ℹ️ About Codex in GitHub

\\n
\\n\\n[Your team has set up Codex to review pull requests in this repo](https://chatgpt.com/codex/cloud/settings/general). Reviews are triggered when you\\n- Open a pull request for review\\n- Mark a draft as ready\\n- Comment \\\"@codex review\\\".\\n\\nIf Codex has suggestions, it will comment; otherwise it will react with 👍.\\n\\n\\n\\n\\nCodex can also answer questions or update the PR. Try commenting \\\"@codex address that feedback\\\".\\n \\n

\",\"path\":null,\"side\":null,\"line\":null}","text_elements",[],{"_471":895,"_452":453,"_473":459},{"_474":896,"_476":-5,"_42":-5,"_477":-5,"_478":-5,"_97":355,"_93":480},[897],{"_46":891,"_93":898},"input_text",{"_471":900,"_452":453,"_473":459},{"_474":901,"_476":-5,"_42":-5,"_477":-5,"_478":-5,"_97":355,"_93":480},[902],{"_46":903,"_93":898},"\n /workspace/DICOMautomaton\n bash\n 2026-06-18\n Etc/UTC\n",{"_471":905,"_452":453,"_473":459},{"_474":906,"_476":-5,"_42":-5,"_477":-5,"_478":-5,"_97":907,"_93":480},[908,909],"developer",{"_46":911,"_93":898},{"_46":910,"_93":898},"\n## Skills\nA skill is a set of local instructions to follow that is stored in a `SKILL.md` file. Below is the list of skills that can be used. Each entry includes a name, description, and file path so you can open the source for full instructions when using a specific skill.\n### Available skills\n- imagegen: Generate or edit raster images when the task benefits from AI-created bitmap visuals such as photos, illustrations, textures, sprites, mockups, or transparent-background cutouts. Use when Codex should create a brand-new image, transform an existing image, or derive visual variants from references, and the output should be a bitmap asset rather than repo-native code or vector. Do not use when the task is better handled by editing existing SVG/vector/code-native assets, extending an established icon or logo system, or building the visual directly in HTML/CSS/canvas. (file: /opt/codex/skills/.system/imagegen/SKILL.md)\n- openai-docs: Use when the user asks how to build with OpenAI products or APIs and needs up-to-date official documentation with citations, help choosing the latest model for a use case, or model upgrade and prompt-upgrade guidance; prioritize OpenAI docs MCP tools, use bundled references only as helper context, and restrict any fallback browsing to official OpenAI domains. (file: /opt/codex/skills/.system/openai-docs/SKILL.md)\n- plugin-creator: Create and scaffold plugin directories for Codex with a required `.codex-plugin/plugin.json`, optional plugin folders/files, and baseline placeholders you can edit before publishing or testing. Use when Codex needs to create a new local plugin, add optional plugin structure, or generate or update repo-root `.agents/plugins/marketplace.json` entries for plugin ordering and availability metadata. (file: /opt/codex/skills/.system/plugin-creator/SKILL.md)\n- skill-creator: Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations. (file: /opt/codex/skills/.system/skill-creator/SKILL.md)\n- skill-installer: Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos). (file: /opt/codex/skills/.system/skill-installer/SKILL.md)\n### How to use skills\n- Discovery: The list above is the skills available in this session (name + description + file path). Skill bodies live on disk at the listed paths.\n- Trigger rules: If the user names a skill (with `$SkillName` or plain text) OR the task clearly matches a skill's description shown above, you must use that skill for that turn. Multiple mentions mean use them all. Do not carry skills across turns unless re-mentioned.\n- Missing/blocked: If a named skill isn't in the list or the path can't be read, say so briefly and continue with the best fallback.\n- How to use a skill (progressive disclosure):\n 1) After deciding to use a skill, open its `SKILL.md`. Read only enough to follow the workflow.\n 2) When `SKILL.md` references relative paths (e.g., `scripts/foo.py`), resolve them relative to the skill directory listed above first, and only consider other paths if needed.\n 3) If `SKILL.md` points to extra folders such as `references/`, load only the specific files needed for the request; don't bulk-load everything.\n 4) If `scripts/` exist, prefer running or patching them instead of retyping large code blocks.\n 5) If `assets/` or templates exist, reuse them instead of recreating from scratch.\n- Coordination and sequencing:\n - If multiple skills apply, choose the minimal set that covers the request and state the order you'll use them.\n - Announce which skill(s) you're using and why (one short line). If you skip an obvious skill, say why.\n- Context hygiene:\n - Keep context small: summarize long sections instead of pasting them; only load extra files when needed.\n - Avoid deep reference-chasing: prefer opening only files directly linked from `SKILL.md` unless you're blocked.\n - When variants exist (frameworks, providers, domains), pick only the relevant reference file(s) and note that choice.\n- Safety and fallback: If a skill can't be applied cleanly (missing files, unclear instructions), state the issue, pick the next-best approach, and continue.\n","\nFilesystem sandboxing defines which files can be read or written. `sandbox_mode` is `danger-full-access`: No filesystem sandboxing - all commands are permitted. Network access is enabled.\nApproval policy is currently never. Do not provide the `sandbox_permissions` for any reason, commands will be rejected.\n","turn/started",{"_452":453,"_88":914},{"_104":-5,"_42":459,"_460":915,"_462":463,"_464":916},[],"inProgress",{"_464":918,"_452":453},{"_919":920,"_93":921},"activeFlags",[],"active","thread/started",{"_924":925},"thread",{"_926":-5,"_927":-5,"_928":929,"_930":463,"_504":505,"_931":15,"_932":-5,"_933":-5,"_42":453,"_934":935,"_227":-5,"_936":-5,"_181":937,"_938":245,"_509":939,"_464":940,"_941":-5,"_78":942,"_943":463},"agentNickname","agentRole","cliVersion","0.128.0","createdAt","ephemeral","forkedFromId","gitInfo","modelProvider","openai","parentThreadId","/opt/codex/sessions/2026/06/18/rollout-2026-06-18T21-48-30-019edcb5-0068-78d0-bf49-2c704ad30e38.jsonl","preview","vscode",{"_93":468},"threadSource",[],"updatedAt",[],"messages",[947],{"_42":948,"_949":950,"_951":952,"_953":952,"_474":954,"_464":955,"_476":-5,"_956":32,"_477":957,"_958":329,"_959":-5},"0d39e5d4-11e9-4918-bd19-0e66e60197c3","author",{"_97":355,"_227":-5,"_477":968},"create_time",1781819309.635614,"update_time",{"_964":46,"_965":966},"finished_successfully","weight",{"_960":961},"recipient","channel","l1239dk1",{"_962":963},"inline_comments",[],"content_type","parts",[967],"@codex address all of the issues found in code review https://github.com/hdclark/DICOMautomaton/pull/161#pullrequestreview-4528638833\nAdd FetchContent fallbacks for optional external dependencies\n\n### Motivation\n- Improve CMake-based dependency handling by fetching optional third-party libraries via `FetchContent` when system packages are missing, while preserving the existing ability to disable features for minimal builds (`WITH_*` options).\n- Centralize fetch logic and common helpers to reduce duplication and make it straightforward to add more fallbacks in the future.