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⚙️ Run configuration

\\n> \\n> **Configuration used**: Path: .coderabbit.yaml\\n> \\n> **Review profile**: CHILL\\n> \\n> **Plan**: Pro\\n> \\n> **Run ID**: `7ce88871-f11f-4f23-9d73-9fbeaf8286d6`\\n> \\n>

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📥 Commits

\\n> \\n> Reviewing files that changed from the base of the PR and between f1b3a5f7d5b70186e131628863f06436c7fa584b and 93aee12af4f3ce139e7764688a10212aa9fc9bcb.\\n> \\n>

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📒 Files selected for processing (13)

\\n> \\n> * `.github/actions/holmes-setup/action.yml`\\n> * `.github/workflows/wesley-holmes.yml`\\n> * `CONTRIBUTING.md`\\n> * `docs/README.md`\\n> * `docs/topics/README.md`\\n> * `docs/topics/compiler-boundary.md`\\n> * `docs/topics/contributing/triage.md`\\n> * `docs/topics/holmes-ci.md`\\n> * `docs/topics/project-manifests.md`\\n> * `docs/topics/releases.md`\\n> * `docs/topics/validation.md`\\n> * `docs/truth-manifest.json`\\n> * `test/ci-workflows.bats`\\n> \\n>

\\n> \\n> ```ascii\\n> _____________________________________________________________\\n> < Oompa Loompa doompadee doo, I've got a code review for you. >\\n> -------------------------------------------------------------\\n> \\\\\\n> \\\\ (\\\\__/)\\n> (•ㅅ•)\\n> / 　づ\\n> ```\\n\\n\\n\\n\\n\\n

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📝 Walkthrough

\\n\\n## Walkthrough\\nAdds project-manifest parsing and validation, a new `wesley config` CLI surface, and manifest-aware schema defaults. HOLMES CI now detects multiple schema sets, runs HOLMES/WATSON/MORIARTY per set, and groups schema-scoped reports into PR comments, with matching docs and tests.\\n\\n## Changes\\n**Manifest and HOLMES matrix rollout**\\n\\n|Layer / File(s)|Summary|\\n|---|---|\\n|**Manifest core and validation**
`crates/wesley-core/src/domain/*.rs`, `crates/wesley-core/src/lib.rs`, `crates/wesley-core/tests/project_manifest.rs`, `docs/reference/project-manifest.md`, `wesley.config.json`|`ProjectManifest` now loads JSON/YAML, validates schema/target rules, resolves changed schemas, and exposes the new manifest shape through core exports, tests, docs, and the root example config.|\\n|**Config CLI and reference docs**
`crates/wesley-cli/src/main.rs`, `crates/wesley-cli/tests/cli.rs`, `docs/reference/cli.md`, `docs/GUIDE.md`, `docs/guides/quick-start.md`, `README.md`|`wesley config validate`, `inspect`, and `changed-schemas` are wired into the CLI, schema commands can fall back to the manifest, and the CLI reference and quick-start examples are updated.|\\n|**HOLMES matrix workflow**
`.github/workflows/wesley-holmes.yml`, `packages/wesley-holmes/src/*.mjs`, `packages/wesley-holmes/test/pr-comment.test.mjs`, `test/ci-workflows.bats`, `docs/architecture/holmes-*.md`, `CHANGELOG.md`|The HOLMES workflow now selects schema sets, fans out per-schema HOLMES/WATSON/MORIARTY jobs, stores schema-scoped artifacts, and loads grouped report sets for multi-schema PR comments.|\\n|**Module authoring and fixtures**
`CONTRIBUTING.md`, `docs/README.md`, `docs/build-artifacts.md`, `docs/guides/extending.md`, `docs/guides/generator-plugins.md`, `docs/guides/module-authoring.md`, `docs/truth-manifest.json`, `test/domain-empty-boundary.bats`, `test/fixtures/extensions/fixture-zoo/*`, `README.md`, `CHANGELOG.md`|Module-authoring guidance, fixture-zoo descriptors, onboarding notes, navigation docs, and artifact references are updated around descriptor-only extensions and manifest-oriented metadata. |\\n\\n## Sequence Diagram(s)\\n```mermaid\\nsequenceDiagram\\n participant GH as GitHub Actions workflow\\n participant CLI as wesley-cli\\n participant MP as wesley-core::project_manifest\\n participant HOLMES as holmes-investigate / watson-verify / moriarty-predict\\n participant PRC as packages/wesley-holmes/src/pr-comment-cli.mjs\\n participant PRM as packages/wesley-holmes/src/pr-comment.mjs\\n\\n GH->>CLI: config changed-schemas --json\\n CLI->>MP: load_project_manifest / select_changed_schema_paths\\n MP-->>CLI: schema_sets, selected_count\\n GH->>HOLMES: matrix schema_set jobs\\n HOLMES-->>GH: reports-by-schema// artifacts\\n GH->>PRC: comment-report with grouped report sets\\n PRC->>PRM: buildHolmesMultiSchemaComment\\n```\\n\\n## Estimated code review effort\\n🎯 4 (Complex) | ⏱️ ~60 minutes\\n\\n## Possibly related issues\\n- flyingrobots/wesley#125 — Adds the project-manifest/config CLI surface and the related docs path this issue targets.\\n- flyingrobots/wesley#231 — Implements the config-driven schema selection flow with `schemaPaths`, `bundleDir`, `rebuildOnGlobs`, `commentMode`, and dashboard fields.\\n- flyingrobots/wesley#648 — Adds `wesley config changed-schemas` plus tests for schema selection output and bundle-dir selection.\\n- flyingrobots/wesley#223 — Extends the HOLMES workflow from single-schema auto-detection to multi-schema matrix execution.\\n- flyingrobots/wesley#229 — Changes `.github/workflows/wesley-holmes.yml` to use changed-schema detection and bundle-dir wiring for CI execution.\\n- flyingrobots/wesley#625 — Reworks the HOLMES workflow to read manifest-selected schema sets and aggregate per-schema artifacts.\\n- flyingrobots/wesley#192 — Updates HOLMES CI/docs boundaries, dashboard references, and grouped report/comment handling.\\n\\n## Possibly related PRs\\n- [flyingrobots/wesley#467](https://github.com/flyingrobots/wesley/pull/467) — Changes the HOLMES PR comment pipeline that this PR extends with grouped multi-schema report handling.\\n\\n## Suggested labels\\n`feature`, `enhancement`\\n\\n## Poem\\n> I hopped through manifests, neat and bright, \\n> Then schema sets danced in matrix light. \\n> HOLMES, WATSON, MORIARTY chimed, \\n> And PR comments were neatly lined. \\n> A carrot-cheered bunny says: \\\"Hop, deploy!\\\"\\n\\n

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🚥 Pre-merge checks | ✅ 3 | ❌ 2

\\n\\n### ❌ Failed checks (2 warnings)\\n\\n| Check name | Status | Explanation | Resolution |\\n| :----------------: | :--------- | :------------------------------------------------------------------------------------------------------------------------------------------------------------ | :----------------------------------------------------------------------------------------------------------------------------------------------------------- |\\n| Description check | ⚠️ Warning | The description covers summary, domain boundary, issues, and validation, but omits many required template sections like linked issue, why, risk, and backout. | Add the missing template sections: linked issue, branch check, why, changes, risk, backout, testing details, evidence, tracker hygiene, and checklist items. |\\n| Docstring Coverage | ⚠️ Warning | Docstring coverage is 25.42% which is insufficient. The required threshold is 80.00%. | Write docstrings for the functions missing them to satisfy the coverage threshold. |\\n\\n

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✅ Passed checks (3 passed)

