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the workflow and CI system for my GitHub repos","workspace_dir","/workspace","agent_network_access",{"_285":286,"_287":80,"_288":289,"_290":-5,"_291":-5,"_292":-5},"codex_github_direct","github_connector_id","enable_gitlab_webhooks","repos",[243],"setup",[284],"maintenance_setup",[284],"repo_map",{"_243":244},"env_vars",{"_225":226,"_227":228,"_229":230,"_231":232,"_233":234,"_235":236,"_237":238,"_239":240,"_241":242},"secrets",{},"secrets_with_domains","task_count",308,"creator_id","user-5ZKnECQNTRTorYuavfTvQlgZ","share_settings","workspace","share_targets",[],1765943941.570843,"auto_setup_settings",{"_224":18},"cache_settings",{"_221":70,"_222":223},"etag","\"0601c94a-0000-0200-0000-6953f4dd0000\"","enable_authtranslator","enable_docker_in_docker","post_setup_cache_enabled","cache_invalidation_key","","use_auto_setup","CODEX_ENV_PYTHON_VERSION","3.12","CODEX_ENV_NODE_VERSION","20","CODEX_ENV_RUBY_VERSION","3.4.4","CODEX_ENV_RUST_VERSION","1.89.0","CODEX_ENV_GO_VERSION","1.24.3","CODEX_ENV_BUN_VERSION","1.2.14","CODEX_ENV_PHP_VERSION","8.4","CODEX_ENV_JAVA_VERSION","21","CODEX_ENV_SWIFT_VERSION","6.1","github-1117447156",{"_53":245,"_161":246,"_247":248,"_249":180,"_250":251,"_252":253,"_254":255,"_256":257,"_258":259,"_260":75,"_261":-5,"_262":-5,"_263":-5,"_264":-5,"_265":-5,"_266":-5,"_267":-5,"_268":269,"_270":-5,"_66":271},"1117447156","Workflows","owner",{"_276":277,"_53":278,"_104":279,"_280":281,"_282":283},"repository_full_name","clone_url","https://github.com/stranske/Workflows.git","default_branch","main","git_commits_url","https://api.github.com/repos/stranske/Workflows/git/commits{/sha}","git_refs_url","https://api.github.com/repos/stranske/Workflows/git/refs{/sha}","git_url","git://github.com/stranske/Workflows.git","visibility","archived","allow_auto_merge","allow_merge_commit","allow_rebase_merge","allow_squash_merge","allow_update_branch","language","size",1216,"master_branch",{"_272":18,"_273":18,"_274":18,"_275":18},"admin","maintain","push","pull","login","stranske",23046322,"User","avatar_url","https://avatars.githubusercontent.com/u/23046322?v=4","url","https://api.github.com/users/stranske","#!/usr/bin/env bash\nset -euo pipefail\n\nLOG_PREFIX=\"[workflows-codex-env]\"\nlog() { printf \"%s %s\\n\" \"$LOG_PREFIX\" \"$*\"; }\nwarn() { printf \"%s [warn] %s\\n\" \"$LOG_PREFIX\" \"$*\" >&2; }\ndie() { printf \"%s [error] %s\\n\" \"$LOG_PREFIX\" \"$*\" >&2; exit 1; }\n\n# -----------------------------\n# Locate Workflows repo root robustly (Codex scripts run from /tmp)\n# -----------------------------\nis_workflows_root() {\n local d=\"$1\"\n [[ -f \"${d}/pyproject.toml\" ]] || return 1\n [[ -f \"${d}/scripts/dev_check.sh\" ]] || return 1\n grep -q 'name = \"workflows\"' \"${d}/pyproject.toml\" 2>/dev/null || return 1\n return 0\n}\n\nfind_repo_root() {\n # 1) Prefer git root, but verify it's the Workflows repo.\n if command -v git >/dev/null 2>&1; then\n if git rev-parse --show-toplevel >/dev/null 2>&1; then\n local gr\n gr=\"$(git rev-parse --show-toplevel)\"\n if is_workflows_root \"${gr}\"; then\n echo \"${gr}\"\n return 0\n fi\n fi\n fi\n\n # 2) Walk upwards from current directory.\n local d=\"${PWD}\"\n while [[ \"${d}\" != \"/\" ]]; do\n if is_workflows_root \"${d}\"; then\n echo \"${d}\"\n return 0\n fi\n d=\"$(dirname \"${d}\")\"\n done\n\n # 3) Last resort: search common mount points.\n local bases=(\"${PWD}\" \"${GITHUB_WORKSPACE:-}\" \"/workspace\" \"/repo\" \"${HOME:-/home}\" \"/tmp\")\n local b\n for b in \"${bases[@]}\"; do\n [[ -n \"${b}\" && -d \"${b}\" ]] || continue\n while IFS= read -r py; do\n local cand\n cand=\"$(cd \"$(dirname \"${py}\")\" && pwd)\"\n if is_workflows_root \"${cand}\"; then\n echo \"${cand}\"\n return 0\n fi\n done < <(find \"${b}\" -maxdepth 5 -type f -name pyproject.toml 2>/dev/null | head -n 100)\n done\n\n return 1\n}\n\nREPO_ROOT=\"$(find_repo_root || true)\"\n[[ -n \"${REPO_ROOT}\" ]] || die \"Could not locate Workflows repo root (pyproject.toml + scripts/dev_check.sh + name='workflows').\"\n\ncd \"${REPO_ROOT}\"\nlog \"Repo root: ${REPO_ROOT}\"\n\n# Git sanity (best-effort)\nif command -v git >/dev/null 2>&1; then\n git config --global --add safe.directory \"${REPO_ROOT}\" >/dev/null 2>&1 || true\n git config --global user.name \"${GIT_AUTHOR_NAME:-Codex}\" >/dev/null 2>&1 || true\n git config --global user.email \"${GIT_AUTHOR_EMAIL:-codex@users.noreply.github.com}\" >/dev/null 2>&1 || true\nfi\n\n# -----------------------------\n# Python + venv (repo requires 3.11+)\n# -----------------------------\nPYTHON_BIN=\"${PYTHON_BIN:-python3}\"\ncommand -v \"${PYTHON_BIN}\" >/dev/null 2>&1 || die \"python3 not found on PATH.\"\n\n\"${PYTHON_BIN}\" - <<'PY'\nimport sys\nif sys.version_info < (3, 11):\n raise SystemExit(f\"Python 3.11+ required; found {sys.version.split()[0]}\")\nprint(\"Python OK:\", sys.version.split()[0])\nPY\n\nVENV_PATH=\"${REPO_ROOT}/.venv\"\nif [[ ! -d \"${VENV_PATH}\" ]]; then\n log \"Creating venv at ${VENV_PATH}\"\n \"${PYTHON_BIN}\" -m venv \"${VENV_PATH}\"\nfi\n# shellcheck disable=SC1091\nsource \"${VENV_PATH}/bin/activate\"\n\npython -m pip install -U pip setuptools wheel >/dev/null\n\n# -----------------------------\n# Optional lockfile sync (if present)\n# -----------------------------\npython -m pip install -U uv >/dev/null || true\n\nLOCK_FILE=\"${REPO_ROOT}/requirements.lock\"\nif [[ -f \"${LOCK_FILE}\" ]]; then\n log \"Found requirements.lock; syncing with uv (best-effort)\"\n uv pip sync \"${LOCK_FILE}\" || true\nelse\n log \"No requirements.lock found (expected for this repo).