed in GitHub Actions job summaries.\n - Store historical data in a JSON artifact or repository file for trend analysis.\n\n#### Tasks\n- [ ] Add metrics emission to keepalive-loop workflow:\n- [ ] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [ ] Write to GITHUB_STEP_SUMMARY in structured format\n- [ ] Append to metrics artifact (ndjson format)\n- [ ] Add metrics emission to autofix-loop workflow:\n- [ ] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [ ] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\n#### Acceptance Criteria\n- [ ] Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n - [ ] Metrics are persisted as artifacts for at least 30 days.\n - [ ] Weekly summary report is automatically generated and posted.\n - [ ] Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"\n\n\n#### Full Issue Text\n\nTopic GUID: d9b4d781-dcd2-58d6-aa9a-c414bb617fe0\n\n## Why\nContext / problem:\n - The agent workflows (keepalive-loop, autofix-loop, verifier) run frequently but there's no visibility into:\n - How many iterations each PR takes to complete\n - Success vs failure rates for autofix attempts\n - Which stop conditions are triggered most often\n - Average time from PR open to tasks-complete\n - Which types of failures autofix can vs cannot fix\n - Debugging loop behavior requires manually inspecting workflow run logs.\n - There's no historical trend data to identify regressions or improvements.\n Goal:\n - Add lightweight metrics collection to agent workflows.\n - Create a metrics summary that can be viewed in GitHub Actions job summaries.\n - Store historical data in a JSON artifact or repository file for trend analysis.\n\n## Tasks\n- [ ] Add metrics emission to keepalive-loop workflow:\n- [ ] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [ ] Write to GITHUB_STEP_SUMMARY in structured format\n- [ ] Append to metrics artifact (ndjson format)\n- [ ] Add metrics emission to autofix-loop workflow:\n- [ ] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [ ] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\n## Acceptance criteria\n- Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n - Metrics are persisted as artifacts for at least 30 days.\n - Weekly summary report is automatically generated and posted.\n - Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"\n\n## Implementation notes\n_Not provided._\n\n---\nSynced by [workflow run](https://github.com/stranske/Workflows/actions/runs/20483833858).","**Summary**\n* Captured keepalive-loop runtime start timestamp to support duration reporting downstream outputs. [.github/workflows/agents-keepalive-loop.ymlL20-L74](https://github.com/stranske/Workflows/blob/b1bbc7af98f18cdc1505501458fcb35ba7d62345/.github/workflows/agents-keepalive-loop.yml#L20-L74)\n* Added a metrics emission step that writes structured keepalive metrics to the step summary, records NDJSON, and uploads a 30-day retention artifact for later aggregation. [.github/workflows/agents-keepalive-loop.ymlL89-L175](https://github.com/stranske/Workflows/blob/b1bbc7af98f18cdc1505501458fcb35ba7d62345/.github/workflows/agents-keepalive-loop.yml#L89-L175)\n\n**Testing**\n* ✅ `python - <<'PY'\\nimport yaml\\npath='.github/workflows/agents-keepalive-loop.yml'\\nwith open(path, 'r', encoding='utf-8') as f:\\n yaml.safe_load(f)\\nprint('ok')\\nPY` \n\n#### Tasks\n- [x] Add metrics emission to keepalive-loop workflow:\n- [x] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [x] Write to GITHUB_STEP_SUMMARY in structured format\n- [x] Append to metrics artifact (ndjson format)\n- [ ] Add metrics emission to autofix-loop workflow:\n- [ ] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [ ] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\n#### Acceptance criteria\n- [ ] - Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n- [ ] - Metrics are persisted as artifacts for at least 30 days.\n- [ ] - Weekly summary report is automatically generated and posted.