\\n\\n| Check name | Status | Explanation |\\n| :------------------------: | :------- | :---------------------------------------------------------------------------------------------- |\\n| Title check | ✅ Passed | The title matches the main change set by calling out the v0.2.0 project manifest platform work. |\\n| Linked Issues check | ✅ Passed | Check skipped because no linked issues were found for this pull request. |\\n| Out of Scope Changes check | ✅ Passed | Check skipped because no linked issues were found for this pull request. |\\n\\n

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✨ Finishing Touches

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📝 Generate docstrings

\\n\\n- [ ] Create stacked PR\\n- [ ] Commit on current branch\\n\\n

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🧪 Generate unit tests (beta)

\\n\\n- [ ] Create PR with unit tests\\n- [ ] Commit unit tests in branch `v0.2.0/platform-batch`\\n\\n

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\\n\\n\\n\\n\\n---\\n\\nThanks for using [CodeRabbit](https://coderabbit.ai?utm_source=oss&utm_medium=github&utm_campaign=flyingrobots/wesley&utm_content=650)! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.\\n\\n

\\n

❤️ Share

\\n\\n- [X](https://twitter.com/intent/tweet?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A&url=https%3A//coderabbit.ai)\\n- [Mastodon](https://mastodon.social/share?text=I%20just%20used%20%40coderabbitai%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20the%20proprietary%20code.%20Check%20it%20out%3A%20https%3A%2F%2Fcoderabbit.ai)\\n- [Reddit](https://www.reddit.com/submit?title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&text=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code.%20Check%20it%20out%3A%20https%3A//coderabbit.ai)\\n- [LinkedIn](https://www.linkedin.com/sharing/share-offsite/?url=https%3A%2F%2Fcoderabbit.ai&mini=true&title=Great%20tool%20for%20code%20review%20-%20CodeRabbit&summary=I%20just%20used%20CodeRabbit%20for%20my%20code%20review%2C%20and%20it%27s%20fantastic%21%20It%27s%20free%20for%20OSS%20and%20offers%20a%20free%20trial%20for%20proprietary%20code)\\n\\n

\\n\\n\\n_{Comment `@coderabbitai help` to get the list of available commands.}\\n\\n\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"\\n\\n# 🔍 The Case of Pull Request #650\\n\\n## Schema Sets\\n\\n- `ecommerce`\\n- `reference`\\n\\n\\n\\n## Schema Set `ecommerce`\\n\\n### Plain-English Readout\\n\\n- **Holmes (evidence investigation)**: Holmes says this change looks ready to ship.\\n- **Watson (independent verification)**: Watson found verification concerns. Most important concern: No evidence citations were available for trust analysis.\\n- **Moriarty (trend forecast)**: Moriarty does not have enough historical data yet to forecast readiness.\\n\\n## Suggested next actions\\n\\n1. Resolve Watson’s verification concerns before trusting the Holmes verdict as final.\\n\\n

🕵️ SHA-lock HOLMES full report for ecommerce (click to expand)

\\n\\n### 🕵️ SHA-lock HOLMES Investigation\\n\\n- Generated: 2026-01-01T00:00:00.000Z\\n- Commit SHA: b13e9ee2cab1eed967743547e674370837699a6e\\n- Bundle Version: 2.0.0\\n\\n> ⚠️ Evidence valid only for commit `b13e9ee`\\n\\n## 🔍 Executive Deduction\\n\\n\\\"Watson, after careful examination of the evidence, I deduce...\\\"\\n\\n**Weighted Completion**: ██████████ 95.0%\\n**Scores**: SCS 95.0% · TCI 90.0% · MRI 10.0%\\n**Verification Status**: 2 claims verified\\n**Citation Quality**: 2 exact · 0 whole-file · 0 coarse\\n**Evidence Trust**: strong\\n**Ship Verdict**: ELEMENTARY\\n\\n## 🧩 SCS Breakdown\\n\\n| Component | Score | Coverage |\\n|-----------|-------|----------|\\n| Sql | 100.0% | 1.00/1.00 |\\n| Types | 100.0% | 1.00/1.00 |\\n| Validation | 100.0% | 1.00/1.00 |\\n| Tests | 100.0% | 1.00/1.00 |\\n\\n## 🧪 TCI Breakdown\\n\\n| Component | Score | Coverage | Note |\\n|-----------|-------|----------|------|\\n| Unit Constraints | 100.0% | 1/1 | N/A |\\n| Unit Rls | 100.0% | 1/1 | N/A |\\n| Integration Relations | 100.0% | 1/1 | N/A |\\n| E2e Ops | 90.0% | 9/10 | N/A |\\n\\n## ⚠️ MRI Breakdown\\n\\n| Component | Risk Share | Points | Count |\\n|-----------|------------|--------|-------|\\n| Drops | 0.0% | 0 | 0 |\\n| Renames Without Uid | 0.0% | 0 | 0 |\\n| Add Not Null Without Default | 100.0% | 1 | 1 |\\n| Non Concurrent Indexes | 0.0% | 0 | 0 |\\n\\n## 📊 The Weight of Evidence\\n\\n\\\"Observe, Watson, how not all features carry equal importance...\\\"\\n\\n| Element | Weight | Status | Evidence | Strength | Deduction |\\n|---------|--------|--------|----------|----------|-----------|\\n| schema | 5 | ✅ Exact SQL & tests | test/fixtures/examples/.wesley-cache/ecommerce/shipme-fixture/tests.sql:1-1@b13e9ee | exact | Elementary! |\\n\\n## 🚪 Security & Performance Gates\\n\\n\\\"Elementary security measures, Watson...\\\"\\n\\n| Gate | Status | Evidence | Holmes's Ruling |\\n|------|--------|----------|-----------------|\\n| Migration Risk | ✅ | MRI: 10.0% | \\\"Trivial risk\\\" |\\n| Test Coverage | ✅ | TCI: 90.0% | \\\"Excellent coverage\\\" |\\n| Sensitive Fields | ✅ | 0 fields | \\\"All secured\\\" |\\n| Evidence Quality | ✅ | 2 exact · 0 whole-file · 0 coarse | \\\"All 2 citations resolve to exact line spans.\\\" |\\n\\n## 📋 The Verdict\\n\\n✅ **ELEMENTARY** - Ship immediately!\\n\\\"The evidence is conclusive. No mysteries remain.\\\"\\n\\nSigned and sealed,\\n- S. Holmes, Consulting Detective\\n\\n[END OF INVESTIGATION FOR COMMIT b13e9ee]\\n\\n## 🧵 Command Run\\n\\n- Run ID: run-a1c50e24-2cd3-4050-97f0-1482ee4cdb9c\\n- Transmutation: holmes-investigate\\n- Command: investigate\\n- Status: completed\\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\\n\\n

\\n\\n

🩺 Dr. WATSON full report for ecommerce (click to expand)