\n- Ensure fetched dependencies integrate with the existing compile/settings and target linkage so build flags and include paths propagate correctly.\n\n### Description\n- Add `cmake/ExternalDependencyFallbacks.cmake` which provides `_dcma_fetchcontent_*` helpers, `_dcma_require_or_fetch`, and `dcma_fetch_*` functions for Eigen3, CGAL, nlopt, SFML, SDL2, GLEW, GNU GSL, Jansson, libpqxx (Postgres), Thrift, and Wt, including support for `FetchContent` population and optional source-subdirectory handling.\n- Include the new fallback module from the top-level `CMakeLists.txt` and wire calls to the appropriate `dcma_fetch_*()` helpers where the previous code would issue a fatal error when a dependency was missing; the helpers only fetch when `WITH_FETCHCONTENT_FALLBACK` is enabled and the specific `WITH_*` feature is on.\n- Propagate include/link variables for fetched/system `Jansson` and `Wt` through `dcma_compile_settings` (`cmake/CompileSettings.cmake`) and update `src/CMakeLists.txt` target link lines to use the discovered `${JANSSON_LIBRARIES}` and `${WT_LIBRARIES}` variables instead of hard-coded names.\n- Preserve existing behavior for author upstream libs (Ygor, YgorClustering, Explicator) and feature toggles (`WITH_*`) so users can opt out for minimal builds.\n\n### Testing\n- Ran `cmake -P cmake/ExternalDependencyFallbacks.cmake` to validate the new module parsed and executed, and it completed successfully.\n- Ran `git diff --check -- CMakeLists.txt cmake/CompileSettings.cmake src/CMakeLists.txt cmake/ExternalDependencyFallbacks.cmake` to ensure no whitespace/format issues; this check passed.\n- Performed configure attempts with fetch fallback behavior: `cmake -S . -B /tmp/dcma-fetch-min -DWITH_FETCHCONTENT_FALLBACK=ON ...` and a stubbed-prefix configure `cmake -S . -B /tmp/dcma-cmake-check -DCMAKE_PREFIX_PATH=/tmp/dcma-stubs ...`; both runs exercised the fetch paths but ultimately failed in this CI-like environment due to missing system Boost headers/libraries (environment issue), not due to the new fallback logic.\n\n------\n[Codex Task](https://chatgpt.com/codex/cloud/tasks/task_e_6a345c5c8744832092e294bddb73af5c)\n@codex review this PR\n**_{_{![P1 Badge](https://img.shields.io/badge/P1-orange?style=flat)}} Point GNU GSL FetchContent at a valid tag**\n\nWhen `WITH_FETCHCONTENT_FALLBACK=ON` and the system `gsl` pkg-config module is absent, this asks Git for `v2.7.1`, but `ampl/gsl` does not publish that tag (its tag list has `v2.7.0` and `20211111`: https://github.com/ampl/gsl/tags). In that fallback environment CMake fails during the FetchContent download step before any GSL build can start, so the new GNU GSL fallback is unusable.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Expose nlopt's generated headers to object targets**\n\nIn the FetchContent path, project object targets get nlopt headers only through `NLOPT_INCLUDE_DIRS` from `dcma_compile_settings`; nlopt v2.7.1 generates the C++ header `nlopt.hpp` into its build directory (see its CMake file: https://raw.githubusercontent.com/stevengj/nlopt/v2.7.1/CMakeLists.txt), while this line exposes only `src/api`. With a missing system nlopt and `WITH_NLOPT=ON`, sources such as `src/Operations/OptimizeStaticBeams.cc` that include `` fail to compile unless `${nlopt_BINARY_DIR}` is also included.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Expose libpqxx's generated public headers**\n\nFor FetchContent libpqxx, only the source include directory is propagated to this project's object libraries, but libpqxx 7.9.2 generates public headers such as `pqxx/config-public-compiler.h` under `${libpqxx_BINARY_DIR}/include` and `pqxx/pqxx` includes that file. In a `WITH_POSTGRES` fallback build, the PACS object files compile before the final executable link to `pqxx`, so they do not inherit the pqxx target's public include dirs and fail to include `` unless the binary include directory is added here.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Create CGAL imported targets after fetching CGAL**\n\nIn the CGAL fallback path, `add_subdirectory()` configures CGAL's build tree but does not itself make `CGAL::CGAL`/`CGAL::CGAL_Core` available to the parent project; CGAL defines those imported targets from its generated `CGALConfig.cmake` (see https://raw.githubusercontent.com/CGAL/cgal/v5.6.1/Installation/lib/cmake/CGAL/CGALConfig.cmake). With system CGAL missing and fallback enabled, the later `target_link_libraries(... CGAL::CGAL CGAL::CGAL_Core)` entries therefore fail at generation unless this helper also loads the generated package config or creates equivalent targets.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Expose SDL's generated config headers to object targets**\n\nThe fetched SDL2 CMake build deliberately puts `${SDL2_BINARY_DIR}/include` and its generated config include directory before the source include directory and defines `USING_GENERATED_CONFIG_H` (https://raw.githubusercontent.com/libsdl-org/SDL/release-2.30.12/CMakeLists.txt), but this fallback only propagates `${SDL2_SOURCE_DIR}/include` through `dcma_compile_settings`. Project object files that include `` then pick up SDL's source `SDL_config.h`/minimal config instead of the generated platform config used to build SDL itself, which can compile consumers with declarations that do not match the fetched library.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Honor the project's CMake 3.12 floor for Wt fallback**\n\nThis project still advertises `cmake_minimum_required(VERSION 3.12.0)`, but the selected Wt 4.10.4 source declares `cmake_minimum_required(VERSION 3.13...3.22)` in its top-level CMakeLists (https://raw.githubusercontent.com/emweb/wt/4.10.4/CMakeLists.txt). Users on the supported CMake 3.12 path only hit this when system Wt is absent and `WITH_FETCHCONTENT_FALLBACK=ON`, where the new fallback now fails during `add_subdirectory(wt)`; either the project minimum needs to move up or the fallback needs a compatible Wt source.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Select GLEW's static target for static fallback builds**\n\nWhen `BUILD_SHARED_LIBS=OFF`, this project defines `GLEW_STATIC` and adds `-static`, but the fetched GLEW CMake creates the static target as `glew_s`, not `libglew_static` (see https://raw.githubusercontent.com/nigels-com/glew/glew-2.2.0/build/cmake/CMakeLists.txt). This branch therefore falls through to the shared `glew` target even in static builds, so fallback SDL/GLEW configurations either link the wrong library variant or fail under the static link flags.\n\nUseful? React with 👍 / 👎.\n\n### 💡 Codex Review\n\nHere are some automated review suggestions for this pull request.\n\n**Reviewed commit:** `fdf86fbfd5`\n \n\n

ℹ️ About Codex in GitHub

\n
\n\n[Your team has set up Codex to review pull requests in this repo](https://chatgpt.com/codex/cloud/settings/general). Reviews are triggered when you\n- Open a pull request for review\n- Mark a draft as ready\n- Comment \"@codex review\".\n\nIf Codex has suggestions, it will comment; otherwise it will react with 👍.\n\n\n\n\nCodex can also answer questions or update the PR. Try commenting \"@codex address that feedback\".\n \n

