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EstimateEquivalentSquare operation (Sterling 4*A/P)","body","### Motivation\n- Provide a DCMA operation that accepts an ROI (one or more closed planar contours in mm) representing a radiotherapy field aperture and compute the Sterling equivalent square (eq.sq. = 4*A/P) for downstream use.\n- Store the computed equivalent-square in the global parameter table under a user-provided key so other operations or scripts can consume the result.\n- Add unit coverage for canonical cases (square, rectangle, and multiple apertures) to catch regression in area/perimeter handling.\n\n### Description\n- Added `src/Operations/EstimateEquivalentSquare.h` and `src/Operations/EstimateEquivalentSquare.cc` implementing `EstimateEquivalentSquareForContours` and the operation entrypoint `EstimateEquivalentSquare` which validates closed contours, sums areas and perimeters using `Get_Signed_Area(true)` and `Perimeter()`, computes `4*A/P`, and stores the value as a string in the invocation parameter table under the user-provided `ParameterKey` with full double precision.\n- Exposed operation documentation and arguments (`NormalizedROILabelRegex`, `ROILabelRegex`, `ROISelection`, and required `ParameterKey` with default `EquivalentSquare_mm`) via `OpArgDocEstimateEquivalentSquare`.\n- Added doctest unit cases embedded in the operation source covering square, rectangular, and multi-aperture examples (constructs rectangles via helper `make_rectangle` and `make_collection` and asserts expected equivalent-square values).\n- Registered the operation by including `EstimateEquivalentSquare.h` in `src/Operation_Dispatcher.cc`, adding `EstimateEquivalentSquare` to the known operations map, and added `EstimateEquivalentSquare.cc` to the `src/Operations/CMakeLists.txt` build list.\n\n### Testing\n- Embedded `doctest` cases were added to `EstimateEquivalentSquare.cc` (tests for square, rectangle, and multiple apertures) but were not executed in this environment because configuration/build did not complete.\n- Attempted to configure the project with CMake (`-DWITH_*` flags to disable optional deps), but configuration failed because the required `Ygor` dependency could not be found or fetched in this environment (CMake configuration error), so no compile or test run completed.\n\n------\n[Codex 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Summary\n* Added `EquivalentSquareHoleDetection` plus reusable free-function declarations for contour simplicity checks, so other code can call self-intersection, inter-contour intersection, and simple nested-arrangement validation. 【F:src/Operations/EstimateEquivalentSquare.h†L11-L22】\n* Implemented non-simple contour rejection for self-intersections, crossing contours, and T-intersections before equivalent-square calculation. 【F:src/Operations/EstimateEquivalentSquare.cc†L82-L120】\n* Updated equivalent-square area handling to support signed contour orientation or simple even/odd overlap nesting while preserving perimeter contribution from all boundaries. 【F:src/Operations/EstimateEquivalentSquare.cc†L122-L161】\n* Added the `HoleDetection` operation argument and parsing for `signed` vs. `overlap`, with non-simple failures logged via `YLOGWARN` and reported through a `false` operation return status. 【F:src/Operations/EstimateEquivalentSquare.cc†L200-L208】【F:src/Operations/EstimateEquivalentSquare.cc†L240-L262】\n* Added doctest coverage for signed holes, simple-overlap holes, self-intersecting contours, crossing contours, and T-intersections. 【F:src/Operations/EstimateEquivalentSquare.cc†L318-L343】\n* Committed changes on the current branch with commit `f54e5ca` and created the follow-up PR.\n\n**Testing**\n* ✅ `git diff --check`\n* ⚠️ `cmake -S . -B /tmp/dicomautomaton-build -DWITH_WT=OFF -DWITH_GNU_GSL=OFF -DWITH_THRIFT=OFF -DWITH_DCMTK=OFF -DWITH_POSTGRES=OFF -DWITH_OPENSSL=OFF` (configuration could not complete because the required `Ygor` dependency was not found/could not be fetched in this 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commit status**\n\nI see that the status shows untracked files only, which is good. I want to make sure to note if anything is unrelated. I'll also make a final mention of the commit hash. It's important to ensure that citations are included. I need to keep everything in order to avoid confusion later on. Let's make sure all these elements are clear and properly documented!","summary_text",{"_440":469,"_421":422,"_442":428},{"_443":470,"_42":471,"_462":472,"_93":464},[],"rs_0db9a5c18f3fd3b6016a332288d1a0819a963c69671bc3da86",[466],{"_440":474,"_421":422,"_442":428},{"_475":476,"_446":-5,"_477":478,"_93":479},"call_id","call_9vPyla214NH3emYHkQNn1L5c","output","Chunk ID: 8a58ca\nWall time: 0.0008 seconds\nProcess exited with code 0\nOriginal token count: 4187\nOutput:\n 1\t// EstimateEquivalentSquare.h.\n 2\t\n 3\t#pragma once\n 4\t\n 5\t#include \n 6\t#include \n 7\t\n 8\t#include \"../Structs.h\"\n 9\t\n 10\t\n 11\tenum class EquivalentSquareHoleDetection {\n 12\t SignedContourOrientation,\n 13\t SimpleOverlap,\n 14\t};\n 15\t\n 16\tbool ContourHasSelfIntersection(const contour_of_points &c);\n 17\tbool ContourCollectionsHaveIntersections(const contour_collection &cc);\n 18\tbool ContourCollectionIsSimpleNested(const contour_collection &cc);\n 19\t\n 20\tdouble EstimateEquivalentSquareForContours(\n 21\t const contour_collection &cc,\n 22\t EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation);\n 23\t\n 24\tOperationDoc OpArgDocEstimateEquivalentSquare();\n 25\t\n 26\tbool EstimateEquivalentSquare(Drover &DICOM_data,\n 27\t const OperationArgPkg& /*OptArgs*/,\n 28\t std::map& /*InvocationMetadata*/,\n 29\t const std::string& /*FilenameLex*/);\n 30\tnamespace {\n 31\tconstexpr double contour_eps = 1.0e-8;\n 32\t\n 33\tstruct point2 {\n 34\t double x = 0.0;\n 35\t double y = 0.0;\n 36\t};\n 37\t\n 38\tstd::vector contour_points_2d(const contour_of_points &c){\n 39\t std::vector out;\n 40\t out.reserve(c.points.size());\n 41\t for(const auto &p : c.points) out.push_back({p.x, p.y});\n 42\t return out;\n 43\t}\n 44\t\n 45\tdouble orient(const point2 &a, const point2 &b, const point2 &c){\n 46\t return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n 47\t}\n 48\t\n 49\t\n 50\tbool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n 51\t if(std::abs(orient(a, b, p)) > contour_eps) return false;\n 52\t return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n 53\t && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n 54\t}\n 55\t\n 56\tbool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n 57\t const auto o1 = orient(a, b, c);\n 58\t const auto o2 = orient(a, b, d);\n 59\t const auto o3 = orient(c, d, a);\n 60\t const auto o4 = orient(c, d, b);\n 61\t if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n 62\t && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n 63\t return true;\n 64\t }\n 65\t return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n 66\t || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n 67\t}\n 68\t\n 69\tbool point_in_contour(const point2 &p, const contour_of_points &c){\n 70\t const auto pts = contour_points_2d(c);\n 71\t bool inside = false;\n 72\t for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n 73\t if(point_on_segment(p, pts[j], pts[i])) return true;\n 74\t const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\n 75\t && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n 76\t if(crosses) inside = !inside;\n 77\t }\n 78\t return inside;\n 79\t}\n 80\t}\n 81\t\n 82\tbool ContourHasSelfIntersection(const contour_of_points &c){\n 83\t const auto pts = contour_points_2d(c);\n 84\t if(pts.size() < 3U) return true;\n 85\t for(size_t i = 0U; i < pts.size(); ++i){\n 86\t const auto in = (i + 1U) % pts.size();\n 87\t for(size_t j = i + 1U; j < pts.size(); ++j){\n 88\t const auto jn = (j + 1U) % pts.size();\n 89\t const bool adjacent = (i == j) || (in == j) || (jn == i);\n 90\t if(adjacent) continue;\n 91\t if(segments_intersect_or_touch(pts[i], pts[in], pts[j], pts[jn])) return true;\n 92\t }\n 93\t }\n 94\t return false;\n 95\t}\n 96\t\n 97\tbool ContourCollectionsHaveIntersections(const contour_collection &cc){\n 98\t for(auto a_it = cc.contours.begin(); a_it != cc.contours.end(); ++a_it){\n 99\t const auto a_pts = contour_points_2d(*a_it);\n 100\t auto b_it = a_it;\n 101\t for(++b_it; b_it != cc.contours.end(); ++b_it){\n 102\t const auto b_pts = contour_points_2d(*b_it);\n 103\t for(size_t i = 0U; i < a_pts.size(); ++i){\n 104\t const auto in = (i + 1U) % a_pts.size();\n 105\t for(size_t j = 0U; j < b_pts.size(); ++j){\n 106\t const auto jn = (j + 1U) % b_pts.size();\n 107\t if(segments_intersect_or_touch(a_pts[i], a_pts[in], b_pts[j], b_pts[jn])) return true;\n 108\t }\n 109\t }\n 110\t }\n 111\t }\n 112\t return false;\n 113\t}\n 114\t\n 115\tbool ContourCollectionIsSimpleNested(const contour_collection &cc){\n 116\t for(const auto &c : cc.contours){\n 117\t if(!c.closed || (c.points.size() < 3U) || ContourHasSelfIntersection(c)) return false;\n 118\t }\n 119\t return !ContourCollectionsHaveIntersections(cc);\n 120\t}\n 121\t\n 122\tdouble EstimateEquivalentSquareForContours(const contour_collection &cc,\n 123\t const EquivalentSquareHoleDetection hole_detection){\n 124\t if(!ContourCollectionIsSimpleNested(cc)){\n 125\t throw std::invalid_argument(\"Non-simple contour arrangement encountered; contours must be closed, non-self-intersecting, and non-intersecting\");\n 126\t }\n 127\t\n 128\t double area = 0.0;\n 129\t double perimeter = 0.0;\n 130\t\n 131\t for(auto c_it = cc.contours.begin(); c_it != cc.contours.end(); ++c_it){\n 132\t const auto signed_area = c_it->Get_Signed_Area(true);\n 133\t const auto abs_area = std::abs(signed_area);\n 134\t const auto c_perimeter = c_it->Perimeter();\n 135\t if(!std::isfinite(signed_area) || !std::isfinite(c_perimeter)){\n 136\t throw std::invalid_argument(\"Encountered non-finite contour area or perimeter\");\n 137\t }\n 138\t if(abs_area <= 0.0 || c_perimeter <= 0.0){\n 139\t throw std::invalid_argument(\"Encountered degenerate contour with non-positive area or perimeter\");\n 140\t }\n 141\t\n 142\t if(hole_detection == EquivalentSquareHoleDetection::SignedContourOrientation){\n 143\t area += signed_area;\n 144\t }else{\n 145\t size_t containing_contours = 0U;\n 146\t const auto probe = contour_points_2d(*c_it).front();\n 147\t for(auto other_it = cc.contours.begin(); other_it != cc.contours.end(); ++other_it){\n 148\t if(other_it == c_it) continue;\n 149\t if(point_in_contour(probe, *other_it)) ++containing_contours;\n 150\t }\n 151\t area += ((containing_contours % 2U) == 0U) ? abs_area : -abs_area;\n 152\t }\n 153\t perimeter += c_perimeter;\n 154\t }\n 155\t\n 156\t area = std::abs(area);\n 157\t if(area <= 0.0 || perimeter <= 0.0){\n 158\t throw std::invalid_argument(\"No valid contour aperture was available\");\n 159\t }\n 160\t\n 161\t return 4.0 * area / perimeter;\n 162\t}\n 163\t\n 164\tOperationDoc OpArgDocEstimateEquivalentSquare(){\n 165\t OperationDoc out;\n 166\t out.name = \"EstimateEquivalentSquare\";\n 167\t\n 168\t out.tags.emplace_back(\"category: contour processing\");\n 169\t out.tags.emplace_back(\"category: parameter table\");\n 170\t out.tags.emplace_back(\"category: radiotherapy treatment planning\");\n 171\t\n 172\t out.desc =\n 173\t \"Estimate the Sterling equivalent square for an ROI containing one or more closed planar contours.\"\n 174\t \" The selected contours are interpreted as radiotherapy field apertures in millimetres, and the\"\n 175\t \" equivalent square is computed as 4*A/P, where A is the total aperture area and P is the total\"\n 176\t \" aperture perimeter. The result has scale units of millimetres and is stored in the global parameter table.\";\n 177\t\n 178\t out.args.emplace_back();\n 179\t out.args.back() = NCWhitelistOpArgDoc();\n 180\t out.args.back().name = \"NormalizedROILabelRegex\";\n 190\t out.args.back().name = \"ROISelection\";\n 191\t out.args.back().default_val = \"all\";\n 192\t\n 193\t out.args.emplace_back();\n 194\t out.args.back().name = \"ParameterKey\";\n 195\t out.args.back().desc = \"The key under which the equivalent square will be stored in the global parameter table.\";\n 196\t out.args.back().default_val = \"EquivalentSquare_mm\";\n 197\t out.args.back().expected = true;\n 198\t out.args.back().examples = { \"FieldEquivalentSquare\", \"eqsq_mm\" };\n 199\t\n 200\t out.args.emplace_back();\n 201\t out.args.back().name = \"HoleDetection\";\n 202\t out.args.back().desc = \"Controls how nested contours are interpreted as holes, islands, and islands with holes.\"\n 203\t \" 'signed' uses contour signedness/orientation. 'overlap' ignores orientation and alternates\"\n 204\t \" aperture/hole status by nesting depth (even-odd-even-odd). Non-simple arrangements,\"\n 205\t \" including self-intersections, contour intersections, and T-intersections, are rejected.\";\n 206\t out.args.back().default_val = \"signed\";\n 207\t out.args.back().expected = true;\n 208\t out.args.back().examples = { \"signed\", \"overlap\" };\n 209\t\n 210\t return out;\n 211\t}\n 212\t\n 213\tbool EstimateEquivalentSquare(Drover& DICOM_data,\n 214\t const OperationArgPkg& OptArgs,\n 215\t std::map& InvocationMetadata,\n 216\t const std::string& /*FilenameLex*/){\n 217\t\n 218\t //---------------------------------------------- User Parameters --------------------------------------------------\n 219\t const auto NormalizedROILabelRegex = OptArgs.getValueStr(\"NormalizedROILabelRegex\").value();\n 220\t const auto ROILabelRegex = OptArgs.getValueStr(\"ROILabelRegex\").value();\n 221\t const auto ROISelection = OptArgs.getValueStr(\"ROISelection\").value();\n 222\t const auto ParameterKey = OptArgs.getValueStr(\"ParameterKey\").value();\n 223\t const auto HoleDetectionStr = OptArgs.getValueStr(\"HoleDetection\").value();\n 224\t\n 225\t //-----------------------------------------------------------------------------------------------------------------\n 226\t if(ParameterKey.empty()){\n 227\t throw std::invalid_argument(\"ParameterKey must not be empty\");\n 228\t }\n 229\t\n 230\t auto cc_all = All_CCs( DICOM_data );\n 231\t auto cc_ROIs = Whitelist( cc_all, ROILabelRegex, NormalizedROILabelRegex, ROISelection );\n 232\t if(cc_ROIs.empty()){\n 233\t throw std::invalid_argument(\"No contours selected. Cannot continue.\");\n 234\t }\n 235\t\n 236\t if(cc_ROIs.size() != 1UL){\n 237\t throw std::invalid_argument(\"Exactly one ROI must be selected for equivalent square estimation\");\n 238\t }\n 239\t\n 240\t const std::regex signed_regex(\"signed|orientation|contour_signedness\");\n 241\t const std::regex overlap_regex(\"overlap|simple_overlap|even_odd|evenodd\");\n 242\t EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n 243\t if(std::regex_match(HoleDetectionStr, signed_regex)){\n 244\t hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n 245\t }else if(std::regex_match(HoleDetectionStr, overlap_regex)){\n 246\t hole_detection = EquivalentSquareHoleDetection::SimpleOverlap;\n 247\t }else{\n 248\t throw std::invalid_argument(\"HoleDetection must be 'signed' or 'overlap'\");\n 249\t }\n 250\t\n 251\t try{\n 252\t const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get(), hole_detection);\n 253\t\n 254\t std::ostringstream ss;\n 255\t ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n 256\t InvocationMetadata[ParameterKey] = ss.str();\n 257\t\n 258\t YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n 259\t return true;\n 260\t }catch(const std::invalid_argument &e){\n 261\t YLOGWARN(\"Unable to estimate equivalent square: \" << e.what());\n 262\t return false;\n 263\t }\n 264\t}\n 265\t\n 266\tnamespace {\n 267\tcontour_of_points make_rectangle(const double width,\n 268\t const double height,\n 269\t const double x_offset = 0.0,\n 270\t const double y_offset = 0.0,\n 271\t const bool clockwise = false){\n 272\t std::list> points{\n 273\t vec3(x_offset, y_offset, 0.0),\n 274\t vec3(x_offset + width, y_offset, 0.0),\n 275\t vec3(x_offset + width, y_offset + height, 0.0),\n 276\t vec3(x_offset, y_offset + height, 0.0)\n 277\t };\n 278\t if(clockwise) points.reverse();\n 279\t contour_of_points c(points);\n 280\t c.closed = true;\n 281\t return c;\n 282\t}\n 283\t\n 284\tcontour_of_points make_bowtie(){\n 285\t contour_of_points c(std::list>{\n 286\t vec3(0.0, 0.0, 0.0),\n 287\t vec3(10.0, 10.0, 0.0),\n 288\t vec3(0.0, 10.0, 0.0),\n 289\t vec3(10.0, 0.0, 0.0)\n 290\t });\n 291\t c.closed = true;\n 292\t return c;\n 293\t}\n 294\t\n 295\tcontour_collection make_collection(std::list> contours){\n 296\t contour_collection cc;\n 297\t cc.contours = std::move(contours);\n 298\t return cc;\n 299\t}\n 300\t}\n 301\t\n 302\tTEST_CASE(\"EstimateEquivalentSquareForContours handles square apertures\"){\n 303\t const auto cc = make_collection({ make_rectangle(10.0, 10.0) });\n 304\t CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(10.0));\n 305\t}\n 306\t\n 307\tTEST_CASE(\"EstimateEquivalentSquareForContours handles rectangular apertures\"){\n 308\t const auto cc = make_collection({ make_rectangle(10.0, 20.0) });\n 309\t CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(40.0 / 3.0));\n 310\t}\n 311\t\n 312\tTEST_CASE(\"EstimateEquivalentSquareForContours handles multiple apertures\"){\n 313\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 20.0) });\n 314\t CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(25.0 / 3.0));\n 315\t}\n 316\t\n 317\t\n 318\tTEST_CASE(\"EstimateEquivalentSquareForContours handles signed holes\"){\n 319\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5, true) });\n 320\t CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SignedContourOrientation) == doctest::Approx(5.0));\n 321\t}\n 322\t\n 323\tTEST_CASE(\"EstimateEquivalentSquareForContours handles simple-overlap holes\"){\n 324\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5) });\n 325\t CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SimpleOverlap) == doctest::Approx(5.0));\n 326\t}\n 327\t\n 328\tTEST_CASE(\"ContourHasSelfIntersection rejects bowtie contours\"){\n 329\t CHECK(ContourHasSelfIntersection(make_bowtie()));\n 330\t CHECK_THROWS_AS(EstimateEquivalentSquareForContours(make_collection({ make_bowtie() })), std::invalid_argument);\n 331\t}\n 332\t\n 333\tTEST_CASE(\"ContourCollectionsHaveIntersections rejects crossing contours\"){\n 334\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(10.0, 10.0, 5.0, 5.0) });\n 335\t CHECK(ContourCollectionsHaveIntersections(cc));\n 336\t CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n 337\t}\n 338\t\n 339\tTEST_CASE(\"ContourCollectionsHaveIntersections rejects T-intersections\"){\n 340\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 5.0, 2.5) });\n 341\t CHECK(ContourCollectionsHaveIntersections(cc));\n 342\t CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n 343\t}\n?? py/poetry.lock\n","function_call_output",{"_440":481,"_421":422,"_442":428},{"_482":483,"_484":485,"_486":487,"_488":489,"_426":32,"_490":32,"_42":476,"_491":492,"_493":494,"_433":114,"_93":495},"aggregatedOutput"," 1\t// EstimateEquivalentSquare.h.