\\n\\n### 🩺 Dr. Watson's Independent Verification Report\\n\\n_Medical Examination of Evidence_\\n\\n- Examination Date: 2026-06-26T08:45:54.923Z\\n- Patient SHA: b13e9ee2cab1eed967743547e674370837699a6e\\n\\n## 🔬 Citation Verification\\n\\n\\\"Let me examine each piece of evidence independently...\\\"\\n\\n- **Citations Examined**: 2\\n- **Verified**: 0 ✅\\n- **Failed**: 0 ❌\\n- **Unable to Verify**: 2\\n- **Exact Subrange Citations**: 0\\n- **Whole-file Citations**: 0\\n- **Coarse Citations**: 0\\n- **Evidence Trust**: missing\\n- **Trust Note**: No evidence citations were available for trust analysis.\\n\\n**Verification Rate**: 0.0%\\n\\n## 📊 Mathematical Verification\\n\\n\\\"I shall recalculate Holmes's arithmetic...\\\"\\n\\nHolmes claimed SCS: 95.0%\\nWatson calculates: 100.0%\\nDifference: ⚠️ Significant\\n\\n## 🔍 Consistency Analysis\\n\\n\\\"Checking for contradictions in Holmes's deductions...\\\"\\n\\n✅ No logical inconsistencies detected\\n\\n## 🩺 Dr. Watson's Medical Opinion\\n\\n**VERIFICATION: CONCERNS NOTED** ⚠️\\n\\n\\\"While Holmes's methods are generally sound, I have noted some\\\"\\n\\\"discrepancies that warrant further investigation. No evidence citations were available for trust analysis.\\\"\\n\\nRespectfully submitted,\\n- Dr. J. Watson, M.D.\\n Medical Examiner & Verification Specialist\\n\\n## 🧵 Command Run\\n\\n- Run ID: run-b8505e7a-e0f1-45dc-8ce7-c1f365c698af\\n- Transmutation: watson-verify\\n- Command: verify\\n- Status: completed\\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\\n\\n

\\n\\n

🔮 Professor MORIARTY full report for ecommerce (click to expand)

\\n\\n### 🧠 Professor Moriarty's Temporal Predictions\\n\\n_The Mathematics of Inevitability_\\n\\n- Analysis Date: 2026-06-26T08:46:23.100Z\\n\\n**INSUFFICIENT DATA**\\n\\n> \\\"I require at least two data points to predict the future.\\\"\\n> \\\"Run Wesley generate multiple times to build history.\\\"\\n\\n## 🧵 Command Run\\n\\n- Run ID: run-cd57008d-a2be-4fd1-be28-a41d32c1c400\\n- Transmutation: moriarty-predict\\n- Command: predict\\n- Status: completed\\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\\n\\n

\\n\\n---\\n\\n## Schema Set `reference`\\n\\n### Plain-English Readout\\n\\n- **Holmes (evidence investigation)**: Holmes says this change looks ready to ship.\\n- **Watson (independent verification)**: Watson found verification concerns. Most important concern: No evidence citations were available for trust analysis.\\n- **Moriarty (trend forecast)**: Moriarty does not have enough historical data yet to forecast readiness.\\n\\n## Suggested next actions\\n\\n1. Resolve Watson’s verification concerns before trusting the Holmes verdict as final.\\n\\n

🕵️ SHA-lock HOLMES full report for reference (click to expand)

\\n\\n### 🕵️ SHA-lock HOLMES Investigation\\n\\n- Generated: 2026-01-01T00:00:00.000Z\\n- Commit SHA: b13e9ee2cab1eed967743547e674370837699a6e\\n- Bundle Version: 2.0.0\\n\\n> ⚠️ Evidence valid only for commit `b13e9ee`\\n\\n## 🔍 Executive Deduction\\n\\n\\\"Watson, after careful examination of the evidence, I deduce...\\\"\\n\\n**Weighted Completion**: ██████████ 95.0%\\n**Scores**: SCS 95.0% · TCI 90.0% · MRI 10.0%\\n**Verification Status**: 2 claims verified\\n**Citation Quality**: 2 exact · 0 whole-file · 0 coarse\\n**Evidence Trust**: strong\\n**Ship Verdict**: ELEMENTARY\\n\\n## 🧩 SCS Breakdown\\n\\n| Component | Score | Coverage |\\n|-----------|-------|----------|\\n| Sql | 100.0% | 1.00/1.00 |\\n| Types | 100.0% | 1.00/1.00 |\\n| Validation | 100.0% | 1.00/1.00 |\\n| Tests | 100.0% | 1.00/1.00 |\\n\\n## 🧪 TCI Breakdown\\n\\n| Component | Score | Coverage | Note |\\n|-----------|-------|----------|------|\\n| Unit Constraints | 100.0% | 1/1 | N/A |\\n| Unit Rls | 100.0% | 1/1 | N/A |\\n| Integration Relations | 100.0% | 1/1 | N/A |\\n| E2e Ops | 90.0% | 9/10 | N/A |\\n\\n## ⚠️ MRI Breakdown\\n\\n| Component | Risk Share | Points | Count |\\n|-----------|------------|--------|-------|\\n| Drops | 0.0% | 0 | 0 |\\n| Renames Without Uid | 0.0% | 0 | 0 |\\n| Add Not Null Without Default | 100.0% | 1 | 1 |\\n| Non Concurrent Indexes | 0.0% | 0 | 0 |\\n\\n## 📊 The Weight of Evidence\\n\\n\\\"Observe, Watson, how not all features carry equal importance...\\\"\\n\\n| Element | Weight | Status | Evidence | Strength | Deduction |\\n|---------|--------|--------|----------|----------|-----------|\\n| schema | 5 | ✅ Exact SQL & tests | test/fixtures/examples/.wesley-cache/reference/shipme-fixture/tests.sql:1-1@b13e9ee | exact | Elementary! |\\n\\n## 🚪 Security & Performance Gates\\n\\n\\\"Elementary security measures, Watson...\\\"\\n\\n| Gate | Status | Evidence | Holmes's Ruling |\\n|------|--------|----------|-----------------|\\n| Migration Risk | ✅ | MRI: 10.0% | \\\"Trivial risk\\\" |\\n| Test Coverage | ✅ | TCI: 90.0% | \\\"Excellent coverage\\\" |\\n| Sensitive Fields | ✅ | 0 fields | \\\"All secured\\\" |\\n| Evidence Quality | ✅ | 2 exact · 0 whole-file · 0 coarse | \\\"All 2 citations resolve to exact line spans.\\\" |\\n\\n## 📋 The Verdict\\n\\n✅ **ELEMENTARY** - Ship immediately!\\n\\\"The evidence is conclusive. No mysteries remain.\\\"\\n\\nSigned and sealed,\\n- S. Holmes, Consulting Detective\\n\\n[END OF INVESTIGATION FOR COMMIT b13e9ee]\\n\\n## 🧵 Command Run\\n\\n- Run ID: run-0c6a7e9d-075c-4a84-b536-f67e84f3c65f\\n- Transmutation: holmes-investigate\\n- Command: investigate\\n- Status: completed\\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\\n\\n

\\n\\n

🩺 Dr. WATSON full report for reference (click to expand)

\\n\\n### 🩺 Dr. Watson's Independent Verification Report\\n\\n_Medical Examination of Evidence_\\n\\n- Examination Date: 2026-06-26T08:45:49.878Z\\n- Patient SHA: b13e9ee2cab1eed967743547e674370837699a6e\\n\\n## 🔬 Citation Verification\\n\\n\\\"Let me examine each piece of evidence independently...\\\"\\n\\n- **Citations Examined**: 2\\n- **Verified**: 0 ✅\\n- **Failed**: 0 ❌\\n- **Unable to Verify**: 2\\n- **Exact Subrange Citations**: 0\\n- **Whole-file Citations**: 0\\n- **Coarse Citations**: 0\\n- **Evidence Trust**: missing\\n- **Trust Note**: No evidence citations were available for trust analysis.\\n\\n**Verification Rate**: 0.0%\\n\\n## 📊 Mathematical Verification\\n\\n\\\"I shall recalculate Holmes's arithmetic...\\\"\\n\\nHolmes claimed SCS: 95.0%\\nWatson calculates: 100.0%\\nDifference: ⚠️ Significant\\n\\n## 🔍 Consistency Analysis\\n\\n\\\"Checking for contradictions in Holmes's deductions...\\\"\\n\\n✅ No logical inconsistencies detected\\n\\n## 🩺 Dr. Watson's Medical Opinion\\n\\n**VERIFICATION: CONCERNS NOTED** ⚠️\\n\\n\\\"While Holmes's methods are generally sound, I have noted some\\\"\\n\\\"discrepancies that warrant further investigation. No evidence citations were available for trust analysis.\\\"\\n\\nRespectfully submitted,\\n- Dr. J. Watson, M.D.\\n Medical Examiner & Verification Specialist\\n\\n## 🧵 Command Run\\n\\n- Run ID: run-dcf25f73-3962-4dc0-8576-af9437a421bb\\n- Transmutation: watson-verify\\n- Command: verify\\n- Status: completed\\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\\n\\n