",{},"created",1781819403.322938,"Completing the task","event_type","info",{"_93":480,"_97":94,"_474":1501},{"_93":1000,"_1001":1002},{"_93":977,"_978":570,"_979":980,"_981":982,"_983":-5},"pr","pr_title","pr_message","### Motivation\n- Make the FetchContent fallbacks robust when system packages are missing by addressing issues found during review that caused configure or compile-time failures for several dependencies.\n- Ensure generated/public headers and expected imported targets from fetched libraries are visible to object/consumer targets so downstream compilation succeeds.\n- Honor the minimum CMake requirement of fetched sources (Wt) to avoid add_subdirectory() failures when using fallbacks.\n\n### Description\n- Bump project CMake minimum from `3.12.0` to `3.13.0` in `CMakeLists.txt` so the Wt fallback can be configured without violating its own CMake floor. \n- In `cmake/ExternalDependencyFallbacks.cmake` create imported interface targets `CGAL::CGAL` and `CGAL::CGAL_Core` when the fetched CGAL tree does not export them, and propagate include and GMP/MPFR linkage for those targets. \n- Expose generated/build include directories to consumers by adding `${nlopt_BINARY_DIR}` to `NLOPT_INCLUDE_DIRS`, prepending SDL2 generated config include dirs to `SDL2_INCLUDE_DIRS`, and adding `${libpqxx_BINARY_DIR}/include` to `POSTGRES_INCLUDE_DIRS`. \n- Prefer the `glew_s` static target when `BUILD_SHARED_LIBS=OFF` for fetched GLEW and retain other fallback target name checks. \n- Pin the GNU GSL FetchContent `GIT_TAG` to the valid upstream `v2.7.0` tag. \n\n### Testing\n- Ran `cmake -P cmake/ExternalDependencyFallbacks.cmake` to validate the new fallback logic and it completed successfully. \n- Ran `git diff --check -- CMakeLists.txt cmake/ExternalDependencyFallbacks.cmake` to verify no whitespace/format issues and it passed.","output_diff",{"_93":981,"_984":505,"_129":130,"_985":-5,"_354":986,"_987":988,"_989":990,"_991":992,"_993":557,"_994":570,"_995":996},"pre_apply_patch","repo_id","preapply_patch_base_commit_sha","diff --git a/CMakeLists.txt b/CMakeLists.txt\nindex da2df347a6babb863e88ea9b2c93a91db842781a..f681ed7eddd47b93972b664dee8b1242e3726d0a 100644\n--- a/CMakeLists.txt\n+++ b/CMakeLists.txt\n@@ -1,27 +1,27 @@\n \n-cmake_minimum_required(VERSION 3.12.0 FATAL_ERROR)\n+cmake_minimum_required(VERSION 3.13.0 FATAL_ERROR)\n project(DICOMautomaton VERSION 0.0.1 LANGUAGES CXX)\n \n # Add cmake/ to module search path so includes like include(PackageLists) work.\n list(APPEND CMAKE_MODULE_PATH \"${CMAKE_CURRENT_SOURCE_DIR}/cmake\")\n \n # Centralized package-name lists for various package managers.\n include(cmake/PackageLists.cmake)\n \n ####################################################################################\n # User Options\n ####################################################################################\n \n option(MEMORY_CONSTRAINED_BUILD \"Compile slowly, with minimal memory usage.\" OFF)\n option(WITH_IWYU \"Compile using clang include-what-you-use.\" OFF)\n \n option(WITH_ASAN \"Compile using ASan, LSan, & UBSan.\" OFF)\n option(WITH_TSAN \"Compile using ThreadSanitizer.\" OFF)\n option(WITH_MSAN \"Compile using MemorySanitizer.\" OFF)\n \n option(WITH_EIGEN \"Compile assuming Eigen is available.\" ON)\n option(WITH_CGAL \"Compile assuming CGAL is available.\" ON)\n option(WITH_NLOPT \"Compile assuming nlopt is available.\" ON)\n option(WITH_SFML \"Compile assuming SFML is available.\" OFF)\n option(WITH_SDL \"Compile assuming SDL2 and glew are available.\" ON)\n option(WITH_WT \"Compile assuming Wt is available.\" ON)\ndiff --git a/cmake/ExternalDependencyFallbacks.cmake b/cmake/ExternalDependencyFallbacks.cmake\nindex dbfea2c24ec0d9585ecd37b1c2845a8cd9add933..d9babd871736e1bbb402bf1e6aea84a36c0eeb03 100644\n--- a/cmake/ExternalDependencyFallbacks.cmake\n+++ b/cmake/ExternalDependencyFallbacks.cmake\n@@ -40,180 +40,197 @@ function(_dcma_require_or_fetch dep_name)\n if(NOT WITH_FETCHCONTENT_FALLBACK)\n message(FATAL_ERROR \"${dep_name} not found. Install the system package or set WITH_FETCHCONTENT_FALLBACK=ON.\")\n endif()\n message(STATUS \"${dep_name} not found; fetching via FetchContent.\")\n endfunction()\n \n function(dcma_fetch_eigen3)\n _dcma_require_or_fetch(Eigen3)\n FetchContent_Declare(\n Eigen3\n GIT_REPOSITORY https://gitlab.com/libeigen/eigen.git\n GIT_TAG 3147391d946bb4b6c68edd901f2add6ac1f31f8c # 3.4.0\n )\n _dcma_fetchcontent_add_subdirectory(Eigen3)\n set(Eigen3_FOUND TRUE PARENT_SCOPE)\n endfunction()\n \n function(dcma_fetch_cgal)\n _dcma_require_or_fetch(CGAL)\n FetchContent_Declare(\n CGAL\n GIT_REPOSITORY https://github.com/CGAL/cgal.git\n GIT_TAG v5.6.1\n )\n _dcma_fetchcontent_add_subdirectory(CGAL)\n+ if(NOT TARGET CGAL::CGAL)\n+ add_library(CGAL::CGAL INTERFACE IMPORTED)\n+ target_include_directories(CGAL::CGAL INTERFACE \"${CGAL_SOURCE_DIR}/include\")\n+ target_link_libraries(CGAL::CGAL INTERFACE ${GMP_LIBRARY} ${MPFR_LIBRARY})\n+ endif()\n+ if(NOT TARGET CGAL::CGAL_Core)\n+ add_library(CGAL::CGAL_Core INTERFACE IMPORTED)\n+ target_link_libraries(CGAL::CGAL_Core INTERFACE CGAL::CGAL)\n+ endif()\n set(CGAL_FOUND TRUE PARENT_SCOPE)\n endfunction()\n \n function(dcma_fetch_nlopt)\n _dcma_require_or_fetch(nlopt)\n set(NLOPT_CXX ON CACHE BOOL \"Build the nlopt C++ interface.\" FORCE)\n set(NLOPT_PYTHON OFF CACHE BOOL \"Do not build nlopt Python bindings.\" FORCE)\n set(NLOPT_OCTAVE OFF CACHE BOOL \"Do not build nlopt Octave bindings.\" FORCE)\n set(NLOPT_MATLAB OFF CACHE BOOL \"Do not build nlopt Matlab bindings.\" FORCE)\n set(NLOPT_GUILE OFF CACHE BOOL \"Do not build nlopt Guile bindings.\" FORCE)\n set(NLOPT_SWIG OFF CACHE BOOL \"Do not build nlopt SWIG bindings.\" FORCE)\n set(NLOPT_TESTS OFF CACHE BOOL \"Do not build nlopt tests.\" FORCE)\n FetchContent_Declare(\n nlopt\n GIT_REPOSITORY https://github.com/stevengj/nlopt.git\n GIT_TAG 9c7018f617dcf74a6e42f67e0a14869f10e5c957 # v2.7.1\n )\n _dcma_fetchcontent_add_subdirectory(nlopt)\n set(NLOPT_FOUND TRUE PARENT_SCOPE)\n- set(NLOPT_INCLUDE_DIRS \"${nlopt_SOURCE_DIR}/src/api\" PARENT_SCOPE)\n+ set(NLOPT_INCLUDE_DIRS \"${nlopt_SOURCE_DIR}/src/api\" \"${nlopt_BINARY_DIR}\" PARENT_SCOPE)\n if(TARGET nlopt)\n set(NLOPT_LIBRARIES nlopt PARENT_SCOPE)\n elseif(TARGET nlopt_cxx)\n set(NLOPT_LIBRARIES nlopt_cxx PARENT_SCOPE)\n endif()\n endfunction()\n \n function(dcma_fetch_sfml)\n _dcma_require_or_fetch(SFML)\n set(SFML_BUILD_AUDIO OFF CACHE BOOL \"Do not build SFML audio.\" FORCE)\n set(SFML_BUILD_NETWORK OFF CACHE BOOL \"Do not build SFML network.\" FORCE)\n set(SFML_BUILD_EXAMPLES OFF CACHE BOOL \"Do not build SFML examples.\" FORCE)\n set(SFML_BUILD_DOC OFF CACHE BOOL \"Do not build SFML documentation.\" FORCE)\n FetchContent_Declare(\n SFML\n GIT_REPOSITORY https://github.com/SFML/SFML.git\n GIT_TAG 2.6.1\n )\n _dcma_fetchcontent_add_subdirectory(SFML)\n set(SFML_FOUND TRUE PARENT_SCOPE)\n set(SFML_INCLUDE_DIRS \"${SFML_SOURCE_DIR}/include\" PARENT_SCOPE)\n set(SFML_LIBRARIES sfml-graphics sfml-window sfml-system PARENT_SCOPE)\n endfunction()\n \n function(dcma_fetch_sdl2)\n _dcma_require_or_fetch(SDL2)\n set(SDL_SHARED ${BUILD_SHARED_LIBS} CACHE BOOL \"Build SDL shared library.