\n 2\t\n 3\t#pragma once\n 4\t\n 5\t#include \n 6\t#include \n 7\t\n 8\t#include \"../Structs.h\"\n 9\t\n 10\t\n 11\tenum class EquivalentSquareHoleDetection {\n 12\t SignedContourOrientation,\n 13\t SimpleOverlap,\n 14\t};\n 15\t\n 16\tbool ContourHasSelfIntersection(const contour_of_points &c);\n 17\tbool ContourCollectionsHaveIntersections(const contour_collection &cc);\n 18\tbool ContourCollectionIsSimpleNested(const contour_collection &cc);\n 19\t\n 20\tdouble EstimateEquivalentSquareForContours(\n 21\t const contour_collection &cc,\n 22\t EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation);\n 23\t\n 24\tOperationDoc OpArgDocEstimateEquivalentSquare();\n 25\t\n 26\tbool EstimateEquivalentSquare(Drover &DICOM_data,\n 27\t const OperationArgPkg& /*OptArgs*/,\n 28\t std::map& /*InvocationMetadata*/,\n 29\t const std::string& /*FilenameLex*/);\n 30\tnamespace {\n 31\tconstexpr double contour_eps = 1.0e-8;\n 32\t\n 33\tstruct point2 {\n 34\t double x = 0.0;\n 35\t double y = 0.0;\n 36\t};\n 37\t\n 38\tstd::vector contour_points_2d(const contour_of_points &c){\n 39\t std::vector out;\n 40\t out.reserve(c.points.size());\n 41\t for(const auto &p : c.points) out.push_back({p.x, p.y});\n 42\t return out;\n 43\t}\n 44\t\n 45\tdouble orient(const point2 &a, const point2 &b, const point2 &c){\n 46\t return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n 47\t}\n 48\t\n 49\t\n 50\tbool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n 51\t if(std::abs(orient(a, b, p)) > contour_eps) return false;\n 52\t return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n 53\t && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n 54\t}\n 55\t\n 56\tbool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n 57\t const auto o1 = orient(a, b, c);\n 58\t const auto o2 = orient(a, b, d);\n 59\t const auto o3 = orient(c, d, a);\n 60\t const auto o4 = orient(c, d, b);\n 61\t if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n 62\t && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n 63\t return true;\n 64\t }\n 65\t return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n 66\t || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n 67\t}\n 68\t\n 69\tbool point_in_contour(const point2 &p, const contour_of_points &c){\n 70\t const auto pts = contour_points_2d(c);\n 71\t bool inside = false;\n 72\t for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n 73\t if(point_on_segment(p, pts[j], pts[i])) return true;\n 74\t const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\n 75\t && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n 76\t if(crosses) inside = !inside;\n 77\t }\n 78\t return inside;\n 79\t}\n 80\t}\n 81\t\n 82\tbool ContourHasSelfIntersection(const contour_of_points &c){\n 83\t const auto pts = contour_points_2d(c);\n 84\t if(pts.size() < 3U) return true;\n 85\t for(size_t i = 0U; i < pts.size(); ++i){\n 86\t const auto in = (i + 1U) % pts.size();\n 87\t for(size_t j = i + 1U; j < pts.size(); ++j){\n 88\t const auto jn = (j + 1U) % pts.size();\n 89\t const bool adjacent = (i == j) || (in == j) || (jn == i);\n 90\t if(adjacent) continue;\n 91\t if(segments_intersect_or_touch(pts[i], pts[in], pts[j], pts[jn])) return true;\n 92\t }\n 93\t }\n 94\t return false;\n 95\t}\n 96\t\n 97\tbool ContourCollectionsHaveIntersections(const contour_collection &cc){\n 98\t for(auto a_it = cc.contours.begin(); a_it != cc.contours.end(); ++a_it){\n 99\t const auto a_pts = contour_points_2d(*a_it);\n 100\t auto b_it = a_it;\n 101\t for(++b_it; b_it != cc.contours.end(); ++b_it){\n 102\t const auto b_pts = contour_points_2d(*b_it);\n 103\t for(size_t i = 0U; i < a_pts.size(); ++i){\n 104\t const auto in = (i + 1U) % a_pts.size();\n 105\t for(size_t j = 0U; j < b_pts.size(); ++j){\n 106\t const auto jn = (j + 1U) % b_pts.size();\n 107\t if(segments_intersect_or_touch(a_pts[i], a_pts[in], b_pts[j], b_pts[jn])) return true;\n 108\t }\n 109\t }\n 110\t }\n 111\t }\n 112\t return false;\n 113\t}\n 114\t\n 115\tbool ContourCollectionIsSimpleNested(const contour_collection &cc){\n 116\t for(const auto &c : cc.contours){\n 117\t if(!c.closed || (c.points.size() < 3U) || ContourHasSelfIntersection(c)) return false;\n 118\t }\n 119\t return !ContourCollectionsHaveIntersections(cc);\n 120\t}\n 121\t\n 122\tdouble EstimateEquivalentSquareForContours(const contour_collection &cc,\n 123\t const EquivalentSquareHoleDetection hole_detection){\n 124\t if(!ContourCollectionIsSimpleNested(cc)){\n 125\t throw std::invalid_argument(\"Non-simple contour arrangement encountered; contours must be closed, non-self-intersecting, and non-intersecting\");\n 126\t }\n 127\t\n 128\t double area = 0.0;\n 129\t double perimeter = 0.0;\n 130\t\n 131\t for(auto c_it = cc.contours.begin(); c_it != cc.contours.end(); ++c_it){\n 132\t const auto signed_area = c_it->Get_Signed_Area(true);\n 133\t const auto abs_area = std::abs(signed_area);\n 134\t const auto c_perimeter = c_it->Perimeter();\n 135\t if(!std::isfinite(signed_area) || !std::isfinite(c_perimeter)){\n 136\t throw std::invalid_argument(\"Encountered non-finite contour area or perimeter\");\n 137\t }\n 138\t if(abs_area <= 0.0 || c_perimeter <= 0.0){\n 139\t throw std::invalid_argument(\"Encountered degenerate contour with non-positive area or perimeter\");\n 140\t }\n 141\t\n 142\t if(hole_detection == EquivalentSquareHoleDetection::SignedContourOrientation){\n 143\t area += signed_area;\n 144\t }else{\n 145\t size_t containing_contours = 0U;\n 146\t const auto probe = contour_points_2d(*c_it).front();\n 147\t for(auto other_it = cc.contours.begin(); other_it != cc.contours.end(); ++other_it){\n 148\t if(other_it == c_it) continue;\n 149\t if(point_in_contour(probe, *other_it)) ++containing_contours;\n 150\t }\n 151\t area += ((containing_contours % 2U) == 0U) ? abs_area : -abs_area;\n 152\t }\n 153\t perimeter += c_perimeter;\n 154\t }\n 155\t\n 156\t area = std::abs(area);\n 157\t if(area <= 0.0 || perimeter <= 0.0){\n 158\t throw std::invalid_argument(\"No valid contour aperture was available\");\n 159\t }\n 160\t\n 161\t return 4.0 * area / perimeter;\n 162\t}\n 163\t\n 164\tOperationDoc OpArgDocEstimateEquivalentSquare(){\n 165\t OperationDoc out;\n 166\t out.name = \"EstimateEquivalentSquare\";\n 167\t\n 168\t out.tags.emplace_back(\"category: contour processing\");\n 169\t out.tags.emplace_back(\"category: parameter table\");\n 170\t out.tags.emplace_back(\"category: radiotherapy treatment planning\");\n 171\t\n 172\t out.desc =\n 173\t \"Estimate the Sterling equivalent square for an ROI containing one or more closed planar contours.\"\n 174\t \" The selected contours are interpreted as radiotherapy field apertures in millimetres, and the\"\n 175\t \" equivalent square is computed as 4*A/P, where A is the total aperture area and P is the total\"\n 176\t \" aperture perimeter. The result has scale units of millimetres and is stored in the global parameter table.\";\n 177\t\n 178\t out.args.emplace_back();\n 179\t out.args.back() = NCWhitelistOpArgDoc();\n 180\t out.args.back().name = \"NormalizedROILabelRegex\";\n 190\t out.args.back().name = \"ROISelection\";\n 191\t out.args.back().default_val = \"all\";\n 192\t\n 193\t out.args.emplace_back();\n 194\t out.args.back().name = \"ParameterKey\";\n 195\t out.args.back().desc = \"The key under which the equivalent square will be stored in the global parameter table.\";\n 196\t out.args.back().default_val = \"EquivalentSquare_mm\";\n 197\t out.args.back().expected = true;\n 198\t out.args.back().examples = { \"FieldEquivalentSquare\", \"eqsq_mm\" };\n 199\t\n 200\t out.args.emplace_back();\n 201\t out.args.back().name = \"HoleDetection\";\n 202\t out.args.back().desc = \"Controls how nested contours are interpreted as holes, islands, and islands with holes.\"\n 203\t \" 'signed' uses contour signedness/orientation. 'overlap' ignores orientation and alternates\"\n 204\t \" aperture/hole status by nesting depth (even-odd-even-odd). Non-simple arrangements,\"\n 205\t \" including self-intersections, contour intersections, and T-intersections, are rejected.\";\n 206\t out.args.back().default_val = \"signed\";\n 207\t out.args.back().expected = true;\n 208\t out.args.back().examples = { \"signed\", \"overlap\" };\n 209\t\n 210\t return out;\n 211\t}\n 212\t\n 213\tbool EstimateEquivalentSquare(Drover& DICOM_data,\n 214\t const OperationArgPkg& OptArgs,\n 215\t std::map& InvocationMetadata,\n 216\t const std::string& /*FilenameLex*/){\n 217\t\n 218\t //---------------------------------------------- User Parameters --------------------------------------------------\n 219\t const auto NormalizedROILabelRegex = OptArgs.getValueStr(\"NormalizedROILabelRegex\").value();\n 220\t const auto ROILabelRegex = OptArgs.getValueStr(\"ROILabelRegex\").value();\n 221\t const auto ROISelection = OptArgs.getValueStr(\"ROISelection\").value();\n 222\t const auto ParameterKey = OptArgs.getValueStr(\"ParameterKey\").value();\n 223\t const auto HoleDetectionStr = OptArgs.getValueStr(\"HoleDetection\").value();\n 224\t\n 225\t //-----------------------------------------------------------------------------------------------------------------\n 226\t if(ParameterKey.empty()){\n 227\t throw std::invalid_argument(\"ParameterKey must not be empty\");\n 228\t }\n 229\t\n 230\t auto cc_all = All_CCs( DICOM_data );\n 231\t auto cc_ROIs = Whitelist( cc_all, ROILabelRegex, NormalizedROILabelRegex, ROISelection );\n 232\t if(cc_ROIs.empty()){\n 233\t throw std::invalid_argument(\"No contours selected. Cannot continue.\");\n 234\t }\n 235\t\n 236\t if(cc_ROIs.size() != 1UL){\n 237\t throw std::invalid_argument(\"Exactly one ROI must be selected for equivalent square estimation\");\n 238\t }\n 239\t\n 240\t const std::regex signed_regex(\"signed|orientation|contour_signedness\");\n 241\t const std::regex overlap_regex(\"overlap|simple_overlap|even_odd|evenodd\");\n 242\t EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n 243\t if(std::regex_match(HoleDetectionStr, signed_regex)){\n 244\t hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n 245\t }else if(std::regex_match(HoleDetectionStr, overlap_regex)){\n 246\t hole_detection = EquivalentSquareHoleDetection::SimpleOverlap;\n 247\t }else{\n 248\t throw std::invalid_argument(\"HoleDetection must be 'signed' or 'overlap'\");\n 249\t }\n 250\t\n 251\t try{\n 252\t const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get(), hole_detection);\n 253\t\n 254\t std::ostringstream ss;\n 255\t ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n 256\t InvocationMetadata[ParameterKey] = ss.str();\n 257\t\n 258\t YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n 259\t return true;\n 260\t }catch(const std::invalid_argument &e){\n 261\t YLOGWARN(\"Unable to estimate equivalent square: \" << e.what());\n 262\t return false;\n 263\t }\n 264\t}\n 265\t\n 266\tnamespace {\n 267\tcontour_of_points make_rectangle(const double width,\n 268\t const double height,\n 269\t const double x_offset = 0.0,\n 270\t const double y_offset = 0.0,\n 271\t const bool clockwise = false){\n 272\t std::list> points{\n 273\t vec3(x_offset, y_offset, 0.0),\n 274\t vec3(x_offset + width, y_offset, 0.0),\n 275\t vec3(x_offset + width, y_offset + height, 0.0),\n 276\t vec3(x_offset, y_offset + height, 0.0)\n 277\t };\n 278\t if(clockwise) points.reverse();\n 279\t contour_of_points c(points);\n 280\t c.closed = true;\n 281\t return c;\n 282\t}\n 283\t\n 284\tcontour_of_points make_bowtie(){\n 285\t contour_of_points c(std::list>{\n 286\t vec3(0.0, 0.0, 0.0),\n 287\t vec3(10.0, 10.0, 0.0),\n 288\t vec3(0.0, 10.0, 0.0),\n 289\t vec3(10.0, 0.0, 0.0)\n 290\t });\n 291\t c.closed = true;\n 292\t return c;\n 293\t}\n 294\t\n 295\tcontour_collection make_collection(std::list> contours){\n 296\t contour_collection cc;\n 297\t cc.contours = std::move(contours);\n 298\t return cc;\n 299\t}\n 300\t}\n 301\t\n 302\tTEST_CASE(\"EstimateEquivalentSquareForContours handles square apertures\"){\n 303\t const auto cc = make_collection({ make_rectangle(10.0, 10.0) });\n 304\t CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(10.0));\n 305\t}\n 306\t\n 307\tTEST_CASE(\"EstimateEquivalentSquareForContours handles rectangular apertures\"){\n 308\t const auto cc = make_collection({ make_rectangle(10.0, 20.0) });\n 309\t CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(40.0 / 3.0));\n 310\t}\n 311\t\n 312\tTEST_CASE(\"EstimateEquivalentSquareForContours handles multiple apertures\"){\n 313\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 20.0) });\n 314\t CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(25.0 / 3.0));\n 315\t}\n 316\t\n 317\t\n 318\tTEST_CASE(\"EstimateEquivalentSquareForContours handles signed holes\"){\n 319\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5, true) });\n 320\t CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SignedContourOrientation) == doctest::Approx(5.0));\n 321\t}\n 322\t\n 323\tTEST_CASE(\"EstimateEquivalentSquareForContours handles simple-overlap holes\"){\n 324\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5) });\n 325\t CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SimpleOverlap) == doctest::Approx(5.0));\n 326\t}\n 327\t\n 328\tTEST_CASE(\"ContourHasSelfIntersection rejects bowtie contours\"){\n 329\t CHECK(ContourHasSelfIntersection(make_bowtie()));\n 330\t CHECK_THROWS_AS(EstimateEquivalentSquareForContours(make_collection({ make_bowtie() })), std::invalid_argument);\n 331\t}\n 332\t\n 333\tTEST_CASE(\"ContourCollectionsHaveIntersections rejects crossing contours\"){\n 334\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(10.0, 10.0, 5.0, 5.0) });\n 335\t CHECK(ContourCollectionsHaveIntersections(cc));\n 336\t CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n 337\t}\n 338\t\n 339\tTEST_CASE(\"ContourCollectionsHaveIntersections rejects T-intersections\"){\n 340\t const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 5.0, 2.5) });\n 341\t CHECK(ContourCollectionsHaveIntersections(cc));\n 342\t CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n 343\t}\n?? py/poetry.lock\n","command","/bin/bash -lc \"nl -ba src/Operations/EstimateEquivalentSquare.h | sed -n '1,80p'; nl -ba src/Operations/EstimateEquivalentSquare.cc | sed -n '30,180p'; nl -ba src/Operations/EstimateEquivalentSquare.cc | sed -n '190,370p'; git status --short\"","commandActions",[496],"cwd","/workspace/DICOMautomaton","exitCode","processId","82971","source","unifiedExecStartup","commandExecution",{"_484":497,"_93":498},"nl -ba src/Operations/EstimateEquivalentSquare.h | sed -n '1,80p'; nl -ba src/Operations/EstimateEquivalentSquare.cc | sed -n '30,180p'; nl -ba src/Operations/EstimateEquivalentSquare.cc | sed -n '190,370p'; git status --short","unknown",{"_440":500,"_421":422,"_442":428},{"_501":502,"_475":476,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"arguments","{\"cmd\":\"nl -ba src/Operations/EstimateEquivalentSquare.h | sed -n '1,80p'; nl -ba src/Operations/EstimateEquivalentSquare.cc | sed -n '30,180p'; nl -ba src/Operations/EstimateEquivalentSquare.cc | sed -n '190,370p'; git status --short\"}","exec_command","namespace","function_call",{"_440":507,"_421":422,"_442":428},{"_443":-5,"_460":508,"_42":-5,"_446":-5,"_462":509,"_93":464},"gAAAAABqMyKG0VKsaMOtF6Knc1PcWvVr30w7UEDNKZC3QUFrzoBrCw-TXBEXBdarJvxEpcDoDhoG2uMaRElq6Arn-jrSVG4cb82gFovPqCH_yZtZa0cUeTG1EQETv-PL5H1J22v8PmgXXGwgFA_UID3fUZIsqO6u3SlQLwi5Eg8h8wB8QMgRqqrZoXoOIFPex9QnFJGxXhcsxc5nsRqX-RRizdZPTNM__Y-vcrQ3A56qaY3C_NStAJHfNFR_DhTauragtQl-l12dacIAXFZX7g66Egp5pQa0nYlE-y4FtzdmYn2zQlSSanosW05Eb-SEwXaRvKdPPAYZYnUWMOJ87seePuxqaoOBbm178Z3R8lXA1RPEDvA8Rm6HvPGUOIkA84Ryku1_iLd6pvhyCttj4mNETpG157R__06SsZJ6eqZFKlM_zyNJgU5ElGM2bLf7skdSHnvZnEEnMf3wATZNtQdiIwrmflD6m3v2QVPOQRhQ1GBGaJYW6F8SS77t1u3o19MzqU4RjcaqrgwTb1spT6OMGcDnxloR1IYqidrwpswNn5pSJIxibfB5VQWkMJvRVe8yVeXf0gWbgN67-bN4m0UASZls7slIx--fG4LUkvKa9lCEHtXiUFJ4Z0qa8ZvP8R9K7qJUAOIEqjyc7YfsNXmWcXt5lE4r_mxiAgLJFcGD-49PxcWIhgnoTCcU7HHK8hRk3GCWhjyrmcstqsuXtyQgnqaSHIBwxRgoYTC9b4_msCgZEcQzUirKJbB8aXlb58oTfb2LtGxNT_xfODTwKBTmat8dl4e6YwL8JdenbIoZXwFo9f8L97qg5XHEae2kCes6i5rfTTQIT9HOHLfcOivxX3CnXQXvTuwhd9W6N9owptG5tuHAFyLQdVIiFn6En93vVtEHiGtuFiAVoQzdZ5o5f-BC-TDEyLjS8kUhpdtOv8_kgEBo4prPptiGvDPj3BZQPCEyI-_6EGmAM1eOU22PjrK7CxyISA==",[],{"_440":511,"_421":422,"_442":428},{"_443":512,"_42":513,"_462":514,"_93":464},[],"rs_0db9a5c18f3fd3b6016a332285f064819a896562b64658efb5",[],{"_440":516,"_421":422,"_442":428},{"_475":517,"_446":-5,"_477":518,"_93":479},"call_JQI6gddcUujeZv8U5hwFh00f","Wall time: 0.0097 seconds\nOutput:\n{\"title\":\"Handle nested contours in equivalent square\",\"body\":\"### Summary\\n- Added a `HoleDetection` operation argument so equivalent-square estimation can interpret nested contours either by signed contour orientation or by simple even/odd overlap depth.\\n- Added reusable free functions for simple-contour validation, including self-intersection, inter-contour crossing, and T-intersection rejection.\\n- Updated equivalent-square area accumulation to use net signed/boolean aperture area while preserving all boundary perimeter contributions.\\n- Added doctest coverage for signed holes, simple-overlap holes, self-intersections, crossing contours, and T-intersections.\\n\\n### Testing\\n- `git diff --check`\\n- `cmake -S . -B /tmp/dicomautomaton-build -DWITH_WT=OFF -DWITH_GNU_GSL=OFF -DWITH_THRIFT=OFF -DWITH_DCMTK=OFF -DWITH_POSTGRES=OFF -DWITH_OPENSSL=OFF` *(fails: required Ygor dependency not found/could not be fetched in this environment)*\"}",{"_440":520,"_421":422,"_442":428},{"_521":-5,"_501":522,"_426":523,"_104":-5,"_42":517,"_524":-5,"_525":-5,"_526":527,"_528":529,"_433":114,"_530":529,"_93":531},"appContext",{"_305":536,"_307":537},9,"mcpAppResourceUri","pluginId","result",{"_532":-5,"_443":533,"_534":535},"server","make_pr","tool","mcpToolCall","_meta",[538],"structuredContent",{"_305":536,"_307":537},"Handle nested contours in equivalent square","### Summary\n- Added a `HoleDetection` operation argument so equivalent-square estimation can interpret nested contours either by signed contour orientation or by simple even/odd overlap depth.\n- Added reusable free functions for simple-contour validation, including self-intersection, inter-contour crossing, and T-intersection rejection.