\"\nfi\n\n# -----------------------------\n# Install pyproject dependencies + dev extras WITHOUT installing the repo itself\n# (Avoids editable-build failure due to flat-layout multiple top-level packages.)\n# -----------------------------\nlog \"Installing deps + dev tools from pyproject.toml (no editable install)...\"\npython - <<'PY'\nfrom __future__ import annotations\nfrom pathlib import Path\nimport subprocess, sys\n\ntry:\n import tomllib # py3.11+\nexcept ModuleNotFoundError:\n subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", \"tomli\"])\n import tomli as tomllib # type: ignore\n\ndata = tomllib.loads(Path(\"pyproject.toml\").read_text(encoding=\"utf-8\"))\nproj = data.get(\"project\", {}) or {}\n\ndeps = list(proj.get(\"dependencies\", []) or [])\ndev = list((proj.get(\"optional-dependencies\", {}) or {}).get(\"dev\", []) or [])\n\n# de-dup while preserving order\nseen = set()\npkgs = []\nfor p in deps + dev:\n if p not in seen:\n pkgs.append(p)\n seen.add(p)\n\nif pkgs:\n subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", *pkgs])\nelse:\n print(\"[workflows-codex-env] [warn] No dependencies/dev extras found in pyproject.toml.\")\nPY\n\n# -----------------------------\n# Ensure required test packages (the ones your checker flags as missing)\n# -----------------------------\nlog \"Ensuring required test packages are installed...\"\npython - <<'PY'\nimport importlib, subprocess, sys\n\nrequired = {\n \"pytest\": \"pytest\",\n \"coverage\": \"coverage\",\n \"hypothesis\": \"hypothesis\",\n \"pandas\": \"pandas\",\n \"numpy\": \"numpy\",\n \"pydantic\": \"pydantic\",\n \"yaml\": \"PyYAML\",\n \"requests\": \"requests\",\n \"jsonschema\": \"jsonschema\",\n}\n\nmissing = []\nfor mod, pkg in required.items():\n try:\n importlib.import_module(mod)\n except Exception:\n missing.append(pkg)\n\nif missing:\n print(\"[workflows-codex-env] Installing missing:\", \" \".join(missing))\n subprocess.check_call([sys.executable, \"-m\", \"pip\", \"install\", *missing])\nelse:\n print(\"[workflows-codex-env] Required packages already present.\")\nPY\n\n# -----------------------------\n# Make local modules importable (agents/, templates/, etc.)\n# -----------------------------\nexport PYTHONPATH=\"${REPO_ROOT}${PYTHONPATH:+:${PYTHONPATH}}\"\n\n# Persist env for interactive shells (best-effort)\nMARKER=\"# >>> Workflows Codex env >>>\"\nif [[ -w \"${HOME}/.bashrc\" ]] && ! grep -qs \"${MARKER}\" \"${HOME}/.bashrc\"; then\n {\n echo \"\"\n echo \"${MARKER}\"\n echo \"export WORKFLOWS_REPO_ROOT=\\\"${REPO_ROOT}\\\"\"\n echo \"export VIRTUAL_ENV=\\\"${REPO_ROOT}/.venv\\\"\"\n echo \"export PATH=\\\"${REPO_ROOT}/.venv/bin:\\$PATH\\\"\"\n echo \"export PYTHONPATH=\\\"${REPO_ROOT}\\${PYTHONPATH:+:\\$PYTHONPATH}\\\"\"\n echo \"# <<< Workflows Codex env <<<\"\n } >> \"${HOME}/.bashrc\" || true\nfi\n\n# -----------------------------\n# Optional: run repo dependency checker (should be clean now; don't brick setup if it isn't)\n# -----------------------------\nif [[ -x \"${REPO_ROOT}/scripts/check_test_dependencies.sh\" ]]; then\n log \"Running scripts/check_test_dependencies.sh (non-fatal)\"\n bash \"${REPO_ROOT}/scripts/check_test_dependencies.sh\" || true\nfi\n\nlog \"Setup complete. Common next commands:\"\nlog \" ./scripts/dev_check.sh\"\nlog \" ./scripts/validate_fast.sh\"\n","mode","on","preset_allowlist","allowlist_domains","pypi.org, github.com, files.pythonhosted.org, deb.debian.org, security.ubuntu.com, raw.githubusercontent.com","allowlist_rules","denylist_domains","safe_methods_only","number",317,"https://github.com/stranske/Workflows/pull/317","state","closed","merged","mergeable","draft","title","test: Add unit tests for verifier placeholder filtering helpers","body","\n\n\n\n## Automated Status Summary\n#### Scope\n- [ ] Context / problem:\n- [ ] - The Automated Status Summary in PR bodies currently only shows workflow run results\n- [ ] - When the CLI-based Codex (via `reusable-codex-run.yml`) completes iterations, there's no visibility into:\n- [ ] - What tasks Codex completed in each round\n- [ ] - The final message/output from Codex\n- [ ] - How many files were changed\n- [ ] - Whether commits were pushed successfully\n- [ ] - This makes it hard to track CLI Codex progress vs the UI version\n- [ ] - The keepalive loop evaluation outputs (iteration count, tasks remaining, etc.) are logged but not surfaced to the PR summary\n- [ ] Goal:\n- [ ] - Capture CLI Codex outputs and integrate them into the Automated Status Summary\n- [ ] - Provide visibility into Codex iteration progress and outcomes\n- [ ] - Show what changed in each round\n\n#### Tasks\n- [ ] Update `reusable-codex-run.yml` to emit structured outputs:\n- [ ] Add output for `final-message` from Codex action\n- [ ] Add output for `files-changed` (count of modified files)\n- [ ] Add output for `commits-pushed` (boolean)\n- [ ] Write iteration summary to GITHUB_STEP_SUMMARY\n- [ ] Create new section in PR body for CLI Codex status:\n- [ ] Add `` / `` markers\n- [ ] Show last iteration number and outcome\n- [ ] Show tasks completed this round\n- [ ] Show link to workflow run logs\n- [ ] Update `agents_pr_meta_update_body.js` to populate the new section:\n- [ ] Fetch latest keepalive loop run results\n- [ ] Extract Codex outputs from workflow artifacts or step summaries\n- [ ] Format and insert into PR body\n- [ ] Update `keepalive_loop.js` to pass iteration context to the summary:\n- [ ] Include current iteration number in output\n- [ ] Include tasks remaining count\n- [ ] Include estimated rounds to completion\n- [ ] Add tests for the new integration:\n- [ ] Test output extraction from workflow runs\n- [ ] Test PR body section formatting\n- [ ] Test edge cases (no Codex runs, failed runs, etc.)\n\n#### Acceptance criteria\n- [ ] CLI Codex iterations are visible in the PR body Automated Status Summary\n- [ ] Each iteration shows: round number, tasks attempted, outcome, and link to logs\n- [ ] The summary updates automatically after each keepalive loop run\n- [ ] Existing UI Codex tracking (if any) continues to work\n- [ ] **Head SHA:** 377ad77535b1f7f598cc9cf24e9b8bd0b515b0cb\n- [ ] **Latest Runs:** ✅ success — Gate\n- [ ] **Required:** gate: ✅ success\n- [ ] | Workflow / Job | Result | Logs |\n- [ ] |----------------|--------|------|\n- [ ] | Agents PR meta manager | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20492940950) |\n- [ ] | CI Autofix Loop | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20492919138) |\n- [ ] | Gate | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20492919140) |\n- [ ] | Health 40 Sweep | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20492919147) |\n- [ ] | Health 44 Gate Branch Protection | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20492919096) |\n- [ ] | Health 45 Agents Guard | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20492919090) |\n- [ ] | Health 50 Security Scan | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20492919089) |\n- [ ] | Maint 52 Validate Workflows | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20492919112) |\n- [ ] | PR 11 - Minimal invariant CI | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20492919086) |\n- [ ] | Selftest CI | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20492919093) |\n\n**Head SHA:** 077432663a57ee06d5dc7f5b302784243cdfbdce\n**Latest Runs:** ❔ in progress — Gate\n**Required:** gate: ❔ in progress\n\n| Workflow / Job | Result | Logs |\n|----------------|--------|------|\n| Agents PR meta manager | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20600921482) |\n| CI Autofix Loop | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20600914379) |\n| Gate | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20600914455) |\n| Health 40 Sweep | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20600914371) |\n| Health 44 Gate Branch Protection | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20600914386) |\n| Health 45 Agents Guard | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20600914368) |\n| Health 50 Security Scan | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20600914376) |\n| Maint 52 Validate Workflows | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20600914367) |\n| PR 11 - Minimal invariant CI | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20600914387) |\n| Selftest CI | ❔ in progress | [View run](https://github.com/stranske/Workflows/actions/runs/20600914369) |\n| Validate Sync Manifest | ✅ success | [View run](https://github.com/stranske/Workflows/actions/runs/20600914408) |\n","base","head","base_sha","0c608ed3898c4de03b663c62a64903f2c31e0af2","head_sha","f5a81fde86b23deb759c3ca6d77793235e4d691d","head_repo_id","head_repo_full_name","merge_commit_sha","fd234e07fbbacdc056edc4ad64dc7e9fa6c51ca4","comments","diff","user",{"_276":327,"_161":327,"_328":-5,"_280":329,"_53":330},"commits",4,"changed_files",2,"additions",152,"deletions",1,"Copilot","email","https://avatars.githubusercontent.com/in/1143301?v=4",198982749,"events",[],[],"messages",[],{"_104":768,"_769":770,"_771":772,"_773":774,"_775":-5},{"_104":747,"_108":105,"_353":748},{"_104":339,"_340":341},"partial_repo_snapshot","files",[342],{"_343":344,"_345":-5,"_346":347,"_348":-5},"path",".github/scripts/verifier_issue_formatter.js","contents","line_range_contents",[349],"missing_reason",{"_350":326,"_351":352,"_353":354,"_355":70},"line_range_start","line_range_end",611,"content",[356,223,357,358,359,223,360,361,362,363,364,365,366,367,368,369,370,371,372,373,374,223,360,375,376,363,364,377,366,378,379,380,381,374,223,360,382,383,384,385,386,363,364,387,366,388,379,389,390,374,223,360,391,392,363,393,394,395,366,396,397,398,399,223,400,401,402,403,223,404,405,223,406,407,408,374,223,360,409,363,410,411,412,413,414,415,416,366,417,418,223,419,420,421,403,223,422,423,424,403,223,425,426,403,223,427,428,403,223,429,374,223,360,430,431,432