\\n\\n

🔮 Professor MORIARTY full report for reference (click to expand)

\\n\\n### 🧠 Professor Moriarty's Temporal Predictions\\n\\n_The Mathematics of Inevitability_\\n\\n- Analysis Date: 2026-06-26T08:46:30.660Z\\n\\n**INSUFFICIENT DATA**\\n\\n> \\\"I require at least two data points to predict the future.\\\"\\n> \\\"Run Wesley generate multiple times to build history.\\\"\\n\\n## 🧵 Command Run\\n\\n- Run ID: run-a0743f25-8297-4af3-94a7-52a172a14b52\\n- Transmutation: moriarty-predict\\n- Command: predict\\n- Status: completed\\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\\n\\n

\\n\\n---\\n\\n

📚 Glossary (what the Holmes terms mean)

\\n\\n- **HOLMES**: Wesley’s main evidence investigation. It decides whether the cited proof is strong enough to justify shipping this commit.\\n- **WATSON**: An independent verification pass. It checks Holmes’s citations and score math instead of trusting them blindly.\\n- **MORIARTY**: A readiness forecast over time. It is advisory trend analysis, not the release gate itself.\\n- **Schema coverage score (SCS)**: How much of the schema has direct supporting evidence across generated artifacts and cited proof.\\n- **Test confidence index (TCI)**: How much test evidence exists for constraints, policies, relationships, and operations.\\n- **Migration risk index (MRI)**: How risky the schema change is to roll out. Lower is better.\\n- **Evidence trust**: Whether the report is backed by exact citations, whole-file citations, or coarse references. Weak trust means the claim may be directionally right but not specific enough to trust blindly.\\n- **Citation quality**: A count of exact line-span citations versus whole-file or coarse references.\\n- **ELEMENTARY**: Ready to ship based on the current evidence.\\n- **REQUIRES INVESTIGATION**: More work or review is needed before shipping.\\n- **YOU SHALL NOT PASS**: Do not ship this change in its current state.\\n\\n

\\n\\n---\\n\\n_Machine-readable reports are grouped by schema set in workflow artifacts._\\n\\n---\\n\\n*Filed at 221B Repository Street*\\n\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"\\n### 🚢 SHIPME\\n\\n[SHIPME] PASS · HOLMES fixture · sha b13e9ee\\n\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"\\n### 💡 Codex Review\\n\\nHere are some automated review suggestions for this pull request.\\n\\n**Reviewed commit:** `f1b3a5f7d5`\\n \\n\\n

ℹ️ About Codex in GitHub

\\n
\\n\\n[Your team has set up Codex to review pull requests in this repo](https://chatgpt.com/codex/cloud/settings/general). Reviews are triggered when you\\n- Open a pull request for review\\n- Mark a draft as ready\\n- Comment \\\"@codex review\\\".\\n\\nIf Codex has suggestions, it will comment; otherwise it will react with 👍.\\n\\n\\n\\n\\nCodex can also answer questions or update the PR. Try commenting \\\"@codex address that feedback\\\".\\n \\n

\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Fail on invalid manifests before falling back**\\n\\nWhen `wesley.config.json` exists but is malformed or fails validation, `wesley config inspect` exits non-zero just like the no-manifest case, so this `else` takes the legacy detector path and can let CI proceed while ignoring the bad manifest and schema-set matrix. Since this repo now commits a manifest, fall back only when no manifest is present and fail on parse/validation errors.\\n\\nUseful? React with 👍 / 👎.\",\"path\":\".github/workflows/wesley-holmes.yml\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Isolate Moriarty cache per schema set**\\n\\nWith more than one schema set, each matrix leg passes a different `bundle-dir` into `holmes-setup`, but that action caches `${{ inputs.bundle-dir }}/history.json` under the shared key `moriarty-${{ github.sha }}` and restore prefixes that do not include `matrix.schema_set.id`. This lets the previous run's history for one schema be restored into another schema's bundle, so Moriarty forecasts can be computed from the wrong schema history; include the schema id in the cache key or avoid sharing the cache for matrix runs.\\n\\nUseful? React with 👍 / 👎.\",\"path\":\".github/workflows/wesley-holmes.yml\",\"side\":\"RIGHT\",\"line\":321}{\"type\":\"pull_request_comment\",\"body\":\"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Honor silent PR comment mode**\\n\\nWhen a manifest sets `commentMode` to `silent`, this job still runs for every selected PR because the condition only checks the event and schema count, and the detect job never propagates the manifest's comment mode. That makes the newly documented `silent` mode ineffective and still creates or updates a HOLMES PR comment.\\n\\nUseful? React with 👍 / 👎.\",\"path\":\".github/workflows/wesley-holmes.yml\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Resolve changed schemas against the manifest directory**\\n\\nFor supported non-root manifests such as `sub/wesley.config.json` or `.wesley/config.json`, schema commands resolve `schemaPaths` relative to the manifest path, but `changed-schemas` passes the raw manifest into selection. A repo-relative Git diff like `sub/schema.graphql` will not match a manifest-relative `schema.graphql`, and the emitted matrix path would also be wrong for the workflow; normalize schema paths and bundle dirs relative to `manifest_path` before selecting.\\n\\nUseful? React with 👍 / 👎.\",\"path\":\"crates/wesley-cli/src/main.rs\",\"side\":\"RIGHT\",\"line\":461}{\"type\":\"pull_request_comment\",\"body\":\"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Reject parent-directory schema ids**\\n\\nThis validator allows ids made only of dots, including `.` and `..`, but multi-schema bundle isolation later builds paths as `bundleDir/`. A manifest with id `..` therefore validates and resolves to the parent of the configured bundle directory, so generation can write reports outside the intended schema cache instead of keeping bundles isolated.\\n\\nUseful? React with 👍 / 👎.\",\"path\":\"crates/wesley-core/src/domain/project_manifest.rs\",\"side\":\"RIGHT\",\"line\":405}{\"type\":\"pull_request_comment\",\"body\":\"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Preserve dot bundle directories**\\n\\nWhen a manifest uses `bundleDir: \\\".\\\"` (or another value that normalizes to empty), this normalization makes multi-schema bundle paths render as absolute-looking roots like `/core` and single-schema paths as an empty string. That breaks the promised `bundleDir/` isolation and can make the workflow write or look for bundles outside the intended project cache; keep `.` as the current directory or reject it explicitly.\\n\\nUseful? React with 👍 / 👎.\",\"path\":\"crates/wesley-core/src/domain/project_manifest.rs\",\"side\":\"RIGHT\",\"line\":400}{\"type\":\"pull_request_comment\",\"body\":\"_🎯 Functional Correctness_ | _🟠 Major_ | _⚡ Quick win_\\n\\n**Fail invalid manifests instead of silently falling back.**\\n\\nIf `wesley config inspect --json` exits non-zero because `wesley.config.json` is malformed, Line 61 drops into the legacy branch and the workflow keeps going with heuristic schema discovery. That bypasses the manifest-driven gate this PR is introducing and can run HOLMES against the wrong schema set. Only \\\"manifest absent\\\" should fall back; parse/validation errors should stop the job.\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn @.github/workflows/wesley-holmes.yml around lines 61 - 77, The fallback in\\nthe workflow step around the `wesley config inspect --json` check is too broad\\nand currently treats malformed `wesley.config.json` the same as a missing\\nmanifest. Update the conditional handling in this job so `wesley config inspect`\\nparse/validation failures stop the workflow instead of entering the legacy\\nschema-detection branch, and reserve the fallback only for the manifest-absent\\ncase; keep the existing `changed-schemas` and `wesley-selected.json` path for\\nvalid manifests.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\\n\\n✅ Addressed in commits c1b6ea7 to a12c552\",\"path\":\".github/workflows/wesley-holmes.yml\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"_🗄️ Data Integrity & Integration_ | _🟠 Major_\\n\\n

