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\"$(brew --prefix ccache)/libexec:$PATH\" }\n 86\t# # Alternative static configuration for macOS:\n 87\t# environment = { CMAKE_PREFIX_PATH = \"/opt/homebrew/opt/openblas\", PATH = \"/opt/homebrew/opt/ccache/libexec:$PATH\" }\n 1\t# - Find python libraries\n 2\t# This module finds the libraries corresponding to the Python interpreter\n 3\t# FindPythonInterp provides.\n 4\t# This code sets the following variables:\n 5\t#\n","command","/bin/bash -lc \"nl -ba pyproject.toml | sed -n '1,20p'; nl -ba pyproject.toml | sed -n '70,95p'; nl -ba cmake/Modules/FindPythonLibsNew.cmake | sed -n '1,5p'\"","commandActions",[414,415],"cwd","/workspace/Cytnx","durationMs","exitCode","processId","57762","source","agent","commandExecution",{"_401":420,"_166":421,"_155":421,"_90":419},{"_401":416,"_166":417,"_155":418,"_90":419},"nl -ba cmake/Modules/FindPythonLibsNew.cmake","FindPythonLibsNew.cmake","cmake/Modules/FindPythonLibsNew.cmake","read","nl -ba 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'1,5p'\"}","exec_command","namespace","function_call",{"_361":430,"_348":349,"_363":351},{"_364":-5,"_380":431,"_41":-5,"_382":432,"_90":384},"gAAAAABp8XQQ38I3afFFpfbp19rV_VPNu2AMM0RQ8QqIS9m4EaYjmluc5wz9Du3IyDo3wx0YIb0KCVABND7r6ADWXZ2JKDuYri1PSA2UFHnwn8LSnMXZbebGD4-H5akmOHx7n6H10XVlgD8nleFTw2xNN0AZA0y0fb-u33fncu5DlYNS8YyxbC28MeCo9JsNFVuIQ7Fg3F-qYvKGpNDHzztWGiPluTqrH5BqtMjX-H6ogiuY11C-QJBU-HvXdZjlP2yMn3Ys6FXqyHw-TLwXyJByKRN-TCIkqsPMkG5zFoLPjFC6n3wQTRmVh5deF58_Or9npSc027RRT0mWy85Q751sEBTZWt0uA3ZRwPiBkZP5Vomv6J81D2SwNASyCSKRqQ1U8-2EfohlVzixHxMbHj8dUCRYn9QNNBx8gPENBURfx_oiXrNuf3h25QyZxL7g6tphUwBebaWBlpRzKxIkICi3PnjQJFb1CfbbkNvvpZP0znqMFXEkBQ22jvIzveZfVJyIkdocCPvsJAErcoPcVnOi7v9niPSiEGWzPrpFR6x8QiMvhvkrR9YEd9Fw1fO2yKIr4Ih5A2Iz1nxEpufBSfbX9qIDJDF0sMnKZmgn9U-FntF7miJ9EZ-SfKH6WAArz8Iz1hzffyPJdwnezwPWCBxYY9nJ4Z5EZvd3a2zELVWpJD2jEI8yMjTYhfQWYPBLK7-QDH-Jd-7sQTQqiOVFPbvL88uk1urr9uWYlqgps2J10TeXE_k_B4k7boDZDCSMSZ35yR3S2HnW4Qohbus_rgwNfZlBleZBxwXkt62VpiHNhHBfWXteOXpkK_OQ9XLyyRbtUYTSEKtoPjrCiH1v_eVos6lraVDtL37-8NcU8Is_G_CloQROToYhrK74gS6sdWyo4TdkUAi61mV2hK5q59iQqEtDVtZs3wVuQpx6ut8DxB9Vy2AyMTMr_B7-Ui_t9YfKZ3EHE4rVAmx5sDDVuYGSGt6DrQzj0Vx_HuLRmEXrvrigR1JL0DcVqxGvghiSqHpF1i3bcLQEk27ftxD-Wya2EmvBuFXsiU8m9CwsgZeShQVR3Ii90Tix4GIuyBNemFPzZ2234gneSJwtPdIKI2u48gkyYepcPTgWmRGvsH4e6YQVLYPs746MWt-wiHNpZlFijfZeljhScxwqJG0xaW7jW-japS4X17Abpdk8YNDVqPQcssa8SvUGwhx_FRD84nGBfMNTVsN_RstqSvlsJfnaXVSRFz2SsJEz1H4Agebs_IvQaDoRwAwAtBM467tCbdGOGBky-gjqZOTMe0r47DtG8ayODj7uzLFo00YI-_T3KgBMvdA86Mg5oubr6pAu32JD1NQJCwYvIAyRT-qdjDbdFfuZYCLn-OBDdLb5BMKhZFRVdl97Fv0xlp6CeNLnFNJjVyk7gZbIkOE2cvNKBLa9uLbgNJExu3k8OSDEn2hI84xwG069SvUKnnanamsfFS_2nZlwZVvFfX5_XPCp7-_IOLWi_WpnYWdZ0nITUJiBtUnBYOgW3_s=",[],{"_361":434,"_348":349,"_363":351},{"_364":435,"_41":436,"_382":437,"_90":384},[],"rs_056e1704083dbc600169f1740cad68819798ee20a35ec5d7e6",[],{"_361":439,"_348":349,"_363":351},{"_392":440,"_394":441,"_90":396},"call_SWYuBNkGGB58w9SwbajKYcrf","Chunk ID: 73f875\nWall time: 0.0000 seconds\nProcess exited with code 1\nOriginal token count: 2\nOutput:\nmissing\n",{"_361":443,"_348":349,"_363":351},{"_399":444,"_401":445,"_403":446,"_405":406,"_407":31,"_408":447,"_41":440,"_409":448,"_411":412,"_354":449,"_90":413},"missing\n","/bin/bash -lc \"git status --short; test -f cmake/Modules/FindPythonLibsNew.cmake.bak && echo exists || echo missing; rg -n 'setuptools' pyproject.toml\"",[450],1,"18026","failed",{"_401":451,"_90":452},"git status --short; test -f cmake/Modules/FindPythonLibsNew.cmake.bak && echo exists || echo missing; rg -n 'setuptools' pyproject.toml","unknown",{"_361":454,"_348":349,"_363":351},{"_424":455,"_392":440,"_41":-5,"_166":426,"_427":-5,"_90":428},"{\"cmd\":\"git status --short; test -f cmake/Modules/FindPythonLibsNew.cmake.bak && echo exists || echo missing; rg -n 'setuptools' pyproject.toml\"}",{"_361":457,"_348":349,"_363":351},{"_364":-5,"_380":458,"_41":-5,"_382":459,"_90":384},"gAAAAABp8XQL6FuHlbk1lTy9hnCCRMT77APf6n6xQSnA_vMVRBm-0OPFm0S1_gy2nspECiUg5GzCa2okbW0fIvwbw6LFlJQ9zpKDBp8KAwWb1Ylbp1alJgEUhUH5DxleYvB_ssDoICctDdgdoXs3nyB7HLm2-yVn3JsCaYAhkZ-B0s4NIE17ni-dSq4Fq0LzTtcdsi9rhbmrlft051xngHHeMkt8BHVsVECUxeGzdhoVmKgve6g33XqFhNnGy_q800WCwNSGQQuJ3aoGOXCJj52gxSfXupEUZhAg1Li0fg23PqASs3Pz1ZTxVD8I1nzotV6czJf0yWrEvG-OYx6H0BJYCALdcdJ43P78tHOW8SsjIvInb0MhbK2AdwXFS_3Li5M9r0TttTZXyA06naqRCkJYmUkCwRktLSSW6qOK_84Z4931csKvhL6Lnd6swxQ2gstOeuN7Muv8C0s7MQyt4PUumAV5eqfKmAqMrWpgsQECMuAQiGtz2C7xIhhrqQdLwDOKo6Ju2VJVsEmtDB3NfTAGJrAWd2jyuDAX_sdoyQmzzmX1jsHJ5h15_A1282lYQ4kHyFspKeFweRqQAUHeiERCEe4EvzwniKHwnNQS3Vprb9iApUtHnGSQAO_wCZHci4aGT1yJMd05pl0omSzYnECtO-HWOT5JfrM6V4UoxuQMszKk7zcu_3aETsR3iP7PjJCV5Bnq6gndgAQyqAJv9G5HlPchbY0KBzKc6aTTRwSjaKO-vmKOV5FjCyeHGlKneKX_HoOCa_6Kg8TQu0ldDtQqNYtHhOeb4yF_KvT_7ucm3F3vzReo_02Cfc0VA-fIZVowCIaiLzNkSqQKshIwS2i7Zz4fVsfJkSFfQwsQTqW6740ABDOyedgyxDC7_CTuZQWRQK0lxycZVPDUJkYQlGCQnpof6Jk4B5F74EcyvB9zfdftNLwRIfNfKcucry1fmuPp3REYrmd3LbERPfCMp1YYkc4267g54g==",[],{"_361":461,"_348":349,"_363":351},{"_364":462,"_41":463,"_382":464,"_90":384},[],"rs_056e1704083dbc600169f1740b50708197baae87573817265d",[],{"_361":466,"_348":349,"_363":351},{"_467":468,"_41":-5,"_354":111,"_90":469},"action",{"_470":471,"_472":473,"_90":474},"web_search_call","queries",[473],"query","GitHub pull request remove setuptools build-system pyproject.toml distutils compatibility","search",{"_361":476,"_348":349,"_363":351},{"_467":477,"_41":478,"_472":473,"_90":479},{"_470":480,"_472":473,"_90":474},"ws_056e1704083dbc600169f1740110d88197a2c04775ce37cb25","webSearch",[473],{"_361":482,"_348":349,"_363":351},{"_364":-5,"_380":483,"_41":-5,"_382":484,"_90":384},"gAAAAABp8XQBLH3tAmhkvUXkzfa05v8t1PnPcM6Ztv6uPoPz3rqT1iIZl0bY4RbfzfXZvCIGeVzglfxzb4wW8onov2UxeT9Jssd3D5s14_LyriM6MuJow_QGp93IaTg2qla0t2SAnUx8IQEpF2RfILsYOeHntyfDV-kI0CBa0GuAo0c_Wdpfosiu4nUEqYAH6fSHVUOVg06Yk68EleWTKW9UWBwMMULV0KGvVaCC7r8I0OZz6UTySKllQDKdp40lRo6_H7y2XEybBeQwTYR33d7B4TvXa9Ti_TK1pa_gyd5x8-_v6HLbfDQKWUCpPFQeZuGr-QgfxeoQLeBWTU1WNovwgdxmtqJWp3q-42WfY15Vt9JnBNq1vrOVkj2s6dy-mxoxa8yKDsvtmz1MJwhYqoe3jO-CX5hLGHxXtcgqWIxSgJvkm6BZ0VWsVhaMm4bMgc_0CgE-lwpRyA_uRM6Es2S2XQpVytAWRL45BMN9T4XoX2JfhAWIr_3hEnCH9ryK8F1e71gmsx6P-XemY71T4ZpSfw-VshqUQq0XriikTi9OGfiMPuCuMCiamrSyNF6lHsSPtvQ8HyBNMfbtuyw5zduqB1oD2LhaG-D636_EyB7pm7w2oI8gE-K-xZLOVREUFKn7S7Z7jb-2NY7AsPq28lzZgBrZg0gUyrxmlIxLoE42ZsIp8fo4WfSHNw37VRHdaM3dNWFvun3ByGX-wb1LKmAqmULbHvfIcJgJb0hV3FrhOKd-GaOSeBaLgLsyXAxIEplrdGYVXgnRqqt-jxMGalMPDBN7SSLt1Ib5DY1WdOhzHp8CjiNxxL492nw5NL34KTlSkR7FzaPbnJWQF9QTQ0r3HaEDMDvaph1ZzK8mqLRW9Oqv4lrQEnh-nN1kwkI_lrzSaRikeYCdIAvfBDKycVG_HdAO4YiyTg1jix2-vKSeYw6Hp_RNYSIJjD5dlabGKR5YzDRRJb25hE2Sk2t3Z9Yg0SQ42QY0oaWblqW_NgrkTPX5U5rNvvKLiRqv-ApI75XdUXAzGS6K9WlCUpB6sOR3izqMj53ZD4V0PH3yDjL2kj5TcwLsXO_iTgeSWcjH1DQpWYasM_qYLe7ldieRSkK2DO5EsrHXIqZKORcQ6PPMmtGYtRoqiX24WwsoEBPt5aUiBAh1W6fgNeCgTV2yxSPN0fDjfUO197fL8nc8PnyP-bk7ESK5yz-0ZU26yUOt1b8-mgLPY_YSDmh5z5ZTnkvKwmPfLFI1n7kSVczmZQ70LWIjq3mbuU4=",[485],{"_45":486,"_90":487},"**Searching