\n- [ ] - Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"\n\n [View task →](https://chatgpt.com/s/cd_694bbd3585a881919c5161da029f5e0b)","","## Pull request overview\n\nThis PR adds a bootstrap placeholder file for codex issue #93, following the established repository pattern for tracking codex issues.\n\n- Adds a new markdown file `agents/codex-93.md` with a bootstrap comment\n\n\n\n\n\n---\n\n💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.","Gate fast-pass: docs-only change detected; heavy checks skipped.\n\n","\nKeepalive loop status for **PR #95**\n\n- Action: **run** (codex-run-failed)\n- Gate conclusion: **success**\n- Tasks: **0/24 complete**\n- Iteration: **0/5**\n- Keepalive enabled: **yes**\n- Autofix enabled: **no**\n\n","\n## Automated Status Summary\n**Head SHA:** 1e1fd2506f07a94a0f257de411ed4ff3a7a97ffa\n**Latest Runs:** ⏳ pending — Gate\n**Required contexts:** Gate / gate, Health 45 Agents Guard / Enforce agents workflow protections\n**Required:** core tests (3.11): ⏳ pending, core tests (3.12): ⏳ pending, docker smoke: ⏳ pending, gate: ⏳ pending\n\n| Workflow / Job | Result | Logs |\n|----------------|--------|------|\n| _(no jobs reported)_ | ⏳ pending | — |\n\n_Updated automatically; will refresh on subsequent CI/Docker completions._\n\n\n---\n### Keepalive checklist\n\n#### Scope\n- [ ] Context / problem:\n- [ ] - The agent workflows (keepalive-loop, autofix-loop, verifier) run frequently but there's no visibility into:\n- [ ] - How many iterations each PR takes to complete\n- [ ] - Success vs failure rates for autofix attempts\n- [ ] - Which stop conditions are triggered most often\n- [ ] - Average time from PR open to tasks-complete\n- [ ] - Which types of failures autofix can vs cannot fix\n- [ ] - Debugging loop behavior requires manually inspecting workflow run logs.\n- [ ] - There's no historical trend data to identify regressions or improvements.\n- [ ] Goal:\n- [ ] - Add lightweight metrics collection to agent workflows.\n- [ ] - Create a metrics summary that can be viewed in GitHub Actions job summaries.\n- [ ] - Store historical data in a JSON artifact or repository file for trend analysis.\n\n#### Tasks\n- [x] Add metrics emission to keepalive-loop workflow:\n- [x] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [x] Write to GITHUB_STEP_SUMMARY in structured format\n- [x] Append to metrics artifact (ndjson format)\n- [ ] Add metrics emission to autofix-loop workflow:\n- [ ] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [ ] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\n#### Acceptance criteria\n- [ ] - Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n- [ ] - Metrics are persisted as artifacts for at least 30 days.\n- [ ] - Weekly summary report is automatically generated and posted.\n- [ ] - Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"","base_ref","head_ref","pull_request_info",[804],{"_708":57,"_57":805},"\n\n\n\n@codex Your objective is to satisfy the **Acceptance Criteria** by completing each **Task** within the defined **Scope**.\n\n**This round you MUST:**\n1. Implement actual code or test changes that advance at least one incomplete task toward acceptance.\n2. Commit meaningful source code (.py, .yml, .js, etc.)—not just status/docs updates.\n3. Mark a task checkbox complete ONLY after verifying the implementation works.\n4. **POST A REPLY COMMENT** with completed checkboxes using the **EXACT TEXT** from the lists below.\n\n**CRITICAL - Checkbox Format:**\nWhen posting your reply, copy the **exact checkbox text** from the Tasks and Acceptance Criteria sections. Do NOT paraphrase or summarize. The automation matches text exactly.\n\n**Example reply format:**\n```\n- [x] Implemented volatility-adjusted trend analysis for Fund A\n- [x] Updated config/demo.yml with new parameters\n- [ ] Add multi-period analysis for Fund B\n\nAcceptance Criteria:\n- [x] Fund A analysis produces correct CAGR and Sharpe ratio\n- [ ] Fund B analysis includes multi-period metrics\n```\n\n**DO NOT:**\n- Commit only status files, markdown summaries, or documentation when tasks require code.