\n- Updated equivalent-square area accumulation to use net signed/boolean aperture area while preserving all boundary perimeter contributions.\n- Added doctest coverage for signed holes, simple-overlap holes, self-intersections, crossing contours, and T-intersections.\n\n### Testing\n- `git diff --check`\n- `cmake -S . -B /tmp/dicomautomaton-build -DWITH_WT=OFF -DWITH_GNU_GSL=OFF -DWITH_THRIFT=OFF -DWITH_DCMTK=OFF -DWITH_POSTGRES=OFF -DWITH_OPENSSL=OFF` *(fails: required Ygor dependency not found/could not be fetched in this environment)*",{"_93":46,"_46":539},"{\n \"title\": \"Handle nested contours in equivalent square\",\n \"body\": \"### Summary\\n- Added a `HoleDetection` operation argument so equivalent-square estimation can interpret nested contours either by signed contour orientation or by simple even/odd overlap depth.\\n- Added reusable free functions for simple-contour validation, including self-intersection, inter-contour crossing, and T-intersection rejection.\\n- Updated equivalent-square area accumulation to use net signed/boolean aperture area while preserving all boundary perimeter contributions.\\n- Added doctest coverage for signed holes, simple-overlap holes, self-intersections, crossing contours, and T-intersections.\\n\\n### Testing\\n- `git diff --check`\\n- `cmake -S . -B /tmp/dicomautomaton-build -DWITH_WT=OFF -DWITH_GNU_GSL=OFF -DWITH_THRIFT=OFF -DWITH_DCMTK=OFF -DWITH_POSTGRES=OFF -DWITH_OPENSSL=OFF` *(fails: required Ygor dependency not found/could not be fetched in this environment)*\"\n}",{"_440":541,"_421":422,"_442":428},{"_501":542,"_475":517,"_42":-5,"_446":-5,"_194":529,"_504":543,"_93":505},"{\"title\":\"Handle nested contours in equivalent square\",\"body\":\"### Summary\\n- Added a `HoleDetection` operation argument so equivalent-square estimation can interpret nested contours either by signed contour orientation or by simple even/odd overlap depth.\\n- Added reusable free functions for simple-contour validation, including self-intersection, inter-contour crossing, and T-intersection rejection.\\n- Updated equivalent-square area accumulation to use net signed/boolean aperture area while preserving all boundary perimeter contributions.\\n- Added doctest coverage for signed holes, simple-overlap holes, self-intersections, crossing contours, and T-intersections.\\n\\n### Testing\\n- `git diff --check`\\n- `cmake -S . -B /tmp/dicomautomaton-build -DWITH_WT=OFF -DWITH_GNU_GSL=OFF -DWITH_THRIFT=OFF -DWITH_DCMTK=OFF -DWITH_POSTGRES=OFF -DWITH_OPENSSL=OFF` *(fails: required Ygor dependency not found/could not be fetched in this environment)*\"}","mcp__make_pr__",{"_440":545,"_421":422,"_442":428},{"_475":546,"_446":-5,"_477":547,"_93":479},"call_W4sx7bPANE3c8IC2JC1pcMu9","Chunk ID: fc7349\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 28\nOutput:\n[work f54e5ca] Handle nested contours in equivalent square\n 2 files changed, 214 insertions(+), 23 deletions(-)\n",{"_440":549,"_421":422,"_442":428},{"_482":550,"_484":551,"_486":552,"_488":489,"_426":32,"_490":32,"_42":546,"_491":553,"_493":494,"_433":114,"_93":495},"[work f54e5ca] Handle nested contours in equivalent square\n 2 files changed, 214 insertions(+), 23 deletions(-)\n","/bin/bash -lc 'git add src/Operations/EstimateEquivalentSquare.cc src/Operations/EstimateEquivalentSquare.h && git commit -m \"Handle nested contours in equivalent square\"'",[554],"9746",{"_484":555,"_93":498},"git add src/Operations/EstimateEquivalentSquare.cc src/Operations/EstimateEquivalentSquare.h && git commit -m \"Handle nested contours in equivalent square\"",{"_440":557,"_421":422,"_442":428},{"_501":558,"_475":546,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"git add src/Operations/EstimateEquivalentSquare.cc src/Operations/EstimateEquivalentSquare.h && git commit -m \\\"Handle nested contours in equivalent square\\\"\",\"yield_time_ms\":1000,\"max_output_tokens\":2000}",{"_440":560,"_421":422,"_442":428},{"_443":-5,"_460":561,"_42":-5,"_446":-5,"_462":562,"_93":464},"gAAAAABqMyJ-5rtHpsmcCmlRC_ELR7FmEX2RCqb-cOvTggwmFrMLBv73BPEHHjCK3Jfdxp8nq95fbYdVqMWXC_QKFHKCEz7Z6JEka3oBvBEun4Bd20qTdHZ8ZVexjrFTkDil1rTvq_2N2uWWKRx2eq5X_Qkbe5SqqeSIGxvkSnRze1OAofxBA4VoThxRULWUg7JM-njCS9MtOeea0u5pLcIPkGvg0DHLlwwzbMzf3qnrFaUNTmSoY-RL2ETbczpWTl0A_--YWG_BZSk1R6VUq2cH39gkuYDTVa6_lfbbks4SqvbDua9VfzrEMBsHB9VX2qKkY512WqZEbd_Qq5IT4ZRNhcMRiTFd1cfirObdtN7NdLFNhX_XwFmetMeDbN4NetX_SoItS0fKFaPhGT62poizen9pG-rzPicsP0VripdHF_SAjCznrnKw4IU3JRkQ3jB22NDVCRZKpi96Ya8ZqCXie3tkgKVAdZkQEd1uFdqFxbrcTPfXf_EagChzglZMbC1RGWT_yFWWMefZoaUjuzzf4Q6phithHHBdUYTuM8NEatzUzNFpGJA6FL9cChmJhqNohtZUZcHwL85NRtayoh7dttcb-t-GAezJ2-nUwJTvx1-laRseAWysseImoVw3TPyGwgOICaBOhmJGB9J9knjGJ2rpkkh-w34s4Cjdx93VxTMBEb__4X1Pm4y5In2aWL5iJr2ikHT3K7d2Aihnf4pty7lSRuw5Dl8_zyddg1r0v0tn9U3YrEzLBR-TuZiJ2A4E3GqiYrN_i8lOfRchNh9nPl3IXOMcwSaPt2p_TOvVEEthJneYG_fCjUshq2Ue41k7oBSB2g3M9lc52MsA77Dq-qX9qts8k2mA03jqS-fkmvqAzhhOzZvtmpMaOnJ-OT1moh45F6GWVgLrSCcmJf-58mRy2D97TfCB_ofzbcvzPlxoqRKqVqfZAxiOQEgYwtcgb4rwqygAF4mvqphfN9QmXTy5QBwjAg==",[],{"_440":564,"_421":422,"_442":428},{"_443":565,"_42":566,"_462":567,"_93":464},[],"rs_0db9a5c18f3fd3b6016a33227e5874819abe63d5d4c99e4f36",[],{"_440":569,"_421":422,"_442":428},{"_475":570,"_446":-5,"_477":571,"_93":479},"call_zlhLYTTEWHrObiitzcDT9cwj","Chunk ID: e4dc8f\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 741\nOutput:\n M src/Operations/EstimateEquivalentSquare.cc\n M src/Operations/EstimateEquivalentSquare.h\n?? py/poetry.lock\ndiff --git a/src/Operations/EstimateEquivalentSquare.cc b/src/Operations/EstimateEquivalentSquare.cc\nindex 316b7ab..cbee3ca 100644\n--- a/src/Operations/EstimateEquivalentSquare.cc\n+++ b/src/Operations/EstimateEquivalentSquare.cc\n@@ -3,13 +3,16 @@\n #include \n #include \n #include \n+#include \n #include \n #include \n #include \n #include \n+#include \n #include \n #include \n #include //Needed for std::move.\n+#include \n \n #include \"YgorMath.h\"\n #include \"YgorMisc.h\"\n@@ -23,28 +26,134 @@\n #include \"../doctest20251212/doctest.h\"\n \n \n-double EstimateEquivalentSquareForContours(const contour_collection &cc){\n- double area = 0.0;\n- double perimeter = 0.0;\n \n- for(const auto &c : cc.contours){\n- if(!c.closed){\n- throw std::invalid_argument(\"All contours must be closed\");\n+namespace {\n+constexpr double contour_eps = 1.0e-8;\n+\n+struct point2 {\n+ double x = 0.0;\n+ double y = 0.0;\n+};\n+\n+std::vector contour_points_2d(const contour_of_points &c){\n+ std::vector out;\n+ out.reserve(c.points.size());\n+ for(const auto &p : c.points) out.push_back({p.x, p.y});\n+ return out;\n+}\n+\n+double orient(const point2 &a, const point2 &b, const point2 &c){\n+ return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n+}\n+\n+\n+bool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n+ if(std::abs(orient(a, b, p)) > contour_eps) return false;\n+ return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n+ && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n+}\n+\n+bool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n+ const auto o1 = orient(a, b, c);\n+ const auto o2 = orient(a, b, d);\n+ const auto o3 = orient(c, d, a);\n+ const auto o4 = orient(c, d, b);\n+ if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n+ && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n+ return true;\n+ }\n+ return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n+ || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n+}\n+\n+bool point_in_contour(const point2 &p, const contour_of_points &c){\n+ const auto pts = contour_points_2d(c);\n+ bool inside = false;\n+ for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n+ if(point_on_segment(p, pts[j], pts[i])) return true;\n+ const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\n+ && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n+ if(crosses) inside = !inside;\n+ }\n",{"_440":573,"_421":422,"_442":428},{"_482":574,"_484":575,"_486":576,"_488":489,"_426":32,"_490":32,"_42":570,"_491":577,"_493":494,"_433":114,"_93":495}," M src/Operations/EstimateEquivalentSquare.cc\n M src/Operations/EstimateEquivalentSquare.h\n?? py/poetry.lock\ndiff --git a/src/Operations/EstimateEquivalentSquare.cc b/src/Operations/EstimateEquivalentSquare.cc\nindex 316b7ab..cbee3ca 100644\n--- a/src/Operations/EstimateEquivalentSquare.cc\n+++ b/src/Operations/EstimateEquivalentSquare.cc\n@@ -3,13 +3,16 @@\n #include \n #include \n #include \n+#include \n #include \n #include \n #include \n #include \n+#include \n #include \n #include \n #include //Needed for std::move.\n+#include \n \n #include \"YgorMath.h\"\n #include \"YgorMisc.h\"\n@@ -23,28 +26,134 @@\n #include \"../doctest20251212/doctest.h\"\n \n \n-double EstimateEquivalentSquareForContours(const contour_collection &cc){\n- double area = 0.0;\n- double perimeter = 0.0;\n \n- for(const auto &c : cc.contours){\n- if(!c.closed){\n- throw std::invalid_argument(\"All contours must be closed\");\n+namespace {\n+constexpr double contour_eps = 1.0e-8;\n+\n+struct point2 {\n+ double x = 0.0;\n+ double y = 0.0;\n+};\n+\n+std::vector contour_points_2d(const contour_of_points &c){\n+ std::vector out;\n+ out.reserve(c.points.size());\n+ for(const auto &p : c.points) out.push_back({p.x, p.y});\n+ return out;\n+}\n+\n+double orient(const point2 &a, const point2 &b, const point2 &c){\n+ return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n+}\n+\n+\n+bool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n+ if(std::abs(orient(a, b, p)) > contour_eps) return false;\n+ return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n+ && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n+}\n+\n+bool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n+ const auto o1 = orient(a, b, c);\n+ const auto o2 = orient(a, b, d);\n+ const auto o3 = orient(c, d, a);\n+ const auto o4 = orient(c, d, b);\n+ if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n+ && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n+ return true;\n+ }\n+ return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n+ || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n+}\n+\n+bool point_in_contour(const point2 &p, const contour_of_points &c){\n+ const auto pts = contour_points_2d(c);\n+ bool inside = false;\n+ for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n+ if(point_on_segment(p, pts[j], pts[i])) return true;\n+ const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\n+ && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n+ if(crosses) inside = !inside;\n+ }\n","/bin/bash -lc \"git status --short && git diff -- src/Operations/EstimateEquivalentSquare.cc src/Operations/EstimateEquivalentSquare.h | sed -n '1,80p'\"",[578],"83823",{"_484":579,"_93":498},"git status --short && git diff -- src/Operations/EstimateEquivalentSquare.cc src/Operations/EstimateEquivalentSquare.h | sed -n '1,80p'",{"_440":581,"_421":422,"_442":428},{"_501":582,"_475":570,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"git status --short && git diff -- src/Operations/EstimateEquivalentSquare.cc src/Operations/EstimateEquivalentSquare.h | sed -n '1,80p'\"}",{"_440":584,"_421":422,"_442":428},{"_443":-5,"_460":585,"_42":-5,"_446":-5,"_462":586,"_93":464},"gAAAAABqMyJ87coyQx9pPbDBOxywzpZywsjm4Dgkfj1aLzM9697Hc7AWPgfe_9BLe9Uxn1835FXL6SqY6Pw18XcisgBex8EEIELcYKZwVtmFuMWr8OIgKwEVKbubLuqwSqnR9FHdOB8z4w8aF1RkVKqmYG1ODX8CTDHlaeS673txCUCTk_JLzNjIGqWCLCce-zAUJKSlY78NZd5XGooktKmBzxVF0w-8xeGtoWeuwW8tPByYUUc31rTevsRkdNy7zbywhz5WUFWUWchlQo9DKo40A5_eM6t-B90G6GIjjmARhs3Iwy7qmZFyY1eUZY1UHmj0i_qUCuDaiywYGPr5vuCE-ufglABsNIi91x4JP4xsnM1NoSXlLkEAStMQFVTojTxrvIPlnSoWdqd2l4Gwlr_Q_ClgbB9DH29axKCG-TSfLkbl2GQ2yjIYfdsZ8CoW48E4OVUgE3zmpx_Hhy9uOdOV447BmvDdAdwX8i47hR1dtcM9d9J4ci2JAO1clAgkQmZLiCsTmkj10cv4hryeGt_E0RKWJZQL9E1I97zLp344Ls7WhU2LJyL44DSJ_z0iYYfMYNAa_TXUKvpNRp4a0Kjy58m8HwA_5twYG-PKKClXBNAdO9wpD30zTd6y1DGvhC55yAn97ftmjF7cqy8KG6H8bkYVLlcMpGY1G02Fkly03SK2On1dsBOrTI7pGQgM52ApLRlWPtuCbSGw7dNs-D184WBfNcCXEOXEwoIGfW5MbFY9h662HdHg_HZ53x5aipS8CtqmPfPrwJsyQvmAP2TwOlz-3gqHfhiNTw_TAB-Zjdx2FFMoeIEAfdAH_HMLVk06-6DBj06xh5rDvpGprITePz12Np-UI9YrT7Uw4dQrZ4P0YmjNPScmb64_TinCKT1jOgfp7fWEyoU4IPLufUQZ352tM1_vvE3BZ_Z1n0ScxNh3kuvG0jXePrsmUd2NGSNz5S8ANwK0mLkAk9Pv4Y-WWz5AeijMqw==",[],{"_440":588,"_421":422,"_442":428},{"_443":589,"_42":590,"_462":591,"_93":464},[],"rs_0db9a5c18f3fd3b6016a33227c2fdc819a9cdf1e381f0904fb",[],{"_440":593,"_421":422,"_442":428},{"_482":594,"_484":595,"_486":596,"_488":489,"_426":597,"_490":321,"_42":598,"_491":599,"_493":494,"_433":600,"_93":495},"-- The CXX compiler identification is GNU 13.3.0\n-- Detecting CXX compiler ABI info\n-- Detecting CXX compiler ABI info - done\n-- Check for working CXX compiler: /usr/bin/c++ - skipped\n-- Detecting CXX compile features\n-- Detecting CXX compile features - done\nCMake Warning at cmake/UpstreamAuthorDeps.cmake:22 (message):\n Ygor not found via find_package\nCall Stack (most recent call first):\n cmake/UpstreamAuthorDeps.cmake:71 (_dcma_find_or_fetch)\n CMakeLists.txt:105 (include)\n\n\nCMake Error at cmake/UpstreamAuthorDeps.cmake:64 (message):\n Ygor not found and could not be fetched.\nCall Stack (most recent call first):\n cmake/UpstreamAuthorDeps.cmake:71 (_dcma_find_or_fetch)\n CMakeLists.txt:105 (include)\n\n\n-- Configuring incomplete, errors occurred!\n","/bin/bash -lc 'cmake -S . -B /tmp/dicomautomaton-build -DWITH_WT=OFF -DWITH_GNU_GSL=OFF -DWITH_THRIFT=OFF -DWITH_DCMTK=OFF -DWITH_POSTGRES=OFF -DWITH_OPENSSL=OFF'",[601],695,"call_BtvEZ75ARewHxIlKV4LYyfGM","24739","failed",{"_484":602,"_93":498},"cmake -S . -B /tmp/dicomautomaton-build -DWITH_WT=OFF -DWITH_GNU_GSL=OFF -DWITH_THRIFT=OFF -DWITH_DCMTK=OFF -DWITH_POSTGRES=OFF -DWITH_OPENSSL=OFF",{"_440":604,"_421":422,"_442":428},{"_475":598,"_446":-5,"_477":605,"_93":479},"Chunk ID: ac06cf\nWall time: 0.5946 seconds\nProcess exited with code 1\nOriginal token count: 190\nOutput:\n-- The CXX compiler identification is GNU 13.3.0\n-- Detecting CXX compiler ABI info\n-- Detecting CXX compiler ABI info - done\n-- Check for working CXX compiler: /usr/bin/c++ - skipped\n-- Detecting CXX compile features\n-- Detecting CXX compile features - done\nCMake Warning at cmake/UpstreamAuthorDeps.cmake:22 (message):\n Ygor not found via find_package\nCall Stack (most recent call first):\n cmake/UpstreamAuthorDeps.cmake:71 (_dcma_find_or_fetch)\n CMakeLists.txt:105 (include)\n\n\nCMake Error at cmake/UpstreamAuthorDeps.cmake:64 (message):\n Ygor not found and could not be fetched.\nCall Stack (most recent call first):\n cmake/UpstreamAuthorDeps.cmake:71 (_dcma_find_or_fetch)\n CMakeLists.txt:105 (include)\n\n\n-- Configuring incomplete, errors occurred!\n",{"_440":607,"_421":422,"_442":428},{"_501":608,"_475":598,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"cmake -S . -B /tmp/dicomautomaton-build -DWITH_WT=OFF -DWITH_GNU_GSL=OFF -DWITH_THRIFT=OFF -DWITH_DCMTK=OFF -DWITH_POSTGRES=OFF -DWITH_OPENSSL=OFF\", \"yield_time_ms\": 1000, \"max_output_tokens\": 2000}",{"_440":610,"_421":422,"_442":428},{"_482":-5,"_484":611,"_486":612,"_488":489,"_426":613,"_490":32,"_42":614,"_491":615,"_493":494,"_433":114,"_93":495},"/bin/bash -lc \"python3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.cc')\ns=p.read_text()\ns=s.replace('''\nbool points_same(const point2 &a, const point2 &b){\n return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\n}\n''','\\\\n')\np.write_text(s)\nPY\ngit diff --check\"",[616],522,"call_MEJ8r6NZ0eIGR0fr124lwiKY","8446",{"_484":617,"_93":498},"python3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.cc')\ns=p.read_text()\ns=s.replace('''\nbool points_same(const point2 &a, const point2 &b){\n return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\n}\n''','\\n')\np.write_text(s)\nPY\ngit diff --check",{"_440":619,"_421":422,"_442":428},{"_475":614,"_446":-5,"_477":620,"_93":479},"Chunk ID: 557ff3\nWall time: 0.4217 seconds\nProcess exited with code 0\nOriginal token count: 0\nOutput:\n",{"_440":622,"_421":422,"_442":428},{"_501":623,"_475":614,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"python3 - <<'PY'\\nfrom pathlib import Path\\np=Path('src/Operations/EstimateEquivalentSquare.cc')\\ns=p.read_text()\\ns=s.replace('''\\nbool points_same(const point2 &a, const point2 &b){\\n return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\\n}\\n''','\\\\n')\\np.write_text(s)\\nPY\\ngit diff --check\"}",{"_440":625,"_421":422,"_442":428},{"_443":-5,"_460":626,"_42":-5,"_446":-5,"_462":627,"_93":464},"gAAAAABqMyJ1RxxkIaq1bqhkXcLJ2UZqdhrUzMrEOuUTdU5AoQd-7t84mQ5w2Qman-znUGv0ou-ANEAHk93z4tLH-FJ2KlOypABgwLQKlMi9r1sWeGpo0VBmRKcn1HE_ttKRCblDWJpIzzprLMM6DK-n6-h8zZ4MfS4BPWT0tVsPsFfbm9BGmtSm9f832Z-OvlY8bgAhGaZ5F5Osl2s1meWzvDc-7CxW79Fs6S6DXthMOM2WDQVyD3ntVXG53ddLUdUOJgfYXOG1DjA41wHnJkydJcq1yuEk0aUq-3ncdWGSrKNtjNhJg7t8ZcNX4kzYY5mpnByYfYZJ56K7JM1BtlWbVjd71pvT4MWL-we6O4k6rKPAUc5yP0c0xcdYtEo7PDsjXS-LPQSyc4wNUbbvrJWyaFNwBKSGO5XtxadWT0G9BFRfrMP4yHG91qMtJtKff9CQPtbVWjKoGFqE9eMFYsXIPZNfiwO24SE_QxDcNnuQYUMESdnVUquJTqPfZvaCA5RZP866zITpiczXIYVbYTau87cW7N7l7ieB82WM4BvmKtaA2ynMx2k_ExsDtdaNqpt4nJLz8GD2O8R8CnJCOYdggKrsBIDpg5kZdK9GrtqFoBt-HXk3DXJlggVepnFrPhgndVhKlIdagpOb4JFla2084PFNIOJEG_YZ-N7h4tE6ViOrh075Thxgo0BsmNqT30JLNQv_upaqtiMD1ddDSdCqodRB0Z32LhtrgqX5UK-E8F2Rwkp3bkIfo0LenuzfA2OboSIEmm2TZbW-aEYgGTXSd5rSW9RFA3OGhJpsn8GSw7XjI9iTSykKxZVAyYOn2Ky_TbCQg38D5M-shPyuaGcqu2O-X6CLUG-vZ9hE_8NtRyfDVnJKtv-gFZIBnOdsFVwZPBdPGmlRcFLFoma5MnmdxviS6-ceDsCOtkeZnnZ9xLALo3y4grlG0cxvkDd93xvg21cYAcRYUKAHXtcSenfEoJYVez16bzSNMl_1RglCU0YEDen9mGMn7odkrq9GLoISwyYqEhZvTUeQghPp3-ZjmVXtj0UXOB_2CBjJzNhOQqp8n_2LYpPdyloUZha7E132MKhIEcCc6MewYVPy_ZIhN0iu1VcIvXItxE78pDPvwkL09FCi_GMSf9y3q7H7cXQV602yaHFzUeNh3oTzO1c9T8nO-A10eDCd3ZKk1mAxMR_OG358U7Hnir8MCUvvmSzOPqIY9bVgT_XDBH_F22KvErRjXEn51ry9nHk-lIzFLjospv1H6aT61A1Mugld4GzgG8Yr19As9Towi8LfX444rLw71tjx02zDiZRkGErXJlM4dJ60WO1lxKOeKT65hIY6riCZyol9nlI1Cn-1WxYTtrS0mbsOjogydquAHGRiFnM6N8SPWxASoRq4ywH7pCefJPkf17xwzsEZF1R6yfp3d3gAq1KqCJgAssVsxZvNEH_JFtV7t7lqGJsYu4sAu89Q9D2LwRKA5BbqeniaYwp-BAzCO363utKsJr_k9kWtt1tH3DwHFhy5RlO1zhPdVrkn2CMSLT7ViBaoTou4e2cCbdLBP7NCHg==",[],{"_440":629,"_421":422,"_442":428},{"_443":630,"_42":631,"_462":632,"_93":464},[],"rs_0db9a5c18f3fd3b6016a332272b158819aa81d9df45baab5ad",[],{"_440":634,"_421":422,"_442":428},{"_475":635,"_446":-5,"_477":636,"_93":479},"call_HcH3LsWz027tSDWuEfnmc0eV","Chunk ID: 4603b7\nWall time: 0.0001 seconds\nProcess exited with code 0\nOriginal token count: 2642\nOutput:\ndiff --git a/src/Operations/EstimateEquivalentSquare.cc b/src/Operations/EstimateEquivalentSquare.cc\nindex 316b7ab..67d5cb6 100644\n--- a/src/Operations/EstimateEquivalentSquare.cc\n+++ b/src/Operations/EstimateEquivalentSquare.cc\n@@ -3,13 +3,16 @@\n #include \n #include \n #include \n+#include \n #include \n #include \n #include \n #include \n+#include \n #include \n #include \n #include //Needed for std::move.