\\n

🧩 Analysis chain

\\n\\n🏁 Script executed:\\n\\n```shell\\ncat -n .github/workflows/wesley-holmes.yml | sed -n '269,274p'\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 450\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\ncat -n .github/workflows/wesley-holmes.yml | sed -n '441,446p'\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 452\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nfind . -type f -name \\\"*.py\\\" -o -name \\\"*.ts\\\" -o -name \\\"*.js\\\" | xargs grep -l \\\"loadHolmesSuiteReportSets\\\" 2>/dev/null | head -5\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 157\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nfind . -type f \\\$ -name \\\"*.py\\\" -o -name \\\"*.ts\\\" -o -name \\\"*.js\\\" -o -name \\\"*.sh\\\" \\\$ -exec grep -l \\\"loadHolmesSuiteReportSets\\\\|reports-by-schema\\\" {} \\\\; 2>/dev/null\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 157\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nrg \\\"loadHolmesSuiteReportSets\\\" --type py --type ts --type js --type go --type rs\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 184\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nls -la reports-by-schema/ 2>/dev/null || echo \\\"Directory not found in current state\\\"\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 194\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nfind . -type d -name \\\"reports-by-schema\\\" 2>/dev/null\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 157\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nrg \\\"schema_set\\\" .github/workflows/wesley-holmes.yml -B 5 -A 2 | head -50\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 1834\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nrg \\\"reports-by-schema\\\" .github/workflows/wesley-holmes.yml -B 3 -A 3\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 1611\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\ngrep -n \\\"loadHolmesSuiteReportSets\\\\|HolmesSuite\\\\|reports-dir\\\" --include=\\\"*.py\\\" --include=\\\"*.ts\\\" --include=\\\"*.js\\\" -r . 2>/dev/null | head -20\\n```\\n\\nRepository: flyingrobots/wesley\\n\\nLength of output: 157\\n\\n---\\n\\n\\n\\n

\\n\\n**Upload each schema directory, not the shared `reports-by-schema` parent.**\\n\\nEach job creates `reports-by-schema/${{ matrix.schema_set.id }}` and copies reports there, then uploads the entire `reports-by-schema` directory. When downloaded, this places reports under `reports/reports-by-schema//...` instead of `reports//...`, breaking tools that expect schema IDs as immediate children of the reports root.\\n\\nThe same issue affects three locations in this workflow:\\n- Lines 218-223 (holmes-report)\\n- Lines 269-274 (watson-report)\\n- Lines 441-446 (moriarty-report)\\n\\n

\\n

Suggested fix

\\n\\nChange the `path` in each `actions/upload-artifact` step from:\\n```diff\\n- path: reports-by-schema\\n+ path: reports-by-schema/${{ matrix.schema_set.id }}\\n```\\n

\\n\\nUpdate all three upload steps to target the schema-specific subdirectory directly.\\n\\n\\n\\n

\\n

📝 Committable suggestion

\\n\\n\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn @.github/workflows/wesley-holmes.yml around lines 218 - 223, The artifact\\nupload steps are saving the shared reports-by-schema parent directory instead of\\neach schema’s own folder, which causes an extra path level on download. Update\\nthe three actions/upload-artifact steps for holmes-report, watson-report, and\\nmoriarty-report to use the schema-specific reports-by-schema/${{\\nmatrix.schema_set.id }} path so the extracted artifacts place each schema ID\\ndirectly under the reports root. Use the existing matrix.schema_set.id value and\\nkeep the upload naming unchanged.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\",\"path\":\".github/workflows/wesley-holmes.yml\",\"side\":\"RIGHT\",\"line\":242}{\"type\":\"pull_request_comment\",\"body\":\"_🎯 Functional Correctness_ | _🟠 Major_ | _🏗️ Heavy lift_\\n\\n**Rebase manifest-relative paths before `changed-schemas` selection.**\\n\\nLine 459 still has the manifest path available, but Line 461 feeds raw manifest values into `select_changed_schema_paths()`. That means a supported manifest like `.wesley/config.json` can resolve `schema lower` correctly via `resolve_manifest_relative_path()`, yet `config changed-schemas` will miss the same schema because Git-style changed paths are compared against unresolved entries like `../schemas/core/**`.\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@crates/wesley-cli/src/main.rs` around lines 457 - 466, The changed-schemas\\nbranch in main is comparing raw manifest entries against Git changed paths, so\\nmanifest-relative schemas can be missed. Use the existing manifest_path from\\nload_manifest_from_options() to rebase or resolve schema paths before calling\\nselect_changed_schema_paths(), reusing the same path resolution behavior as\\nresolve_manifest_relative_path() so ConfigChangedSchemasReport is built from\\nnormalized paths rather than unresolved manifest-relative values.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\",\"path\":\"crates/wesley-cli/src/main.rs\",\"side\":\"RIGHT\",\"line\":466}{\"type\":\"pull_request_comment\",\"body\":\"_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\\n\\n**Reject multi-document YAML manifests instead of ignoring trailing documents.**\\n\\n`YamlLoader::load_from_str()` can return more than one document, but this path accepts `documents.first()` and drops the rest. A manifest with a valid first document and stale second document will silently validate against the wrong input.\\n \\n

\\n

Suggested fix

\\n\\n```diff\\n Err(json_error) => {\\n let documents = YamlLoader::load_from_str(source).map_err(|yaml_error| {\\n ProjectManifestError::Parse(format!(\\n \\\"not valid JSON ({json_error}); not valid YAML ({yaml_error})\\\"\\n ))\\n })?;\\n+ if documents.len() != 1 {\\n+ return Err(ProjectManifestError::Parse(\\n+ \\\"Wesley manifests must contain exactly one YAML document\\\".to_owned(),\\n+ ));\\n+ }\\n let Some(document) = documents.first() else {\\n return Err(ProjectManifestError::Parse(\\n \\\"YAML source contained no document\\\".to_owned(),\\n ));\\n };\\n```\\n

\\n\\n\\n\\n

\\n

📝 Committable suggestion

\\n\\n> ‼️ **IMPORTANT**\\n> Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.\\n\\n```suggestion\\nfn parse_manifest_value(source: &str) -> Result {\\n match serde_json::from_str::(source) {\\n Ok(value) => Ok(value),\\n Err(json_error) => {\\n let documents = YamlLoader::load_from_str(source).map_err(|yaml_error| {\\n ProjectManifestError::Parse(format!(\\n \\\"not valid JSON ({json_error}); not valid YAML ({yaml_error})\\\"\\n ))\\n })?;\\n if documents.len() != 1 {\\n return Err(ProjectManifestError::Parse(\\n \\\"Wesley manifests must contain exactly one YAML document\\\".to_owned(),\\n ));\\n }\\n let Some(document) = documents.first() else {\\n return Err(ProjectManifestError::Parse(\\n \\\"YAML source contained no document\\\".to_owned(),\\n ));\\n };\\n yaml_to_json(document)\\n }\\n }\\n}\\n```\\n\\n