\" FORCE)\n set(SDL_STATIC ON CACHE BOOL \"Build SDL static library.\" FORCE)\n set(SDL_TEST OFF CACHE BOOL \"Do not build SDL tests.\" FORCE)\n FetchContent_Declare(\n SDL2\n GIT_REPOSITORY https://github.com/libsdl-org/SDL.git\n GIT_TAG release-2.30.12\n )\n _dcma_fetchcontent_add_subdirectory(SDL2)\n set(SDL2_FOUND TRUE PARENT_SCOPE)\n- set(SDL2_INCLUDE_DIRS \"${SDL2_SOURCE_DIR}/include\" PARENT_SCOPE)\n+ set(_dcma_sdl2_include_dirs \"${SDL2_BINARY_DIR}/include\" \"${SDL2_SOURCE_DIR}/include\")\n+ file(GLOB _dcma_sdl2_generated_config_dirs LIST_DIRECTORIES TRUE\n+ \"${SDL2_BINARY_DIR}/include-config-*\")\n+ if(_dcma_sdl2_generated_config_dirs)\n+ list(PREPEND _dcma_sdl2_include_dirs ${_dcma_sdl2_generated_config_dirs})\n+ endif()\n+ set(SDL2_INCLUDE_DIRS ${_dcma_sdl2_include_dirs} PARENT_SCOPE)\n if(TARGET SDL2::SDL2)\n set(SDL2_LIBRARIES SDL2::SDL2 PARENT_SCOPE)\n elseif(TARGET SDL2)\n set(SDL2_LIBRARIES SDL2 PARENT_SCOPE)\n endif()\n endfunction()\n \n function(dcma_fetch_glew)\n _dcma_require_or_fetch(GLEW)\n FetchContent_Declare(\n glew\n GIT_REPOSITORY https://github.com/nigels-com/glew.git\n GIT_TAG glew-2.2.0\n )\n _dcma_fetchcontent_add_subdirectory(glew build/cmake)\n set(GLEW_FOUND TRUE PARENT_SCOPE)\n set(GLEW_INCLUDE_DIRS \"${glew_SOURCE_DIR}/include\" PARENT_SCOPE)\n- if(TARGET libglew_static)\n+ if(NOT BUILD_SHARED_LIBS AND TARGET glew_s)\n+ set(GLEW_LIBRARIES glew_s PARENT_SCOPE)\n+ elseif(TARGET libglew_static)\n set(GLEW_LIBRARIES libglew_static PARENT_SCOPE)\n elseif(TARGET glew)\n set(GLEW_LIBRARIES glew PARENT_SCOPE)\n endif()\n endfunction()\n \n function(dcma_fetch_gsl)\n _dcma_require_or_fetch(GNU_GSL)\n FetchContent_Declare(\n gsl\n GIT_REPOSITORY https://github.com/ampl/gsl.git\n- GIT_TAG v2.7.1\n+ GIT_TAG v2.7.0\n )\n _dcma_fetchcontent_add_subdirectory(gsl)\n set(GNU_GSL_FOUND TRUE PARENT_SCOPE)\n set(GNU_GSL_INCLUDE_DIRS \"${gsl_SOURCE_DIR}\" \"${gsl_BINARY_DIR}\" PARENT_SCOPE)\n if(TARGET gsl)\n set(GNU_GSL_LIBRARIES gsl PARENT_SCOPE)\n elseif(TARGET GSL::gsl)\n set(GNU_GSL_LIBRARIES GSL::gsl PARENT_SCOPE)\n endif()\n endfunction()\n \n function(dcma_fetch_jansson)\n _dcma_require_or_fetch(Jansson)\n set(JANSSON_BUILD_DOCS OFF CACHE BOOL \"Do not build Jansson docs.\" FORCE)\n set(JANSSON_EXAMPLES OFF CACHE BOOL \"Do not build Jansson examples.\" FORCE)\n set(JANSSON_WITHOUT_TESTS ON CACHE BOOL \"Do not build Jansson tests.\" FORCE)\n FetchContent_Declare(\n jansson\n GIT_REPOSITORY https://github.com/akheron/jansson.git\n GIT_TAG v2.14\n )\n _dcma_fetchcontent_add_subdirectory(jansson)\n set(JANSSON_FOUND TRUE PARENT_SCOPE)\n set(JANSSON_INCLUDE_DIRS \"${jansson_SOURCE_DIR}/src\" \"${jansson_BINARY_DIR}/include\" PARENT_SCOPE)\n if(TARGET jansson)\n set(JANSSON_LIBRARIES jansson PARENT_SCOPE)\n elseif(TARGET jansson::jansson)\n set(JANSSON_LIBRARIES jansson::jansson PARENT_SCOPE)\n endif()\n endfunction()\n \n function(dcma_fetch_libpqxx)\n _dcma_require_or_fetch(libpqxx)\n set(BUILD_TEST OFF CACHE BOOL \"Do not build libpqxx tests.\" FORCE)\n set(SKIP_BUILD_TEST ON CACHE BOOL \"Do not build libpqxx tests.\" FORCE)\n FetchContent_Declare(\n libpqxx\n GIT_REPOSITORY https://github.com/jtv/libpqxx.git\n GIT_TAG 7.9.2\n )\n _dcma_fetchcontent_add_subdirectory(libpqxx)\n set(POSTGRES_FOUND TRUE PARENT_SCOPE)\n- set(POSTGRES_INCLUDE_DIRS \"${libpqxx_SOURCE_DIR}/include\" PARENT_SCOPE)\n+ set(POSTGRES_INCLUDE_DIRS \"${libpqxx_SOURCE_DIR}/include\" \"${libpqxx_BINARY_DIR}/include\" PARENT_SCOPE)\n if(TARGET pqxx)\n set(POSTGRES_LIBRARIES pqxx PARENT_SCOPE)\n elseif(TARGET libpqxx::pqxx)\n set(POSTGRES_LIBRARIES libpqxx::pqxx PARENT_SCOPE)\n endif()\n endfunction()\n \n function(dcma_fetch_thrift)\n _dcma_require_or_fetch(Thrift)\n set(BUILD_COMPILER OFF CACHE BOOL \"Do not build the thrift compiler.\" FORCE)\n set(BUILD_TESTING OFF CACHE BOOL \"Do not build thrift tests.\" FORCE)\n set(BUILD_EXAMPLES OFF CACHE BOOL \"Do not build thrift examples.\" FORCE)\n set(WITH_SHARED_LIB ${BUILD_SHARED_LIBS} CACHE BOOL \"Build thrift shared library.\" FORCE)\n set(WITH_STATIC_LIB ON CACHE BOOL \"Build thrift static library.\" FORCE)\n set(WITH_PYTHON OFF CACHE BOOL \"Do not build thrift Python support.\" FORCE)\n set(WITH_JAVA OFF CACHE BOOL \"Do not build thrift Java support.\" FORCE)\n FetchContent_Declare(\n thrift\n GIT_REPOSITORY https://github.com/apache/thrift.git\n GIT_TAG v0.20.0\n )\n _dcma_fetchcontent_add_subdirectory(thrift)\n set(THRIFT_FOUND TRUE PARENT_SCOPE)\n set(THRIFT_INCLUDE_DIRS \"${thrift_SOURCE_DIR}/lib/cpp/src\" \"${thrift_BINARY_DIR}\" PARENT_SCOPE)\n if(TARGET thrift::thrift)\n","external_storage_diff",{"_997":998,"_999":-5},"files_modified",2,"lines_added",23,"lines_removed","commit_message","additional_parent_commit_shas",[],"file_id","file_0000000008cc722f85ea630aac794f74","ttl","partial_repo_snapshot","files",[1003,1004],{"_181":787,"_1006":-5,"_1007":1221,"_1009":-5},{"_181":1005,"_1006":-5,"_1007":1008,"_1009":-5},"cmake/ExternalDependencyFallbacks.cmake","contents","line_range_contents",[1010],"missing_reason",{"_1011":358,"_1012":1013,"_474":1014,"_1015":59},"line_range_start","line_range_end",266,[1016,1017,1018,1019,1020,245,1021,1022,1023,1024,1025,1026,1027,1028,1029,1030,1031,1032,1033,245,1034,1035,1036,1037,1038,1039,1040,1041,1029,1042,1043,1044,1045,1046,1047,1029,1033,245,1048,1049,1050,1029,1051,1033,245,1052,1053,1054,1055,1056,1057,1058,1059,1060,1033,245,1061,1062,1054,1063,1064,1065,1058,1066,1067,1068,1069,1070,1029,1071,1072,1073,1029,1074,1033,245,1075,1076,1077,1078,1079,1080,1081,1082,1083,1054,1084,1085,1086,1058,1087,1088,1089,1090,1091,1092,1093,1029,1033,245,1094,1095,1096,1097,1098,1099,1054,1100,1101,1102,1058,1103,1104,1105,1106,1033,245,1107,1108,1109,1110,1111,1054,1112,1113,1114,1058,1115,1116,1117,1118,1119,1120,1121,1029,1122,1123,1124,1125,1126,1029,1033,245,1127,1128,1054,1129,1130,1131,1058,1132,1133,1134,1135,1136,1137,1138,1139,1140,1029,1033,245,1141,1142,1054,1143,1144,1145,1058,1146,1147,1148,1149,1150,1151,1152,1029,1033,245,1153,1154,1155,1156,1157,1054,1158,1159,1160,1058,1161,1162,1163,1164,1165,1166,1167,1029,1033,245,1168,1169,1170,1171,1054,1172,1173,1174,1058,1175,1176,1177,1178,1179,1180,1181,1029,1033,245,1182,1183,1184,1185,1186,1187,1188,1189,1190,1054,1191,1192,1193,1058,1194,1195,1196,1197,1198,1199,1200,1029,1033,245,1201,1202,1203,1204,1205,1206,1207,1208,1209,1210,1054,1211,1212,1213,1058,1214,1215,1216,1217,1218,1219,1220,1029,1033],"contains_end_of_file","# ExternalDependencyFallbacks.cmake","#","# FetchContent fallback helpers for optional third-party dependencies. These","# helpers are only used after the normal system package discovery path fails and","# only when WITH_FETCHCONTENT_FALLBACK is enabled.","function(_dcma_fetchcontent_populate dep_name)"," FetchContent_GetProperties(${dep_name})"," string(TOLOWER \"${dep_name}\" _dcma_fc_lower)"," if(NOT ${_dcma_fc_lower}_POPULATED)"," if(POLICY CMP0169)"," cmake_policy(SET CMP0169 OLD) # Permit use of FetchContent_Populate()."," endif()"," FetchContent_Populate(${dep_name})"," endif()"," set(${dep_name}_SOURCE_DIR \"${${_dcma_fc_lower}_SOURCE_DIR}\" PARENT_SCOPE)"," set(${dep_name}_BINARY_DIR \"${${_dcma_fc_lower}_BINARY_DIR}\" PARENT_SCOPE)"," unset(_dcma_fc_lower)","endfunction()","function(_dcma_fetchcontent_add_subdirectory dep_name)"," set(_dcma_source_subdir \"${ARGV1}\")"," _dcma_fetchcontent_populate(${dep_name})"," set(_dcma_source_dir \"${${dep_name}_SOURCE_DIR}\")"," set(_dcma_binary_dir \"${${dep_name}_BINARY_DIR}\")"," if(NOT \"${_dcma_source_subdir}\" STREQUAL \"\")"," set(_dcma_source_dir \"${_dcma_source_dir}/${_dcma_source_subdir}\")"," set(_dcma_binary_dir \"${_dcma_binary_dir}/${_dcma_source_subdir}\")"," if(EXISTS \"${_dcma_source_dir}/CMakeLists.txt\")"," add_subdirectory(\"${_dcma_source_dir}\""," \"${_dcma_binary_dir}\""," EXCLUDE_FROM_ALL)"," else()"," message(FATAL_ERROR \"${dep_name} was fetched, but no CMakeLists.txt was found under ${_dcma_source_dir}.