for setuptools info**\n\nI need to remember the requirement to always search the web if there’s a chance that it's relevant. But I wonder if a quick search could end up being irrelevant. Sometimes it feels like I’m searching for nothing! Although, it might be good to do a quick query about setuptools and distutils, but I should consider if that’s actually necessary. I'll go ahead and do one quick search just to be safe!","summary_text",{"_361":489,"_348":349,"_363":351},{"_364":490,"_41":491,"_382":492,"_90":384},[],"rs_056e1704083dbc600169f173fe1ca4819794c0f40faf29098d",[486],{"_361":494,"_348":349,"_363":351},{"_392":495,"_394":496,"_90":396},"call_ivpEwDYRYMoaI8Ic6QtyiFtR","Chunk ID: 2715f4\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 10\nOutput:\ncmake/Modules/FindPythonLibsNew.cmake\n",{"_361":498,"_348":349,"_363":351},{"_399":499,"_401":500,"_403":501,"_405":406,"_407":31,"_408":31,"_41":495,"_409":502,"_411":412,"_354":111,"_90":413},"cmake/Modules/FindPythonLibsNew.cmake\n","/bin/bash -lc \"rg --files cmake/Modules | rg 'FindPythonLibsNew' ; git status --short\"",[503],"18597",{"_401":504,"_90":452},"rg --files cmake/Modules | rg 'FindPythonLibsNew' ; git status --short",{"_361":506,"_348":349,"_363":351},{"_424":507,"_392":495,"_41":-5,"_166":426,"_427":-5,"_90":428},"{\"cmd\":\"rg --files cmake/Modules | rg 'FindPythonLibsNew' ; git status --short\"}",{"_361":509,"_348":349,"_363":351},{"_364":-5,"_380":510,"_41":-5,"_382":511,"_90":384},"gAAAAABp8XP9iYfdvHcKQnGECeanWaEOIXETtEJkWS7IsowW9tGCFDKPekZmUMYv9SMIuBykmp8HyvgYYJEWAj2moDeoTlLD-oM4vu8OM_qjxcHscmX8wy-tMqYPwmzSWi_Mta-KBeolu1obeK56nV2IEpTZae2nwyxzhAkRRP-zMUrwgk4FIhjbWj38orW2FCoZ4Syteq2tvXbKWguz-DJF52HN_ZA0wLY4QkntYYLroT7hT84N0ryZvtmhjzfMPQGVElGdBclYP-LzxVowXzeSLr8l_8d58Xut1mBqTpNJmAcAXBei2-UmSLWt30qE604ghBIOgd6HxDaKcfryfAyGS8IxScqQ-7tAC14RvxrCvE3yYuedte1Usm4m69_Ny1ITOy_aR1cqP2KWl70ZVISqjYDhlyWkMXqRyVOeFNTllWFXYueOJ4A4O5KOJaZ4Ms1_00CJlgTaZ5BIpp0oM7Nhdq8LeLjEdGsa6dzVtAnwuF7c72vOnf0nMwduTivAD2M7DJnqgoCd8RyqPqLSgq8_djPRPVKTH7I2HTTrhFK3IXkcf8DVdjoy5DcW6YYvjYGX02eEE4SpXH1KNj33ibPPLVK6Bw7wpMx0udDBt_nhhISsa-76Wqt0s45WUdhtYtwX8dFBMJXTxU1jiCpEvpBLR21SbJhaiwAMYN709ofwYR28ztbjnypNs9-qN30bn0A789DV3iVAjqkq42j2igqnAjRkBlqy-czxr25gi6z6MBCRLHhn32buhYPoZROvHdzBY1VuAh_I9hz_p1SBGbLUw5Ad00_a4A1fhsF4wV9nUMl0lTRLh6c2rXu4p37kQWfri9BzXDBCTSZQL3z7TTuUk1EPh5DiRTAmrY8ybFJcFA3kYI5d1hq5cW0X3FSjnUMABHmnDDop8bHZ5Jhv0zhpAgxBO1cTLpsX7xrmSb3SmPsB-yrxTMjeaUbyDZVnR4Pr6etAiPN5M0a_SUlSInyJHyDK9VKSCNuPUCWWYsyr3ctG0JZ4ru4hoc6jitWejvruSPgJrocNzGBMyQjRAWZ3o0WKTeee_6bpkEc_4asGW3DbsKep2OLIT3iGp_juZdjdqV8TcGCQezVbpBXTZ60rnriadUQY2PiNSomS-YBQZw53zc673GLTXl3NCgbUyVV6Nbleo7VCvXr4IiSYduYVTT1c5wtfQtIueCqtp57uJD6h8Hx2ymR7bOpDOffvdXAsldDiYtP9SXdcVAXajcg5gq0Gbi6ql2I-33vo-zON9e2H0BYteX1m4xKWkgdnWt41dsWtkfTSz-6PcyR9zbW-A1rkoFsrWvGZ8XPs7VOQ1cnPb2Nc2kFFpLRZqzd5RQjLa1r3U7nFMx-uRPqTd1Y2LqWOPGzbQQ==",[512],{"_45":513,"_90":487},"**Checking for issues with setuptools**\n\nI’m noticing that there aren’t any current setuptools. It’s possible that a .bak file is causing an exit error. I should trigger the removal of both setuptools and any .bak files. I think setuptools might have already been removed from the current branch, but I need to confirm if the .bak file exists. First, I’ll check the file listing using rg FindPythonLibsNew to clarify what’s there.",{"_361":515,"_348":349,"_363":351},{"_364":516,"_41":517,"_382":518,"_90":384},[],"rs_056e1704083dbc600169f173f93c8081979ab1ca59836eb1be",[513],{"_361":520,"_348":349,"_363":351},{"_392":521,"_394":522,"_90":396},"call_EVccer546saUSjEibYimR5kk","Chunk ID: 82928c\nWall time: 0.0000 seconds\nProcess exited with code 1\nOriginal token count: 912\nOutput:\n[build-system]\nrequires = [\"scikit-build-core >=0.11\", \"pybind11 >=3.0\"]\nbuild-backend = \"scikit_build_core.build\"\n\n[project]\ndynamic = [\"version\"]\nname = \"cytnx\"\nmaintainers = [\n { name = \"Kai-Hsin Wu\", email = \"kaihsinwu@gmail.com\" },\n { name = \"Chang-Teng Lin\" },\n { name = \"Hsu Ke\" },\n]\ndescription = \"A tensor network library\"\n\nreadme = \"Readme.md\"\nlicense = \"Apache-2.0\"\nlicense-files = [\"LICENSE\"]\nrequires-python = \">=3.9\"\nkeywords = [\"tensor\", \"network\", \"physics\"]\nclassifiers = [\n \"Development Status :: 5 - Production/Stable\",\n \"Topic :: Scientific/Engineering :: Physics\",\n \"Topic :: Scientific/Engineering :: Mathematics\",\n \"Operating System :: MacOS :: MacOS X\",\n \"Operating System :: POSIX :: Linux\",\n]\n\ndependencies = [\"numpy >=1.18\", \"graphviz\", \"beartype\"]\n\n[project.urls]\nDocumentation = \"https://cytnx-dev.github.io/Cytnx_doc\"\nRepository = \"https://github.com/Cytnx-dev/Cytnx.git\"\nIssues = \"https://github.com/Cytnx-dev/Cytnx/issues\"\n\n[tool.scikit-build]\nminimum-version = \"0.11\"\nwheel.packages = [\"cytnx\"]\ncmake.args = [\n # Use the default preset defined in CMakePresets.json\n \"--preset=openblas-cpu\",\n # TODO: Remove setting of generator to support builuding on Windows.\n # scikit-build uses Ninja as the default cmake generator. However, Ninja\n # conflicts against the build process of HPTT.\n \"-G Unix Makefiles\",\n]\n# Force the build directory to be \"build\" instead of a random temp folder. This helps\n# ccache caches the compiler outputs successfully.\nbuild-dir = \"build/{wheel_tag}\"\n# cp39-cp39-macosx_14_0_arm64\n\n[tool.scikit-build.metadata.version]\nprovider = \"scikit_build_core.metadata.regex\"\ninput = \"version.cmake\"\nregex = '''\nset\\(\\w+?VERSION_MAJOR\\s+(?P\\d+)\\)\nset\\(\\w+?VERSION_MINOR\\s+(?P\\d+)\\)\nset\\(\\w+?VERSION_PATCH\\s+(?P\\d+)\\)\n'''\nresult = \"{major}.