\n- Re-post checklists without making implementation progress.\n- Close the round without source-code changes when acceptance criteria require them.\n- Paraphrase or shorten checkbox text—copy it exactly for tracking to work.\n\nReview the Scope/Tasks/Acceptance below, identify the next incomplete task that requires code, implement it, then **post a reply comment** with the completed items using their **exact original text**.\n\n#### Scope\n- [ ] Context / problem:\n- [ ] - The agent workflows (keepalive-loop, autofix-loop, verifier) run frequently but there's no visibility into:\n- [ ] - How many iterations each PR takes to complete\n- [ ] - Success vs failure rates for autofix attempts\n- [ ] - Which stop conditions are triggered most often\n- [ ] - Average time from PR open to tasks-complete\n- [ ] - Which types of failures autofix can vs cannot fix\n- [ ] - Debugging loop behavior requires manually inspecting workflow run logs.\n- [ ] - There's no historical trend data to identify regressions or improvements.\n- [ ] Goal:\n- [ ] - Add lightweight metrics collection to agent workflows.\n- [ ] - Create a metrics summary that can be viewed in GitHub Actions job summaries.\n- [ ] - Store historical data in a JSON artifact or repository file for trend analysis.\n\n#### Tasks\n- [x] Add metrics emission to keepalive-loop workflow:\n- [x] Emit: pr_number, iteration_count, stop_reason, gate_conclusion, tasks_total, tasks_completed, duration_seconds\n- [x] Write to GITHUB_STEP_SUMMARY in structured format\n- [x] Append to metrics artifact (ndjson format)\n- [ ] Add metrics emission to autofix-loop workflow:\n- [ ] Emit: pr_number, attempt_number, trigger_reason (mypy/pytest/lint), fix_applied (bool), gate_result_after\n- [ ] Track which job/step triggered the autofix\n- [ ] Add metrics emission to verifier workflow:\n- [ ] Emit: pr_number, verdict (pass/fail), issues_created, acceptance_criteria_count, checks_run\n- [ ] Create a metrics aggregation script (scripts/aggregate_agent_metrics.py):\n- [ ] Read ndjson metrics files\n- [ ] Compute summary statistics (success rate, avg iterations, common stop reasons)\n- [ ] Output markdown summary suitable for weekly reports\n- [ ] Add a scheduled workflow (weekly) to:\n- [ ] Download recent metrics artifacts\n- [ ] Run aggregation script\n- [ ] Post summary to a tracking issue or wiki page\n- [ ] Add metrics visualization to PR comments:\n- [ ] Show iteration progress bar in keepalive summary comment\n- [ ] Show autofix attempt count and outcomes\n\n#### Acceptance Criteria\n- [ ] - Each agent workflow run produces structured metrics in GITHUB_STEP_SUMMARY.\n- [ ] - Metrics are persisted as artifacts for at least 30 days.\n- [ ] - Weekly summary report is automatically generated and posted.\n- [ ] - Metrics can answer: \"What percentage of PRs complete via keepalive without human intervention?\"\n\n**Head SHA:** 6cf70d4ec983bf9eecdc4d58ea077f34ba2d8926\n**Latest Runs:** ✅ success — Gate\n**Required:** gate: ✅ success\n\n| Workflow / Job | Result | Logs |\n|----------------|--------|------|\n| Agents PR meta manager | ⏳ queued | [View run](https://github.com/stranske/Workflows/actions/runs/20485330939) |\n| CI Autofix Loop | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301395) |\n| Gate | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301389) |\n| Health 40 Sweep | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301367) |\n| Health 44 Gate Branch Protection | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301341) |\n| Health 45 Agents Guard | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301315) |\n| Health 50 Security Scan | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301347) |\n| Maint 52 Validate Workflows | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301357) |\n| PR 11 - Minimal invariant CI | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301324) |\n| Selftest CI | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20485301334) 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