\")","function(_dcma_require_or_fetch dep_name)"," if(NOT WITH_FETCHCONTENT_FALLBACK)"," message(FATAL_ERROR \"${dep_name} not found. Install the system package or set WITH_FETCHCONTENT_FALLBACK=ON.\")"," message(STATUS \"${dep_name} not found; fetching via FetchContent.\")","function(dcma_fetch_eigen3)"," _dcma_require_or_fetch(Eigen3)"," FetchContent_Declare("," Eigen3"," GIT_REPOSITORY https://gitlab.com/libeigen/eigen.git"," GIT_TAG 3147391d946bb4b6c68edd901f2add6ac1f31f8c # 3.4.0"," )"," _dcma_fetchcontent_add_subdirectory(Eigen3)"," set(Eigen3_FOUND TRUE PARENT_SCOPE)","function(dcma_fetch_cgal)"," _dcma_require_or_fetch(CGAL)"," CGAL"," GIT_REPOSITORY https://github.com/CGAL/cgal.git"," GIT_TAG v5.6.1"," _dcma_fetchcontent_add_subdirectory(CGAL)"," if(NOT TARGET CGAL::CGAL)"," add_library(CGAL::CGAL INTERFACE IMPORTED)"," target_include_directories(CGAL::CGAL INTERFACE \"${CGAL_SOURCE_DIR}/include\")"," target_link_libraries(CGAL::CGAL INTERFACE ${GMP_LIBRARY} ${MPFR_LIBRARY})"," if(NOT TARGET CGAL::CGAL_Core)"," add_library(CGAL::CGAL_Core INTERFACE IMPORTED)"," target_link_libraries(CGAL::CGAL_Core INTERFACE CGAL::CGAL)"," set(CGAL_FOUND TRUE PARENT_SCOPE)","function(dcma_fetch_nlopt)"," _dcma_require_or_fetch(nlopt)"," set(NLOPT_CXX ON CACHE BOOL \"Build the nlopt C++ interface.\" FORCE)"," set(NLOPT_PYTHON OFF CACHE BOOL \"Do not build nlopt Python bindings.\" FORCE)"," set(NLOPT_OCTAVE OFF CACHE BOOL \"Do not build nlopt Octave bindings.\" FORCE)"," set(NLOPT_MATLAB OFF CACHE BOOL \"Do not build nlopt Matlab bindings.\" FORCE)"," set(NLOPT_GUILE OFF CACHE BOOL \"Do not build nlopt Guile bindings.\" FORCE)"," set(NLOPT_SWIG OFF CACHE BOOL \"Do not build nlopt SWIG bindings.\" FORCE)"," set(NLOPT_TESTS OFF CACHE BOOL \"Do not build nlopt tests.\" FORCE)"," nlopt"," GIT_REPOSITORY https://github.com/stevengj/nlopt.git"," GIT_TAG 9c7018f617dcf74a6e42f67e0a14869f10e5c957 # v2.7.1"," _dcma_fetchcontent_add_subdirectory(nlopt)"," set(NLOPT_FOUND TRUE PARENT_SCOPE)"," set(NLOPT_INCLUDE_DIRS \"${nlopt_SOURCE_DIR}/src/api\" \"${nlopt_BINARY_DIR}\" PARENT_SCOPE)"," if(TARGET nlopt)"," set(NLOPT_LIBRARIES nlopt PARENT_SCOPE)"," elseif(TARGET nlopt_cxx)"," set(NLOPT_LIBRARIES nlopt_cxx PARENT_SCOPE)","function(dcma_fetch_sfml)"," _dcma_require_or_fetch(SFML)"," set(SFML_BUILD_AUDIO OFF CACHE BOOL \"Do not build SFML audio.\" FORCE)"," set(SFML_BUILD_NETWORK OFF CACHE BOOL \"Do not build SFML network.\" FORCE)"," set(SFML_BUILD_EXAMPLES OFF CACHE BOOL \"Do not build SFML examples.\" FORCE)"," set(SFML_BUILD_DOC OFF CACHE BOOL \"Do not build SFML documentation.\" FORCE)"," SFML"," GIT_REPOSITORY https://github.com/SFML/SFML.git"," GIT_TAG 2.6.1"," _dcma_fetchcontent_add_subdirectory(SFML)"," set(SFML_FOUND TRUE PARENT_SCOPE)"," set(SFML_INCLUDE_DIRS \"${SFML_SOURCE_DIR}/include\" PARENT_SCOPE)"," set(SFML_LIBRARIES sfml-graphics sfml-window sfml-system PARENT_SCOPE)","function(dcma_fetch_sdl2)"," _dcma_require_or_fetch(SDL2)"," set(SDL_SHARED ${BUILD_SHARED_LIBS} CACHE BOOL \"Build SDL shared library.\" FORCE)"," set(SDL_STATIC ON CACHE BOOL \"Build SDL static library.\" FORCE)"," set(SDL_TEST OFF CACHE BOOL \"Do not build SDL tests.\" FORCE)"," SDL2"," GIT_REPOSITORY https://github.com/libsdl-org/SDL.git"," GIT_TAG release-2.30.12"," _dcma_fetchcontent_add_subdirectory(SDL2)"," set(SDL2_FOUND TRUE PARENT_SCOPE)"," set(_dcma_sdl2_include_dirs \"${SDL2_BINARY_DIR}/include\" \"${SDL2_SOURCE_DIR}/include\")"," file(GLOB _dcma_sdl2_generated_config_dirs LIST_DIRECTORIES TRUE"," \"${SDL2_BINARY_DIR}/include-config-*\")"," if(_dcma_sdl2_generated_config_dirs)"," list(PREPEND _dcma_sdl2_include_dirs ${_dcma_sdl2_generated_config_dirs})"," set(SDL2_INCLUDE_DIRS ${_dcma_sdl2_include_dirs} PARENT_SCOPE)"," if(TARGET SDL2::SDL2)"," set(SDL2_LIBRARIES SDL2::SDL2 PARENT_SCOPE)"," elseif(TARGET SDL2)"," set(SDL2_LIBRARIES SDL2 PARENT_SCOPE)","function(dcma_fetch_glew)"," _dcma_require_or_fetch(GLEW)"," glew"," GIT_REPOSITORY https://github.com/nigels-com/glew.git"," GIT_TAG glew-2.2.0"," _dcma_fetchcontent_add_subdirectory(glew build/cmake)"," set(GLEW_FOUND TRUE PARENT_SCOPE)"," set(GLEW_INCLUDE_DIRS \"${glew_SOURCE_DIR}/include\" PARENT_SCOPE)"," if(NOT BUILD_SHARED_LIBS AND TARGET glew_s)"," set(GLEW_LIBRARIES glew_s PARENT_SCOPE)"," elseif(TARGET libglew_static)"," set(GLEW_LIBRARIES libglew_static PARENT_SCOPE)"," elseif(TARGET glew)"," set(GLEW_LIBRARIES glew PARENT_SCOPE)","function(dcma_fetch_gsl)"," _dcma_require_or_fetch(GNU_GSL)"," gsl"," GIT_REPOSITORY https://github.com/ampl/gsl.git"," GIT_TAG v2.7.0"," _dcma_fetchcontent_add_subdirectory(gsl)"," set(GNU_GSL_FOUND TRUE PARENT_SCOPE)"," set(GNU_GSL_INCLUDE_DIRS \"${gsl_SOURCE_DIR}\" \"${gsl_BINARY_DIR}\" PARENT_SCOPE)"," if(TARGET gsl)"," set(GNU_GSL_LIBRARIES gsl PARENT_SCOPE)"," elseif(TARGET GSL::gsl)"," set(GNU_GSL_LIBRARIES GSL::gsl PARENT_SCOPE)","function(dcma_fetch_jansson)"," _dcma_require_or_fetch(Jansson)"," set(JANSSON_BUILD_DOCS OFF CACHE BOOL \"Do not build Jansson docs.\" FORCE)"," set(JANSSON_EXAMPLES OFF CACHE BOOL \"Do not build Jansson examples.\" FORCE)"," set(JANSSON_WITHOUT_TESTS ON CACHE BOOL \"Do not build Jansson tests.\" FORCE)"," jansson"," GIT_REPOSITORY https://github.com/akheron/jansson.git"," GIT_TAG v2.14"," _dcma_fetchcontent_add_subdirectory(jansson)"," set(JANSSON_FOUND TRUE PARENT_SCOPE)"," set(JANSSON_INCLUDE_DIRS \"${jansson_SOURCE_DIR}/src\" \"${jansson_BINARY_DIR}/include\" PARENT_SCOPE)"," if(TARGET jansson)"," set(JANSSON_LIBRARIES jansson PARENT_SCOPE)"," elseif(TARGET jansson::jansson)"," set(JANSSON_LIBRARIES jansson::jansson PARENT_SCOPE)","function(dcma_fetch_libpqxx)"," _dcma_require_or_fetch(libpqxx)"," set(BUILD_TEST OFF CACHE BOOL \"Do not build libpqxx tests.\" FORCE)"," set(SKIP_BUILD_TEST ON CACHE BOOL \"Do not build libpqxx tests.\" FORCE)"," libpqxx"," GIT_REPOSITORY https://github.com/jtv/libpqxx.git"," GIT_TAG 7.9.2"," _dcma_fetchcontent_add_subdirectory(libpqxx)"," set(POSTGRES_FOUND TRUE PARENT_SCOPE)"," set(POSTGRES_INCLUDE_DIRS \"${libpqxx_SOURCE_DIR}/include\" \"${libpqxx_BINARY_DIR}/include\" PARENT_SCOPE)"," if(TARGET pqxx)"," set(POSTGRES_LIBRARIES pqxx PARENT_SCOPE)"," elseif(TARGET libpqxx::pqxx)"," set(POSTGRES_LIBRARIES libpqxx::pqxx PARENT_SCOPE)","function(dcma_fetch_thrift)"," _dcma_require_or_fetch(Thrift)"," set(BUILD_COMPILER OFF CACHE BOOL \"Do not build the thrift compiler.\" FORCE)"," set(BUILD_TESTING OFF CACHE BOOL \"Do not build thrift tests.