,433,434,363,435,436,366,437,438,439,440,441,442,443,444,445,223,446,447,448,449,403,223,450,451,452,453,223,454,455,223,456,457,458,459,460,223,461,462,463,460,223,464,465,466,467,468,469,470,471,472,473,474,460,403,223,475,476,477,223,478,479,223,480,481,482,483,474,223,484,485,486,487,488,489,474,223,490,491,492,474,460,403,223,493,494,495,496,455,497,498,459,460,499,500,403,501,223,502,374,223,360,503,504,505,506,363,507,508,366,509,510,511,223,454,512,513,514,515,469,516,517,483,474,469,518,519,483,474,469,520,521,483,474,469,522,460,403,223,523,374,223,360,524,363,507,525,366,526,510,511,223,454,527,528,514,529,460,403,223,523,374,223,360,530,363,531,532,366,533,534,535,403,536,374,223,360,537,363,538,539,540,541,542,363,410,543,544,545,546,547,548,549,366,550,551,552,553,554,555,556,557,558,559,223,560,561,562,563,564,223,565,566,567,568,569,445,223,570,571,572,573,574,575,403,223,576,577,578,579,580,581,582,583,584,460,403,585,586,587,582,583,460,403,223,588,589,578,579,590,591,592,584,460,403,593,594,591,592,460,403,223,595,596,597,598,599,223,600,601,602,603,604,605,606,607,608,609,610,611,612,613,614,615,616,617,618,619,403,223,620,621,622,623,624,625,626,627,628,629,630,631,632,633,634,635,636,637,638,460,403,223,639,640,641,642,403,643,644,645,646,647,460,403,648,644,649,650,651,460,403,419,644,652,403,223,653,654,223,655,656,657,658,659,660,661,662,223,663,664,665,403,223,666,667,668,617,669,403,223,670,671,672,403,223,673,674,675,676,677,678,617,679,403,223,680,681,682,683,684,685,617,686,403,223,687,688,689,403,223,690,691,692,693,223,694,695,696,697,698,699,700,223,701,702,703,704,705,706,707,445,374,223,360,708,709,363,410,543,546,547,710,548,549,366,711,551,554,555,712,556,557,558,223,713,223,655,714,657,658,659,660,661,662,223,715,716,715,717,718,717,223,715,719,715,720,721,722,223,715,723,715,724,223,691,725,726,223,727,728,729,730,731,732,223,701,702,733,704,707,445,374,223,734,735,736,737,738,739,740,741,742,743,744,745,746],"contains_end_of_file","'use strict';","const {"," parseScopeTasksAcceptanceSections,","} = require('./issue_scope_parser.js');","/**"," * Check if content is a placeholder (missing section marker)."," * These placeholders are generated by the bot when PR/issue lacks structured content."," *"," * @param {string} text - Text to check"," * @returns {boolean} True if text is a placeholder"," */","function isPlaceholderContent(text) {"," const normalized = String(text || '').toLowerCase().trim();"," // Match common placeholder patterns"," return /^\\s*[-*]?\\s*\\[[\\sxX]\\]\\s*(scope|tasks?|acceptance\\s*criteria?)\\s+(section\\s+)?missing\\s+from\\s+source\\s+issue\\.?\\s*$/i.test(normalized) ||"," /section\\s+missing\\s+from\\s+source\\s+issue/i.test(normalized) ||"," /^\\s*n\\s*\\/?\\s*a\\s*$/i.test(normalized) ||"," normalized === '';","}"," * Check if an item looks like a markdown section header that was incorrectly"," * captured as a list item (e.g., \"## Related\" or \"### Notes\")."," * @returns {boolean} True if text looks like a section header","function looksLikeSectionHeader(text) {"," const trimmed = String(text || '').trim();"," // Match markdown headers at start"," return /^#{1,6}\\s+\\w/.test(trimmed);"," * Check if an item looks like a PR/Issue reference link rather than actual criteria."," * Matches patterns like:"," * - \"- PR #123 - Title\""," * - \"- Issue #456 - Description\" "," * - \"PR #789 - Some fix\""," * @returns {boolean} True if text looks like a reference link","function looksLikeReferenceLink(text) {"," // Match \"- PR #N\" or \"- Issue #N\" or just \"PR #N\" / \"Issue #N\" at start"," return /^[-–•]?\\s*(PR|Issue|Pull\\s+Request)\\s*#\\d+/i.test(trimmed);"," * Simple similarity score between two strings (0-1)."," * Uses Jaccard similarity on word sets for fuzzy matching."," * @param {string} a - First string"," * @param {string} b - Second string"," * @returns {number} Similarity score between 0 and 1","function similarityScore(a, b) {"," const normalize = (s) => String(s || '').toLowerCase().replace(/[^\\w\\s]/g, '').trim();"," const normalizedA = normalize(a);"," const normalizedB = normalize(b);"," // If either side is empty or whitespace-only, treat as no similarity for filtering purposes."," if (!normalizedA || !normalizedB) {"," return 0;"," }"," const wordsA = new Set(normalizedA.split(/\\s+/).filter(Boolean));"," const wordsB = new Set(normalizedB.split(/\\s+/).filter(Boolean));"," const intersection = new Set([...wordsA].filter((w) => wordsB.has(w)));"," const union = new Set([...wordsA, ...wordsB]);"," return intersection.size / union.size;"," * Formats a \"Source\" section with references to the original PR and issue."," * @param {Object} options"," * @param {number} [options.prNumber] - Original PR number"," * @param {string} [options.prUrl] - URL to the PR"," * @param {number[]} [options.issueNumbers] - Parent issue numbers"," * @param {string} [options.verdict] - Verifier verdict (pass/fail)"," * @param {string} [options.runUrl] - URL to the verifier workflow run"," * @returns {string} Formatted source section","function formatSourceSection({ prNumber, prUrl, issueNumbers, verdict, runUrl }) {"," const lines = ['## Source', ''];"," if (prNumber) {"," const prLink = prUrl ? `[#${prNumber}](${prUrl})` : `#${prNumber}`;"," lines.push(`- Original PR: ${prLink}`);"," if (Array.isArray(issueNumbers) && issueNumbers.length > 0) {"," const issueLinks = issueNumbers.map((n) => `#${n}`).join(', ');"," lines.push(`- Parent issue${issueNumbers.length > 1 ? 