{minor}.{patch}\"\n\n[tool.cibuildwheel]\n# The image used to build wheels for x86_64 on Linux is manylinux_2_28, which supports\n# older version of Linux than manylinux_2_34. However, manylinux_2_28 is AlmaLinux 8\n# based and AlmaLinux 8 ships Boost v1.66. The Boost's CMake configuration files are only\n# available since v1.70, so AlmaLinux 9 based manylinux_2_34 is picked here.\n# There is a caveat for manylinux_2_34. manylinux_2_34 assume the machines use x86-64-v2\n# architecture which is an extension of x86_64, so the wheels built with manylinux_2_34\n# may not support older machines. See https://github.com/pypa/manylinux?tab=readme-ov-file#manylinux_2_34-almalinux-9-based---alpha\n# for more information.\nmanylinux-x86_64-image = \"manylinux_2_34\"\nbefore-build = \"python ./tools/cibuildwheel_before_build.py\"\n\n[tool.cibuildwheel.linux]\n# before-all = \"apt-get install -y arpack boost ccache libomp openblas\"\nbefore-all = \"bash ./tools/cibuildwheel_before_all.sh\"\n# To include LAPACKE header.\nenvironment = { CMAKE_PREFIX_PATH = \"/usr/include/openblas\", CCACHE_CONFIGPATH = \"~/ccache.conf\" }\n\n[tool.cibuildwheel.macos]\nbefore-all = \"brew update; brew install arpack boost ccache libomp openblas\"\nenvironment = { CMAKE_PREFIX_PATH = \"$(brew --prefix arpack):$(brew --prefix boost):$(brew --prefix libomp):$(brew --prefix openblas)\", PATH = \"$(brew --prefix ccache)/libexec:$PATH\", CCACHE_CONFIGPATH = \"~/ccache.conf\" }\n\n# [tool.cibuildwheel]\n# before-build = \"bash {project}/tools/cibuildwheel_before_build.sh\"\n# # environment = { CMAKE_PREFIX_PATH = \"$(brew --prefix openblas)\", PATH = \"$(brew --prefix ccache)/libexec:$PATH\" }\n# # Alternative static configuration for macOS:\n# environment = { CMAKE_PREFIX_PATH = \"/opt/homebrew/opt/openblas\", PATH = \"/opt/homebrew/opt/ccache/libexec:$PATH\" }\n",{"_361":524,"_348":349,"_363":351},{"_399":525,"_401":526,"_403":527,"_405":406,"_407":31,"_408":447,"_41":521,"_409":528,"_411":412,"_354":449,"_90":413},"[build-system]\nrequires = [\"scikit-build-core >=0.11\", \"pybind11 >=3.0\"]\nbuild-backend = \"scikit_build_core.build\"\n\n[project]\ndynamic = [\"version\"]\nname = \"cytnx\"\nmaintainers = [\n { name = \"Kai-Hsin Wu\", email = \"kaihsinwu@gmail.com\" },\n { name = \"Chang-Teng Lin\" },\n { name = \"Hsu Ke\" },\n]\ndescription = \"A tensor network library\"\n\nreadme = \"Readme.md\"\nlicense = \"Apache-2.0\"\nlicense-files = [\"LICENSE\"]\nrequires-python = \">=3.9\"\nkeywords = [\"tensor\", \"network\", \"physics\"]\nclassifiers = [\n \"Development Status :: 5 - Production/Stable\",\n \"Topic :: Scientific/Engineering :: Physics\",\n \"Topic :: Scientific/Engineering :: Mathematics\",\n \"Operating System :: MacOS :: MacOS X\",\n \"Operating System :: POSIX :: Linux\",\n]\n\ndependencies = [\"numpy >=1.18\", \"graphviz\", \"beartype\"]\n\n[project.urls]\nDocumentation = \"https://cytnx-dev.github.io/Cytnx_doc\"\nRepository = \"https://github.com/Cytnx-dev/Cytnx.git\"\nIssues = \"https://github.com/Cytnx-dev/Cytnx/issues\"\n\n[tool.scikit-build]\nminimum-version = \"0.11\"\nwheel.packages = [\"cytnx\"]\ncmake.args = [\n # Use the default preset defined in CMakePresets.json\n \"--preset=openblas-cpu\",\n # TODO: Remove setting of generator to support builuding on Windows.\n # scikit-build uses Ninja as the default cmake generator. However, Ninja\n # conflicts against the build process of HPTT.\n \"-G Unix Makefiles\",\n]\n# Force the build directory to be \"build\" instead of a random temp folder. This helps\n# ccache caches the compiler outputs successfully.\nbuild-dir = \"build/{wheel_tag}\"\n# cp39-cp39-macosx_14_0_arm64\n\n[tool.scikit-build.metadata.version]\nprovider = \"scikit_build_core.metadata.regex\"\ninput = \"version.cmake\"\nregex = '''\nset\\(\\w+?VERSION_MAJOR\\s+(?P\\d+)\\)\nset\\(\\w+?VERSION_MINOR\\s+(?P\\d+)\\)\nset\\(\\w+?VERSION_PATCH\\s+(?P\\d+)\\)\n'''\nresult = \"{major}.{minor}.{patch}\"\n\n[tool.cibuildwheel]\n# The image used to build wheels for x86_64 on Linux is manylinux_2_28, which supports\n# older version of Linux than manylinux_2_34. However, manylinux_2_28 is AlmaLinux 8\n# based and AlmaLinux 8 ships Boost v1.66. The Boost's CMake configuration files are only\n# available since v1.70, so AlmaLinux 9 based manylinux_2_34 is picked here.\n# There is a caveat for manylinux_2_34. manylinux_2_34 assume the machines use x86-64-v2\n# architecture which is an extension of x86_64, so the wheels built with manylinux_2_34\n# may not support older machines. See https://github.com/pypa/manylinux?tab=readme-ov-file#manylinux_2_34-almalinux-9-based---alpha\n# for more information.\nmanylinux-x86_64-image = \"manylinux_2_34\"\nbefore-build = \"python ./tools/cibuildwheel_before_build.py\"\n\n[tool.cibuildwheel.linux]\n# before-all = \"apt-get install -y arpack boost ccache libomp openblas\"\nbefore-all = \"bash ./tools/cibuildwheel_before_all.sh\"\n# To include LAPACKE header.\nenvironment = { CMAKE_PREFIX_PATH = \"/usr/include/openblas\", CCACHE_CONFIGPATH = \"~/ccache.conf\" }\n\n[tool.cibuildwheel.macos]\nbefore-all = \"brew update; brew install arpack boost ccache libomp openblas\"\nenvironment = { CMAKE_PREFIX_PATH = \"$(brew --prefix arpack):$(brew --prefix boost):$(brew --prefix libomp):$(brew --prefix openblas)\", PATH = \"$(brew --prefix ccache)/libexec:$PATH\", CCACHE_CONFIGPATH = \"~/ccache.conf\" }\n\n# [tool.cibuildwheel]\n# before-build = \"bash {project}/tools/cibuildwheel_before_build.sh\"\n# # environment = { CMAKE_PREFIX_PATH = \"$(brew --prefix openblas)\", PATH = \"$(brew --prefix ccache)/libexec:$PATH\" }\n# # Alternative static configuration for macOS:\n# environment = { CMAKE_PREFIX_PATH = \"/opt/homebrew/opt/openblas\", PATH = \"/opt/homebrew/opt/ccache/libexec:$PATH\" }\n","/bin/bash -lc \"git status --short; sed -n '1,220p' pyproject.toml; test -f cmake/Modules/FindPythonLibsNew.cmake.bak && echo BAK_EXISTS\"",[529],"12693",{"_401":530,"_90":452},"git status --short; sed -n '1,220p' pyproject.toml; test -f cmake/Modules/FindPythonLibsNew.cmake.bak && echo