\\n\\n\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@crates/wesley-core/src/domain/project_manifest.rs` around lines 416 - 430,\\nparse_manifest_value currently accepts the first YAML document from\\nYamlLoader::load_from_str and silently ignores any trailing documents, so update\\nthis fallback to reject multi-document YAML manifests explicitly. After loading,\\ncheck the document count before using documents.first(), and return a\\nProjectManifestError::Parse when more than one document is present; keep the\\nexisting JSON/YAML error handling and yaml_to_json path otherwise.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\",\"path\":\"crates/wesley-core/src/domain/project_manifest.rs\",\"side\":\"RIGHT\",\"line\":430}{\"type\":\"pull_request_comment\",\"body\":\"_🗄️ Data Integrity & Integration_ | _🟠 Major_ | _⚡ Quick win_\\n\\n**Preserve absolute and current-directory paths during normalization.**\\n\\nThis helper strips the leading slash from absolute paths and normalizes `\\\".\\\"`/`\\\"./\\\"` to an empty string. That turns values like `bundleDir: \\\"/tmp/wesley-cache\\\"` into `tmp/wesley-cache` and `bundleDir: \\\".\\\"` into an empty base, which then produces wrong bundle directories such as `/core` for multi-schema manifests.\\n \\n

\\n

Suggested fix

\\n\\n```diff\\n fn normalize_path(path: &str) -> String {\\n- path.trim()\\n- .trim_start_matches(\\\"./\\\")\\n- .replace('\\\\\\\\', \\\"/\\\")\\n- .split('/')\\n- .filter(|segment| !segment.is_empty() && *segment != \\\".\\\")\\n- .collect::>()\\n- .join(\\\"/\\\")\\n+ let path = path.trim().replace('\\\\\\\\', \\\"/\\\");\\n+ if matches!(path.as_str(), \\\".\\\" | \\\"./\\\") {\\n+ return \\\".\\\".to_owned();\\n+ }\\n+\\n+ let is_absolute = path.starts_with('/');\\n+ let normalized = path\\n+ .trim_start_matches(\\\"./\\\")\\n+ .split('/')\\n+ .filter(|segment| !segment.is_empty() && *segment != \\\".\\\")\\n+ .collect::>()\\n+ .join(\\\"/\\\");\\n+\\n+ if is_absolute && !normalized.is_empty() {\\n+ format!(\\\"/{normalized}\\\")\\n+ } else {\\n+ normalized\\n+ }\\n }\\n```\\n

\\n\\n\\n\\n

\\n

📝 Committable suggestion

\\n\\n> ‼️ **IMPORTANT**\\n> Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.\\n\\n```suggestion\\nfn normalize_path(path: &str) -> String {\\n let path = path.trim().replace('\\\\\\\\', \\\"/\\\");\\n if matches!(path.as_str(), \\\".\\\" | \\\"./\\\") {\\n return \\\".\\\".to_owned();\\n }\\n\\n let is_absolute = path.starts_with('/');\\n let normalized = path\\n .trim_start_matches(\\\"./\\\")\\n .split('/')\\n .filter(|segment| !segment.is_empty() && *segment != \\\".\\\")\\n .collect::>()\\n .join(\\\"/\\\");\\n\\n if is_absolute && !normalized.is_empty() {\\n format!(\\\"/{normalized}\\\")\\n } else {\\n normalized\\n }\\n}\\n```\\n\\n

\\n\\n\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@crates/wesley-core/src/domain/project_manifest.rs` around lines 493 - 500,\\nThe normalize_path helper is over-normalizing by stripping leading slashes and\\ncollapsing \\\".\\\"/\\\"./\\\" into an empty path, which breaks absolute and\\ncurrent-directory bundleDir values. Update normalize_path in project_manifest.rs\\nto preserve absolute paths unchanged and keep \\\".\\\"/\\\"./\\\" as a valid\\ncurrent-directory base while still normalizing separators and redundant internal\\nsegments; make sure the logic in normalize_path and any callers that build\\nbundle directories continue to work for multi-schema manifests.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\",\"path\":\"crates/wesley-core/src/domain/project_manifest.rs\",\"side\":\"RIGHT\",\"line\":500}{\"type\":\"pull_request_comment\",\"body\":\"_🗄️ Data Integrity & Integration_ | _🟠 Major_ | _🏗️ Heavy lift_\\n\\n**Don't infer the schema list solely from downloaded artifacts.**\\n\\n`loadHolmesSuiteReportSets()` can only enumerate schema IDs that produced directories on disk. If one matrix leg fails before its report upload, that schema set disappears from `reportSets`, so the aggregate comment never names the failing schema even though the overall job status is failed. Please thread the selected IDs from `detect-schema-sets.outputs.schema_sets` into this CLI and synthesize placeholder sections for missing sets.\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@packages/wesley-holmes/src/pr-comment-cli.mjs` around lines 16 - 38, The CLI\\ncurrently derives schema sets only from loadHolmesSuiteReportSets(), which\\nmisses any selected schemas that failed before uploading artifacts. Update main\\nand its call path to accept the selected IDs from\\ndetect-schema-sets.outputs.schema_sets, then use those IDs to build the\\naggregate comment so every expected schema appears. In particular, preserve the\\nexisting buildHolmesMultiSchemaComment flow but synthesize placeholder sections\\nfor schema IDs that are missing from reportSets, instead of inferring the list\\nsolely from downloaded artifacts.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\",\"path\":\"packages/wesley-holmes/src/pr-comment-cli.mjs\",\"side\":\"RIGHT\",\"line\":38}{\"type\":\"pull_request_comment\",\"body\":\"_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\\n\\n**Assert `descriptorOnly` per fixture instead of by total count.**\\n\\nThis count can still stay at `3` if one descriptor drops the field and another file adds an extra match, so the guard can pass with a broken fixture. Check each `fixture-extension.json` individually.\\n\\n \\n

\\n

Suggested change

\\n\\n```diff\\n- run bash -lc \\\"grep -R '\\\\\\\"descriptorOnly\\\\\\\": true' test/fixtures/extensions/fixture-zoo | wc -l\\\"\\n- assert_success\\n- [ \\\"$output\\\" -eq 3 ]\\n+ for fixture in \\\\\\n+ test/fixtures/extensions/fixture-zoo/compiler-heavy/fixture-extension.json \\\\\\n+ test/fixtures/extensions/fixture-zoo/evidence-heavy/fixture-extension.json \\\\\\n+ test/fixtures/extensions/fixture-zoo/blade-heavy/fixture-extension.json\\n+ do\\n+ run rg -n '\\\"descriptorOnly\\\": true' \\\"$fixture\\\"\\n+ assert_success\\n+ done\\n```\\n

\\n\\n\\n\\n

\\n

📝 Committable suggestion

\\n\\n\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@test/domain-empty-boundary.bats` around lines 120 - 122, The current test in\\nthe domain-empty-boundary Bats file only checks a total grep count for\\ndescriptorOnly, which can still pass if one fixture loses the field and another\\ngains an extra match. Update the test to inspect each fixture-extension.json\\nindividually in fixture-zoo, using the existing test block around the\\ngrep/assert_success logic, so each descriptor-only fixture is verified directly\\ninstead of relying on an aggregate count.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\",\"path\":\"test/domain-empty-boundary.bats\",\"side\":\"RIGHT\",\"line\":122}{\"type\":\"pull_request_comment\",\"body\":\"**Actionable comments posted: 7**\\n\\n