\" FORCE)"," set(BUILD_EXAMPLES OFF CACHE BOOL \"Do not build thrift examples.\" FORCE)"," set(WITH_SHARED_LIB ${BUILD_SHARED_LIBS} CACHE BOOL \"Build thrift shared library.\" FORCE)"," set(WITH_STATIC_LIB ON CACHE BOOL \"Build thrift static library.\" FORCE)"," set(WITH_PYTHON OFF CACHE BOOL \"Do not build thrift Python support.\" FORCE)"," set(WITH_JAVA OFF CACHE BOOL \"Do not build thrift Java support.\" FORCE)"," thrift"," GIT_REPOSITORY https://github.com/apache/thrift.git"," GIT_TAG v0.20.0"," _dcma_fetchcontent_add_subdirectory(thrift)"," set(THRIFT_FOUND TRUE PARENT_SCOPE)"," set(THRIFT_INCLUDE_DIRS \"${thrift_SOURCE_DIR}/lib/cpp/src\" \"${thrift_BINARY_DIR}\" PARENT_SCOPE)"," if(TARGET thrift::thrift)"," set(THRIFT_LIBRARIES thrift::thrift PARENT_SCOPE)"," elseif(TARGET thrift)"," set(THRIFT_LIBRARIES thrift PARENT_SCOPE)","function(dcma_fetch_wt)"," _dcma_require_or_fetch(Wt)"," set(BUILD_EXAMPLES OFF CACHE BOOL \"Do not build Wt examples.\" FORCE)"," set(BUILD_TESTS OFF CACHE BOOL \"Do not build Wt tests.\" FORCE)"," set(ENABLE_HARU OFF CACHE BOOL \"Do not build Wt Haru support.\" FORCE)"," set(ENABLE_POSTGRES OFF CACHE BOOL \"Do not build Wt PostgreSQL support.\" FORCE)"," set(ENABLE_MYSQL OFF CACHE BOOL \"Do not build Wt MySQL support.\" FORCE)"," set(ENABLE_FIREBIRD OFF CACHE BOOL \"Do not build Wt Firebird support.\" FORCE)"," set(ENABLE_QT4 OFF CACHE BOOL \"Do not build Wt Qt4 support.\" FORCE)"," set(ENABLE_QT5 OFF CACHE BOOL \"Do not build Wt Qt5 support.\" FORCE)"," wt"," GIT_REPOSITORY https://github.com/emweb/wt.git"," GIT_TAG 4.10.4"," 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3.13.0 FATAL_ERROR)","project(DICOMautomaton VERSION 0.0.1 LANGUAGES CXX)","# Add cmake/ to module search path so includes like include(PackageLists) work.","list(APPEND CMAKE_MODULE_PATH \"${CMAKE_CURRENT_SOURCE_DIR}/cmake\")","# Centralized package-name lists for various package managers.","include(cmake/PackageLists.cmake)","####################################################################################","# User Options","option(MEMORY_CONSTRAINED_BUILD \"Compile slowly, with minimal memory usage.\" OFF)","option(WITH_IWYU \"Compile using clang include-what-you-use.\" OFF)","option(WITH_ASAN \"Compile using ASan, LSan, & UBSan.\" OFF)","option(WITH_TSAN \"Compile using ThreadSanitizer.\" OFF)","option(WITH_MSAN \"Compile using MemorySanitizer.\" OFF)","option(WITH_EIGEN \"Compile assuming Eigen is available.\" ON)","option(WITH_CGAL \"Compile assuming CGAL is available.\" ON)","option(WITH_NLOPT \"Compile assuming nlopt is available.\" ON)","option(WITH_SFML \"Compile assuming SFML is available.\" OFF)","option(WITH_SDL \"Compile assuming SDL2 and glew are available.\" ON)","option(WITH_WT \"Compile assuming Wt is available.\" ON)","option(WITH_GNU_GSL \"Compile assuming the GNU GSL is available.\" ON)","option(WITH_POSTGRES \"Compile assuming PostgreSQL libraries are available.\" ON)","option(WITH_JANSSON \"Compile assuming Jansson is available.\" ON)","option(WITH_THRIFT \"Compile assuming Apache Thrift is available.\" ON)","option(WITH_EXT_SYCL \"Compile assuming external SYCL support is available.\" ON)","option(WITH_LTO \"Use link-time optimization when available.\" OFF)","option(BUILD_SHARED_LIBS \"Build shared-object/dynamicly-loaded binaries.\" ON)","# When ON, attempt to download missing dependencies via CMake FetchContent","# before raising a fatal error. Useful for environments without system packages","# but NOT recommended when integrating with OS/third-party package managers.","option(WITH_FETCHCONTENT_FALLBACK \"Download missing dependencies if not found.\" OFF)","# Configuration","# Set the C++ standard (DICOMautomaton requires C++17).","set(CMAKE_CXX_STANDARD 17)","set(CMAKE_CXX_STANDARD_REQUIRED ON)","set(CMAKE_CXX_EXTENSIONS OFF) # Disable GNU extensions (e.g., std=gnu++14). Enforced via target_compile_features.","# High-level configuration.","if(NOT BUILD_SHARED_LIBS)"," #set(CMAKE_FIND_LIBRARY_SUFFIXES \".a\")"," link_libraries(\"-static\")"," set(CMAKE_EXE_LINKER_FLAGS \"-static\")","endif()","set(CMAKE_EXPORT_COMPILE_COMMANDS ON) # For use with clang-tidy et al.","set(THREADS_PREFER_PTHREAD_FLAG ON)","set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)","set(POSITION_INDEPENDENT_CODE TRUE)","if(NOT CMAKE_BUILD_TYPE)"," # Default to debug builds."," set(CMAKE_BUILD_TYPE Debug CACHE STRING \"default to debug\" FORCE)","if(WITH_LTO)"," include(CheckIPOSupported)"," check_ipo_supported(RESULT lto_avail OUTPUT lto_msg)"," if(lto_avail)"," set(CMAKE_INTERPROCEDURAL_OPTIMIZATION TRUE)"," message(WARNING \"LTO was requested, but is not supported: ${lto_msg}\")","# Bring in standard install directory variables (CMAKE_INSTALL_LIBDIR etc.)","# early so they can be referenced in FetchContent and dependency detection","# blocks. This is safe to call multiple times.","include(GNUInstallDirs)","set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/${CMAKE_INSTALL_LIBDIR})","set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/${CMAKE_INSTALL_LIBDIR})","set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/${CMAKE_INSTALL_BINDIR})","set(BASH_COMPLETION_INSTALL_DIR \"${CMAKE_INSTALL_DATAROOTDIR}/bash-completion/completions/\")","# Use the directory where CMakeLists.txt is for inclusions.","set(CMAKE_INCLUDE_CURRENT_DIR ON)","set(CMAKE_INCLUDE_CURRENT_DIR_IN_INTERFACE ON)","# FetchContent is available in CMake 3.11+. We require 3.12+ so it is always available.","include(FetchContent)","include(cmake/ExternalDependencyFallbacks.cmake)","# Dependencies ","# Author's upstream support libraries: Ygor, YgorClustering, Explicator.","# Uses find_package() with optional FetchContent fallback (cmake 3.12+).","include(cmake/UpstreamAuthorDeps.cmake)","find_package(Threads REQUIRED)","# Enable verbose Boost find_package output only for Debug builds.","if(\"${CMAKE_BUILD_TYPE}\" STREQUAL \"Debug\")"," set(Boost_DEBUG ON)"," #set(Boost_USE_STATIC_RUNTIME ON)"," set(Boost_USE_STATIC_LIBS ON)","find_package(Boost COMPONENTS serialization iostreams thread"," OPTIONAL_COMPONENTS system)","if(NOT Boost_FOUND)"," message(STATUS \"find_package(Boost CONFIG) not found, attempting non-config method instead\")"," find_package(Boost REQUIRED COMPONENTS serialization iostreams thread"," OPTIONAL_COMPONENTS system)","find_library(MPFR_LIBRARY mpfr)","find_library(GMP_LIBRARY gmp)","if(WITH_EIGEN)"," find_package(Eigen3 CONFIG QUIET)"," if(NOT Eigen3_FOUND)"," find_package(PkgConfig REQUIRED)"," pkg_check_modules(EIGEN3 eigen3)"," if(NOT Eigen3_FOUND AND NOT EIGEN3_FOUND)"," dcma_fetch_eigen3()","if(WITH_CGAL)"," if(\"${CMAKE_BUILD_TYPE}\" STREQUAL \"Debug\")"," set(CGAL_DO_NOT_WARN_ABOUT_CMAKE_BUILD_TYPE TRUE)"," message(WARNING \"If profiling/debugging on Arch Linux, disable binary stripping in PKGBUILD.