\n+#include \n \n #include \"YgorMath.h\"\n #include \"YgorMisc.h\"\n@@ -23,28 +26,137 @@\n #include \"../doctest20251212/doctest.h\"\n \n \n-double EstimateEquivalentSquareForContours(const contour_collection &cc){\n- double area = 0.0;\n- double perimeter = 0.0;\n \n- for(const auto &c : cc.contours){\n- if(!c.closed){\n- throw std::invalid_argument(\"All contours must be closed\");\n+namespace {\n+constexpr double contour_eps = 1.0e-8;\n+\n+struct point2 {\n+ double x = 0.0;\n+ double y = 0.0;\n+};\n+\n+std::vector contour_points_2d(const contour_of_points &c){\n+ std::vector out;\n+ out.reserve(c.points.size());\n+ for(const auto &p : c.points) out.push_back({p.x, p.y});\n+ return out;\n+}\n+\n+double orient(const point2 &a, const point2 &b, const point2 &c){\n+ return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n+}\n+\n+bool points_same(const point2 &a, const point2 &b){\n+ return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\n+}\n+\n+bool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n+ if(std::abs(orient(a, b, p)) > contour_eps) return false;\n+ return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n+ && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n+}\n+\n+bool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n+ const auto o1 = orient(a, b, c);\n+ const auto o2 = orient(a, b, d);\n+ const auto o3 = orient(c, d, a);\n+ const auto o4 = orient(c, d, b);\n+ if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n+ && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n+ return true;\n+ }\n+ return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n+ || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n+}\n+\n+bool point_in_contour(const point2 &p, const contour_of_points &c){\n+ const auto pts = contour_points_2d(c);\n+ bool inside = false;\n+ for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n+ if(point_on_segment(p, pts[j], pts[i])) return true;\n+ const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\n+ && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n+ if(crosses) inside = !inside;\n+ }\n+ return inside;\n+}\n+}\n+\n+bool ContourHasSelfIntersection(const contour_of_points &c){\n+ const auto pts = contour_points_2d(c);\n+ if(pts.size() < 3U) return true;\n+ for(size_t i = 0U; i < pts.size(); ++i){\n+ const auto in = (i + 1U) % pts.size();\n+ for(size_t j = i + 1U; j < pts.size(); ++j){\n+ const auto jn = (j + 1U) % pts.size();\n+ const bool adjacent = (i == j) || (in == j) || (jn == i);\n+ if(adjacent) continue;\n+ if(segments_intersect_or_touch(pts[i], pts[in], pts[j], pts[jn])) return true;\n }\n+ }\n+ return false;\n+}\n+\n+bool ContourCollectionsHaveIntersections(const contour_collection &cc){\n+ for(auto a_it = cc.contours.begin(); a_it != cc.contours.end(); ++a_it){\n+ const auto a_pts = contour_points_2d(*a_it);\n+ auto b_it = a_it;\n+ for(++b_it; b_it != cc.contours.end(); ++b_it){\n+ const auto b_pts = contour_points_2d(*b_it);\n+ for(size_t i = 0U; i < a_pts.size(); ++i){\n+ const auto in = (i + 1U) % a_pts.size();\n+ for(size_t j = 0U; j < b_pts.size(); ++j){\n+ const auto jn = (j + 1U) % b_pts.size();\n+ if(segments_intersect_or_touch(a_pts[i], a_pts[in], b_pts[j], b_pts[jn])) return true;\n+ }\n+ }\n+ }\n+ }\n+ return false;\n+}\n+\n+bool ContourCollectionIsSimpleNested(const contour_collection &cc){\n+ for(const auto &c : cc.contours){\n+ if(!c.closed || (c.points.size() < 3U) || ContourHasSelfIntersection(c)) return false;\n+ }\n+ return !ContourCollectionsHaveIntersections(cc);\n+}\n+\n+double EstimateEquivalentSquareForContours(const contour_collection &cc,\n+ const EquivalentSquareHoleDetection hole_detection){\n+ if(!ContourCollectionIsSimpleNested(cc)){\n+ throw std::invalid_argument(\"Non-simple contour arrangement encountered; contours must be closed, non-self-intersecting, and non-intersecting\");\n+ }\n+\n+ double area = 0.0;\n+ double perimeter = 0.0;\n \n- const auto c_area = std::abs(c.Get_Signed_Area(true));\n- const auto c_perimeter = c.Perimeter();\n- if(!std::isfinite(c_area) || !std::isfinite(c_perimeter)){\n+ for(auto c_it = cc.contours.begin(); c_it != cc.contours.end(); ++c_it){\n+ const auto signed_area = c_it->Get_Signed_Area(true);\n+ const auto abs_area = std::abs(signed_area);\n+ const auto c_perimeter = c_it->Perimeter();\n+ if(!std::isfinite(signed_area) || !std::isfinite(c_perimeter)){\n throw std::invalid_argument(\"Encountered non-finite contour area or perimeter\");\n }\n- if(c_area <= 0.0 || c_perimeter <= 0.0){\n+ if(abs_area <= 0.0 || c_perimeter <= 0.0){\n throw std::invalid_argument(\"Encountered degenerate contour with non-positive area or perimeter\");\n }\n \n- area += c_area;\n+ if(hole_detection == EquivalentSquareHoleDetection::SignedContourOrientation){\n+ area += signed_area;\n+ }else{\n+ size_t containing_contours = 0U;\n+ const auto probe = contour_points_2d(*c_it).front();\n+ for(auto other_it = cc.contours.begin(); other_it != cc.contours.end(); ++other_it){\n+ if(other_it == c_it) continue;\n+ if(point_in_contour(probe, *other_it)) ++containing_contours;\n+ }\n+ area += ((containing_contours % 2U) == 0U) ? abs_area : -abs_area;\n+ }\n perimeter += c_perimeter;\n }\n \n+ area = std::abs(area);\n if(area <= 0.0 || perimeter <= 0.0){\n throw std::invalid_argument(\"No valid contour aperture was available\");\n }\n@@ -88,6 +200,16 @@ OperationDoc OpArgDocEstimateEquivalentSquare(){\n out.args.back().expected = true;\n out.args.back().examples = { \"FieldEquivalentSquare\", \"eqsq_mm\" };\n \n+ out.args.emplace_back();\n+ out.args.back().name = \"HoleDetection\";\n+ out.args.back().desc = \"Controls how nested contours are interpreted as holes, islands, and islands with holes.\"\n+ \" 'signed' uses contour signedness/orientation. 'overlap' ignores orientation and alternates\"\n+ \" aperture/hole status by nesting depth (even-odd-even-odd). Non-simple arrangements,\"\n+ \" including self-intersections, contour intersections, and T-intersections, are rejected.\";\n+ out.args.back().default_val = \"signed\";\n+ out.args.back().expected = true;\n+ out.args.back().examples = { \"signed\", \"overlap\" };\n+\n return out;\n }\n \n@@ -101,6 +223,7 @@ bool EstimateEquivalentSquare(Drover& DICOM_data,\n const auto ROILabelRegex = OptArgs.getValueStr(\"ROILabelRegex\").value();\n const auto ROISelection = OptArgs.getValueStr(\"ROISelection\").value();\n const auto ParameterKey = OptArgs.getValueStr(\"ParameterKey\").value();\n+ const auto HoleDetectionStr = OptArgs.getValueStr(\"HoleDetection\").value();\n \n //-----------------------------------------------------------------------------------------------------------------\n if(ParameterKey.empty()){\n@@ -117,24 +240,56 @@ bool EstimateEquivalentSquare(Drover& DICOM_data,\n throw std::invalid_argument(\"Exactly one ROI must be selected for equivalent square estimation\");\n }\n \n- const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get());\n+ const std::regex signed_regex(\"signed|orientation|contour_signedness\");\n+ const std::regex overlap_regex(\"overlap|simple_overlap|even_odd|evenodd\");\n+ EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n+ if(std::regex_match(HoleDetectionStr, signed_regex)){\n+ hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n+ }else if(std::regex_match(HoleDetectionStr, overlap_regex)){\n+ hole_detection = EquivalentSquareHoleDetection::SimpleOverlap;\n+ }else{\n+ throw std::invalid_argument(\"HoleDetection must be 'signed' or 'overlap'\");\n+ }\n \n- std::ostringstream ss;\n- ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n- InvocationMetadata[ParameterKey] = ss.str();\n+ try{\n+ const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get(), hole_detection);\n \n- YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n+ std::ostringstream ss;\n+ ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n+ InvocationMetadata[ParameterKey] = ss.str();\n \n- return true;\n+ YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n+ return true;\n+ }catch(const std::invalid_argument &e){\n+ YLOGWARN(\"Unable to estimate equivalent square: \" << e.what());\n+ return false;\n+ }\n }\n \n namespace {\n-contour_of_points make_rectangle(const double width, const double height, const double x_offset = 0.0){\n+contour_of_points make_rectangle(const double width,\n+ const double height,\n+ const double x_offset = 0.0,\n+ const double y_offset = 0.0,\n+ const bool clockwise = false){\n+ std::list> points{\n+ vec3(x_offset, y_offset, 0.0),\n",{"_440":638,"_421":422,"_442":428},{"_482":639,"_484":640,"_486":641,"_488":489,"_426":32,"_490":32,"_42":635,"_491":642,"_493":494,"_433":114,"_93":495},"diff --git a/src/Operations/EstimateEquivalentSquare.cc b/src/Operations/EstimateEquivalentSquare.cc\nindex 316b7ab..67d5cb6 100644\n--- a/src/Operations/EstimateEquivalentSquare.cc\n+++ b/src/Operations/EstimateEquivalentSquare.cc\n@@ -3,13 +3,16 @@\n #include \n #include \n #include \n+#include \n #include \n #include \n #include \n #include \n+#include \n #include \n #include \n #include //Needed for std::move.\n+#include \n \n #include \"YgorMath.h\"\n #include \"YgorMisc.h\"\n@@ -23,28 +26,137 @@\n #include \"../doctest20251212/doctest.h\"\n \n \n-double EstimateEquivalentSquareForContours(const contour_collection &cc){\n- double area = 0.0;\n- double perimeter = 0.0;\n \n- for(const auto &c : cc.contours){\n- if(!c.closed){\n- throw std::invalid_argument(\"All contours must be closed\");\n+namespace {\n+constexpr double contour_eps = 1.0e-8;\n+\n+struct point2 {\n+ double x = 0.0;\n+ double y = 0.0;\n+};\n+\n+std::vector contour_points_2d(const contour_of_points &c){\n+ std::vector out;\n+ out.reserve(c.points.size());\n+ for(const auto &p : c.points) out.push_back({p.x, p.y});\n+ return out;\n+}\n+\n+double orient(const point2 &a, const point2 &b, const point2 &c){\n+ return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n+}\n+\n+bool points_same(const point2 &a, const point2 &b){\n+ return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\n+}\n+\n+bool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n+ if(std::abs(orient(a, b, p)) > contour_eps) return false;\n+ return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n+ && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n+}\n+\n+bool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n+ const auto o1 = orient(a, b, c);\n+ const auto o2 = orient(a, b, d);\n+ const auto o3 = orient(c, d, a);\n+ const auto o4 = orient(c, d, b);\n+ if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n+ && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n+ return true;\n+ }\n+ return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n+ || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n+}\n+\n+bool point_in_contour(const point2 &p, const contour_of_points &c){\n+ const auto pts = contour_points_2d(c);\n+ bool inside = false;\n+ for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n+ if(point_on_segment(p, pts[j], pts[i])) return true;\n+ const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\n+ && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n+ if(crosses) inside = !inside;\n+ }\n+ return inside;\n+}\n+}\n+\n+bool ContourHasSelfIntersection(const contour_of_points &c){\n+ const auto pts = contour_points_2d(c);\n+ if(pts.size() < 3U) return true;\n+ for(size_t i = 0U; i < pts.size(); ++i){\n+ const auto in = (i + 1U) % pts.size();\n+ for(size_t j = i + 1U; j < pts.size(); ++j){\n+ const auto jn = (j + 1U) % pts.size();\n+ const bool adjacent = (i == j) || (in == j) || (jn == i);\n+ if(adjacent) continue;\n+ if(segments_intersect_or_touch(pts[i], pts[in], pts[j], pts[jn])) return true;\n }\n+ }\n+ return false;\n+}\n+\n+bool ContourCollectionsHaveIntersections(const contour_collection &cc){\n+ for(auto a_it = cc.contours.begin(); a_it != cc.contours.end(); ++a_it){\n+ const auto a_pts = contour_points_2d(*a_it);\n+ auto b_it = a_it;\n+ for(++b_it; b_it != cc.contours.end(); ++b_it){\n+ const auto b_pts = contour_points_2d(*b_it);\n+ for(size_t i = 0U; i < a_pts.size(); ++i){\n+ const auto in = (i + 1U) % a_pts.size();\n+ for(size_t j = 0U; j < b_pts.size(); ++j){\n+ const auto jn = (j + 1U) % b_pts.size();\n+ if(segments_intersect_or_touch(a_pts[i], a_pts[in], b_pts[j], b_pts[jn])) return true;\n+ }\n+ }\n+ }\n+ }\n+ return false;\n+}\n+\n+bool ContourCollectionIsSimpleNested(const contour_collection &cc){\n+ for(const auto &c : cc.contours){\n+ if(!c.closed || (c.points.size() < 3U) || ContourHasSelfIntersection(c)) return false;\n+ }\n+ return !ContourCollectionsHaveIntersections(cc);\n+}\n+\n+double EstimateEquivalentSquareForContours(const contour_collection &cc,\n+ const EquivalentSquareHoleDetection hole_detection){\n+ if(!ContourCollectionIsSimpleNested(cc)){\n+ throw std::invalid_argument(\"Non-simple contour arrangement encountered; contours must be closed, non-self-intersecting, and non-intersecting\");\n+ }\n+\n+ double area = 0.0;\n+ double perimeter = 0.0;\n \n- const auto c_area = std::abs(c.Get_Signed_Area(true));\n- const auto c_perimeter = c.Perimeter();\n- if(!std::isfinite(c_area) || !std::isfinite(c_perimeter)){\n+ for(auto c_it = cc.contours.begin(); c_it != cc.contours.end(); ++c_it){\n+ const auto signed_area = c_it->Get_Signed_Area(true);\n+ const auto abs_area = std::abs(signed_area);\n+ const auto c_perimeter = c_it->Perimeter();\n+ if(!std::isfinite(signed_area) || !std::isfinite(c_perimeter)){\n throw std::invalid_argument(\"Encountered non-finite contour area or perimeter\");\n }\n- if(c_area <= 0.0 || c_perimeter <= 0.0){\n+ if(abs_area <= 0.0 || c_perimeter <= 0.0){\n throw std::invalid_argument(\"Encountered degenerate contour with non-positive area or perimeter\");\n }\n \n- area += c_area;\n+ if(hole_detection == EquivalentSquareHoleDetection::SignedContourOrientation){\n+ area += signed_area;\n+ }else{\n+ size_t containing_contours = 0U;\n+ const auto probe = contour_points_2d(*c_it).front();\n+ for(auto other_it = cc.contours.begin(); other_it != cc.contours.end(); ++other_it){\n+ if(other_it == c_it) continue;\n+ if(point_in_contour(probe, *other_it)) ++containing_contours;\n+ }\n+ area += ((containing_contours % 2U) == 0U) ? abs_area : -abs_area;\n+ }\n perimeter += c_perimeter;\n }\n \n+ area = std::abs(area);\n if(area <= 0.0 || perimeter <= 0.0){\n throw std::invalid_argument(\"No valid contour aperture was available\");\n }\n@@ -88,6 +200,16 @@ OperationDoc OpArgDocEstimateEquivalentSquare(){\n out.args.back().expected = true;\n out.args.back().examples = { \"FieldEquivalentSquare\", \"eqsq_mm\" };\n \n+ out.args.emplace_back();\n+ out.args.back().name = \"HoleDetection\";\n+ out.args.back().desc = \"Controls how nested contours are interpreted as holes, islands, and islands with holes.\"\n+ \" 'signed' uses contour signedness/orientation. 'overlap' ignores orientation and alternates\"\n+ \" aperture/hole status by nesting depth (even-odd-even-odd). Non-simple arrangements,\"\n+ \" including self-intersections, contour intersections, and T-intersections, are rejected.\";\n+ out.args.back().default_val = \"signed\";\n+ out.args.back().expected = true;\n+ out.args.back().examples = { \"signed\", \"overlap\" };\n+\n return out;\n }\n \n@@ -101,6 +223,7 @@ bool EstimateEquivalentSquare(Drover& DICOM_data,\n const auto ROILabelRegex = OptArgs.getValueStr(\"ROILabelRegex\").value();\n const auto ROISelection = OptArgs.getValueStr(\"ROISelection\").value();\n const auto ParameterKey = OptArgs.getValueStr(\"ParameterKey\").value();\n+ const auto HoleDetectionStr = OptArgs.getValueStr(\"HoleDetection\").value();\n \n //-----------------------------------------------------------------------------------------------------------------\n if(ParameterKey.empty()){\n@@ -117,24 +240,56 @@ bool EstimateEquivalentSquare(Drover& DICOM_data,\n throw std::invalid_argument(\"Exactly one ROI must be selected for equivalent square estimation\");\n }\n \n- const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get());\n+ const std::regex signed_regex(\"signed|orientation|contour_signedness\");\n+ const std::regex overlap_regex(\"overlap|simple_overlap|even_odd|evenodd\");\n+ EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n+ if(std::regex_match(HoleDetectionStr, signed_regex)){\n+ hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n+ }else if(std::regex_match(HoleDetectionStr, overlap_regex)){\n+ hole_detection = EquivalentSquareHoleDetection::SimpleOverlap;\n+ }else{\n+ throw std::invalid_argument(\"HoleDetection must be 'signed' or 'overlap'\");\n+ }\n \n- std::ostringstream ss;\n- ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n- InvocationMetadata[ParameterKey] = ss.str();\n+ try{\n+ const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get(), hole_detection);\n \n- YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n+ std::ostringstream ss;\n+ ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n+ InvocationMetadata[ParameterKey] = ss.str();\n \n- return true;\n+ YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n+ return true;\n+ }catch(const std::invalid_argument &e){\n+ YLOGWARN(\"Unable to estimate equivalent square: \" << e.what());\n+ return false;\n+ }\n }\n \n namespace {\n-contour_of_points make_rectangle(const double width, const double height, const double x_offset = 0.0){\n+contour_of_points make_rectangle(const double width,\n+ const double height,\n+ const double x_offset = 0.0,\n+ const double y_offset = 0.0,\n+ const bool clockwise = false){\n+ std::list> points{\n+ vec3(x_offset, y_offset, 0.0),\n","/bin/bash -lc \"git diff -- src/Operations/EstimateEquivalentSquare.cc src/Operations/EstimateEquivalentSquare.h | sed -n '1,240p'\"",[643],"5040",{"_484":644,"_93":498},"git diff -- src/Operations/EstimateEquivalentSquare.cc src/Operations/EstimateEquivalentSquare.h | sed -n '1,240p'",{"_440":646,"_421":422,"_442":428},{"_501":647,"_475":635,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"git diff -- src/Operations/EstimateEquivalentSquare.cc src/Operations/EstimateEquivalentSquare.h | sed -n '1,240p'\"}",{"_440":649,"_421":422,"_442":428},{"_443":-5,"_460":650,"_42":-5,"_446":-5,"_462":651,"_93":464},"gAAAAABqMyJxjnC3B3i8OQ-sV4LJ1I00mh7QAQCAUDgzznbm64v-AVelyw9HsWiaLGYIN4_JMNzcQUOKwwVTFjf0ogfF3rjrXtgoc75xm4M0EEpFVYoCnEFTLFpevm27dRiS8WGsBJCuxr94C8Ffe41iegpAJn0Mkvu5HOM_yjJK8djnfDcLqhOGfcAzi9Rk8LGAeZN4Lslcd_mqMZxT5xDYJkFsv6cj--Me2f4saHXaB2x5hvFtXCnlmgudqPX-s4WTKOjzAN7RTwY6NhC9vi-9rQRSnsd9ky7h6un_tCVx6OZny5_EHtMWmQI10UsEA7l0nNTwNm_QcrZKi2MYXw7JaI3vPAPoyT8msrmBe7B88uC4wIolStKY_61IZ5uyyD09wQ-FLwYNEPUdmEbfVVAL-uqTYUIb6iy4k0mST6yRDRe4mSefJrf692ejqzR4lNxDkMwHG91shQoAWUDA_XL3Q1hUdifvohF1-LRfO2qxv2-Iqh23vw7bNPD05rwHxkZVOhadhLupOca1vRFrC9p6y_ErSuRWjtHBFxWPXMZ2EM89jjfaTGG8t6okrf-4KZFUO-9mwkOTJB1QaS_2Ye0ej3LbYBc2XJG7USgQYqh8RGGu4TXQD7-BOTeuGeaXvvvxsHcMK6llRiNQmg6E3Kvv_IiSvMt47wmSNeMWPYasJNLJTKGeIjiYOF8uHlzv6X2tlslY7Zqb1mdnhP0Ywq2sb5lqA3ygsRlcAahwppeLAO-k-tofcUr5sUcIT-W_2cgotCgrEhyXYHVD1g4Rv_yfD0fv9nC82W4-RSuLH8pgxiGHpE0sTuKuupOr8dDl6S7_o_Yj5euq5qjyPz_VLQazRlBQGSN_dea2MWGBGsA028F3ia_E66OnbIuTRhbZBSlHOjRRRrysEp-enICzSbcxRy2zY9cWobf6uAjLACpYJyQC9UQbAFcDQE7cdW7SxWEzBhncvGzQ0ssIuoEKrZ8PoT7ZYYDC4ektK-EnuYvSrQO3DSKl29y9WfF3F5ekZiQV0zVQKnyVo2g6DZtfu4MzILtg0WYO0mJdSgeREDb-kb7EzN38rfmM8vye-R4yeITl8qh56KILXZi6o73hVPQBIzDS9EyJnlx6pEcNw1XH495MfGIIY1W93kiK75imf4v4mQQh9D0zE6PLC9a--9SG3I3eicYWulZKa6OTjmcejDB4_ZTddy5k6ZXIjcc4Irv5LYr7Jba3XBPh4uSM_tFzJgYGb1vtHfbbDtbk1OP2cdmc_KGddhYsKeVZ9h9ei7cZSE2YEPmaC9yorVd6Q9q0lTO6en3tzmYu_lkG0TrmMhf58_h8FHY3TB-nIp9O3o8JgADWW7XfANtTYyPEiMl6LAqTD5oULSBrkXMF7XWO_I5zhNzkIJiHulRgzYud7qREnrLgpu0Wq4uCCtAH21SJ8FXzqu-oFVCOgdzQQpldLeKrm_z8YWpPVspB1C8BykLW7LEJ2Gg_O5xkQ2N9KQHljQSFarRbLO4jvnerLC4vffuhIwTsw7PSfab2ZQPGgILrS8tY1SEQ_LH0MUTV1cfOTfT92H4K-S0YUxv8-uXI02-3tk4TWcZINIyZCXYQaRF-BQjU3GKZkPjeDVUGoxQS3udvzHZKSkzMeACptqEE5OPa-sMhhbji6mo2s9IogZjd9QcNFRx4CXaalbWOzwyiFF8o8qsnljDtSLrmWkgEVj6Mprvd-AkyNblp45uOwqYGZZhNBlhdARDsCBKI5dD_rCmcZ409R8OVy8slLbMylu0Db9TJlHgmeqgd8EKb3OHxuFQXRmdU61DkHUXd-g2aHIndFebLUsI_Ez_jIG_IqZvYwoOibyv94vdUmarzDQS0FuOsuEBv",[],{"_440":653,"_421":422,"_442":428},{"_443":654,"_42":655,"_462":656,"_93":464},[],"rs_0db9a5c18f3fd3b6016a33226e3318819abec9d2877441694e",[],{"_440":658,"_421":422,"_442":428},{"_475":659,"_446":-5,"_477":660,"_93":479},"call_Ym2PrXVz1EYLEt5shEogkw30","Chunk ID: a1fdb3\nWall time: 0.0001 seconds\nProcess exited with code 0\nOriginal token count: 929\nOutput:\n\n YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n return true;\n }catch(const std::invalid_argument &e){\n YLOGWARN(\"Unable to estimate equivalent square: \" << e.what());\n return false;\n }\n}\n\nnamespace {\ncontour_of_points make_rectangle(const double width,\n const double height,\n const double x_offset = 0.0,\n const double y_offset = 0.0,\n const bool clockwise = false){\n std::list> points{\n vec3(x_offset, y_offset, 0.0),\n vec3(x_offset + width, y_offset, 0.0),\n vec3(x_offset + width, y_offset + height, 0.0),\n vec3(x_offset, y_offset + height, 0.0)\n };\n if(clockwise) points.reverse();\n contour_of_points c(points);\n c.closed = true;\n return c;\n}\n\ncontour_of_points make_bowtie(){\n contour_of_points c(std::list>{\n vec3(0.0, 0.0, 0.0),\n vec3(10.0, 10.0, 0.0),\n vec3(0.0, 10.0, 0.0),\n vec3(10.0, 0.0, 0.0)\n });\n c.closed = true;\n return c;\n}\n\ncontour_collection make_collection(std::list> contours){\n contour_collection cc;\n cc.contours = std::move(contours);\n return cc;\n}\n}\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles square apertures\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0) });\n CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(10.0));\n}\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles rectangular apertures\"){\n const auto cc = make_collection({ make_rectangle(10.0, 20.0) });\n CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(40.0 / 3.0));\n}\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles multiple apertures\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 20.0) });\n CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(25.0 / 3.0));\n}\n\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles signed holes\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5, true) });\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SignedContourOrientation) == doctest::Approx(5.0));\n}\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles simple-overlap holes\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5) });\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SimpleOverlap) == doctest::Approx(5.0));\n}\n\nTEST_CASE(\"ContourHasSelfIntersection rejects bowtie contours\"){\n CHECK(ContourHasSelfIntersection(make_bowtie()));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(make_collection({ make_bowtie() })), std::invalid_argument);\n}\n\nTEST_CASE(\"ContourCollectionsHaveIntersections rejects crossing contours\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(10.0, 10.0, 5.0, 5.0) });\n CHECK(ContourCollectionsHaveIntersections(cc));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n}\n\nTEST_CASE(\"ContourCollectionsHaveIntersections rejects T-intersections\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 5.0, 2.5) });\n CHECK(ContourCollectionsHaveIntersections(cc));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n}\n",{"_440":662,"_421":422,"_442":428},{"_482":663,"_484":664,"_486":665,"_488":489,"_426":32,"_490":32,"_42":659,"_491":666,"_493":494,"_433":114,"_93":495},"\n YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n return true;\n }catch(const std::invalid_argument &e){\n YLOGWARN(\"Unable to estimate equivalent square: \" << e.what());\n return false;\n }\n}\n\nnamespace {\ncontour_of_points make_rectangle(const double width,\n const double height,\n const double x_offset = 0.0,\n const double y_offset = 0.0,\n const bool clockwise = false){\n std::list> points{\n vec3(x_offset, y_offset, 0.0),\n vec3(x_offset + width, y_offset, 0.0),\n vec3(x_offset + width, y_offset + height, 0.0),\n vec3(x_offset, y_offset + height, 0.0)\n };\n if(clockwise) points.reverse();\n contour_of_points c(points);\n c.closed = true;\n return c;\n}\n\ncontour_of_points make_bowtie(){\n contour_of_points c(std::list>{\n vec3(0.0, 0.0, 0.0),\n vec3(10.0, 10.0, 0.0),\n vec3(0.0, 10.0, 0.0),\n vec3(10.0, 0.0, 0.0)\n });\n c.closed = true;\n return c;\n}\n\ncontour_collection make_collection(std::list> contours){\n contour_collection cc;\n cc.contours = std::move(contours);\n return cc;\n}\n}\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles square apertures\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0) });\n CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(10.0));\n}\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles rectangular apertures\"){\n const auto cc = make_collection({ make_rectangle(10.0, 20.0) });\n CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(40.0 / 3.0));\n}\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles multiple apertures\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 20.0) });\n CHECK(EstimateEquivalentSquareForContours(cc) == doctest::Approx(25.0 / 3.0));\n}\n\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles signed holes\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5, true) });\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SignedContourOrientation) == doctest::Approx(5.0));\n}\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles simple-overlap holes\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5) });\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SimpleOverlap) == doctest::Approx(5.0));\n}\n\nTEST_CASE(\"ContourHasSelfIntersection rejects bowtie contours\"){\n CHECK(ContourHasSelfIntersection(make_bowtie()));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(make_collection({ make_bowtie() })), std::invalid_argument);\n}\n\nTEST_CASE(\"ContourCollectionsHaveIntersections rejects crossing contours\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(10.0, 10.0, 5.0, 5.0) });\n CHECK(ContourCollectionsHaveIntersections(cc));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n}\n\nTEST_CASE(\"ContourCollectionsHaveIntersections rejects T-intersections\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 5.0, 2.5) });\n CHECK(ContourCollectionsHaveIntersections(cc));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n}\n","/bin/bash -lc \"sed -n '260,520p' src/Operations/EstimateEquivalentSquare.cc\"",[667],"2746",{"_484":668,"_194":669,"_167":670,"_93":671},"sed -n '260,520p' src/Operations/EstimateEquivalentSquare.cc","EstimateEquivalentSquare.cc","/workspace/DICOMautomaton/src/Operations/EstimateEquivalentSquare.cc","read",{"_440":673,"_421":422,"_442":428},{"_501":674,"_475":659,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"sed -n '260,520p' src/Operations/EstimateEquivalentSquare.cc\"}",{"_440":676,"_421":422,"_442":428},{"_482":677,"_484":678,"_486":679,"_488":489,"_426":680,"_490":32,"_42":681,"_491":682,"_493":494,"_433":114,"_93":495},"//EstimateEquivalentSquare.cc - A part of DICOMautomaton 2026. Written by hal clark.\n\n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include //Needed for std::move.\n#include \n\n#include \"YgorMath.h\"\n#include \"YgorMisc.h\"\n#include \"YgorLog.h\"\n\n#include \"../Regex_Selectors.h\"\n#include \"../Structs.h\"\n\n#include \"EstimateEquivalentSquare.h\"\n\n#include \"../doctest20251212/doctest.h\"\n\n\n\nnamespace {\nconstexpr double contour_eps = 1.0e-8;\n\nstruct point2 {\n double x = 0.0;\n double y = 0.0;\n};\n\nstd::vector contour_points_2d(const contour_of_points &c){\n std::vector out;\n out.reserve(c.points.size());\n for(const auto &p : c.points) out.push_back({p.x, p.y});\n return out;\n}\n\ndouble orient(const point2 &a, const point2 &b, const point2 &c){\n return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n}\n\nbool points_same(const point2 &a, const point2 &b){\n return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\n}\n\nbool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n if(std::abs(orient(a, b, p)) > contour_eps) return false;\n return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n}\n\nbool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n const auto o1 = orient(a, b, c);\n const auto o2 = orient(a, b, d);\n const auto o3 = orient(c, d, a);\n const auto o4 = orient(c, d, b);\n if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n return true;\n }\n return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n}\n\nbool point_in_contour(const point2 &p, const contour_of_points &c){\n const auto pts = contour_points_2d(c);\n bool inside = false;\n for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n if(point_on_segment(p, pts[j], pts[i])) return true;\n const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\n && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n if(crosses) inside = !inside;\n }\n return inside;\n}\n}\n\nbool ContourHasSelfIntersection(const contour_of_points &c){\n const auto pts = contour_points_2d(c);\n if(pts.size() < 3U) return true;\n for(size_t i = 0U; i < pts.size(); ++i){\n const auto in = (i + 1U) % pts.size();\n for(size_t j = i + 1U; j < pts.size(); ++j){\n const auto jn = (j + 1U) % pts.size();\n const bool adjacent = (i == j) || (in == j) || (jn == i);\n if(adjacent) continue;\n if(segments_intersect_or_touch(pts[i], pts[in], pts[j], pts[jn])) return true;\n }\n }\n return false;\n}\n\nbool ContourCollectionsHaveIntersections(const contour_collection &cc){\n for(auto a_it = cc.contours.begin(); a_it != cc.contours.end(); ++a_it){\n const auto a_pts = contour_points_2d(*a_it);\n auto b_it = a_it;\n for(++b_it; b_it != cc.contours.end(); ++b_it){\n const auto b_pts = contour_points_2d(*b_it);\n for(size_t i = 0U; i < a_pts.size(); ++i){\n const auto in = (i + 1U) % a_pts.size();\n for(size_t j = 0U; j < b_pts.size(); ++j){\n const auto jn = (j + 1U) % b_pts.size();\n if(segments_intersect_or_touch(a_pts[i], a_pts[in], b_pts[j], b_pts[jn])) return true;\n }\n }\n }\n }\n return false;\n}\n\nbool ContourCollectionIsSimpleNested(const contour_collection &cc){\n for(const auto &c : cc.contours){\n if(!c.closed || (c.points.size() < 3U) || ContourHasSelfIntersection(c)) return false;\n }\n return !ContourCollectionsHaveIntersections(cc);\n}\n\ndouble EstimateEquivalentSquareForContours(const contour_collection &cc,\n const EquivalentSquareHoleDetection hole_detection){\n if(!ContourCollectionIsSimpleNested(cc)){\n throw std::invalid_argument(\"Non-simple contour arrangement encountered; contours must be closed, non-self-intersecting, and non-intersecting\");\n }\n\n double area = 0.0;\n double perimeter = 0.0;\n\n for(auto c_it = cc.contours.begin(); c_it != cc.contours.end(); ++c_it){\n const auto signed_area = c_it->Get_Signed_Area(true);\n const auto abs_area = std::abs(signed_area);\n const auto c_perimeter = c_it->Perimeter();\n if(!std::isfinite(signed_area) || !std::isfinite(c_perimeter)){\n throw std::invalid_argument(\"Encountered non-finite contour area or perimeter\");\n }\n if(abs_area <= 0.0 || c_perimeter <= 0.0){\n throw std::invalid_argument(\"Encountered degenerate contour with non-positive area or perimeter\");\n }\n\n if(hole_detection == EquivalentSquareHoleDetection::SignedContourOrientation){\n area += signed_area;\n }else{\n size_t containing_contours = 0U;\n const auto probe = contour_points_2d(*c_it).front();\n for(auto other_it = cc.contours.begin(); other_it != cc.contours.end(); ++other_it){\n if(other_it == c_it) continue;\n if(point_in_contour(probe, *other_it)) ++containing_contours;\n }\n area += ((containing_contours % 2U) == 0U) ? abs_area : -abs_area;\n }\n perimeter += c_perimeter;\n }\n\n area = std::abs(area);\n if(area <= 0.0 || perimeter <= 0.0){\n throw std::invalid_argument(\"No valid contour aperture was available\");\n }\n\n return 4.0 * area / perimeter;\n}\n\nOperationDoc OpArgDocEstimateEquivalentSquare(){\n OperationDoc out;\n out.name = \"EstimateEquivalentSquare\";\n\n out.tags.emplace_back(\"category: contour processing\");\n out.tags.emplace_back(\"category: parameter table\");\n out.tags.emplace_back(\"category: radiotherapy treatment planning\");\n\n out.desc =\n \"Estimate the Sterling equivalent square for an ROI containing one or more closed planar contours.\"\n \" The selected contours are interpreted as radiotherapy field apertures in millimetres, and the\"\n \" equivalent square is computed as 4*A/P, where A is the total aperture area and P is the total\"\n \" aperture perimeter. The result has scale units of millimetres and is stored in the global parameter table.\";\n\n out.args.emplace_back();\n out.args.back() = NCWhitelistOpArgDoc();\n out.args.back().name = \"NormalizedROILabelRegex\";\n out.args.back().default_val = \".*\";\n\n out.args.emplace_back();\n out.args.back() = RCWhitelistOpArgDoc();\n out.args.back().name = \"ROILabelRegex\";\n out.args.back().default_val = \".*\";\n\n out.args.emplace_back();\n out.args.back() = CCWhitelistOpArgDoc();\n out.args.back().name = \"ROISelection\";\n out.args.back().default_val = \"all\";\n\n out.args.emplace_back();\n out.args.back().name = \"ParameterKey\";\n out.args.back().desc = \"The key under which the equivalent square will be stored in the global parameter table.\";\n out.args.back().default_val = \"EquivalentSquare_mm\";\n out.args.back().expected = true;\n out.args.back().examples = { \"FieldEquivalentSquare\", \"eqsq_mm\" };\n\n out.args.emplace_back();\n out.args.back().name = \"HoleDetection\";\n out.args.back().desc = \"Controls how nested contours are interpreted as holes, islands, and islands with holes.\"\n \" 'signed' uses contour signedness/orientation. 'overlap' ignores orientation and alternates\"\n \" aperture/hole status by nesting depth (even-odd-even-odd). Non-simple arrangements,\"\n \" including self-intersections, contour intersections, and T-intersections, are rejected.\";\n out.args.back().default_val = \"signed\";\n out.args.back().expected = true;\n out.args.back().examples = { \"signed\", \"overlap\" };\n\n return out;\n}\n\nbool EstimateEquivalentSquare(Drover& DICOM_data,\n const OperationArgPkg& OptArgs,\n std::map& InvocationMetadata,\n const std::string& /*FilenameLex*/){\n\n //---------------------------------------------- User Parameters --------------------------------------------------\n const auto NormalizedROILabelRegex = OptArgs.getValueStr(\"NormalizedROILabelRegex\").value();\n const auto ROILabelRegex = OptArgs.getValueStr(\"ROILabelRegex\").value();\n const auto ROISelection = OptArgs.getValueStr(\"ROISelection\").value();\n const auto ParameterKey = OptArgs.getValueStr(\"ParameterKey\").value();\n const auto HoleDetectionStr = OptArgs.getValueStr(\"HoleDetection\").value();\n\n //-----------------------------------------------------------------------------------------------------------------\n if(ParameterKey.empty()){\n throw std::invalid_argument(\"ParameterKey must not be empty\");\n }\n\n auto cc_all = All_CCs( DICOM_data );\n auto cc_ROIs = Whitelist( cc_all, ROILabelRegex, NormalizedROILabelRegex, ROISelection );\n if(cc_ROIs.empty()){\n throw std::invalid_argument(\"No contours selected. Cannot continue.