BAK_EXISTS",{"_361":532,"_348":349,"_363":351},{"_424":533,"_392":521,"_41":-5,"_166":426,"_427":-5,"_90":428},"{\"cmd\":\"git status --short; sed -n '1,220p' pyproject.toml; test -f cmake/Modules/FindPythonLibsNew.cmake.bak && echo BAK_EXISTS\"}",{"_361":535,"_348":349,"_363":351},{"_364":-5,"_380":536,"_41":-5,"_382":537,"_90":384},"gAAAAABp8XP3hv9tYV6KKAHJmTlWbAi7XmNnszfmhtUd_GDc7LRfV1CzQzP4-1uj6sNu3v7D6qssJIrAUblCZBuzFNne_UbJMxpcXW7Y9UH1n76XLpYv0FChb-x7Fkw9Qyxa0NjEQZpEtagl6yO5AS6ISsm-5qL9yLoEbiliV2UrjGBx93iUz_LM7vzIemXPz2xkmo_H6VyWtEHzMbCd1USFlx-k8PUf0P6eVo8vQNoHeVs2H_qpD41aCVi4JTn6EJFuyaVsB-ftRaUWjlQcpcjlTWIL4tvRlS5NG-_afQb2ZXrT5TZq3e104VCeKfFQhl0W0_wMWZU5GwZ2hd_Kny9rFYz4gG1Juexz3kRpPZrq95vw8jrVKIvyD1DE_n5RtsVtxpuUJV1XpqluoqB_SCuDYFbPfiCqAPn7U141mVBiEmYd3E2MBmYl8NteqpzfFDsiFZjvauuxtX-xdcVpPIVKx2o9UVBucjciDtpdPsa4HfPv-sLckxvubjGqRVgGRBkeSP3Q5WpcGm7HC1dl_YOLUGKhwMAseODlcMF8UxkPo1rY7p1FY4JJ3_9PiqLnChi7OrLMGbxHTyeiuLHF0it0dK-10MDxBv9tGqcGhvP5EHzQVQ_-sVQnEn9pbvRjIC3dH2oPIZvfVgsPOyAT92mufswZzEuYdIStJPAJjOt6bqbUT3Lgvs_AkCW8KMdw29NZQ6iJkAW2a8c-eKnP2qqG6ZHppcUpSVVUzL2iulOPIikCGc7GFbTUrEFB3BAPJrn59RenOAhcJnaZr4b9onHOF1Pt7u-vtJ0CyIHEeLzdflZ9U059AEh9-Lz5uCacEcZirrkirdS4e7SGPjk1Hyi77jWqnuLD-YhXRjW_8_jbuVrHAYs7AoG72n92DUKVRrVR1EoX1s9xEyISFMlenwmb6MNDX74nz5iBwGmvSoV6bSyxLh0_NLlUjHrx5L-4pQoR4BB1GVAPwDbDfaXV3D6vo3mK7tkm9I5O4CjlwamP6fT-tyY_4MKfHrB0NNqetfA1Ee5awI2wGhrVLcjaBg1pWmtsf6GMQQ==",[],{"_361":539,"_348":349,"_363":351},{"_364":540,"_41":541,"_382":542,"_90":384},[],"rs_056e1704083dbc600169f173f7096c819793e345ed30112223",[],{"_361":544,"_348":349,"_363":351},{"_392":545,"_394":546,"_90":396},"call_GtYmoH283LjR9VuRiwxAHm6h","Chunk ID: c32629\nWall time: 0.0000 seconds\nProcess exited with code 1\nOriginal token count: 5\nOutput:\n/workspace/Cytnx\n",{"_361":548,"_348":349,"_363":351},{"_399":549,"_401":550,"_403":551,"_405":406,"_407":31,"_408":447,"_41":545,"_409":552,"_411":412,"_354":449,"_90":413},"/workspace/Cytnx\n","/bin/bash -lc \"pwd; rg --files -g 'AGENTS.md'\"",[553],"50863",{"_401":554,"_90":452},"pwd; rg --files -g 'AGENTS.md'",{"_361":556,"_348":349,"_363":351},{"_424":557,"_392":545,"_41":-5,"_166":426,"_427":-5,"_90":428},"{\"cmd\":\"pwd; rg --files -g 'AGENTS.md'\"}",{"_361":559,"_348":349,"_363":351},{"_364":-5,"_380":560,"_41":-5,"_382":561,"_90":384},"gAAAAABp8XP29_KGkJjY2yrQd6bf8ql2sVljJASz_E3woCbeKNRTvY7_B_k5eCp2CtU_yAEnRcOP5faRY-GA-3oAflWRUpDq6ChijUKxq7DD44FsMSC8YE-2uJ1kRIPoafFxE4IQJpKyMKjk0E7u8viBTFCeMYCskQOjkZyLjS7M56Ftmm8_Gv1LXCz0Xj4zXddvQdNKO9pO82BiNLoA2ZDIFmcKmAz3Wa06gY3AmE_Wn39366OEqRcZekU_YnZFJ1F2qXzk9zsyQQ8KZpA7eVMJQBQTymDzzZb-xq8Binn5jV0BYe4m9Go7yoTKoL18M8N6kqz5L7bKWmTBHXN6FPzw5Ip7e8qYczRx-t23dyM9x1V-gyjfJb9ash-T1X2yTgNmpuJt2THyxOovmnUM6yWJkywwQXll63CHwLtBssJEJPfDEStecU8TJylJrNHwlSp8fzVhNHiSnqCGqJdVsZQOJjMyuCvm74SsYrsxD8R1jMbSxu4ElcXDD-SsZa3_aq8w1ZTV5qRKsInxtdEzAdx1jMv8jEzEf5w7AXF0iy1hvgMJb_q_Z3LIYPO-fbATVEFwQ21J34BY7YtlQ-i8LPmjwLlD2hEOI2VBUbO94pW5l29XIbZ1618STSEfPizDofgc7EEV3PUmpEYncVpVYjZvaouLWGhdt9vifP_WvL5z94LQxDKeKv2lPneAlD_q7ms79ldjHt9Ey1fv0hC6YWz7VHzdBet-3pHGgIzQfmO1P--bAw-v5x2SeqcfynGLzdg4a1iAVB2BPgMzXMa9GkmjjSjB3IXeQLE2eu6fSHODoirE6H-pZews8s-M5FXUP9Se8uBt2jnI4XL9cjq1D-ohoTOTitbeCoVK1sYSJs7axf2xdn34C3urFLBmCvN_6p6735izNENY9ofN8DatfGROIXBi8QzgecxRPDB388XRJZyFvQQlJ0EmTVkg0pXzlVaRPnPjMZG4fq4n_ripd_BIuymLeXa4CmOv3T_n5SDA8NZHno9O4agERa50_Cfc7utX6axEYFze",[],{"_361":563,"_348":349,"_363":351},{"_364":564,"_41":565,"_382":566,"_90":384},[],"rs_056e1704083dbc600169f173f3a74481979b320a75534c2854",[],{"_361":568,"_348":349,"_363":351},{"_364":569,"_41":570,"_90":571},[572],"1302e7b3-293b-4a0b-80a2-1175f90484ea","userMessage",{"_45":573,"_574":575,"_90":45},"\nYou are Codex, assisting with follow-up actions on a GitHub pull request.\n\nInput blocks\n------------\n… # The comment or event that invoked you\n… # PR metadata (title, branches, SHAs, status, etc.)\n… # Comments / Reviews for the PR\n\nPossible triggers\n• A user mentions you (@codex)\n• A reviewer requests changes\n• An automated or internal system asks you to review / update\n\nGuidelines\n1. Read the block first and treat it as the primary intent.\n2. Always consult and to interpret and validate the trigger; use only context that materially affects your decision and ignore the rest.\n3. If the trigger comes from a comment thread, the first block will be combined earlier comments from the same thread, clearly indicated with `Comments in the same thread`.\n4. Remaining blocks are in chronological order, oldest first, one block per comment.\n5. When the trigger relates to CI/build status (e.g., “help me fix CI”), incorporate CI/status details found in as supporting context.\n6. If code change is needed, generate a **new** PR with the requested changes. The PR title and message should summarize the changes **on top** of the original pull request.\n@codex remove \"setuptools\" and cmake/Modules/FindPythonLibsNew.cmake.bak to resolve the problem in this thread (path=pyproject.toml line=2 side=RIGHT){\"title\":\"Fix: expand ~ in CCACHE_CONFIGPATH to actual home directory\",\"body\":\"- Use os.path.expanduser() to properly expand ~ in ccache config path\\r\\n- Fixes FileNotFoundError on macOS builds in cibuildwheel\\r\\n- Resolves CI failure in PR #711\",\"base_ref\":\"9b26304e0a8f80477b7c1b5387308ea6ac880d16\",\"head_ref\":\"efe359377cf55c1a5ffea31a39e95d3f9dd598c7\",\"merge_commit_sha\":null,\"type\":\"pull_request_info\"}{\"type\":\"pull_request_comment\",\"body\":\"Comments in the same thread:\\n\\nWhy setuptools is needed?\\n\\n---\\n\\ndistutils was deprecated in Python 3.10 and removed in Python 3.12. \\\\nSince the build uses Python 3.12, build 8 failed with:\\\\nModuleNotFoundError: No module named 'distutils'\\\\nAdding setuptools resolves this because it provides a distutils compatibility layer.\\\\nReference: https://github.com/b95702041/Cytnx/actions/runs/21543068253\\n\\n---\\n\\nCan you try to figure out which package provide the outdated `FindPythonLibsNew.cmake`? pybind11 has fixed the issue about `distutils` few years ago: https://github.com/pybind/pybind11/issues/3677\\n\\n---\\n\\nThe file `./cmake/Modules/FindPythonLibsNew.cmake` was copied from pybind11 on January 6, 2020 and has never been updated since.