\\n

🧹 Nitpick comments (2)

\\n\\n
\\n
docs/build-artifacts.md (1)
\\n\\n`5-13`: _📐 Maintainability & Code Quality_ | _🔵 Trivial_ | _💤 Low value_\\n\\n**Clarify whether external targets write to `out/` and `.wesley-cache/`.**\\n\\nThe updated descriptions suggest external targets produce artifacts in `.wesley-cache/` and `out/`. If targets declare their own `outputDir` in the project manifest, the `out/` description may overgeneralize. Consider tightening to \\\"Native emit commands or external targets that use the default output directory.\\\"\\n\\n
\\n
🤖 Prompt for AI Agents
\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@docs/build-artifacts.md` around lines 5 - 13, The `build-artifacts.md` table\\novergeneralizes `out/` and `.wesley-cache/` for external targets; update the\\ndescriptions so they only claim artifacts are written there when the target uses\\nthe default output location. Tighten the wording for the `out/` and\\n`.wesley-cache/` rows to distinguish native emit commands from external targets\\nwith custom `outputDir` settings, keeping the entries aligned with how the\\nartifact locations are actually produced.\\n```\\n\\n
\\n\\n\\n\\n
\\n
\\n
test/ci-workflows.bats (1)
\\n\\n`190-215`: _📐 Maintainability & Code Quality_ | _🔵 Trivial_ | _💤 Low value_\\n\\n**Verify exact occurrence counts in workflow file.**\\n\\nThe test asserts specific grep occurrence counts (4 for `schema_set` matrix, 6 for `reports-by-schema`). These counts are fragile if the workflow file structure changes. Consider whether these should be exact equality (`-eq`) or minimum thresholds (`-ge`) for maintainability, or add a comment explaining why these specific counts are expected.\\n\\n\\n\\n\\n\\n```shell\\n#!/bin/bash\\n# Verify the actual occurrence counts in the workflow file\\ngrep -c 'schema_set: \\\\${{ fromJson(needs.detect-schema-sets.outputs.schema_sets) }}' .github/workflows/wesley-holmes.yml\\ngrep -c 'reports-by-schema/\\\\${{ matrix.schema_set.id }}' .github/workflows/wesley-holmes.yml\\ngrep -c 'steps.detect.outputs.selected_count' .github/workflows/wesley-holmes.yml\\n```\\n\\n
\\n
🤖 Prompt for AI Agents
\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@test/ci-workflows.bats` around lines 190 - 215, The workflow test in bats is\\nasserting brittle exact grep counts for `schema_set` and `reports-by-schema` in\\n`test/ci-workflows.bats`. Update the checks around `wesley-holmes.yml` to use\\nmore maintainable thresholds where appropriate, or add a clear inline comment\\nexplaining why the current exact counts in the `HOLMES workflow uses Wesley\\nproject manifest for selective schema sets` test are intentionally fixed. Keep\\nthe existing symbol references like `detect-schema-sets`, `schema_set`, and\\n`steps.detect.outputs.selected_count` so the intent remains tied to the workflow\\nstructure.\\n```\\n\\n
\\n\\n\\n\\n
\\n\\n

\\n\\n

\\n

🤖 Prompt for all review comments with AI agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nInline comments:\\nIn @.github/workflows/wesley-holmes.yml:\\n- Around line 61-77: The fallback in the workflow step around the `wesley config\\ninspect --json` check is too broad and currently treats malformed\\n`wesley.config.json` the same as a missing manifest. Update the conditional\\nhandling in this job so `wesley config inspect` parse/validation failures stop\\nthe workflow instead of entering the legacy schema-detection branch, and reserve\\nthe fallback only for the manifest-absent case; keep the existing\\n`changed-schemas` and `wesley-selected.json` path for valid manifests.\\n- Around line 218-223: The artifact upload steps are saving the shared\\nreports-by-schema parent directory instead of each schema’s own folder, which\\ncauses an extra path level on download. Update the three actions/upload-artifact\\nsteps for holmes-report, watson-report, and moriarty-report to use the\\nschema-specific reports-by-schema/${{ matrix.schema_set.id }} path so the\\nextracted artifacts place each schema ID directly under the reports root. Use\\nthe existing matrix.schema_set.id value and keep the upload naming unchanged.\\n\\nIn `@crates/wesley-cli/src/main.rs`:\\n- Around line 457-466: The changed-schemas branch in main is comparing raw\\nmanifest entries against Git changed paths, so manifest-relative schemas can be\\nmissed. Use the existing manifest_path from load_manifest_from_options() to\\nrebase or resolve schema paths before calling select_changed_schema_paths(),\\nreusing the same path resolution behavior as resolve_manifest_relative_path() so\\nConfigChangedSchemasReport is built from normalized paths rather than unresolved\\nmanifest-relative values.\\n\\nIn `@crates/wesley-core/src/domain/project_manifest.rs`:\\n- Around line 416-430: parse_manifest_value currently accepts the first YAML\\ndocument from YamlLoader::load_from_str and silently ignores any trailing\\ndocuments, so update this fallback to reject multi-document YAML manifests\\nexplicitly. After loading, check the document count before using\\ndocuments.first(), and return a ProjectManifestError::Parse when more than one\\ndocument is present; keep the existing JSON/YAML error handling and yaml_to_json\\npath otherwise.\\n- Around line 493-500: The normalize_path helper is over-normalizing by\\nstripping leading slashes and collapsing \\\".\\\"/\\\"./\\\" into an empty path, which\\nbreaks absolute and current-directory bundleDir values. Update normalize_path in\\nproject_manifest.rs to preserve absolute paths unchanged and keep \\\".\\\"/\\\"./\\\" as a\\nvalid current-directory base while still normalizing separators and redundant\\ninternal segments; make sure the logic in normalize_path and any callers that\\nbuild bundle directories continue to work for multi-schema manifests.\\n\\nIn `@packages/wesley-holmes/src/pr-comment-cli.mjs`:\\n- Around line 16-38: The CLI currently derives schema sets only from\\nloadHolmesSuiteReportSets(), which misses any selected schemas that failed\\nbefore uploading artifacts. Update main and its call path to accept the selected\\nIDs from detect-schema-sets.outputs.schema_sets, then use those IDs to build the\\naggregate comment so every expected schema appears. In particular, preserve the\\nexisting buildHolmesMultiSchemaComment flow but synthesize placeholder sections\\nfor schema IDs that are missing from reportSets, instead of inferring the list\\nsolely from downloaded artifacts.\\n\\nIn `@test/domain-empty-boundary.bats`:\\n- Around line 120-122: The current test in the domain-empty-boundary Bats file\\nonly checks a total grep count for descriptorOnly, which can still pass if one\\nfixture loses the field and another gains an extra match. Update the test to\\ninspect each fixture-extension.json individually in fixture-zoo, using the\\nexisting test block around the grep/assert_success logic, so each\\ndescriptor-only fixture is verified directly instead of relying on an aggregate\\ncount.\\n\\n---\\n\\nNitpick comments:\\nIn `@docs/build-artifacts.md`:\\n- Around line 5-13: The `build-artifacts.md` table overgeneralizes `out/` and\\n`.wesley-cache/` for external targets; update the descriptions so they only\\nclaim artifacts are written there when the target uses the default output\\nlocation. Tighten the wording for the `out/` and `.wesley-cache/` rows to\\ndistinguish native emit commands from external targets with custom `outputDir`\\nsettings, keeping the entries aligned with how the artifact locations are\\nactually produced.\\n\\nIn `@test/ci-workflows.bats`:\\n- Around line 190-215: The workflow test in bats is asserting brittle exact grep\\ncounts for `schema_set` and `reports-by-schema` in `test/ci-workflows.bats`.\\nUpdate the checks around `wesley-holmes.yml` to use more maintainable thresholds\\nwhere appropriate, or add a clear inline comment explaining why the current\\nexact counts in the `HOLMES workflow uses Wesley project manifest for selective\\nschema sets` test are intentionally fixed. Keep the existing symbol references\\nlike `detect-schema-sets`, `schema_set`, and\\n`steps.detect.outputs.selected_count` so the intent remains tied to the workflow\\nstructure.\\n```\\n\\n