\");\n }\n\n if(cc_ROIs.size() != 1UL){\n throw std::invalid_argument(\"Exactly one ROI must be selected for equivalent square estimation\");\n }\n\n const std::regex signed_regex(\"signed|orientation|contour_signedness\");\n const std::regex overlap_regex(\"overlap|simple_overlap|even_odd|evenodd\");\n EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n if(std::regex_match(HoleDetectionStr, signed_regex)){\n hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n }else if(std::regex_match(HoleDetectionStr, overlap_regex)){\n hole_detection = EquivalentSquareHoleDetection::SimpleOverlap;\n }else{\n throw std::invalid_argument(\"HoleDetection must be 'signed' or 'overlap'\");\n }\n\n try{\n const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get(), hole_detection);\n\n std::ostringstream ss;\n ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n InvocationMetadata[ParameterKey] = ss.str();\n\n","/bin/bash -lc \"cat <<'EOF' >> /tmp/tests.txt\nEOF\npython3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.cc')\ns=p.read_text()\ns=s.replace('''contour_of_points make_rectangle(const double width, const double height, const double x_offset = 0.0){\n contour_of_points c(std::list>{\n vec3(x_offset, 0.0, 0.0),\n vec3(x_offset + width, 0.0, 0.0),\n vec3(x_offset + width, height, 0.0),\n vec3(x_offset, height, 0.0)\n });\n c.closed = true;\n return c;\n}\n''','''contour_of_points make_rectangle(const double width,\n const double height,\n const double x_offset = 0.0,\n const double y_offset = 0.0,\n const bool clockwise = false){\n std::list> points{\n vec3(x_offset, y_offset, 0.0),\n vec3(x_offset + width, y_offset, 0.0),\n vec3(x_offset + width, y_offset + height, 0.0),\n vec3(x_offset, y_offset + height, 0.0)\n };\n if(clockwise) points.reverse();\n contour_of_points c(points);\n c.closed = true;\n return c;\n}\n\ncontour_of_points make_bowtie(){\n contour_of_points c(std::list>{\n vec3(0.0, 0.0, 0.0),\n vec3(10.0, 10.0, 0.0),\n vec3(0.0, 10.0, 0.0),\n vec3(10.0, 0.0, 0.0)\n });\n c.closed = true;\n return c;\n}\n''')\ns += r'''\n\nTEST_CASE(\\\"EstimateEquivalentSquareForContours handles signed holes\\\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5, true) });\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SignedContourOrientation) == doctest::Approx(5.0));\n}\n\nTEST_CASE(\\\"EstimateEquivalentSquareForContours handles simple-overlap holes\\\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5) });\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SimpleOverlap) == doctest::Approx(5.0));\n}\n\nTEST_CASE(\\\"ContourHasSelfIntersection rejects bowtie contours\\\"){\n CHECK(ContourHasSelfIntersection(make_bowtie()));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(make_collection({ make_bowtie() })), std::invalid_argument);\n}\n\nTEST_CASE(\\\"ContourCollectionsHaveIntersections rejects crossing contours\\\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(10.0, 10.0, 5.0, 5.0) });\n CHECK(ContourCollectionsHaveIntersections(cc));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n}\n\nTEST_CASE(\\\"ContourCollectionsHaveIntersections rejects T-intersections\\\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 5.0, 2.5) });\n CHECK(ContourCollectionsHaveIntersections(cc));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n}\n'''\np.write_text(s)\nPY\nsed -n '1,260p' src/Operations/EstimateEquivalentSquare.cc\"",[683],490,"call_y0aL4ZpI9F04Nh0LCLcLCmwy","9016",{"_484":684,"_93":498},"cat <<'EOF' >> /tmp/tests.txt\nEOF\npython3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.cc')\ns=p.read_text()\ns=s.replace('''contour_of_points make_rectangle(const double width, const double height, const double x_offset = 0.0){\n contour_of_points c(std::list>{\n vec3(x_offset, 0.0, 0.0),\n vec3(x_offset + width, 0.0, 0.0),\n vec3(x_offset + width, height, 0.0),\n vec3(x_offset, height, 0.0)\n });\n c.closed = true;\n return c;\n}\n''','''contour_of_points make_rectangle(const double width,\n const double height,\n const double x_offset = 0.0,\n const double y_offset = 0.0,\n const bool clockwise = false){\n std::list> points{\n vec3(x_offset, y_offset, 0.0),\n vec3(x_offset + width, y_offset, 0.0),\n vec3(x_offset + width, y_offset + height, 0.0),\n vec3(x_offset, y_offset + height, 0.0)\n };\n if(clockwise) points.reverse();\n contour_of_points c(points);\n c.closed = true;\n return c;\n}\n\ncontour_of_points make_bowtie(){\n contour_of_points c(std::list>{\n vec3(0.0, 0.0, 0.0),\n vec3(10.0, 10.0, 0.0),\n vec3(0.0, 10.0, 0.0),\n vec3(10.0, 0.0, 0.0)\n });\n c.closed = true;\n return c;\n}\n''')\ns += r'''\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles signed holes\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5, true) });\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SignedContourOrientation) == doctest::Approx(5.0));\n}\n\nTEST_CASE(\"EstimateEquivalentSquareForContours handles simple-overlap holes\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5) });\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SimpleOverlap) == doctest::Approx(5.0));\n}\n\nTEST_CASE(\"ContourHasSelfIntersection rejects bowtie contours\"){\n CHECK(ContourHasSelfIntersection(make_bowtie()));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(make_collection({ make_bowtie() })), std::invalid_argument);\n}\n\nTEST_CASE(\"ContourCollectionsHaveIntersections rejects crossing contours\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(10.0, 10.0, 5.0, 5.0) });\n CHECK(ContourCollectionsHaveIntersections(cc));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n}\n\nTEST_CASE(\"ContourCollectionsHaveIntersections rejects T-intersections\"){\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 5.0, 2.5) });\n CHECK(ContourCollectionsHaveIntersections(cc));\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\n}\n'''\np.write_text(s)\nPY\nsed -n '1,260p' src/Operations/EstimateEquivalentSquare.cc",{"_440":686,"_421":422,"_442":428},{"_475":681,"_446":-5,"_477":687,"_93":479},"Chunk ID: 8633d2\nWall time: 0.3900 seconds\nProcess exited with code 0\nOriginal token count: 2678\nOutput:\n//EstimateEquivalentSquare.cc - A part of DICOMautomaton 2026. Written by hal clark.\n\n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include \n#include //Needed for std::move.\n#include \n\n#include \"YgorMath.h\"\n#include \"YgorMisc.h\"\n#include \"YgorLog.h\"\n\n#include \"../Regex_Selectors.h\"\n#include \"../Structs.h\"\n\n#include \"EstimateEquivalentSquare.h\"\n\n#include \"../doctest20251212/doctest.h\"\n\n\n\nnamespace {\nconstexpr double contour_eps = 1.0e-8;\n\nstruct point2 {\n double x = 0.0;\n double y = 0.0;\n};\n\nstd::vector contour_points_2d(const contour_of_points &c){\n std::vector out;\n out.reserve(c.points.size());\n for(const auto &p : c.points) out.push_back({p.x, p.y});\n return out;\n}\n\ndouble orient(const point2 &a, const point2 &b, const point2 &c){\n return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n}\n\nbool points_same(const point2 &a, const point2 &b){\n return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\n}\n\nbool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n if(std::abs(orient(a, b, p)) > contour_eps) return false;\n return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n}\n\nbool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n const auto o1 = orient(a, b, c);\n const auto o2 = orient(a, b, d);\n const auto o3 = orient(c, d, a);\n const auto o4 = orient(c, d, b);\n if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n return true;\n }\n return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n}\n\nbool point_in_contour(const point2 &p, const contour_of_points &c){\n const auto pts = contour_points_2d(c);\n bool inside = false;\n for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n if(point_on_segment(p, pts[j], pts[i])) return true;\n const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\n && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n if(crosses) inside = !inside;\n }\n return inside;\n}\n}\n\nbool ContourHasSelfIntersection(const contour_of_points &c){\n const auto pts = contour_points_2d(c);\n if(pts.size() < 3U) return true;\n for(size_t i = 0U; i < pts.size(); ++i){\n const auto in = (i + 1U) % pts.size();\n for(size_t j = i + 1U; j < pts.size(); ++j){\n const auto jn = (j + 1U) % pts.size();\n const bool adjacent = (i == j) || (in == j) || (jn == i);\n if(adjacent) continue;\n if(segments_intersect_or_touch(pts[i], pts[in], pts[j], pts[jn])) return true;\n }\n }\n return false;\n}\n\nbool ContourCollectionsHaveIntersections(const contour_collection &cc){\n for(auto a_it = cc.contours.begin(); a_it != cc.contours.end(); ++a_it){\n const auto a_pts = contour_points_2d(*a_it);\n auto b_it = a_it;\n for(++b_it; b_it != cc.contours.end(); ++b_it){\n const auto b_pts = contour_points_2d(*b_it);\n for(size_t i = 0U; i < a_pts.size(); ++i){\n const auto in = (i + 1U) % a_pts.size();\n for(size_t j = 0U; j < b_pts.size(); ++j){\n const auto jn = (j + 1U) % b_pts.size();\n if(segments_intersect_or_touch(a_pts[i], a_pts[in], b_pts[j], b_pts[jn])) return true;\n }\n }\n }\n }\n return false;\n}\n\nbool ContourCollectionIsSimpleNested(const contour_collection &cc){\n for(const auto &c : cc.contours){\n if(!c.closed || (c.points.size() < 3U) || ContourHasSelfIntersection(c)) return false;\n }\n return !ContourCollectionsHaveIntersections(cc);\n}\n\ndouble EstimateEquivalentSquareForContours(const contour_collection &cc,\n const EquivalentSquareHoleDetection hole_detection){\n if(!ContourCollectionIsSimpleNested(cc)){\n throw std::invalid_argument(\"Non-simple contour arrangement encountered; contours must be closed, non-self-intersecting, and non-intersecting\");\n }\n\n double area = 0.0;\n double perimeter = 0.0;\n\n for(auto c_it = cc.contours.begin(); c_it != cc.contours.end(); ++c_it){\n const auto signed_area = c_it->Get_Signed_Area(true);\n const auto abs_area = std::abs(signed_area);\n const auto c_perimeter = c_it->Perimeter();\n if(!std::isfinite(signed_area) || !std::isfinite(c_perimeter)){\n throw std::invalid_argument(\"Encountered non-finite contour area or perimeter\");\n }\n if(abs_area <= 0.0 || c_perimeter <= 0.0){\n throw std::invalid_argument(\"Encountered degenerate contour with non-positive area or perimeter\");\n }\n\n if(hole_detection == EquivalentSquareHoleDetection::SignedContourOrientation){\n area += signed_area;\n }else{\n size_t containing_contours = 0U;\n const auto probe = contour_points_2d(*c_it).front();\n for(auto other_it = cc.contours.begin(); other_it != cc.contours.end(); ++other_it){\n if(other_it == c_it) continue;\n if(point_in_contour(probe, *other_it)) ++containing_contours;\n }\n area += ((containing_contours % 2U) == 0U) ? abs_area : -abs_area;\n }\n perimeter += c_perimeter;\n }\n\n area = std::abs(area);\n if(area <= 0.0 || perimeter <= 0.0){\n throw std::invalid_argument(\"No valid contour aperture was available\");\n }\n\n return 4.0 * area / perimeter;\n}\n\nOperationDoc OpArgDocEstimateEquivalentSquare(){\n OperationDoc out;\n out.name = \"EstimateEquivalentSquare\";\n\n out.tags.emplace_back(\"category: contour processing\");\n out.tags.emplace_back(\"category: parameter table\");\n out.tags.emplace_back(\"category: radiotherapy treatment planning\");\n\n out.desc =\n \"Estimate the Sterling equivalent square for an ROI containing one or more closed planar contours.\"\n \" The selected contours are interpreted as radiotherapy field apertures in millimetres, and the\"\n \" equivalent square is computed as 4*A/P, where A is the total aperture area and P is the total\"\n \" aperture perimeter. The result has scale units of millimetres and is stored in the global parameter table.\";\n\n out.args.emplace_back();\n out.args.back() = NCWhitelistOpArgDoc();\n out.args.back().name = \"NormalizedROILabelRegex\";\n out.args.back().default_val = \".*\";\n\n out.args.emplace_back();\n out.args.back() = RCWhitelistOpArgDoc();\n out.args.back().name = \"ROILabelRegex\";\n out.args.back().default_val = \".*\";\n\n out.args.emplace_back();\n out.args.back() = CCWhitelistOpArgDoc();\n out.args.back().name = \"ROISelection\";\n out.args.back().default_val = \"all\";\n\n out.args.emplace_back();\n out.args.back().name = \"ParameterKey\";\n out.args.back().desc = \"The key under which the equivalent square will be stored in the global parameter table.\";\n out.args.back().default_val = \"EquivalentSquare_mm\";\n out.args.back().expected = true;\n out.args.back().examples = { \"FieldEquivalentSquare\", \"eqsq_mm\" };\n\n out.args.emplace_back();\n out.args.back().name = \"HoleDetection\";\n out.args.back().desc = \"Controls how nested contours are interpreted as holes, islands, and islands with holes.\"\n \" 'signed' uses contour signedness/orientation. 'overlap' ignores orientation and alternates\"\n \" aperture/hole status by nesting depth (even-odd-even-odd). Non-simple arrangements,\"\n \" including self-intersections, contour intersections, and T-intersections, are rejected.\";\n out.args.back().default_val = \"signed\";\n out.args.back().expected = true;\n out.args.back().examples = { \"signed\", \"overlap\" };\n\n return out;\n}\n\nbool EstimateEquivalentSquare(Drover& DICOM_data,\n const OperationArgPkg& OptArgs,\n std::map& InvocationMetadata,\n const std::string& /*FilenameLex*/){\n\n //---------------------------------------------- User Parameters --------------------------------------------------\n const auto NormalizedROILabelRegex = OptArgs.getValueStr(\"NormalizedROILabelRegex\").value();\n const auto ROILabelRegex = OptArgs.getValueStr(\"ROILabelRegex\").value();\n const auto ROISelection = OptArgs.getValueStr(\"ROISelection\").value();\n const auto ParameterKey = OptArgs.getValueStr(\"ParameterKey\").value();\n const auto HoleDetectionStr = OptArgs.getValueStr(\"HoleDetection\").value();\n\n //-----------------------------------------------------------------------------------------------------------------\n if(ParameterKey.empty()){\n throw std::invalid_argument(\"ParameterKey must not be empty\");\n }\n\n auto cc_all = All_CCs( DICOM_data );\n auto cc_ROIs = Whitelist( cc_all, ROILabelRegex, NormalizedROILabelRegex, ROISelection );\n if(cc_ROIs.empty()){\n throw std::invalid_argument(\"No contours selected. Cannot continue.\");\n }\n\n if(cc_ROIs.size() != 1UL){\n throw std::invalid_argument(\"Exactly one ROI must be selected for equivalent square estimation\");\n }\n\n const std::regex signed_regex(\"signed|orientation|contour_signedness\");\n const std::regex overlap_regex(\"overlap|simple_overlap|even_odd|evenodd\");\n EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n if(std::regex_match(HoleDetectionStr, signed_regex)){\n hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n }else if(std::regex_match(HoleDetectionStr, overlap_regex)){\n hole_detection = EquivalentSquareHoleDetection::SimpleOverlap;\n }else{\n throw std::invalid_argument(\"HoleDetection must be 'signed' or 'overlap'\");\n }\n\n try{\n const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get(), hole_detection);\n\n std::ostringstream ss;\n ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n InvocationMetadata[ParameterKey] = ss.str();\n\n",{"_440":689,"_421":422,"_442":428},{"_501":690,"_475":681,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"cat <<'EOF' >> /tmp/tests.txt\\nEOF\\npython3 - <<'PY'\\nfrom pathlib import Path\\np=Path('src/Operations/EstimateEquivalentSquare.cc')\\ns=p.read_text()\\ns=s.replace('''contour_of_points make_rectangle(const double width, const double height, const double x_offset = 0.0){\\n contour_of_points c(std::list>{\\n vec3(x_offset, 0.0, 0.0),\\n vec3(x_offset + width, 0.0, 0.0),\\n vec3(x_offset + width, height, 0.0),\\n vec3(x_offset, height, 0.0)\\n });\\n c.closed = true;\\n return c;\\n}\\n''','''contour_of_points make_rectangle(const double width,\\n const double height,\\n const double x_offset = 0.0,\\n const double y_offset = 0.0,\\n const bool clockwise = false){\\n std::list> points{\\n vec3(x_offset, y_offset, 0.0),\\n vec3(x_offset + width, y_offset, 0.0),\\n vec3(x_offset + width, y_offset + height, 0.0),\\n vec3(x_offset, y_offset + height, 0.0)\\n };\\n if(clockwise) points.reverse();\\n contour_of_points c(points);\\n c.closed = true;\\n return c;\\n}\\n\\ncontour_of_points make_bowtie(){\\n contour_of_points c(std::list>{\\n vec3(0.0, 0.0, 0.0),\\n vec3(10.0, 10.0, 0.0),\\n vec3(0.0, 10.0, 0.0),\\n vec3(10.0, 0.0, 0.0)\\n });\\n c.closed = true;\\n return c;\\n}\\n''')\\ns += r'''\\n\\nTEST_CASE(\\\"EstimateEquivalentSquareForContours handles signed holes\\\"){\\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5, true) });\\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SignedContourOrientation) == doctest::Approx(5.0));\\n}\\n\\nTEST_CASE(\\\"EstimateEquivalentSquareForContours handles simple-overlap holes\\\"){\\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 2.5, 2.5) });\\n CHECK(EstimateEquivalentSquareForContours(cc, EquivalentSquareHoleDetection::SimpleOverlap) == doctest::Approx(5.0));\\n}\\n\\nTEST_CASE(\\\"ContourHasSelfIntersection rejects bowtie contours\\\"){\\n CHECK(ContourHasSelfIntersection(make_bowtie()));\\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(make_collection({ make_bowtie() })), std::invalid_argument);\\n}\\n\\nTEST_CASE(\\\"ContourCollectionsHaveIntersections rejects crossing contours\\\"){\\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(10.0, 10.0, 5.0, 5.0) });\\n CHECK(ContourCollectionsHaveIntersections(cc));\\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\\n}\\n\\nTEST_CASE(\\\"ContourCollectionsHaveIntersections rejects T-intersections\\\"){\\n const auto cc = make_collection({ make_rectangle(10.0, 10.0), make_rectangle(5.0, 5.0, 5.0, 2.5) });\\n CHECK(ContourCollectionsHaveIntersections(cc));\\n CHECK_THROWS_AS(EstimateEquivalentSquareForContours(cc), std::invalid_argument);\\n}\\n'''\\np.write_text(s)\\nPY\\nsed -n '1,260p' src/Operations/EstimateEquivalentSquare.cc\"}",{"_440":692,"_421":422,"_442":428},{"_443":-5,"_460":693,"_42":-5,"_446":-5,"_462":694,"_93":464},"gAAAAABqMyJZSMp4x3iiIT2MOqoerH5lT_DSr9vyzWXcU02SXF3Pz4zAKfZshdJLbcryGz8Ccf4XBZFyguf_xi8lIQemvxInmGN2lrFPBbJPIcZShBVCpg-WfZnU97I6goz0ZRlwll2aPxd8RjgTODfF5td6jA-iNZckShecqOXROo18bPlH7pXp-q1JJNaOAI4UazKTrwjnX9l1isdFXGgsQHu7Tm7pRSgSCWfJem1m_0QUfEsNqvknoUuh2_Ln7SwxgsLZ480R6fAZjrnHhjqIMRBXIOZ6KuhEqZoD4qtf24_IItXX7IrEaEJ3KJNrBzQ2miX4-tzFI21iODbhpeBX8vqegiy12IqKau_niACrmp2nQT-nIicds6fxeJPliUSK3VUjFjTzpTvKqVJqYn3R7azeJie6Dm2w2v9R8uLhK9IEIloA5htPqklMamQGFw7zi0DmyC-peFQH7i8yifgsK7TBAots0dlGCwBU3scjS0kFYKfO0s3DsLlIJTdPrBKCDI-yYHMsI8I2TLv6UlflfD53ArPV-0LOVewesUBzhDPX4VgW_DNB0zixj8Oqi4e8se-TrDIqv-WPRPVLj36i0T_UbDs4Y8M1WwmdoFtn8MzlNmM_F4snOmoOzjIge8CRWMrPxhqknHs2WLoY4sn2dgwH2Y-GdUbV7e4YDL2OyT4iB5up-MNWZv7l0RTH7RTn9CO_7joL9-18n9TZAiCfs2GNSVDdm2qVnexZ9rjDWaLccQ-UNMbynzm5ePGiXcn5ZDqnz1WWXKrOfuwn3E_ih6kUO_vjrA0zrd5gzpmqhq0ZoPxlRJ3OJMNnxLmh-bCz65mny4pRXNnEjqdffjos8CeG2sKq0NuoQUUkHtGv4lEAg5JTnmUYnA--g8QX5Dy_GeCIbwd7rhnuz6aiKg4H35fXDziv2lSfcrQk_JBGiWkdjOTBCKeeQTF_2dsygxassyekheHMKILJXPJzPsCY5uWaBOja-ioEYd66PE3xgHSS7ydL3L22AX4WIOJ67GBQFrFegQcxHq1ylX2qe_oWH-UlRkNwsk22H7hHfIG8DWaUmJXT25srIl6qoSr4F4Cc_bvAOUrGlc_CIwzUMnqXQgEBk31rMY_YEvYSzdt_R8gIsSdTPZUqExZ0_Nfj0JHP21zz806Yxmz2ccKNw3KIEkdAv0FaaQ==",[695],{"_46":696,"_93":467},"**Evaluating helper functions**\n\nI’m thinking about tests with reverse and nested structures. I’ll need a helper for rectangles in a clockwise manner, and I’m considering a bowtie and overlapping T shapes. I should check for potential namespace duplicates because we have a helper in one namespace and might encounter another later. It seems like keeping them separated is vital for organization and clarity, but I want to ensure I address the issues effectively!",{"_440":698,"_421":422,"_442":428},{"_443":699,"_42":700,"_462":701,"_93":464},[],"rs_0db9a5c18f3fd3b6016a332256f660819abbba9c0f9a0227e4",[696],{"_440":703,"_421":422,"_442":428},{"_482":-5,"_484":704,"_486":705,"_488":489,"_426":706,"_490":32,"_42":707,"_491":708,"_493":494,"_433":114,"_93":495},"/bin/bash -lc \"python3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.cc')\ns=p.read_text().replace('#include //Needed for std::move.\\\\n', '#include //Needed for std::move.\\\\n#include \\\\n')\ns=s.replace(''' out.args.back().desc = \\\"The key under which the equivalent square will be stored in the global parameter table.\\\";\n out.args.back().default_val = \\\"EquivalentSquare_mm\\\";\n out.args.back().expected = true;\n out.args.back().examples = { \\\"FieldEquivalentSquare\\\", \\\"eqsq_mm\\\" };\n''',''' out.args.back().desc = \\\"The key under which the equivalent square will be stored in the global parameter table.