\")"," find_package(CGAL COMPONENTS Core QUIET)"," if(NOT CGAL_FOUND)"," dcma_fetch_cgal()"," # This workaround is for a CGAL v4.13 class and file rename {Implicit,Labeled}_mesh_domain_3.h."," include(CheckIncludeFileCXX)"," # Alternatively, prefer to use the older Implicit_mesh_domain_3.h when available."," check_include_file_cxx(\"CGAL/Implicit_mesh_domain_3.h\" DCMA_CGAL_HAS_IMPLICIT_MESH_DOMAIN_3_HEADER)","if(WITH_NLOPT)"," find_package(PkgConfig REQUIRED)"," pkg_check_modules(NLOPT nlopt)"," if(NOT NLOPT_FOUND)"," dcma_fetch_nlopt()","if(WITH_SFML)"," if(NOT BUILD_SHARED_LIBS)"," set(SFML_STATIC_LIBRARIES TRUE)"," pkg_check_modules(SFML sfml-graphics sfml-window sfml-system)"," if(NOT SFML_FOUND)"," dcma_fetch_sfml()","if(WITH_SDL)"," set(OpenGL_GL_PREFERENCE GLVND)"," find_package(OpenGL REQUIRED COMPONENTS OpenGL) # Will help pick-up opengl32.a with MXE toolchain."," message(STATUS \"Proceeding with OPENGL_LIBRARIES = '${OPENGL_LIBRARIES}'\")"," message(STATUS \"Proceeding with OPENGL_INCLUDE_DIR = '${OPENGL_INCLUDE_DIR}'\")"," message(STATUS \"Proceeding with OPENGL_CFLAGS = '${OPENGL_CFLAGS}'\")"," find_package(SDL2 QUIET)"," if(NOT SDL2_FOUND)"," message(STATUS \"find_package(SDL2) not found, attempting pkg-config instead\")"," pkg_check_modules(SDL2 sdl2)"," if(NOT SDL2_FOUND)"," dcma_fetch_sdl2()"," message(STATUS \"Proceeding with SDL2_LIBRARIES = '${SDL2_LIBRARIES}'\")"," message(STATUS \"Proceeding with SDL2_INCLUDE_DIRS = '${SDL2_INCLUDE_DIRS}'\")"," message(STATUS \"Proceeding with SDL2_CFLAGS = '${SDL2_CFLAGS}'\")"," if(NOT TARGET SDL2::SDL2)"," message(STATUS \"Simulating missing 'SDL2::SDL2' target\")"," add_library(SDL2::SDL2 INTERFACE IMPORTED)"," target_link_libraries(SDL2::SDL2 INTERFACE \"${SDL2_LIBRARIES}\")"," pkg_check_modules(GLEW glew)"," if(NOT GLEW_FOUND)"," dcma_fetch_glew()","if(WITH_GNU_GSL)"," pkg_check_modules(GNU_GSL gsl)"," if(NOT GNU_GSL_FOUND)"," dcma_fetch_gsl()","if(WITH_POSTGRES)"," pkg_check_modules(POSTGRES libpq libpqxx)"," if(NOT POSTGRES_FOUND)"," dcma_fetch_libpqxx()","if(WITH_JANSSON)"," pkg_check_modules(JANSSON jansson)"," if(NOT JANSSON_FOUND)"," dcma_fetch_jansson()","if(WITH_THRIFT)"," pkg_check_modules(THRIFT thrift)"," if(NOT THRIFT_FOUND)"," dcma_fetch_thrift()","if(WITH_WT)"," find_package(Wt COMPONENTS wt wthttp QUIET)"," if(Wt_FOUND)"," set(WT_LIBRARIES wt wthttp)"," dcma_fetch_wt()","set(DCMA_SYCL_FALLBACK \"Fallback\")","set(DCMA_SYCL_BACKEND \"${DCMA_SYCL_FALLBACK}\")","if(WITH_EXT_SYCL)"," # AdaptiveCPP"," # For best results use the provided toolchain file:"," # cmake -DCMAKE_TOOLCHAIN_FILE=cmake/toolchains/sycl-adaptivecpp.cmake ..."," if(\"${DCMA_SYCL_BACKEND}\" STREQUAL \"${DCMA_SYCL_FALLBACK}\")"," # SYCL support via AdaptiveCpp (formerly hipSYCL)."," # AdaptiveCpp provides the acpp compiler wrapper and CMake integration."," # See https://github.com/AdaptiveCpp/AdaptiveCpp for installation instructions."," "," # Set default ACPP_TARGETS if not already specified by user."," if(NOT DEFINED ACPP_TARGETS)"," set(ACPP_TARGETS \"generic\" CACHE STRING \"AdaptiveCpp backend target\")"," message(STATUS \"ACPP_TARGETS not specified; defaulting to 'generic' for maximum portability.\")"," find_package(AdaptiveCpp CONFIG)"," if(AdaptiveCpp_FOUND)"," get_filename_component(DCMA_CXX_COMPILER_BASENAME \"${CMAKE_CXX_COMPILER}\" NAME)"," message(STATUS \"CXX compiler: ${DCMA_CXX_COMPILER_BASENAME} (Note: can be set via environment flag 'CXX')\")"," set(DCMA_SYCL_BACKEND \"AdaptiveCPP\")"," # TriSYCL (option 1 of 2)"," find_package(trisycl CONFIG)"," if(trisycl_FOUND)"," set(DCMA_SYCL_BACKEND \"TriSYCL\")"," # TriSYCL (option 2 of 2)"," find_package(TriSYCL CONFIG)"," if(TriSYCL_FOUND)","#if(NOT \"${DCMA_SYCL_BACKEND}\" STREQUAL \"${DCMA_SYCL_FALLBACK}\")","# # Assume that OpenMP is needed if any external SYCL components are being used.","# find_package(OpenMP REQUIRED)","#endif()","# DCMA_VERSION detection","if( (NOT DEFINED DCMA_VERSION) OR (\"${DCMA_VERSION}\" MATCHES \"^$\") )"," execute_process( COMMAND"," ./scripts/extract_dcma_version.sh"," WORKING_DIRECTORY \"${CMAKE_SOURCE_DIR}\""," OUTPUT_VARIABLE DCMA_VERSION"," ERROR_QUIET"," OUTPUT_STRIP_TRAILING_WHITESPACE)","if( \"${DCMA_VERSION}\" MATCHES \"^$\" )"," message(WARNING \"Please supply a meaningful DCMA_VERSION when invoking CMake.\")"," set(DCMA_VERSION \"unknown\")","# Platform Feature Detection (for DCMA_Definitions.h)","# Detect whether specific functions/variables/macros are available.","# Note: this method does not support structs. Best to find a function that accepts the struct instead.","include(CheckCXXSymbolExists)","check_cxx_symbol_exists(select \"sys/select.h\" DCMA_HAS_SYS_SELECT) # Function (nominally).","check_cxx_symbol_exists(isatty \"unistd.h\" DCMA_HAS_UNISTD_ISATTY) # Function (nominally).","check_cxx_symbol_exists(fileno \"cstdio\" DCMA_HAS_CSTDIO_FILENO) # Function (nominally).","check_cxx_symbol_exists(ICANON \"termios.h\" DCMA_HAS_TERMIOS_ICANON) # Macro.","check_cxx_symbol_exists(ECHO \"termios.h\" DCMA_HAS_TERMIOS_ECHO) # Macro.","check_cxx_symbol_exists(VMIN \"termios.h\" DCMA_HAS_TERMIOS_VMIN) # Macro.","check_cxx_symbol_exists(VTIME \"termios.h\" DCMA_HAS_TERMIOS_VTIME) # Macro.","check_cxx_symbol_exists(TCSANOW \"termios.h\" DCMA_HAS_TERMIOS_TCSANOW) # Macro.","check_cxx_symbol_exists(tcgetattr \"termios.h\" DCMA_HAS_TERMIOS_TCGETADDR) # Function.","check_cxx_symbol_exists(fcntl \"fcntl.h\" DCMA_HAS_FCNTL_FCNTL) # Function (nominally).","check_cxx_symbol_exists(F_GETFL \"fcntl.h\" DCMA_HAS_FCNTL_F_GETFL) # Macro.","check_cxx_symbol_exists(O_NONBLOCK \"fcntl.h\" DCMA_HAS_FCNTL_O_NONBLOCK) # Macro.","configure_file( ${CMAKE_CURRENT_SOURCE_DIR}/src/DCMA_Definitions.h.in"," ${CMAKE_CURRENT_BINARY_DIR}/src/DCMA_Definitions.h )","# Global Options Target (dcma_compile_settings)","# The 'dcma_compile_settings' INTERFACE library is the project-wide \"Global Options","# Target\". Every DICOMautomaton target links against it to inherit compiler flags,","# compile definitions, and include directories.","# The definition is in cmake/CompileSettings.cmake for clean separation of concerns.","# Downstream CMake consumer usage after install:","# find_package(DICOMautomaton REQUIRED)","# target_link_libraries(my_target PRIVATE DICOMautomaton::dcma_compile_settings)","include(cmake/CompileSettings.cmake)","# Apply dcma_compile_settings to all targets defined in subdirectories.","link_libraries(dcma_compile_settings)","# Subdirectories ","add_subdirectory(src)","add_subdirectory(config-files)","add_subdirectory(scripts)","# CMake Package Config Support","# Install CMake package config files so downstream projects can use:","# target_link_libraries(my_target PRIVATE DICOMautomaton::imebrashim)","# This makes DICOMautomaton compatible with CMake-based consumers, as well as","# third-party C++ package managers (Conan, vcpkg) that rely on CMake config files.","include(CMakePackageConfigHelpers)","configure_package_config_file("," \"${CMAKE_CURRENT_SOURCE_DIR}/cmake/DICOMautomatonConfig.cmake.in\""," \"${CMAKE_CURRENT_BINARY_DIR}/DICOMautomatonConfig.cmake\""," INSTALL_DESTINATION \"${CMAKE_INSTALL_LIBDIR}/cmake/DICOMautomaton\"",")","write_basic_package_version_file("," \"${CMAKE_CURRENT_BINARY_DIR}/DICOMautomatonConfigVersion.cmake\""," VERSION \"${CMAKE_PROJECT_VERSION}\""," COMPATIBILITY SameMajorVersion","install(FILES"," DESTINATION \"${CMAKE_INSTALL_LIBDIR}/cmake/DICOMautomaton\"","# Export dcma_compile_settings INTERFACE library so downstream consumers can inherit","# compile settings simply by linking against it.","install(TARGETS dcma_compile_settings"," EXPORT DICOMautomatonTargets","# The installed DICOMautomatonTargets.cmake is generated by the src/CMakeLists.txt","# install(TARGETS ... EXPORT DICOMautomatonTargets ...) calls.","install(EXPORT DICOMautomatonTargets"," NAMESPACE DICOMautomaton::","# Packaging ","set(CPACK_GENERATOR \"DEB\")","#set(CPACK_PACKAGE_NAME \"dicomautomaton\")","string(TIMESTAMP INVOCATION_TIMESTAMP \"%Y%m%d.