\\\\n\\n\\n---\\n\\nI checked the git history:\\\\n\\\\n`gitlog --follow ./cmake/Modules/FindPythonLibsNew.cmake`\\\\n\\\\n`commit 4af776705ff03bf6ef32a2de32b6ef58e053a214 Author: kaihsin [kaihsinwu@gmail.com](mailto:kaihsinwu@gmail.com) Date: Mon Jan 6 01:22:33 2020 -0500 update, merge complete, clean container base\\\\n`\\\\n\\\\nThis file was manually added by kaihsin in 2020, not installed from the pybind11 package.\\n\\n---\\n\\nI think its fine to remove it because we have bound with pybind11 now.\\n\\n---\\n\\nRemoved the outdated `FindPythonLibsNew.cmake`. CI now uses pybind11 3.0.2's version and passes.\\\\n\\\\nhttps://github.com/b95702041/Cytnx/actions/runs/22293371698\",\"path\":\"pyproject.toml\",\"side\":\"RIGHT\",\"line\":2}{\"type\":\"pull_request_comment\",\"body\":\"New error, failed on Building wheel steps but passed the Running before_build step.\\\\n\\\\nhttps://github.com/b95702041/Cytnx/actions/runs/21540314619\\\\n\\\\nworking on fix it now.\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"Fix Linux wheel builds for PyPI release\\\\nRemove CFLAGS/CXXFLAGS from pyproject.toml that broke GCC 14 header search. \\\\nUse find_package(Boost REQUIRED) instead of CONFIG mode in CMakeLists.txt. \\\\nUpdate cibuildwheel_before_all.sh to install ccache and dependencies for manylinux/musllinux. \\\\nAdd conditional compilation for execinfo.h in cytnx_error.hpp to support musl libc.\\\\n\\\\nIt is successfully built now.\\\\n\\\\nhttps://github.com/b95702041/Cytnx/actions/runs/21587555177\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"It is duplicated. And it may be better become the env for cibuildwheel because the section here is also used by manually installation.\",\"path\":\"pyproject.toml\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"Why not to install ccache by the package manager?\",\"path\":\"tools/cibuildwheel_before_all.sh\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"Great work! I have some questions.\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"installed by the package manager\",\"path\":\"tools/cibuildwheel_before_all.sh\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"removed the duplicates and modified the cibuildwheel env.\",\"path\":\"pyproject.toml\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"There is a thing that I have not finished. cibuildwheel builds wheels in containers on Linux, which will make ccache fails to cache across the builds with different python version. We have to mount the system directory used by ccache in the docker containers.\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"# PR #741 Review — Fix: expand ~ in CCACHE_CONFIGPATH\\n\\nPosted by Claude Code on behalf of @pcchen\\n\\n## Critical Issues (1)\\n\\n**1. `expanduser` called before null check — `TypeError` if env var is unset**\\n`tools/cibuildwheel_before_build.py`\\n\\n```python\\nccache_config_path = os.getenv('CCACHE_CONFIGPATH')\\n\\n# Expand ~ to actual home directory\\nccache_config_path = os.path.expanduser(ccache_config_path) # ← called with None if var unset\\nif not ccache_config_path:\\n raise RuntimeError('The CCACHE_CONFIGPATH environment variable must be set.')\\n```\\n\\n`os.getenv()` returns `None` if the variable is not set. `os.path.expanduser(None)` raises `TypeError` in Python 3, masking the real error message. The null check must come first:\\n\\n```python\\nccache_config_path = os.getenv('CCACHE_CONFIGPATH')\\nif not ccache_config_path:\\n raise RuntimeError('The CCACHE_CONFIGPATH environment variable must be set.')\\nccache_config_path = os.path.expanduser(ccache_config_path)\\n```\\n\\n---\\n\\n## Important Issues (3)\\n\\n**2. `libomp-devel` dropped from `dnf`/`yum` install**\\n`tools/cibuildwheel_before_all.sh`\\n\\nThe old script installed `libomp-devel` (OpenMP). The new `dnf` and `yum` branches omit it. If the C++ build uses OpenMP (`-fopenmp`), this will cause silent link failures. Only the `apk` branch doesn't need it because Alpine ships OpenMP with GCC. Add `libomp-devel` back to the `dnf`/`yum` branches.\\n\\n**3. `.bak` file committed to git**\\n`cmake/Modules/FindPythonLibsNew.cmake.bak`\\n\\nRenaming `FindPythonLibsNew.cmake` → `FindPythonLibsNew.cmake.bak` commits a backup artifact to the repo. Either delete the file if it's no longer needed, or keep the original name. A `.bak` file in `cmake/Modules` will confuse future developers.\\n\\n**4. `Boost_NO_BOOST_CMAKE=ON` only applied to Linux, not macOS**\\n`pyproject.toml`\\n\\n`CMAKE_ARGS = \\\"-DBoost_NO_BOOST_CMAKE=ON\\\"` is set in `[tool.cibuildwheel.linux]` environment but not `[tool.cibuildwheel.macos]`. Combined with the `CMakeLists.txt` change removing `CONFIG` from `find_package(Boost REQUIRED)`, this may behave inconsistently: Linux forces the find-module path, macOS uses whatever CMake defaults to with Homebrew Boost. If macOS already works, add a comment explaining why the flag is not needed there.\\n\\n---\\n\\n## Minor Issues (2)\\n\\n**5. `~` in `CCACHE_CONFIGPATH` is fragile**\\n`pyproject.toml`: `CCACHE_CONFIGPATH = \\\"~/ccache.conf\\\"` — cibuildwheel passes this as a literal string; shell expansion does not apply. The Python fix makes it work, but `$HOME/ccache.conf` would be more conventional and self-documenting.\\n\\n**6. `setuptools` added without version pin**\\n`pyproject.toml`: `\\\"setuptools\\\"` added to `build-system.requires` with no version constraint. This may cause non-reproducible builds as setuptools makes breaking changes. Consider `\\\"setuptools>=68\\\"` or similar.\\n\\n---\\n\\n## Strengths\\n\\n- The `execinfo.h` / `HAS_EXECINFO` guard in `cytnx_error.hpp` is correct and necessary for non-glibc platforms (macOS, musl/Alpine).\\n- Multi-distro `apk`/`dnf`/`yum` dispatch in `cibuildwheel_before_all.sh` is clean and extensible.\\n- `ln -sf` instead of `ln -s` prevents errors on re-runs.\\n- `manylinux_2_28` downgrade is a reasonable compatibility improvement.