\\\";\n out.args.back().default_val = \\\"EquivalentSquare_mm\\\";\n out.args.back().expected = true;\n out.args.back().examples = { \\\"FieldEquivalentSquare\\\", \\\"eqsq_mm\\\" };\n\n out.args.emplace_back();\n out.args.back().name = \\\"HoleDetection\\\";\n out.args.back().desc = \\\"Controls how nested contours are interpreted as holes, islands, and islands with holes.\\\"\n \\\" 'signed' uses contour signedness/orientation. 'overlap' ignores orientation and alternates\\\"\n \\\" aperture/hole status by nesting depth (even-odd-even-odd). Non-simple arrangements,\\\"\n \\\" including self-intersections, contour intersections, and T-intersections, are rejected.\\\";\n out.args.back().default_val = \\\"signed\\\";\n out.args.back().expected = true;\n out.args.back().examples = { \\\"signed\\\", \\\"overlap\\\" };\n''')\ns=s.replace(''' const auto ParameterKey = OptArgs.getValueStr(\\\"ParameterKey\\\").value();\n''',''' const auto ParameterKey = OptArgs.getValueStr(\\\"ParameterKey\\\").value();\n const auto HoleDetectionStr = OptArgs.getValueStr(\\\"HoleDetection\\\").value();\n''')\ns=s.replace(''' const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get());\n\n std::ostringstream ss;\n ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n InvocationMetadata[ParameterKey] = ss.str();\n\n YLOGINFO(\\\"Stored equivalent square '\\\" << ss.str() << \\\"' mm with key '\\\" << ParameterKey << \\\"'\\\");\n\n return true;\n''',''' const std::regex signed_regex(\\\"signed|orientation|contour_signedness\\\");\n const std::regex overlap_regex(\\\"overlap|simple_overlap|even_odd|evenodd\\\");\n EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n if(std::regex_match(HoleDetectionStr, signed_regex)){\n hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n }else if(std::regex_match(HoleDetectionStr, overlap_regex)){\n hole_detection = EquivalentSquareHoleDetection::SimpleOverlap;\n }else{\n throw std::invalid_argument(\\\"HoleDetection must be 'signed' or 'overlap'\\\");\n }\n\n try{\n const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get(), hole_detection);\n\n std::ostringstream ss;\n ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n InvocationMetadata[ParameterKey] = ss.str();\n\n YLOGINFO(\\\"Stored equivalent square '\\\" << ss.str() << \\\"' mm with key '\\\" << ParameterKey << \\\"'\\\");\n return true;\n }catch(const std::invalid_argument &e){\n YLOGWARN(\\\"Unable to estimate equivalent square: \\\" << e.what());\n return false;\n }\n''')\np.write_text(s)\nPY\"",[709],488,"call_trkpDISIVDXf23LskQdzad8a","90380",{"_484":710,"_93":498},"python3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.cc')\ns=p.read_text().replace('#include //Needed for std::move.\\n', '#include //Needed for std::move.\\n#include \\n')\ns=s.replace(''' out.args.back().desc = \"The key under which the equivalent square will be stored in the global parameter table.\";\n out.args.back().default_val = \"EquivalentSquare_mm\";\n out.args.back().expected = true;\n out.args.back().examples = { \"FieldEquivalentSquare\", \"eqsq_mm\" };\n''',''' out.args.back().desc = \"The key under which the equivalent square will be stored in the global parameter table.\";\n out.args.back().default_val = \"EquivalentSquare_mm\";\n out.args.back().expected = true;\n out.args.back().examples = { \"FieldEquivalentSquare\", \"eqsq_mm\" };\n\n out.args.emplace_back();\n out.args.back().name = \"HoleDetection\";\n out.args.back().desc = \"Controls how nested contours are interpreted as holes, islands, and islands with holes.\"\n \" 'signed' uses contour signedness/orientation. 'overlap' ignores orientation and alternates\"\n \" aperture/hole status by nesting depth (even-odd-even-odd). Non-simple arrangements,\"\n \" including self-intersections, contour intersections, and T-intersections, are rejected.\";\n out.args.back().default_val = \"signed\";\n out.args.back().expected = true;\n out.args.back().examples = { \"signed\", \"overlap\" };\n''')\ns=s.replace(''' const auto ParameterKey = OptArgs.getValueStr(\"ParameterKey\").value();\n''',''' const auto ParameterKey = OptArgs.getValueStr(\"ParameterKey\").value();\n const auto HoleDetectionStr = OptArgs.getValueStr(\"HoleDetection\").value();\n''')\ns=s.replace(''' const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get());\n\n std::ostringstream ss;\n ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n InvocationMetadata[ParameterKey] = ss.str();\n\n YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n\n return true;\n''',''' const std::regex signed_regex(\"signed|orientation|contour_signedness\");\n const std::regex overlap_regex(\"overlap|simple_overlap|even_odd|evenodd\");\n EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n if(std::regex_match(HoleDetectionStr, signed_regex)){\n hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\n }else if(std::regex_match(HoleDetectionStr, overlap_regex)){\n hole_detection = EquivalentSquareHoleDetection::SimpleOverlap;\n }else{\n throw std::invalid_argument(\"HoleDetection must be 'signed' or 'overlap'\");\n }\n\n try{\n const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get(), hole_detection);\n\n std::ostringstream ss;\n ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\n InvocationMetadata[ParameterKey] = ss.str();\n\n YLOGINFO(\"Stored equivalent square '\" << ss.str() << \"' mm with key '\" << ParameterKey << \"'\");\n return true;\n }catch(const std::invalid_argument &e){\n YLOGWARN(\"Unable to estimate equivalent square: \" << e.what());\n return false;\n }\n''')\np.write_text(s)\nPY",{"_440":712,"_421":422,"_442":428},{"_475":707,"_446":-5,"_477":713,"_93":479},"Chunk ID: 9d5444\nWall time: 0.3871 seconds\nProcess exited with code 0\nOriginal token count: 0\nOutput:\n",{"_440":715,"_421":422,"_442":428},{"_501":716,"_475":707,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"python3 - <<'PY'\\nfrom pathlib import Path\\np=Path('src/Operations/EstimateEquivalentSquare.cc')\\ns=p.read_text().replace('#include //Needed for std::move.\\\\n', '#include //Needed for std::move.\\\\n#include \\\\n')\\ns=s.replace(''' out.args.back().desc = \\\"The key under which the equivalent square will be stored in the global parameter table.\\\";\\n out.args.back().default_val = \\\"EquivalentSquare_mm\\\";\\n out.args.back().expected = true;\\n out.args.back().examples = { \\\"FieldEquivalentSquare\\\", \\\"eqsq_mm\\\" };\\n''',''' out.args.back().desc = \\\"The key under which the equivalent square will be stored in the global parameter table.\\\";\\n out.args.back().default_val = \\\"EquivalentSquare_mm\\\";\\n out.args.back().expected = true;\\n out.args.back().examples = { \\\"FieldEquivalentSquare\\\", \\\"eqsq_mm\\\" };\\n\\n out.args.emplace_back();\\n out.args.back().name = \\\"HoleDetection\\\";\\n out.args.back().desc = \\\"Controls how nested contours are interpreted as holes, islands, and islands with holes.\\\"\\n \\\" 'signed' uses contour signedness/orientation. 'overlap' ignores orientation and alternates\\\"\\n \\\" aperture/hole status by nesting depth (even-odd-even-odd). Non-simple arrangements,\\\"\\n \\\" including self-intersections, contour intersections, and T-intersections, are rejected.\\\";\\n out.args.back().default_val = \\\"signed\\\";\\n out.args.back().expected = true;\\n out.args.back().examples = { \\\"signed\\\", \\\"overlap\\\" };\\n''')\\ns=s.replace(''' const auto ParameterKey = OptArgs.getValueStr(\\\"ParameterKey\\\").value();\\n''',''' const auto ParameterKey = OptArgs.getValueStr(\\\"ParameterKey\\\").value();\\n const auto HoleDetectionStr = OptArgs.getValueStr(\\\"HoleDetection\\\").value();\\n''')\\ns=s.replace(''' const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get());\\n\\n std::ostringstream ss;\\n ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\\n InvocationMetadata[ParameterKey] = ss.str();\\n\\n YLOGINFO(\\\"Stored equivalent square '\\\" << ss.str() << \\\"' mm with key '\\\" << ParameterKey << \\\"'\\\");\\n\\n return true;\\n''',''' const std::regex signed_regex(\\\"signed|orientation|contour_signedness\\\");\\n const std::regex overlap_regex(\\\"overlap|simple_overlap|even_odd|evenodd\\\");\\n EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\\n if(std::regex_match(HoleDetectionStr, signed_regex)){\\n hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation;\\n }else if(std::regex_match(HoleDetectionStr, overlap_regex)){\\n hole_detection = EquivalentSquareHoleDetection::SimpleOverlap;\\n }else{\\n throw std::invalid_argument(\\\"HoleDetection must be 'signed' or 'overlap'\\\");\\n }\\n\\n try{\\n const auto equivalent_square = EstimateEquivalentSquareForContours(cc_ROIs.front().get(), hole_detection);\\n\\n std::ostringstream ss;\\n ss << std::setprecision(std::numeric_limits::max_digits10) << equivalent_square;\\n InvocationMetadata[ParameterKey] = ss.str();\\n\\n YLOGINFO(\\\"Stored equivalent square '\\\" << ss.str() << \\\"' mm with key '\\\" << ParameterKey << \\\"'\\\");\\n return true;\\n }catch(const std::invalid_argument &e){\\n YLOGWARN(\\\"Unable to estimate equivalent square: \\\" << e.what());\\n return false;\\n }\\n''')\\np.write_text(s)\\nPY\"}",{"_440":718,"_421":422,"_442":428},{"_443":-5,"_460":719,"_42":-5,"_446":-5,"_462":720,"_93":464},"gAAAAABqMyJFoTcIC-e-OdhyTcAVUoxPNx0YngYk2RnFDjjjiFTOA7dINQaPchYyjDnvKYJT9ydUk3KK9V6sHxuLUqGqvt0Npx4l7e5_1EPueUCXY7jjwUVAwS76yyALinZrCqhO3rLyko3B5GPPDii1sYVHQzN7s4MaRpxM4uNqhwXeTIbaHEsALmaqMn-IkVtyIMopYNCSEzn0qK4zcs8_xrdB0dU62zhWQ00g9LnfIrgTX9VZnPlcOtaW-lPxRq0bETstaLjzJEm6SrMGLPREz5VJ7En6A7FUo0WV_wWPP3DRNRu7k_sQY94TeuUqhA5brjptVDoAR3SJ999Xw0JE31-A6T6favVqSWMi3JCXkmskpm_VxWmQOkmk4sF12B35MIaQGip-duJ7ahWmIzDLjHddLFk6fag60rOKH0-M0eCiVxeOesqA_ndiO0x3gVBbAMEsGFGLUJrOomz0AT1D2GElYixF196m8XTWoj6Flbi3WtefyAblo7Cu3xYo8JkpQfYQpFcDV99VmKU_D3VuLxn5-r0ZGjUrPgg6WRApoqv1zn2AmKcyf-MKR2m-P050KqmdZ4GmhH0csW41EXzcTLFmnlVQ_v9-FI1Dt2wAhFRYh2hGfT5ooOImQb_Hm33NGxEY0ez0L21ObTF8fafjo5CZZOROGnFU1Ck6CWTe1t82JoIiLXy8VIdhm0eY07W3PKur9Q39UjSNC1wma3XJNJ8I8SMCmpcEnDdnjL9cFzMo_i21vteuWWvnNK6T8CHk7hROxizs3sKEHY0D8iJhbdVZe9ldT6dGh5m9_pOvICLHo_yVqJF1DFWkoxyQkAQ9MC-St5zQ851v1YAJmfeAY6QDcbR80BUgympjoOAukVciSYm2xRknW6xU1oyuAbJMC4xt_nP8Zu3yid686NVlyhtBzHvKZDlA8ImK1XuQs-6OxPAeprv_DMCaGWWmvxteDJyxVDD2NKxWMi6fbEItIUPQXR7T1g==",[],{"_440":722,"_421":422,"_442":428},{"_443":723,"_42":724,"_462":725,"_93":464},[],"rs_0db9a5c18f3fd3b6016a3322456db8819ab67d5cd7744d9ac7",[],{"_440":727,"_421":422,"_442":428},{"_475":728,"_446":-5,"_477":729,"_93":479},"call_lKIWpNgpvpnTXOFXGVjorwaL","Chunk ID: f3db82\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 629\nOutput:\nsrc/Operations/EstimateEquivalentSquare.cc: for(const auto &p : c.points) out.push_back({p.x, p.y});\nsrc/Operations/EstimateEquivalentSquare.cc: return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\nsrc/Operations/EstimateEquivalentSquare.cc: return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\nsrc/Operations/EstimateEquivalentSquare.cc: return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\nsrc/Operations/EstimateEquivalentSquare.cc: && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\nsrc/Operations/EstimateEquivalentSquare.cc: const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\nsrc/Operations/EstimateEquivalentSquare.cc: && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\nsrc/Sketch_Extrude.cc: return Sketch::projection_t{ point.x, point.y };\nsrc/Sketch_Extrude.cc: const auto ax = static_cast(a.x);\nsrc/Sketch_Extrude.cc: const auto ay = static_cast(a.y);\nsrc/Sketch_Extrude.cc: const auto bx = static_cast(b.x);\nsrc/Sketch_Extrude.cc: const auto by = static_cast(b.y);\nsrc/Sketch_Extrude.cc: double min_x = loop.front().x;\nsrc/Sketch_Extrude.cc: double max_x = loop.front().x;\nsrc/Sketch_Extrude.cc: double min_y = loop.front().y;\nsrc/Sketch_Extrude.cc: double max_y = loop.front().y;\nsrc/Sketch_Extrude.cc: min_x = std::min(min_x, point.x);\nsrc/Sketch_Extrude.cc: max_x = std::max(max_x, point.x);\nsrc/Sketch_Extrude.cc: min_y = std::min(min_y, point.y);\nsrc/Sketch_Extrude.cc: max_y = std::max(max_y, point.y);\nsrc/Sketch_Extrude.cc: inward = vec2(-edge.y, edge.x);\nsrc/Sketch_Extrude.cc: inward = vec2(edge.y, -edge.x);\nsrc/Sketch_Extrude.cc: if(std::abs(b.y - a.y) <= tolerance) continue;\nsrc/Sketch_Extrude.cc: const bool intersects = ((a.y > p.y) != (b.y > p.y))\nsrc/Sketch_Extrude.cc: && (p.x < ((b.x - a.x) * (p.y - a.y) / (b.y - a.y)) + a.x);\nsrc/Sketch_Extrude.cc: if(a.y <= p.y){\nsrc/Sketch_Extrude.cc: if((b.y > p.y) && (orient_sign(a, b, p) > 0)){\nsrc/Sketch_Extrude.cc: }else if((b.y <= p.y) && (orient_sign(a, b, p) < 0)){\nsrc/Sketch_Extrude.cc: double min_x = cap_vertices_2d.front().x;\nsrc/Sketch_Extrude.cc: double max_x = cap_vertices_2d.front().x;\n",{"_440":731,"_421":422,"_442":428},{"_482":732,"_484":733,"_486":734,"_488":489,"_426":32,"_490":32,"_42":728,"_491":735,"_493":494,"_433":114,"_93":495},"src/Operations/EstimateEquivalentSquare.cc: for(const auto &p : c.points) out.push_back({p.x, p.y});\nsrc/Operations/EstimateEquivalentSquare.cc: return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\nsrc/Operations/EstimateEquivalentSquare.cc: return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\nsrc/Operations/EstimateEquivalentSquare.cc: return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\nsrc/Operations/EstimateEquivalentSquare.cc: && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\nsrc/Operations/EstimateEquivalentSquare.cc: const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\nsrc/Operations/EstimateEquivalentSquare.cc: && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\nsrc/Sketch_Extrude.cc: return Sketch::projection_t{ point.x, point.y };\nsrc/Sketch_Extrude.cc: const auto ax = static_cast(a.x);\nsrc/Sketch_Extrude.cc: const auto ay = static_cast(a.y);\nsrc/Sketch_Extrude.cc: const auto bx = static_cast(b.x);\nsrc/Sketch_Extrude.cc: const auto by = static_cast(b.y);\nsrc/Sketch_Extrude.cc: double min_x = loop.front().x;\nsrc/Sketch_Extrude.cc: double max_x = loop.front().x;\nsrc/Sketch_Extrude.cc: double min_y = loop.front().y;\nsrc/Sketch_Extrude.cc: double max_y = loop.front().y;\nsrc/Sketch_Extrude.cc: min_x = std::min(min_x, point.x);\nsrc/Sketch_Extrude.cc: max_x = std::max(max_x, point.x);\nsrc/Sketch_Extrude.cc: min_y = std::min(min_y, point.y);\nsrc/Sketch_Extrude.cc: max_y = std::max(max_y, point.y);\nsrc/Sketch_Extrude.cc: inward = vec2(-edge.y, edge.x);\nsrc/Sketch_Extrude.cc: inward = vec2(edge.y, -edge.x);\nsrc/Sketch_Extrude.cc: if(std::abs(b.y - a.y) <= tolerance) continue;\nsrc/Sketch_Extrude.cc: const bool intersects = ((a.y > p.y) != (b.y > p.y))\nsrc/Sketch_Extrude.cc: && (p.x < ((b.x - a.x) * (p.y - a.y) / (b.y - a.y)) + a.x);\nsrc/Sketch_Extrude.cc: if(a.y <= p.y){\nsrc/Sketch_Extrude.cc: if((b.y > p.y) && (orient_sign(a, b, p) > 0)){\nsrc/Sketch_Extrude.cc: }else if((b.y <= p.y) && (orient_sign(a, b, p) < 0)){\nsrc/Sketch_Extrude.cc: double min_x = cap_vertices_2d.front().x;\nsrc/Sketch_Extrude.cc: double max_x = cap_vertices_2d.front().x;\n","/bin/bash -lc \"rg \\\"\\\\.x\\\\b|\\\\.y\\\\b|\\\\[0\\\\]\\\" src/Operations/EstimateEquivalentSquare.cc src/Sketch_Extrude.cc | head -30\"",[736],"71600",{"_484":737,"_167":669,"_738":739,"_93":740},"rg \"\\\\.x\\\\b|\\\\.y\\\\b|\\\\[0\\\\]\" src/Operations/EstimateEquivalentSquare.cc src/Sketch_Extrude.cc","query","\\.x\\b|\\.y\\b|\\[0\\]","search",{"_440":742,"_421":422,"_442":428},{"_501":743,"_475":728,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"rg \\\"\\\\.x\\\\b|\\\\.y\\\\b|\\\\[0\\\\]\\\" src/Operations/EstimateEquivalentSquare.cc src/Sketch_Extrude.cc | head -30\"}",{"_440":745,"_421":422,"_442":428},{"_443":-5,"_460":746,"_42":-5,"_446":-5,"_462":747,"_93":464},"gAAAAABqMyJEB9DrHWXfACyWoB6Snkhp6Gaw-t45VLLrkxaMjH6FTw8WkkzvykK0Thbc2mmFSDufbZmeL0PHDdLgUy-_BT6apUYrdKlE79F_vGYqQNslVAkISaPJXiDE4_KSzdYNvlyc78YEfGKlfVl4xPhhGhAZfkBcTlKLaOjw4BzMj1y-D5XbR9skvRE5ltcnWSeZhOQjuQcNb7-G0BwbR-jaIyMLUqyAtkJr_iwWG-CuYyO3sabtU18QEHK9qTK652C0BQ4HKb0qbqae-UC0MrQmVcB90-i4CtHei6Qg_tYKRvnjUs7aYMEDc-WOa8FOZb6UeoXCalh51vdEU3_NLiTzBrA9eOkCg0SCKMac_HXIdFzBG7jQ0IX3nRTq3V43YAZ3sP7edclCpEFz1MfEl8f1CK64U2BwNiD3a1x5EC4HIbt9THHdvub2oc_Pz-xMDQKKp9eD5H5lyAs7Lv4I_DX8Ny4o3m7kMtjCZst5x2tXEAj8ozxII8xl4EUAqT9-KtAk-jXffXYKEhw_ghipj6D9fB0E-_BLdClozO5h7FpXRGHtn_ImLBQbNt8ZRv5664IAtnmj8fwYo-pn6-_-V5KI_FwkxqupKZz4kVNRo3gb94xvjwLYwKVoVRqG9fpUG_9Jw9HXepHtNRPwm_yXz5G6C8v1UsLdFAVqjEOTnM2rqalVErHgFqXG18Er-DU1pNC5f17tWv6sPCf8p3fJUOBbgMWGPFRf5ylHPZAflXXeaiei93i6Sez5BeJ1RnqP2SQppazo_Sa5rp_UAZN9VwEoQK5pDzg3YfmXQx80q-zvb63kUbv8umo0ses_HeNdW4wizJ-eQgZVWweiu5UcNpceEx_BnK6JK_ViDQDGeYOGE2WZ8LxgK50O6L2DiLSE_Eh-HHn6SwznFAU-0GEHeAKn_hDzkzynGdYTNGp3Ci4Bbjw3j1KKQi1AVv0B-2OBhm7CrvWEnKPB-m3G1uy-NEKKYs5rJd2EFAED1uaIlL8eqmLVX6xmvTvpSNLhn6YDX7KBn8TS",[748],{"_46":749,"_93":467},"**Checking vector details**\n\nI need to consider if I should include a vector and whether the vec3 fields should include something like x. I'll also check the naming conventions used by Ygor for vec3, just to ensure consistency and clarity. It seems important to evaluate the structure properly, and getting those details right could be crucial for whatever I'm working on! Let's see if there's anything specific I need to clarify!",{"_440":751,"_421":422,"_442":428},{"_443":752,"_42":753,"_462":754,"_93":464},[],"rs_0db9a5c18f3fd3b6016a3322428338819abef2f792a6688bc5",[749],{"_440":756,"_421":422,"_442":428},{"_482":-5,"_484":757,"_486":758,"_488":489,"_426":759,"_490":32,"_42":760,"_491":761,"_493":494,"_433":114,"_93":495},"/bin/bash -lc \"python3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.cc')\ns=p.read_text()\ns=s.replace('#include \\\\n', '#include \\\\n#include \\\\n')\ns=s.replace('#include \\\\n', '#include \\\\n#include \\\\n')\nstart=s.index('double EstimateEquivalentSquareForContours')\nend=s.index('\\\\nOperationDoc OpArgDocEstimateEquivalentSquare')\nnew=r'''\nnamespace {\nconstexpr double contour_eps = 1.0e-8;\n\nstruct point2 {\n double x = 0.0;\n double y = 0.0;\n};\n\nstd::vector contour_points_2d(const contour_of_points &c){\n std::vector out;\n out.reserve(c.points.size());\n for(const auto &p : c.points) out.push_back({p.x, p.y});\n return out;\n}\n\ndouble orient(const point2 &a, const point2 &b, const point2 &c){\n return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n}\n\nbool points_same(const point2 &a, const point2 &b){\n return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\n}\n\nbool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n if(std::abs(orient(a, b, p)) > contour_eps) return false;\n return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n}\n\nbool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n const auto o1 = orient(a, b, c);\n const auto o2 = orient(a, b, d);\n const auto o3 = orient(c, d, a);\n const auto o4 = orient(c, d, b);\n if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n return true;\n }\n return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n}\n\nbool point_in_contour(const point2 &p, const contour_of_points &c){\n const auto pts = contour_points_2d(c);\n bool inside = false;\n for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n if(point_on_segment(p, pts[j], pts[i])) return true;\n const bool crosses = ((pts[i].y > p.y) \"'!