%H%M%S\") # For a time-based version number.","set(CPACK_PACKAGE_VERSION \"${INVOCATION_TIMESTAMP}\")","set(CPACK_STRIP_FILES TRUE)","#set(CPACK_DEBIAN_PACKAGE_ARCHITECTURE \"amd64\") # i386, amd64, armel, armhf, ...","set(CPACK_PACKAGE_DESCRIPTION_SUMMARY \"Various tools for medical physics applications.\")","set(CPACK_PACKAGE_CONTACT \"hdeanclark@gmail.com\")","set(CPACK_PACKAGE_MAINTAINER \"Haley Clark \")","set(CPACK_DEBIAN_PACKAGE_SECTION \"Science\")","# Build and runtime dependency package lists are defined centrally in","# cmake/PackageLists.cmake. The DCMA_DEBIAN_BUILD_DEPS variable","# is populated there and used here directly.","# Note: none of the SYCL external dependencies seem to be packaged for Debian (yet).","list(JOIN DCMA_DEBIAN_BUILD_DEPS \", \" CPACK_DEBIAN_PACKAGE_DEPENDS)","list(JOIN DCMA_DEBIAN_RECOMMENDED_DEPS \", \" CPACK_DEBIAN_PACKAGE_RECOMMENDS)","include(CPack)",[1502,1503,1504,1505,1506,1507,1508,1509,1510,1511,1512,1513,1514],{"_964":46,"_46":1533},{"_964":1516,"_181":787,"_1011":990,"_1012":-5},{"_964":46,"_46":1532},{"_964":1516,"_181":1005,"_1011":1530,"_1012":1531},{"_964":46,"_46":1529},{"_964":1516,"_181":1005,"_1011":1527,"_1012":1528},{"_964":1516,"_181":1005,"_1011":1525,"_1012":1526},{"_964":1516,"_181":1005,"_1011":1523,"_1012":1524},{"_964":46,"_46":1522},{"_964":1516,"_181":1005,"_1011":1520,"_1012":1521},{"_964":46,"_46":1519},{"_964":1516,"_181":1005,"_1011":1517,"_1012":1518},{"_964":46,"_46":1515},"\n* Committed the changes on the current branch as `c6b5012` and created the requested follow-up PR.\n\n**Testing**\n* ✅ `cmake -P cmake/ExternalDependencyFallbacks.cmake`\n* ✅ `git diff --check -- CMakeLists.txt cmake/ExternalDependencyFallbacks.cmake`","repo_file_citation",163,170,"\n* Changed the GNU GSL FetchContent tag from unavailable `v2.7.1` to valid `v2.7.0`. ",151,160,"\n* Updated fetched GLEW selection to prefer `glew_s` when `BUILD_SHARED_LIBS=OFF`, preserving the previous fallbacks for other target names. ",209,211,128,136,91,93,"\n* Added generated/build include directories for fetched nlopt, SDL2, and libpqxx so object targets can see generated public headers. ",64,74,"\n* Added fetched-CGAL fallback imported targets for `CGAL::CGAL` and `CGAL::CGAL_Core`, including CGAL include propagation and GMP/MPFR linkage. ","**Summary**\n* Bumped the project CMake floor to 3.13 so the existing Wt 4.10.4 fallback can be configured without violating the dependency’s minimum CMake requirement. ",{"_93":355,"_42":85,"_97":355,"_1536":1537,"_1538":1539,"_1540":1541,"_133":-5,"_120":1542},[84],"input_items",[1559,1560,1561,1562,1563,1564,1565,1566,1567,1568,1569],"external_post_config",{"_1543":1544,"_291":292,"_1545":335,"_303":-5,"_984":286,"_1546":-5,"_1547":1548,"_1549":1550,"_1551":-5,"_1552":-5,"_1553":1554,"_1555":15,"_1556":59,"_1557":54,"_1558":15},"user_model_slug","slug",1781819302.980495,"installation_id",140826434,"pr_number","review_trigger","comment_id",4746393041,"comment_type","issue","pr_write_guard_token","pending_pr_reaction_id","pending_comment_reaction_id",371996683,"comment_if_no_findings","comment_on_error","share_url","is_parallel_review",{"_93":480,"_97":355,"_474":1591},{"_342":343,"_344":345,"_1588":349,"_1589":130,"_351":-5,"_93":1590},{"_93":1570,"_344":1587,"_181":-5,"_1572":-5,"_1573":-5},{"_93":1570,"_344":1586,"_181":1005,"_1572":1575,"_1573":1520},{"_93":1570,"_344":1584,"_181":1005,"_1572":1575,"_1573":1585},{"_93":1570,"_344":1582,"_181":1005,"_1572":1575,"_1573":1583},{"_93":1570,"_344":1581,"_181":1005,"_1572":1575,"_1573":1530},{"_93":1570,"_344":1579,"_181":1005,"_1572":1575,"_1573":1580},{"_93":1570,"_344":1577,"_181":1005,"_1572":1575,"_1573":1578},{"_93":1570,"_344":1574,"_181":1005,"_1572":1575,"_1573":1576},{"_93":1570,"_344":1571,"_181":-5,"_1572":-5,"_1573":-5},"pull_request_comment","\n### 💡 Codex Review\n\nHere are some automated review suggestions for this pull request.\n\n**Reviewed commit:** `fdf86fbfd5`\n \n\n

ℹ️ About Codex in GitHub

","side","line","**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Select GLEW's static target for static fallback builds**\n\nWhen `BUILD_SHARED_LIBS=OFF`, this project defines `GLEW_STATIC` and adds `-static`, but the fetched GLEW CMake creates the static target as `glew_s`, not `libglew_static` (see https://raw.githubusercontent.com/nigels-com/glew/glew-2.2.0/build/cmake/CMakeLists.txt). This branch therefore falls through to the shared `glew` target even in static builds, so fallback SDL/GLEW configurations either link the wrong library variant or fail under the static link flags.\n\nUseful? React with 👍 / 👎.","RIGHT",142,"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Honor the project's CMake 3.12 floor for Wt fallback**\n\nThis project still advertises `cmake_minimum_required(VERSION 3.12.0)`, but the selected Wt 4.10.4 source declares `cmake_minimum_required(VERSION 3.13...3.22)` in its top-level CMakeLists (https://raw.githubusercontent.com/emweb/wt/4.10.4/CMakeLists.txt). Users on the supported CMake 3.12 path only hit this when system Wt is absent and `WITH_FETCHCONTENT_FALLBACK=ON`, where the new fallback now fails during `add_subdirectory(wt)`; either the project minimum needs to move up or the fallback needs a compatible Wt source.\n\nUseful? React with 👍 / 👎.",239,"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Expose SDL's generated config headers to object targets**\n\nThe fetched SDL2 CMake build deliberately puts `${SDL2_BINARY_DIR}/include` and its generated config include directory before the source include directory and defines `USING_GENERATED_CONFIG_H` (https://raw.githubusercontent.com/libsdl-org/SDL/release-2.30.12/CMakeLists.txt), but this fallback only propagates `${SDL2_SOURCE_DIR}/include` through `dcma_compile_settings`. Project object files that include `` then pick up SDL's source `SDL_config.h`/minimal config instead of the generated platform config used to build SDL itself, which can compile consumers with declarations that do not match the fetched library.\n\nUseful? React with 👍 / 👎.",121,"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Create CGAL imported targets after fetching CGAL**\n\nIn the CGAL fallback path, `add_subdirectory()` configures CGAL's build tree but does not itself make `CGAL::CGAL`/`CGAL::CGAL_Core` available to the parent project; CGAL defines those imported targets from its generated `CGALConfig.cmake` (see https://raw.githubusercontent.com/CGAL/cgal/v5.6.1/Installation/lib/cmake/CGAL/CGALConfig.cmake). With system CGAL missing and fallback enabled, the later `target_link_libraries(... CGAL::CGAL CGAL::CGAL_Core)` entries therefore fail at generation unless this helper also loads the generated package config or creates equivalent targets.\n\nUseful? 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