\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"@codex we will only support/use manylinux_2_28+ just leave dnf\",\"path\":\"tools/cibuildwheel_before_all.sh\",\"side\":\"RIGHT\",\"line\":8}","text_elements",[],{"_361":577,"_348":349,"_363":351},{"_364":578,"_366":-5,"_41":-5,"_367":-5,"_94":287,"_90":369},[579],{"_45":573,"_90":580},"input_text","turn/started",{"_348":349,"_85":583},{"_101":-5,"_41":351,"_352":584,"_354":585},[],"inProgress",{"_354":587,"_348":349},{"_588":589,"_90":590},"activeFlags",[],"active",{"_361":592,"_348":349,"_363":593},{"_364":594,"_366":-5,"_41":-5,"_367":-5,"_94":287,"_90":369},"auto-compact-0",[595,596],{"_45":598,"_90":580},{"_45":597,"_90":580},"\n /workspace/Cytnx\n bash\n 2026-04-29\n Etc/UTC\n","# AGENTS.md instructions for /workspace/Cytnx\n\n\n## Skills\nA skill is a set of local instructions to follow that is stored in a `SKILL.md` file. Below is the list of skills that can be used. Each entry includes a name, description, and file path so you can open the source for full instructions when using a specific skill.\n### Available skills\n- skill-creator: Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations. (file: /opt/codex/skills/.system/skill-creator/SKILL.md)\n- skill-installer: Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos). (file: /opt/codex/skills/.system/skill-installer/SKILL.md)\n### How to use skills\n- Discovery: The list above is the skills available in this session (name + description + file path). Skill bodies live on disk at the listed paths.\n- Trigger rules: If the user names a skill (with `$SkillName` or plain text) OR the task clearly matches a skill's description shown above, you must use that skill for that turn. Multiple mentions mean use them all. Do not carry skills across turns unless re-mentioned.\n- Missing/blocked: If a named skill isn't in the list or the path can't be read, say so briefly and continue with the best fallback.\n- How to use a skill (progressive disclosure):\n 1) After deciding to use a skill, open its `SKILL.md`. Read only enough to follow the workflow.\n 2) When `SKILL.md` references relative paths (e.g., `scripts/foo.py`), resolve them relative to the skill directory listed above first, and only consider other paths if needed.\n 3) If `SKILL.md` points to extra folders such as `references/`, load only the specific files needed for the request; don't bulk-load everything.\n 4) If `scripts/` exist, prefer running or patching them instead of retyping large code blocks.\n 5) If `assets/` or templates exist, reuse them instead of recreating from scratch.\n- Coordination and sequencing:\n - If multiple skills apply, choose the minimal set that covers the request and state the order you'll use them.\n - Announce which skill(s) you're using and why (one short line). If you skip an obvious skill, say why.\n- Context hygiene:\n - Keep context small: summarize long sections instead of pasting them; only load extra files when needed.\n - Avoid deep reference-chasing: prefer opening only files directly linked from `SKILL.md` unless you're blocked.\n - When variants exist (frameworks, providers, domains), pick only the relevant reference file(s) and note that choice.\n- Safety and fallback: If a skill can't be applied cleanly (missing files, unclear instructions), state the issue, pick the next-best approach, and continue.\n",{"_361":600,"_348":349,"_363":593},{"_364":601,"_366":-5,"_41":-5,"_367":-5,"_94":602,"_90":369},[603],"developer",{"_45":604,"_90":580},"\nFilesystem sandboxing defines which files can be read or written. `sandbox_mode` is `danger-full-access`: No filesystem sandboxing - all commands are permitted. Network access is enabled.\nApproval policy is currently never. Do not provide the `sandbox_permissions` for any reason, commands will be rejected.\n","thread/started",{"_607":608},"thread",{"_609":-5,"_610":-5,"_611":612,"_613":614,"_405":406,"_615":15,"_616":-5,"_617":-5,"_41":349,"_618":619,"_166":-5,"_155":620,"_621":184,"_411":622,"_354":623,"_75":624,"_625":614},"agentNickname","agentRole","cliVersion","0.114.0","createdAt",1777431536,"ephemeral","forkedFromId","gitInfo","modelProvider","openai","/opt/codex/sessions/2026/04/29/rollout-2026-04-29T02-58-56-019dd72c-e3ec-76c3-a968-73a8f2eef37c.jsonl","preview","vscode",{"_90":358},[],"updatedAt",[],"messages",[629],{"_41":630,"_631":632,"_633":634,"_635":634,"_364":636,"_354":637,"_366":-5,"_638":31,"_639":640,"_641":642,"_643":-5},"75828c89-b34e-43a5-b9ec-079c70a5524a","author",{"_94":287,"_166":-5,"_639":652},"create_time",1777431536.151181,"update_time",{"_648":45,"_649":650},"finished_successfully","weight","metadata",{"_644":645},"recipient","all","channel","l1239dk1",{"_646":647},"inline_comments",[],"content_type","parts",[651],"@codex remove \"setuptools\" and cmake/Modules/FindPythonLibsNew.cmake.bak to resolve the problem in this thread (path=pyproject.toml line=2 side=RIGHT)\nFix: expand ~ in CCACHE_CONFIGPATH to actual home directory\n\n- Use os.path.expanduser() to properly expand ~ in ccache config path\r\n- Fixes FileNotFoundError on macOS builds in cibuildwheel\r\n- Resolves CI failure in PR #711\nComments in the same thread:\n\nWhy setuptools is needed?\n\n---\n\ndistutils was deprecated in Python 3.10 and removed in Python 3.12. \\nSince the build uses Python 3.12, build 8 failed with:\\nModuleNotFoundError: No module named 'distutils'\\nAdding setuptools resolves this because it provides a distutils compatibility layer.\\nReference: https://github.com/b95702041/Cytnx/actions/runs/21543068253\n\n---\n\nCan you try to figure out which package provide the outdated `FindPythonLibsNew.cmake`? pybind11 has fixed the issue about `distutils` few years ago: https://github.com/pybind/pybind11/issues/3677\n\n---\n\nThe file `./cmake/Modules/FindPythonLibsNew.cmake` was copied from pybind11 on January 6, 2020 and has never been updated since.\\n\n\n---\n\nI checked the git history:\\n\\n`gitlog --follow ./cmake/Modules/FindPythonLibsNew.cmake`\\n\\n`commit 4af776705ff03bf6ef32a2de32b6ef58e053a214 Author: kaihsin [kaihsinwu@gmail.com](mailto:kaihsinwu@gmail.com) Date: Mon Jan 6 01:22:33 2020 -0500 update, merge complete, clean container base\\n`\\n\\nThis file was manually added by kaihsin in 2020, not installed from the pybind11 package.\n\n---\n\nI think its fine to remove it because we have bound with pybind11 now.\n\n---\n\nRemoved the outdated `FindPythonLibsNew.cmake`. CI now uses pybind11 3.0.2's version and passes.