= (pts[j].y > p.y))\n && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n if(crosses) inside = !inside;\n }\n return inside;\n}\n}\n\nbool ContourHasSelfIntersection(const contour_of_points &c){\n const auto pts = contour_points_2d(c);\n if(pts.size() < 3U) return true;\n for(size_t i = 0U; i < pts.size(); ++i){\n const auto in = (i + 1U) % pts.size();\n for(size_t j = i + 1U; j < pts.size(); ++j){\n const auto jn = (j + 1U) % pts.size();\n const bool adjacent = (i == j) || (in == j) || (jn == i);\n if(adjacent) continue;\n if(segments_intersect_or_touch(pts[i], pts[in], pts[j], pts[jn])) return true;\n }\n }\n return false;\n}\n\nbool ContourCollectionsHaveIntersections(const contour_collection &cc){\n for(auto a_it = cc.contours.begin(); a_it != cc.contours.end(); ++a_it){\n const auto a_pts = contour_points_2d(*a_it);\n auto b_it = a_it;\n for(++b_it; b_it != cc.contours.end(); ++b_it){\n const auto b_pts = contour_points_2d(*b_it);\n for(size_t i = 0U; i < a_pts.size(); ++i){\n const auto in = (i + 1U) % a_pts.size();\n for(size_t j = 0U; j < b_pts.size(); ++j){\n const auto jn = (j + 1U) % b_pts.size();\n if(segments_intersect_or_touch(a_pts[i], a_pts[in], b_pts[j], b_pts[jn])) return true;\n }\n }\n }\n }\n return false;\n}\n\nbool ContourCollectionIsSimpleNested(const contour_collection &cc){\n for(const auto &c : cc.contours){\n if(!c.closed || (c.points.size() < 3U) || ContourHasSelfIntersection(c)) return false;\n }\n return !ContourCollectionsHaveIntersections(cc);\n}\n\ndouble EstimateEquivalentSquareForContours(const contour_collection &cc,\n const EquivalentSquareHoleDetection hole_detection){\n if(!ContourCollectionIsSimpleNested(cc)){\n throw std::invalid_argument(\"Non-simple contour arrangement encountered; contours must be closed, non-self-intersecting, and non-intersecting\");\n }\n\n double area = 0.0;\n double perimeter = 0.0;\n\n for(auto c_it = cc.contours.begin(); c_it != cc.contours.end(); ++c_it){\n const auto signed_area = c_it->Get_Signed_Area(true);\n const auto abs_area = std::abs(signed_area);\n const auto c_perimeter = c_it->Perimeter();\n if(!std::isfinite(signed_area) || !std::isfinite(c_perimeter)){\n throw std::invalid_argument(\"Encountered non-finite contour area or perimeter\");\n }\n if(abs_area <= 0.0 || c_perimeter <= 0.0){\n throw std::invalid_argument(\"Encountered degenerate contour with non-positive area or perimeter\");\n }\n\n if(hole_detection == EquivalentSquareHoleDetection::SignedContourOrientation){\n area += signed_area;\n }else{\n size_t containing_contours = 0U;\n const auto probe = contour_points_2d(*c_it).front();\n for(auto other_it = cc.contours.begin(); other_it != cc.contours.end(); ++other_it){\n if(other_it == c_it) continue;\n if(point_in_contour(probe, *other_it)) ++containing_contours;\n }\n area += ((containing_contours % 2U) == 0U) ? abs_area : -abs_area;\n }\n perimeter += c_perimeter;\n }\n\n area = std::abs(area);\n if(area <= 0.0 || perimeter <= 0.0){\n throw std::invalid_argument(\"No valid contour aperture was available\");\n }\n\n return 4.0 * area / perimeter;\n}\n'\"'''\ns=s[:start]+new+s[end:]\np.write_text(s)\nPY\"",[762],511,"call_8vryksuYnAM6lmK1FmfDW4PL","85420",{"_484":763,"_93":498},"python3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.cc')\ns=p.read_text()\ns=s.replace('#include \\n', '#include \\n#include \\n')\ns=s.replace('#include \\n', '#include \\n#include \\n')\nstart=s.index('double EstimateEquivalentSquareForContours')\nend=s.index('\\nOperationDoc OpArgDocEstimateEquivalentSquare')\nnew=r'''\nnamespace {\nconstexpr double contour_eps = 1.0e-8;\n\nstruct point2 {\n double x = 0.0;\n double y = 0.0;\n};\n\nstd::vector contour_points_2d(const contour_of_points &c){\n std::vector out;\n out.reserve(c.points.size());\n for(const auto &p : c.points) out.push_back({p.x, p.y});\n return out;\n}\n\ndouble orient(const point2 &a, const point2 &b, const point2 &c){\n return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\n}\n\nbool points_same(const point2 &a, const point2 &b){\n return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\n}\n\nbool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\n if(std::abs(orient(a, b, p)) > contour_eps) return false;\n return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\n && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\n}\n\nbool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\n const auto o1 = orient(a, b, c);\n const auto o2 = orient(a, b, d);\n const auto o3 = orient(c, d, a);\n const auto o4 = orient(c, d, b);\n if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\n && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\n return true;\n }\n return point_on_segment(c, a, b) || point_on_segment(d, a, b)\n || point_on_segment(a, c, d) || point_on_segment(b, c, d);\n}\n\nbool point_in_contour(const point2 &p, const contour_of_points &c){\n const auto pts = contour_points_2d(c);\n bool inside = false;\n for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\n if(point_on_segment(p, pts[j], pts[i])) return true;\n const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\n && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\n if(crosses) inside = !inside;\n }\n return inside;\n}\n}\n\nbool ContourHasSelfIntersection(const contour_of_points &c){\n const auto pts = contour_points_2d(c);\n if(pts.size() < 3U) return true;\n for(size_t i = 0U; i < pts.size(); ++i){\n const auto in = (i + 1U) % pts.size();\n for(size_t j = i + 1U; j < pts.size(); ++j){\n const auto jn = (j + 1U) % pts.size();\n const bool adjacent = (i == j) || (in == j) || (jn == i);\n if(adjacent) continue;\n if(segments_intersect_or_touch(pts[i], pts[in], pts[j], pts[jn])) return true;\n }\n }\n return false;\n}\n\nbool ContourCollectionsHaveIntersections(const contour_collection &cc){\n for(auto a_it = cc.contours.begin(); a_it != cc.contours.end(); ++a_it){\n const auto a_pts = contour_points_2d(*a_it);\n auto b_it = a_it;\n for(++b_it; b_it != cc.contours.end(); ++b_it){\n const auto b_pts = contour_points_2d(*b_it);\n for(size_t i = 0U; i < a_pts.size(); ++i){\n const auto in = (i + 1U) % a_pts.size();\n for(size_t j = 0U; j < b_pts.size(); ++j){\n const auto jn = (j + 1U) % b_pts.size();\n if(segments_intersect_or_touch(a_pts[i], a_pts[in], b_pts[j], b_pts[jn])) return true;\n }\n }\n }\n }\n return false;\n}\n\nbool ContourCollectionIsSimpleNested(const contour_collection &cc){\n for(const auto &c : cc.contours){\n if(!c.closed || (c.points.size() < 3U) || ContourHasSelfIntersection(c)) return false;\n }\n return !ContourCollectionsHaveIntersections(cc);\n}\n\ndouble EstimateEquivalentSquareForContours(const contour_collection &cc,\n const EquivalentSquareHoleDetection hole_detection){\n if(!ContourCollectionIsSimpleNested(cc)){\n throw std::invalid_argument(\"Non-simple contour arrangement encountered; contours must be closed, non-self-intersecting, and non-intersecting\");\n }\n\n double area = 0.0;\n double perimeter = 0.0;\n\n for(auto c_it = cc.contours.begin(); c_it != cc.contours.end(); ++c_it){\n const auto signed_area = c_it->Get_Signed_Area(true);\n const auto abs_area = std::abs(signed_area);\n const auto c_perimeter = c_it->Perimeter();\n if(!std::isfinite(signed_area) || !std::isfinite(c_perimeter)){\n throw std::invalid_argument(\"Encountered non-finite contour area or perimeter\");\n }\n if(abs_area <= 0.0 || c_perimeter <= 0.0){\n throw std::invalid_argument(\"Encountered degenerate contour with non-positive area or perimeter\");\n }\n\n if(hole_detection == EquivalentSquareHoleDetection::SignedContourOrientation){\n area += signed_area;\n }else{\n size_t containing_contours = 0U;\n const auto probe = contour_points_2d(*c_it).front();\n for(auto other_it = cc.contours.begin(); other_it != cc.contours.end(); ++other_it){\n if(other_it == c_it) continue;\n if(point_in_contour(probe, *other_it)) ++containing_contours;\n }\n area += ((containing_contours % 2U) == 0U) ? abs_area : -abs_area;\n }\n perimeter += c_perimeter;\n }\n\n area = std::abs(area);\n if(area <= 0.0 || perimeter <= 0.0){\n throw std::invalid_argument(\"No valid contour aperture was available\");\n }\n\n return 4.0 * area / perimeter;\n}\n'''\ns=s[:start]+new+s[end:]\np.write_text(s)\nPY",{"_440":765,"_421":422,"_442":428},{"_475":760,"_446":-5,"_477":766,"_93":479},"Chunk ID: 5dc393\nWall time: 0.4098 seconds\nProcess exited with code 0\nOriginal token count: 0\nOutput:\n",{"_440":768,"_421":422,"_442":428},{"_501":769,"_475":760,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"python3 - <<'PY'\\nfrom pathlib import Path\\np=Path('src/Operations/EstimateEquivalentSquare.cc')\\ns=p.read_text()\\ns=s.replace('#include \\\\n', '#include \\\\n#include \\\\n')\\ns=s.replace('#include \\\\n', '#include \\\\n#include \\\\n')\\nstart=s.index('double EstimateEquivalentSquareForContours')\\nend=s.index('\\\\nOperationDoc OpArgDocEstimateEquivalentSquare')\\nnew=r'''\\nnamespace {\\nconstexpr double contour_eps = 1.0e-8;\\n\\nstruct point2 {\\n double x = 0.0;\\n double y = 0.0;\\n};\\n\\nstd::vector contour_points_2d(const contour_of_points &c){\\n std::vector out;\\n out.reserve(c.points.size());\\n for(const auto &p : c.points) out.push_back({p.x, p.y});\\n return out;\\n}\\n\\ndouble orient(const point2 &a, const point2 &b, const point2 &c){\\n return (b.x - a.x) * (c.y - a.y) - (b.y - a.y) * (c.x - a.x);\\n}\\n\\nbool points_same(const point2 &a, const point2 &b){\\n return (std::abs(a.x - b.x) <= contour_eps) && (std::abs(a.y - b.y) <= contour_eps);\\n}\\n\\nbool point_on_segment(const point2 &p, const point2 &a, const point2 &b){\\n if(std::abs(orient(a, b, p)) > contour_eps) return false;\\n return (std::min(a.x, b.x) - contour_eps <= p.x) && (p.x <= std::max(a.x, b.x) + contour_eps)\\n && (std::min(a.y, b.y) - contour_eps <= p.y) && (p.y <= std::max(a.y, b.y) + contour_eps);\\n}\\n\\nbool segments_intersect_or_touch(const point2 &a, const point2 &b, const point2 &c, const point2 &d){\\n const auto o1 = orient(a, b, c);\\n const auto o2 = orient(a, b, d);\\n const auto o3 = orient(c, d, a);\\n const auto o4 = orient(c, d, b);\\n if(((o1 > contour_eps && o2 < -contour_eps) || (o1 < -contour_eps && o2 > contour_eps))\\n && ((o3 > contour_eps && o4 < -contour_eps) || (o3 < -contour_eps && o4 > contour_eps))){\\n return true;\\n }\\n return point_on_segment(c, a, b) || point_on_segment(d, a, b)\\n || point_on_segment(a, c, d) || point_on_segment(b, c, d);\\n}\\n\\nbool point_in_contour(const point2 &p, const contour_of_points &c){\\n const auto pts = contour_points_2d(c);\\n bool inside = false;\\n for(size_t i = 0U, j = pts.size() - 1U; i < pts.size(); j = i++){\\n if(point_on_segment(p, pts[j], pts[i])) return true;\\n const bool crosses = ((pts[i].y > p.y) != (pts[j].y > p.y))\\n && (p.x < (pts[j].x - pts[i].x) * (p.y - pts[i].y) / (pts[j].y - pts[i].y) + pts[i].x);\\n if(crosses) inside = !inside;\\n }\\n return inside;\\n}\\n}\\n\\nbool ContourHasSelfIntersection(const contour_of_points &c){\\n const auto pts = contour_points_2d(c);\\n if(pts.size() < 3U) return true;\\n for(size_t i = 0U; i < pts.size(); ++i){\\n const auto in = (i + 1U) % pts.size();\\n for(size_t j = i + 1U; j < pts.size(); ++j){\\n const auto jn = (j + 1U) % pts.size();\\n const bool adjacent = (i == j) || (in == j) || (jn == i);\\n if(adjacent) continue;\\n if(segments_intersect_or_touch(pts[i], pts[in], pts[j], pts[jn])) return true;\\n }\\n }\\n return false;\\n}\\n\\nbool ContourCollectionsHaveIntersections(const contour_collection &cc){\\n for(auto a_it = cc.contours.begin(); a_it != cc.contours.end(); ++a_it){\\n const auto a_pts = contour_points_2d(*a_it);\\n auto b_it = a_it;\\n for(++b_it; b_it != cc.contours.end(); ++b_it){\\n const auto b_pts = contour_points_2d(*b_it);\\n for(size_t i = 0U; i < a_pts.size(); ++i){\\n const auto in = (i + 1U) % a_pts.size();\\n for(size_t j = 0U; j < b_pts.size(); ++j){\\n const auto jn = (j + 1U) % b_pts.size();\\n if(segments_intersect_or_touch(a_pts[i], a_pts[in], b_pts[j], b_pts[jn])) return true;\\n }\\n }\\n }\\n }\\n return false;\\n}\\n\\nbool ContourCollectionIsSimpleNested(const contour_collection &cc){\\n for(const auto &c : cc.contours){\\n if(!c.closed || (c.points.size() < 3U) || ContourHasSelfIntersection(c)) return false;\\n }\\n return !ContourCollectionsHaveIntersections(cc);\\n}\\n\\ndouble EstimateEquivalentSquareForContours(const contour_collection &cc,\\n const EquivalentSquareHoleDetection hole_detection){\\n if(!ContourCollectionIsSimpleNested(cc)){\\n throw std::invalid_argument(\\\"Non-simple contour arrangement encountered; contours must be closed, non-self-intersecting, and non-intersecting\\\");\\n }\\n\\n double area = 0.0;\\n double perimeter = 0.0;\\n\\n for(auto c_it = cc.contours.begin(); c_it != cc.contours.end(); ++c_it){\\n const auto signed_area = c_it->Get_Signed_Area(true);\\n const auto abs_area = std::abs(signed_area);\\n const auto c_perimeter = c_it->Perimeter();\\n if(!std::isfinite(signed_area) || !std::isfinite(c_perimeter)){\\n throw std::invalid_argument(\\\"Encountered non-finite contour area or perimeter\\\");\\n }\\n if(abs_area <= 0.0 || c_perimeter <= 0.0){\\n throw std::invalid_argument(\\\"Encountered degenerate contour with non-positive area or perimeter\\\");\\n }\\n\\n if(hole_detection == EquivalentSquareHoleDetection::SignedContourOrientation){\\n area += signed_area;\\n }else{\\n size_t containing_contours = 0U;\\n const auto probe = contour_points_2d(*c_it).front();\\n for(auto other_it = cc.contours.begin(); other_it != cc.contours.end(); ++other_it){\\n if(other_it == c_it) continue;\\n if(point_in_contour(probe, *other_it)) ++containing_contours;\\n }\\n area += ((containing_contours % 2U) == 0U) ? abs_area : -abs_area;\\n }\\n perimeter += c_perimeter;\\n }\\n\\n area = std::abs(area);\\n if(area <= 0.0 || perimeter <= 0.0){\\n throw std::invalid_argument(\\\"No valid contour aperture was available\\\");\\n }\\n\\n return 4.0 * area / perimeter;\\n}\\n'''\\ns=s[:start]+new+s[end:]\\np.write_text(s)\\nPY\"}",{"_440":771,"_421":422,"_442":428},{"_482":772,"_484":773,"_486":774,"_488":489,"_426":775,"_490":32,"_42":776,"_491":777,"_493":494,"_433":114,"_93":495},"// EstimateEquivalentSquare.h.\n\n#pragma once\n\n#include \n#include \n\n#include \"../Structs.h\"\n\n\nenum class EquivalentSquareHoleDetection {\n SignedContourOrientation,\n SimpleOverlap,\n};\n\nbool ContourHasSelfIntersection(const contour_of_points &c);\nbool ContourCollectionsHaveIntersections(const contour_collection &cc);\nbool ContourCollectionIsSimpleNested(const contour_collection &cc);\n\ndouble EstimateEquivalentSquareForContours(\n const contour_collection &cc,\n EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation);\n\nOperationDoc OpArgDocEstimateEquivalentSquare();\n\nbool EstimateEquivalentSquare(Drover &DICOM_data,\n const OperationArgPkg& /*OptArgs*/,\n std::map& /*InvocationMetadata*/,\n const std::string& /*FilenameLex*/);\n","/bin/bash -lc \"python3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.h')\ns=p.read_text()\ns=s.replace('double EstimateEquivalentSquareForContours(const contour_collection &cc);', '''enum class EquivalentSquareHoleDetection {\n SignedContourOrientation,\n SimpleOverlap,\n};\n\nbool ContourHasSelfIntersection(const contour_of_points &c);\nbool ContourCollectionsHaveIntersections(const contour_collection &cc);\nbool ContourCollectionIsSimpleNested(const contour_collection &cc);\n\ndouble EstimateEquivalentSquareForContours(\n const contour_collection &cc,\n EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation);''')\np.write_text(s)\nPY\nsed -n '1,80p' src/Operations/EstimateEquivalentSquare.h\"",[778],486,"call_VtiAQe7Ysa4urNf7TWIeXfwP","2904",{"_484":779,"_93":498},"python3 - <<'PY'\nfrom pathlib import Path\np=Path('src/Operations/EstimateEquivalentSquare.h')\ns=p.read_text()\ns=s.replace('double EstimateEquivalentSquareForContours(const contour_collection &cc);', '''enum class EquivalentSquareHoleDetection {\n SignedContourOrientation,\n SimpleOverlap,\n};\n\nbool ContourHasSelfIntersection(const contour_of_points &c);\nbool ContourCollectionsHaveIntersections(const contour_collection &cc);\nbool ContourCollectionIsSimpleNested(const contour_collection &cc);\n\ndouble EstimateEquivalentSquareForContours(\n const contour_collection &cc,\n EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation);''')\np.write_text(s)\nPY\nsed -n '1,80p' src/Operations/EstimateEquivalentSquare.h",{"_440":781,"_421":422,"_442":428},{"_475":776,"_446":-5,"_477":782,"_93":479},"Chunk ID: f97a7b\nWall time: 0.3857 seconds\nProcess exited with code 0\nOriginal token count: 237\nOutput:\n// EstimateEquivalentSquare.h.\n\n#pragma once\n\n#include \n#include \n\n#include \"../Structs.h\"\n\n\nenum class EquivalentSquareHoleDetection {\n SignedContourOrientation,\n SimpleOverlap,\n};\n\nbool ContourHasSelfIntersection(const contour_of_points &c);\nbool ContourCollectionsHaveIntersections(const contour_collection &cc);\nbool ContourCollectionIsSimpleNested(const contour_collection &cc);\n\ndouble EstimateEquivalentSquareForContours(\n const contour_collection &cc,\n EquivalentSquareHoleDetection hole_detection = EquivalentSquareHoleDetection::SignedContourOrientation);\n\nOperationDoc OpArgDocEstimateEquivalentSquare();\n\nbool EstimateEquivalentSquare(Drover &DICOM_data,\n const OperationArgPkg& /*OptArgs*/,\n std::map& /*InvocationMetadata*/,\n const std::string& /*FilenameLex*/);\n",{"_440":784,"_421":422,"_442":428},{"_501":785,"_475":776,"_42":-5,"_446":-5,"_194":503,"_504":-5,"_93":505},"{\"cmd\":\"python3 - <<'PY'\\nfrom pathlib import Path\\np=Path('src/Operations/EstimateEquivalentSquare.h')\\ns=p.read_text()\\ns=s.replace('double EstimateEquivalentSquareForContours(const contour_collection &cc);', '''enum class EquivalentSquareHoleDetection {\\n SignedContourOrientation,\\n SimpleOverlap,\\n};\\n\\nbool ContourHasSelfIntersection(const contour_of_points &c);\\nbool ContourCollectionsHaveIntersections(const contour_collection &cc);\\nbool ContourCollectionIsSimpleNested(const contour_collection