's' : ''}: ${issueLinks}`);"," if (verdict) {"," lines.push(`- Verifier verdict: ${verdict.toUpperCase()}`);"," if (runUrl) {"," lines.push(`- Verifier run: [workflow run](${runUrl})`);"," return lines.join('\\n');"," * Parse verifier output to extract unmet acceptance criteria and task gaps."," * "," * Supports two formats:"," * 1. Structured \"Criteria Status\" section with checkboxes"," * 2. Legacy format with \"blocking gaps\" bullet points"," * @param {string} verifierOutput - Raw output from the verifier (codex-output.md)"," * @returns {Object} Parsed findings","function parseVerifierFindings(verifierOutput) {"," const output = String(verifierOutput || '');"," const findings = {"," verdict: 'unknown',"," unmetCriteria: [],"," verifiedCriteria: [],"," gaps: [],"," summary: '',"," };"," // Extract verdict"," const verdictMatch = output.match(/verdict:\\s*(pass|fail)/i);"," if (verdictMatch) {"," findings.verdict = verdictMatch[1].toLowerCase();"," // Parse structured \"Criteria Status\" section if present"," // Look for checkboxes with status indicators like \"- [ ] criterion - NOT MET\" or \"- [x] criterion - VERIFIED\""," const lines = output.split('\\n');"," let inCriteriaSection = false;"," for (const line of lines) {"," const trimmed = line.trim();"," // Detect \"Criteria Status\" section header"," if (/^#+\\s*criteria\\s*status/i.test(trimmed) || /^\\*\\*criteria\\s*status\\*\\*/i.test(trimmed)) {"," inCriteriaSection = true;"," continue;"," }"," // End section on next heading"," if (inCriteriaSection && /^#+\\s/.test(trimmed) && !/criteria\\s*status/i.test(trimmed)) {"," inCriteriaSection = false;"," // Parse criterion lines in the criteria section"," if (inCriteriaSection) {"," // Match \"- [ ] criterion text - NOT MET (reason)\" or \"- [x] criterion text - VERIFIED (evidence)\""," const unmetMatch = trimmed.match(/^[-*]\\s+\\[\\s\\]\\s+(.+?)\\s*-\\s*NOT\\s*MET/i);"," const verifiedMatch = trimmed.match(/^[-*]\\s+\\[[xX]\\]\\s+(.+?)\\s*-\\s*VERIFIED/i);"," "," if (unmetMatch) {"," findings.unmetCriteria.push(unmetMatch[1].trim());"," } else if (verifiedMatch) {"," findings.verifiedCriteria.push(verifiedMatch[1].trim());"," }"," // Fall back to legacy gap detection if no structured criteria found"," if (findings.unmetCriteria.length === 0) {"," let inGapsSection = false;"," for (const line of lines) {"," const trimmed = line.trim();"," // Detect sections that indicate gaps"," if (/^(blocking|gap|missing|fail|unmet)/i.test(trimmed)) {"," inGapsSection = true;"," continue;"," // Capture bullet points describing issues"," if (inGapsSection && /^[-*•]/.test(trimmed)) {"," const content = trimmed.replace(/^[-*•]\\s*/, '').trim();"," if (content) {"," findings.gaps.push(content);"," }"," // Reset section tracking on blank lines or new headings"," if (!trimmed || /^#/.test(trimmed)) {"," inGapsSection = false;"," // Build summary from the first paragraph after verdict"," const afterVerdict = output.split(/verdict:\\s*(pass|fail)/i)[2] || '';"," const summaryLines = [];"," for (const line of afterVerdict.split('\\n')) {"," if (!trimmed) {"," if (summaryLines.length > 0) break;"," if (/^[-*•#]/.test(trimmed)) break;"," summaryLines.push(trimmed);"," findings.summary = summaryLines.join(' ').trim();"," return findings;"," * Extract unchecked items from a checkbox section."," * Filters out generic noise such as placeholder content, section headers, and"," * reference links so it can be reused for any checkbox-based content"," * (e.g., criteria, tasks, or other checklist items)."," * @param {string} content - Section content with checkboxes"," * @returns {string[]} Array of unchecked item texts","function extractUncheckedItems(content) {"," const items = [];"," const lines = String(content || '').split('\\n');"," // Match unchecked boxes: - [ ] or * [ ]"," const match = line.match(/^\\s*[-*]\\s+\\[\\s\\]\\s+(.+)$/);"," if (match) {"," const text = match[1].trim();"," // Skip placeholder content (e.g., \"Tasks section missing from source issue.\")"," if (isPlaceholderContent(text)) {"," // Skip markdown section headers (e.g., \"## Related\")"," if (looksLikeSectionHeader(text)) {"," // Skip PR/Issue reference links (e.g., \"- PR #123 - Title\")"," if (looksLikeReferenceLink(text)) {"," items.push(text);"," return items;"," * Extract checked items from a checkbox section."," * @returns {string[]} Array of checked item texts","function extractCheckedItems(content) {"," // Match checked boxes: - [x] or - [X] or * [x]"," const match = line.match(/^\\s*[-*]\\s+\\[[xX]\\]\\s+(.