\\n\\nhttps://github.com/b95702041/Cytnx/actions/runs/22293371698\nNew error, failed on Building wheel steps but passed the Running before_build step.\\n\\nhttps://github.com/b95702041/Cytnx/actions/runs/21540314619\\n\\nworking on fix it now.\nFix Linux wheel builds for PyPI release\\nRemove CFLAGS/CXXFLAGS from pyproject.toml that broke GCC 14 header search. \\nUse find_package(Boost REQUIRED) instead of CONFIG mode in CMakeLists.txt. \\nUpdate cibuildwheel_before_all.sh to install ccache and dependencies for manylinux/musllinux. \\nAdd conditional compilation for execinfo.h in cytnx_error.hpp to support musl libc.\\n\\nIt is successfully built now.\\n\\nhttps://github.com/b95702041/Cytnx/actions/runs/21587555177\nIt is duplicated. And it may be better become the env for cibuildwheel because the section here is also used by manually installation.\nWhy not to install ccache by the package manager?\nGreat work! I have some questions.\ninstalled by the package manager\nremoved the duplicates and modified the cibuildwheel env.\nThere is a thing that I have not finished. cibuildwheel builds wheels in containers on Linux, which will make ccache fails to cache across the builds with different python version. We have to mount the system directory used by ccache in the docker containers.\n# PR #741 Review — Fix: expand ~ in CCACHE_CONFIGPATH\n\nPosted by Claude Code on behalf of @pcchen\n\n## Critical Issues (1)\n\n**1. `expanduser` called before null check — `TypeError` if env var is unset**\n`tools/cibuildwheel_before_build.py`\n\n```python\nccache_config_path = os.getenv('CCACHE_CONFIGPATH')\n\n# Expand ~ to actual home directory\nccache_config_path = os.path.expanduser(ccache_config_path) # ← called with None if var unset\nif not ccache_config_path:\n raise RuntimeError('The CCACHE_CONFIGPATH environment variable must be set.')\n```\n\n`os.getenv()` returns `None` if the variable is not set. `os.path.expanduser(None)` raises `TypeError` in Python 3, masking the real error message. The null check must come first:\n\n```python\nccache_config_path = os.getenv('CCACHE_CONFIGPATH')\nif not ccache_config_path:\n raise RuntimeError('The CCACHE_CONFIGPATH environment variable must be set.')\nccache_config_path = os.path.expanduser(ccache_config_path)\n```\n\n---\n\n## Important Issues (3)\n\n**2. `libomp-devel` dropped from `dnf`/`yum` install**\n`tools/cibuildwheel_before_all.sh`\n\nThe old script installed `libomp-devel` (OpenMP). The new `dnf` and `yum` branches omit it. If the C++ build uses OpenMP (`-fopenmp`), this will cause silent link failures. Only the `apk` branch doesn't need it because Alpine ships OpenMP with GCC. Add `libomp-devel` back to the `dnf`/`yum` branches.\n\n**3. `.bak` file committed to git**\n`cmake/Modules/FindPythonLibsNew.cmake.bak`\n\nRenaming `FindPythonLibsNew.cmake` → `FindPythonLibsNew.cmake.bak` commits a backup artifact to the repo. Either delete the file if it's no longer needed, or keep the original name. A `.bak` file in `cmake/Modules` will confuse future developers.\n\n**4. `Boost_NO_BOOST_CMAKE=ON` only applied to Linux, not macOS**\n`pyproject.toml`\n\n`CMAKE_ARGS = \"-DBoost_NO_BOOST_CMAKE=ON\"` is set in `[tool.cibuildwheel.linux]` environment but not `[tool.cibuildwheel.macos]`. Combined with the `CMakeLists.txt` change removing `CONFIG` from `find_package(Boost REQUIRED)`, this may behave inconsistently: Linux forces the find-module path, macOS uses whatever CMake defaults to with Homebrew Boost. If macOS already works, add a comment explaining why the flag is not needed there.\n\n---\n\n## Minor Issues (2)\n\n**5. `~` in `CCACHE_CONFIGPATH` is fragile**\n`pyproject.toml`: `CCACHE_CONFIGPATH = \"~/ccache.conf\"` — cibuildwheel passes this as a literal string; shell expansion does not apply. The Python fix makes it work, but `$HOME/ccache.conf` would be more conventional and self-documenting.\n\n**6. `setuptools` added without version pin**\n`pyproject.toml`: `\"setuptools\"` added to `build-system.requires` with no version constraint. This may cause non-reproducible builds as setuptools makes breaking changes. Consider `\"setuptools>=68\"` or similar.\n\n---\n\n## Strengths\n\n- The `execinfo.h` / `HAS_EXECINFO` guard in `cytnx_error.hpp` is correct and necessary for non-glibc platforms (macOS, musl/Alpine).\n- Multi-distro `apk`/`dnf`/`yum` dispatch in `cibuildwheel_before_all.sh` is clean and extensible.\n- `ln -sf` instead of `ln -s` prevents errors on re-runs.\n- `manylinux_2_28` downgrade is a reasonable compatibility improvement.\n@codex we will only support/use manylinux_2_28+ just leave dnf",{},"created",1777431583.2754352,"Completing the task","event_type","info",{"_90":369,"_94":91,"_364":663},{"_90":660,"_661":662},"partial_repo_snapshot","files",[],[664],{"_648":45,"_45":371},{"_90":287,"_41":82,"_94":287,"_667":668,"_669":670,"_671":672,"_130":-5,"_117":673},[81],"input_items",[691,692,693,694,695,696,697,698,699,700,701,702,703],"external_post_config",{"_674":675,"_227":181,"_676":267,"_238":-5,"_677":221,"_678":-5,"_679":680,"_681":682,"_683":-5,"_684":-5,"_685":686,"_687":15,"_688":57,"_689":52,"_690":15},"user_model_slug","slug",1777431527.124471,"installation_id",66798991,"pr_number","repo_id","review_trigger","comment_id",2766857369,"comment_type","pr","pr_write_guard_token","pending_pr_reaction_id","pending_comment_reaction_id",385872435,"comment_if_no_findings","comment_on_error","share_url","is_parallel_review",{"_90":369,"_94":287,"_364":725},{"_274":275,"_276":277,"_722":127,"_723":282,"_283":-5,"_90":724},{"_90":704,"_276":720,"_155":421,"_707":708,"_709":721},{"_90":704,"_276":719,"_155":-5,"_707":-5,"_709":-5},{"_90":704,"_276":718,"_155":-5,"_707":-5,"_709":-5},{"_90":704,"_276":717,"_155":421,"_707":708,"_709":-5},{"_90":704,"_276":716,"_155":706,"_707":708,"_709":-5},{"_90":704,"_276":715,"_155":-5,"_707":-5,"_709":-5},{"_90":704,"_276":714,"_155":706,"_707":708,"_709":-5},{"_90":704,"_276":713,"_155":421,"_707":708,"_709":-5},{"_90":704,"_276":712,"_155":-5,"_707":-5,"_709":-5},{"_90":704,"_276":711,"_155":-5,"_707":-5,"_709":-5},{"_90":704,"_276":705,"_155":706,"_707":708,"_709":710},"pull_request_comment","@codex we will only support/use manylinux_2_28+ just leave dnf","tools/cibuildwheel_before_all.sh","side","RIGHT","line",8,"# PR #741 Review — Fix: expand ~ in CCACHE_CONFIGPATH\n\nPosted by Claude Code on behalf of @pcchen\n\n## Critical Issues (1)\n\n**1. `expanduser` called before null check — `TypeError` if env var is unset**\n`tools/cibuildwheel_before_build.py`\n\n```python\nccache_config_path = os.getenv('CCACHE_CONFIGPATH')\n\n# Expand ~ to actual home directory\nccache_config_path = os.path.expanduser(ccache_config_path) # ← called with None if var unset\nif not ccache_config_path:\n raise RuntimeError('The CCACHE_CONFIGPATH environment variable must be set.')