+)$/);"," items.push(match[1].trim());"," * Build a checklist from items, all unchecked."," * @param {string[]} items - List of task/criteria descriptions"," * @returns {string} Formatted checklist","function buildChecklist(items) {"," if (!Array.isArray(items) || items.length === 0) {"," return '';"," return items.map((item) => `- [ ] ${item}`).join('\\n');"," * Format a follow-up issue body based on verifier failure."," * This function:"," * 1. Copies unmet acceptance criteria from the original issue/PR"," * 2. Generates new tasks based on verifier findings"," * 3. Preserves context (Why, Scope, Non-Goals) from the original"," * 4. Adds implementation notes with verifier details"," * @param {string} options.verifierOutput - Raw verifier output"," * @param {string} [options.prBody] - Original PR body"," * @param {Object[]} [options.issues] - Array of linked issues with {number, title, body}"," * @param {number} [options.prNumber] - PR number"," * @param {string} [options.prUrl] - PR URL"," * @param {string} [options.runUrl] - Verifier workflow run URL"," * @returns {Object} { title: string, body: string }","function formatFollowUpIssue({"," verifierOutput,"," prBody,"," issues = [],"," prNumber,"," prUrl,"," runUrl,","}) {"," const findings = parseVerifierFindings(verifierOutput);"," const issueNumbers = issues.map((i) => i.number).filter(Boolean);"," // Parse sections from PR and all linked issues"," const prSections = parseScopeTasksAcceptanceSections(prBody || '');"," const issueSectionsList = issues.map((issue) =>"," parseScopeTasksAcceptanceSections(issue.body || '')"," );"," // Merge sections, preferring the first non-empty value found"," const merged = {"," scope: '',"," tasks: '',"," acceptance: '',"," // Check PR first, then issues in order"," const allSources = [prSections, ...issueSectionsList];"," for (const source of allSources) {"," if (!merged.scope && source.scope) merged.scope = source.scope;"," if (!merged.tasks && source.tasks) merged.tasks = source.tasks;"," if (!merged.acceptance && source.acceptance) merged.acceptance = source.acceptance;"," // Extract Why/Goals section (look for common patterns)"," let why = '';"," for (const issue of issues) {"," const body = issue.body || '';"," // Look for ## Why, ## Goals, ## Summary sections"," const whyMatch = body.match(/##\\s*(?:Why|Goals?|Summary|Motivation)\\s*\\n([\\s\\S]*?)(?=\\n##|\\n---|\\n\\n\\n|$)/i);"," if (whyMatch) {"," why = whyMatch[1].trim();"," break;"," // Also check PR body"," if (!why && prBody) {"," const whyMatch = prBody.match(/##\\s*(?:Why|Goals?|Summary|Motivation)\\s*\\n([\\s\\S]*?)(?=\\n##|\\n---|\\n\\n\\n|$)/i);"," // Extract Non-Goals section"," let nonGoals = '';"," const ngMatch = body.match(/##\\s*(?:Non-Goals?|Out of Scope|Constraints)\\s*\\n([\\s\\S]*?)(?=\\n##|\\n---|\\n\\n\\n|$)/i);"," if (ngMatch) {"," nonGoals = ngMatch[1].trim();"," if (!nonGoals && prBody) {"," const ngMatch = prBody.match(/##\\s*(?:Non-Goals?|Out of Scope|Constraints)\\s*\\n([\\s\\S]*?)(?=\\n##|\\n---|\\n\\n\\n|$)/i);"," // Determine unmet acceptance criteria"," // Priority: 1) Verifier's explicit unmet criteria, 2) Cross-reference with verified, 3) Fall back to unchecked items"," const uncheckedAcceptance = extractUncheckedItems(merged.acceptance);"," const completedTasks = extractCheckedItems(merged.tasks);"," const incompleteTasks = extractUncheckedItems(merged.tasks);"," // Use verifier's findings to refine the unmet criteria list"," let refinedUnmetCriteria = [];"," "," if (findings.unmetCriteria.length > 0) {"," // Best case: Verifier explicitly identified which criteria weren't met"," refinedUnmetCriteria = findings.unmetCriteria;"," } else if (findings.verifiedCriteria.length > 0) {"," // Verifier confirmed some criteria - filter out verified ones from unchecked list"," const verifiedLower = findings.verifiedCriteria.map(c => c.toLowerCase().trim());"," refinedUnmetCriteria = uncheckedAcceptance.filter(criterion => {"," const criterionLower = criterion.toLowerCase().trim();"," // Keep criterion if it wasn't verified (fuzzy match to handle minor text differences)"," return !verifiedLower.some(verified => "," verified.includes(criterionLower) || criterionLower.includes(verified) ||"," similarityScore(verified, criterionLower) > 0.9"," );"," });"," } else {"," // Fall back to all unchecked items from the original issue"," refinedUnmetCriteria = uncheckedAcceptance;"," // Build new task list based on scenario:"," // 1. If there are incomplete tasks, copy them"," // 2. If all tasks are complete but acceptance criteria aren't met,"," // generate new tasks from the gaps"," let newTasks = [];"," if (incompleteTasks.length > 0) {"," // Scenario 1: Copy incomplete tasks"," newTasks = incompleteTasks;"," } else if (completedTasks.length > 0 && refinedUnmetCriteria.length > 0) {"," // Scenario 2: All tasks done but criteria not met - need new tasks"," // Generate tasks from verifier findings or acceptance criteria"," if (findings.gaps.length > 0) {"," newTasks = findings.gaps.map((gap) => `Address: ${gap}`);"," } else if (findings.unmetCriteria.length > 0) {"," // Use verifier's specific unmet criteria (no prefix - it's clear these need work)"," newTasks = findings.unmetCriteria;"," } else {"," // Fall back to creating tasks from unmet acceptance criteria"," newTasks = refinedUnmetCriteria;"," // Build implementation notes"," const notesLines = [];"," if (findings.summary) {"," notesLines.push(findings.summary);"," if (findings.verifiedCriteria.length > 0) {"," notesLines.push('');"," notesLines.push('Verifier confirmed these criteria were met:');"," for (const criterion of findings.verifiedCriteria) {"," notesLines.push(`- ✓ ${criterion}`);"," if (findings.gaps.length > 0 && incompleteTasks.length === 0) {"," notesLines.push('Verifier identified the following gaps:');"," for (const gap of findings.gaps) {"," notesLines.push(`- ${gap}`);"," notesLines.push(`Original implementation in PR #${prNumber}.`);"," // Assemble the issue body"," const sections = [];"," // Source section"," sections.push(formatSourceSection({"," prNumber,"," prUrl,"," issueNumbers,"," verdict: findings.verdict,"," runUrl,"," }));"," // Why section (if available)"," if (why) {"," sections.push(['## Why', '', ``, why].join('\\n'));"," // Scope section"," if (merged.scope) {"," sections.push(['## Scope', '', ``, `Address unmet acceptance criteria from PR #${prNumber || 'N/A'}.`, '', 'Original scope:', merged.scope].join('\\n'));"," sections.push(['## Scope', '', `Address unmet acceptance criteria from PR #${prNumber || 'N/A'}.`].join('\\n'));"," // Non-Goals section (if available)"," if (nonGoals) {"," sections.push(['## Non-Goals', '', ``, nonGoals].join('\\n'));"," // Tasks section"," if (newTasks.length > 0) {"," const taskHeader = incompleteTasks.length > 0"," ? ''"," : '';"," sections.push(['## Tasks', '', taskHeader, buildChecklist(newTasks)].join('\\n'));"," sections.push(['## Tasks', '', '', '- [ ] Review verifier output and determine necessary tasks'].join('\\n'));"," // Acceptance Criteria section - use refined list from verifier findings"," if (refinedUnmetCriteria.length > 0) {"," const criteriaComment = findings.unmetCriteria.length > 0 || findings.verifiedCriteria.length > 0"," ? ''"," : '';"," sections.push(['## Acceptance Criteria', '', criteriaComment, buildChecklist(refinedUnmetCriteria)].join('\\n'));"," sections.push(['## Acceptance Criteria', '', '', '- [ ] All original acceptance criteria satisfied'].join('\\n'));"," // Implementation Notes section"," if (notesLines.length > 0) {"," sections.push(['## Implementation Notes', '', notesLines.join('\\n')].join('\\n'));"," // Build title"," const title = prNumber"," ? `[Follow-up] Unmet criteria from PR #${prNumber}`"," : '[Follow-up] Verifier failure - unmet acceptance criteria';"," // Determine if this issue has substantive content worth creating"," // Skip if we have no real tasks/criteria (just defaults) and no verifier gaps"," const hasSubstantiveContent ="," (newTasks.length > 0 && !newTasks.every(t => isPlaceholderContent(t))) ||"," (refinedUnmetCriteria.length > 0 && !refinedUnmetCriteria.every(c => isPlaceholderContent(c))) ||"," findings.gaps.length > 0 ||"," findings.unmetCriteria.length > 0;"," return {"," title,"," body: sections.join('\\n\\n'),"," findings,"," unmetCriteria: refinedUnmetCriteria,"," newTasks,"," hasSubstantiveContent,"," * Generate a simple follow-up issue when detailed parsing isn't needed."," * Used as a fallback when the source PR/issues don't have parseable sections."," * @param {number[]} [options.issueNumbers] - Linked issue numbers","function formatSimpleFollowUpIssue({"," issueNumbers = [],"," const lines = [];"," lines.push(formatSourceSection({"," lines.push('');"," lines.push('## Verifier Output');"," lines.push('```');"," lines.push(verifierOutput.trim());"," lines.push('## Tasks');"," lines.push('- [ ] Review verifier output above');"," lines.push('- [ ] Address identified gaps');"," lines.push('- [ ] Re-run verifier after fixes');"," lines.push('## Acceptance Criteria');"," lines.push('- [ ] Verifier passes on the follow-up PR');"," ? `Verifier failure for PR #${prNumber}`"," : 'Verifier failure on merged commit';"," // Simple format always has substantive content (verifier output)"," // since we only use it when we have actual verifier output to display"," const hasSubstantiveContent = "," findings.gaps.length > 0 || "," findings.unmetCriteria.length > 0 ||"," (verifierOutput && verifierOutput.trim().length > 0);"," body: lines.join('\\n'),","module.exports = {"," formatFollowUpIssue,"," formatSimpleFollowUpIssue,"," formatSourceSection,"," parseVerifierFindings,"," extractUncheckedItems,"," extractCheckedItems,"," buildChecklist,"," // Helper functions exported for testing"," isPlaceholderContent,"," looksLikeSectionHeader,"," looksLikeReferenceLink,","};","message",[749,750,751,752,753,754],{"_755":57,"_57":767},{"_755":761,"_343":344,"_350":765,"_351":766},{"_755":57,"_57":764},{"_755":761,"_343":344,"_350":762,"_351":763},{"_755":57,"_57":760},{"_755":756,"_757":758,"_350":326,"_351":759},"content_type","terminal_chunk_citation","terminal_chunk_id","dca008",94,"\n\n**Testing**\n* ✅ `node .github/scripts/__tests__/verifier-issue-formatter.test.js` ","repo_file_citation",217,221,"\n* Retained the base-branch documentation improvements for checkbox filtering to clarify reuse across different checklist content. ",7,21,"**Summary**\n* Resolved merge conflict in `verifier_issue_formatter.js`, preserving the more flexible placeholder detection regex (case-insensitive, optional spacing, and uppercase