\n```\n\n`os.getenv()` returns `None` if the variable is not set. `os.path.expanduser(None)` raises `TypeError` in Python 3, masking the real error message. The null check must come first:\n\n```python\nccache_config_path = os.getenv('CCACHE_CONFIGPATH')\nif not ccache_config_path:\n raise RuntimeError('The CCACHE_CONFIGPATH environment variable must be set.')\nccache_config_path = os.path.expanduser(ccache_config_path)\n```\n\n---\n\n## Important Issues (3)\n\n**2. `libomp-devel` dropped from `dnf`/`yum` install**\n`tools/cibuildwheel_before_all.sh`\n\nThe old script installed `libomp-devel` (OpenMP). The new `dnf` and `yum` branches omit it. If the C++ build uses OpenMP (`-fopenmp`), this will cause silent link failures. Only the `apk` branch doesn't need it because Alpine ships OpenMP with GCC. Add `libomp-devel` back to the `dnf`/`yum` branches.\n\n**3. `.bak` file committed to git**\n`cmake/Modules/FindPythonLibsNew.cmake.bak`\n\nRenaming `FindPythonLibsNew.cmake` → `FindPythonLibsNew.cmake.bak` commits a backup artifact to the repo. Either delete the file if it's no longer needed, or keep the original name. A `.bak` file in `cmake/Modules` will confuse future developers.\n\n**4. `Boost_NO_BOOST_CMAKE=ON` only applied to Linux, not macOS**\n`pyproject.toml`\n\n`CMAKE_ARGS = \"-DBoost_NO_BOOST_CMAKE=ON\"` is set in `[tool.cibuildwheel.linux]` environment but not `[tool.cibuildwheel.macos]`. Combined with the `CMakeLists.txt` change removing `CONFIG` from `find_package(Boost REQUIRED)`, this may behave inconsistently: Linux forces the find-module path, macOS uses whatever CMake defaults to with Homebrew Boost. If macOS already works, add a comment explaining why the flag is not needed there.\n\n---\n\n## Minor Issues (2)\n\n**5. `~` in `CCACHE_CONFIGPATH` is fragile**\n`pyproject.toml`: `CCACHE_CONFIGPATH = \"~/ccache.conf\"` — cibuildwheel passes this as a literal string; shell expansion does not apply. The Python fix makes it work, but `$HOME/ccache.conf` would be more conventional and self-documenting.\n\n**6. `setuptools` added without version pin**\n`pyproject.toml`: `\"setuptools\"` added to `build-system.requires` with no version constraint. This may cause non-reproducible builds as setuptools makes breaking changes. Consider `\"setuptools>=68\"` or similar.\n\n---\n\n## Strengths\n\n- The `execinfo.h` / `HAS_EXECINFO` guard in `cytnx_error.hpp` is correct and necessary for non-glibc platforms (macOS, musl/Alpine).\n- Multi-distro `apk`/`dnf`/`yum` dispatch in `cibuildwheel_before_all.sh` is clean and extensible.\n- `ln -sf` instead of `ln -s` prevents errors on re-runs.\n- `manylinux_2_28` downgrade is a reasonable compatibility improvement.","There is a thing that I have not finished. cibuildwheel builds wheels in containers on Linux, which will make ccache fails to cache across the builds with different python version. We have to mount the system directory used by ccache in the docker containers.","removed the duplicates and modified the cibuildwheel env.","installed by the package manager","Great work! I have some questions.","Why not to install ccache by the package manager?","It is duplicated. And it may be better become the env for cibuildwheel because the section here is also used by manually installation.","Fix Linux wheel builds for PyPI release\\nRemove CFLAGS/CXXFLAGS from pyproject.toml that broke GCC 14 header search. \\nUse find_package(Boost REQUIRED) instead of CONFIG mode in CMakeLists.txt. \\nUpdate cibuildwheel_before_all.sh to install ccache and dependencies for manylinux/musllinux. \\nAdd conditional compilation for execinfo.h in cytnx_error.hpp to support musl libc.\\n\\nIt is successfully built now.\\n\\nhttps://github.com/b95702041/Cytnx/actions/runs/21587555177","New error, failed on Building wheel steps but passed the Running before_build step.\\n\\nhttps://github.com/b95702041/Cytnx/actions/runs/21540314619\\n\\nworking on fix it now.","Comments in the same thread:\n\nWhy setuptools is needed?\n\n---\n\ndistutils was deprecated in Python 3.10 and removed in Python 3.12. \\nSince the build uses Python 3.12, build 8 failed with:\\nModuleNotFoundError: No module named 'distutils'\\nAdding setuptools resolves this because it provides a distutils compatibility layer.\\nReference: https://github.com/b95702041/Cytnx/actions/runs/21543068253\n\n---\n\nCan you try to figure out which package provide the outdated `FindPythonLibsNew.cmake`? pybind11 has fixed the issue about `distutils` few years ago: https://github.com/pybind/pybind11/issues/3677\n\n---\n\nThe file `./cmake/Modules/FindPythonLibsNew.cmake` was copied from pybind11 on January 6, 2020 and has never been updated since.\\n\n\n---\n\nI checked the git history:\\n\\n`gitlog --follow ./cmake/Modules/FindPythonLibsNew.cmake`\\n\\n`commit 4af776705ff03bf6ef32a2de32b6ef58e053a214 Author: kaihsin [kaihsinwu@gmail.com](mailto:kaihsinwu@gmail.com) Date: Mon Jan 6 01:22:33 2020 -0500 update, merge complete, clean container base\\n`\\n\\nThis file was manually added by kaihsin in 2020, not installed from the pybind11 package.\n\n---\n\nI think its fine to remove it because we have bound with pybind11 now.\n\n---\n\nRemoved the outdated `FindPythonLibsNew.cmake`. CI now uses pybind11 3.0.2's version and passes.\\n\\nhttps://github.com/b95702041/Cytnx/actions/runs/22293371698",2,"base_ref","head_ref","pull_request_info",[726],{"_648":45,"_45":727},"@codex remove \"setuptools\" and cmake/Modules/FindPythonLibsNew.cmake.bak to resolve the problem in this thread (path=pyproject.toml line=2 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