support). ","pr","pr_title","Resolve merge conflicts in verifier issue formatter","pr_message","## Summary\n- merge main into the work branch and resolve conflicts in `verifier_issue_formatter.js`\n- preserve the stricter placeholder detection regex while keeping base branch documentation around checkbox filtering\n\n## Testing\n- node .github/scripts/__tests__/verifier-issue-formatter.test.js","output_diff",{"_104":773,"_776":777,"_139":140,"_778":-5,"_316":779,"_780":781,"_782":326,"_783":784,"_785":326,"_786":787,"_788":-5},"pre_apply_patch","repo_id","/workspace/Workflows","preapply_patch_base_commit_sha","diff --git a/.github/scripts/verifier_issue_formatter.js b/.github/scripts/verifier_issue_formatter.js\nindex 5e48440bfdacbe176a37a3a18c7aa16a9583c770..5d045083e558ce193fbdcda1c6ef2ebc527585e0 100644\n--- a/.github/scripts/verifier_issue_formatter.js\n+++ b/.github/scripts/verifier_issue_formatter.js\n@@ -194,51 +194,53 @@ function parseVerifierFindings(verifierOutput) {\n if (!trimmed || /^#/.test(trimmed)) {\n inGapsSection = false;\n }\n }\n }\n \n // Build summary from the first paragraph after verdict\n const afterVerdict = output.split(/verdict:\\s*(pass|fail)/i)[2] || '';\n const summaryLines = [];\n for (const line of afterVerdict.split('\\n')) {\n const trimmed = line.trim();\n if (!trimmed) {\n if (summaryLines.length > 0) break;\n continue;\n }\n if (/^[-*•#]/.test(trimmed)) break;\n summaryLines.push(trimmed);\n }\n findings.summary = summaryLines.join(' ').trim();\n \n return findings;\n }\n \n /**\n * Extract unchecked items from a checkbox section.\n- * Filters out placeholder content, section headers, and reference links.\n+ * Filters out generic noise such as placeholder content, section headers, and\n+ * reference links so it can be reused for any checkbox-based content\n+ * (e.g., criteria, tasks, or other checklist items).\n *\n * @param {string} content - Section content with checkboxes\n * @returns {string[]} Array of unchecked item texts\n */\n function extractUncheckedItems(content) {\n const items = [];\n const lines = String(content || '').split('\\n');\n \n for (const line of lines) {\n // Match unchecked boxes: - [ ] or * [ ]\n const match = line.match(/^\\s*[-*]\\s+\\[\\s\\]\\s+(.+)$/);\n if (match) {\n const text = match[1].trim();\n \n // Skip placeholder content (e.g., \"Tasks section missing from source issue.\")\n if (isPlaceholderContent(text)) {\n continue;\n }\n \n // Skip markdown section headers (e.g., \"## Related\")\n if (looksLikeSectionHeader(text)) {\n continue;\n }\n \n // Skip PR/Issue reference links (e.g., \"- PR #123 - Title\")\n","external_storage_diff",{"_789":790,"_791":-5},"files_modified","lines_added",3,"lines_removed","commit_message","Merge branch 'main' of https://github.com/stranske/Workflows into work\n\n# Conflicts:\n#\t.github/scripts/verifier_issue_formatter.js","additional_parent_commit_shas","file_id","file_00000000c8b471f7882d0820db11d38d","ttl",{"_104":317,"_53":96,"_108":317,"_794":795,"_796":797,"_798":799,"_143":-5,"_130":800},[95],"input_items",[820,821],"external_post_config",{"_801":802,"_249":180,"_803":294,"_260":-5,"_776":243,"_804":18,"_805":-5,"_806":-5,"_807":808,"_809":810,"_811":-5,"_812":-5,"_813":814,"_815":18,"_816":70,"_817":65,"_818":18,"_819":-5},"user_model_slug","slug",1767109864.47096,"installation_id",71148695,"pr_number","enable_internal_github_app_routing","gitlab_service_account_project_id","review_trigger","comment_id",3699769079,"comment_type","issue","pr_write_guard_token","pending_pr_reaction_id","pending_comment_reaction_id",321433241,"comment_if_no_findings","comment_on_error","share_url","is_parallel_review","review_summary_id",{"_104":747,"_108":317,"_353":828},{"_301":822,"_303":823,"_824":825,"_826":140,"_313":-5,"_104":827},"[WIP] WIP address feedback on preventing contentless follow-up issues","## Plan for Adding Unit Tests\n\n- [x] Add unit tests for `isPlaceholderContent()` helper function\n - [x] Test placeholder patterns (e.g., \"Scope section missing from source issue.\")\n - [x] Test \"N/A\" variations\n - [x] Test empty strings\n - [x] Test non-placeholder content\n- [x] Add unit tests for `looksLikeSectionHeader()` helper function\n - [x] Test markdown headers (##, ###, etc.)\n - [x] Test non-header content\n- [x] Add unit tests for `looksLikeReferenceLink()` helper function\n - [x] Test PR references (e.g., \"PR #123 - Title\")\n - [x] Test Issue references (e.g., \"Issue #456 - Description\")\n - [x] Test with and without leading dashes\n - [x] Test non-reference content\n- [x] Import the new helper functions in the test file\n- [x] Run tests to verify all pass (444/444 tests passing)\n- [x] Reply to the review comment with commit hash\n\n\n---\n\n💡 You can make Copilot smarter by setting up custom instructions, customizing its development environment and configuring Model Context Protocol (MCP) servers. Learn more [Copilot coding agent tips](https://gh.io/copilot-coding-agent-tips) in the docs.","base_ref","37d20226dd8afa5652670e8785626f662bc3b667","head_ref","pull_request_info",[829],{"_755":57,"_57":830},"@codex resolve 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