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\\n\\nFix all unresolved CodeRabbit comments on this PR:\\n\\n- [ ] Push a commit to this branch (recommended)\\n- [ ] Create a new PR with the fixes\\n\\n

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ℹ️ Review info

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⚙️ Run configuration

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📥 Commits

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\\n\\n* `.github/workflows/wesley-holmes.yml`\\n* `CHANGELOG.md`\\n* `CONTRIBUTING.md`\\n* `README.md`\\n* `crates/wesley-cli/src/main.rs`\\n* `crates/wesley-cli/tests/cli.rs`\\n* `crates/wesley-core/src/domain/mod.rs`\\n* `crates/wesley-core/src/domain/project_manifest.rs`\\n* `crates/wesley-core/src/lib.rs`\\n* `crates/wesley-core/tests/project_manifest.rs`\\n* `docs/GUIDE.md`\\n* `docs/README.md`\\n* `docs/architecture/holmes-architecture.md`\\n* `docs/architecture/holmes-integration.md`\\n* `docs/build-artifacts.md`\\n* `docs/guides/extending.md`\\n* `docs/guides/generator-plugins.md`\\n* `docs/guides/module-authoring.md`\\n* `docs/guides/quick-start.md`\\n* `docs/reference/cli.md`\\n* `docs/reference/project-manifest.md`\\n* `docs/truth-manifest.json`\\n* `packages/wesley-holmes/src/cli.mjs`\\n* `packages/wesley-holmes/src/pr-comment-cli.mjs`\\n* `packages/wesley-holmes/src/pr-comment.mjs`\\n* `packages/wesley-holmes/test/pr-comment.test.mjs`\\n* `test/ci-workflows.bats`\\n* `test/domain-empty-boundary.bats`\\n* `test/fixtures/extensions/fixture-zoo/README.md`\\n* `test/fixtures/extensions/fixture-zoo/blade-heavy/fixture-extension.json`\\n* `test/fixtures/extensions/fixture-zoo/compiler-heavy/fixture-extension.json`\\n* `test/fixtures/extensions/fixture-zoo/evidence-heavy/fixture-extension.json`\\n* `wesley.config.json`\\n\\n

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\\n\\n\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"## docs/topics Audit\\n\\nI re-ran the manual `docs/topics/` release gate after the PR was opened.\\n\\n| Scope | Result | Evidence |\\n| --- | --- | --- |\\n| Tracked `docs/topics/` files | 1/1 audited | `docs/topics/contributing/triage.md` |\\n| Accuracy | Gate met after remediation | Updated stale current lane list to include `v0.4.0` and `v0.5.0`; verified open issues have exactly one `triage:*` or `vX.Y.Z` scheduling label. |\\n| Coverage | Gate met after remediation | Added related-authority links from the topic page to label taxonomy, release policy, and release checklist. |\\n| GitHub label hygiene | Clean after remediation | Removed stale `lane:v0.2.0` from #646 after rationale comment, then deleted the obsolete label. Verified no `lane:*` labels remain. |\\n\\nValidation:\\n\\n- `cargo xtask docs-check`\\n- `BATS_LIB_PATH=test/vendor bats -t test/release-governance.bats`\\n- `git diff --check`\\n- GitHub label audit: no `lane:*` labels remain\\n- Open issue scheduling audit: no open issue lacks or exceeds one scheduling-state label\\n\\nFollow-up commit: `c1b6ea7b docs(topics): refresh triage lane audit`.\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"## docs/topics Coverage Correction\\n\\nCorrection to the earlier topic audit: auditing only the tracked `docs/topics/contributing/triage.md` file was not enough. The release gate also requires coverage of release-relevant contributor/operator workflows, and a directory containing only triage did not meet that bar.\\n\\nRemediation commit: `d95de82a docs(topics): add operator workflow coverage`\\n\\nAdded topic coverage:\\n\\n| Topic Page | Workflow Covered |\\n| --- | --- |\\n| `docs/topics/README.md` | Topic index and coverage rule |\\n| `docs/topics/compiler-boundary.md` | Domain-free Wesley ownership and extension placement |\\n| `docs/topics/project-manifests.md` | Manifest-driven schema sets, changed-schema selection, and target metadata |\\n| `docs/topics/validation.md` | PR/release local validation command selection |\\n| `docs/topics/holmes-ci.md` | Manifest-driven HOLMES CI and evidence artifacts |\\n| `docs/topics/releases.md` | Tagged-main release flow and human release gates |\\n| `docs/topics/contributing/triage.md` | Issue triage and version-lane scheduling |\\n\\nSignposts updated:\\n\\n- `docs/README.md` now links to `docs/topics/README.md`\\n- `CONTRIBUTING.md` now links to the topic index\\n- `docs/truth-manifest.json` now tracks the new current topic pages\\n\\nValidation:\\n\\n- `cargo xtask docs-check`\\n- `BATS_LIB_PATH=test/vendor bats -t test/release-governance.bats`\\n- `pnpm exec prettier --check CONTRIBUTING.md docs/README.md docs/truth-manifest.json docs/topics/README.md docs/topics/compiler-boundary.md docs/topics/project-manifests.md docs/topics/validation.md docs/topics/holmes-ci.md docs/topics/releases.md`\\n- `git diff --check`\\n- pre-push `cargo xtask preflight`\\n\\nWith this correction, `docs/topics/` now covers the release-relevant contributor/operator workflows for this PR instead of merely auditing the one existing triage page.\",\"path\":null,\"side\":null,\"line\":null}","text_elements",[],{"_464":920,"_445":446,"_466":452},{"_467":921,"_469":-5,"_42":-5,"_470":-5,"_471":-5,"_97":328,"_93":473},[922],{"_46":916,"_93":923},"input_text",{"_464":925,"_445":446,"_466":452},{"_467":926,"_469":-5,"_42":-5,"_470":-5,"_471":-5,"_97":328,"_93":473},[927,928],{"_46":930,"_93":923},{"_46":929,"_93":923},"\n /workspace/wesley\n bash\n 2026-06-26\n Etc/UTC\n","# AGENTS.md instructions for /workspace/wesley\n\n\n# AGENTS\n\nThis guide is for AI agents and human operators recovering context in the Wesley repository.\n\n## Git Rules\n\n- **NEVER** amend commits.\n- **NEVER** rebase or force-push.\n- **NEVER** push to `main` without explicit permission.\n- Always use standard commits and regular pushes.\n\n## Documentation & Planning Map\n\nDo not audit the repository by recursively walking the filesystem. Follow the authoritative manifests:\n\n### 1. The Entrance\n\n- **`README.md`**: Public front door, core value prop, and quick start.\n- **`docs/GUIDE.md`**: Orientation, fast path, and system orchestration.\n\n### 2. The Bedrock\n\n- **`docs/ARCHITECTURE.md`**: Authoritative structural reference (Base Platform, Modules, Pipeline).\n- **`docs/VISION.md`**: Core tenets and the \"Trustworthy Change\" mission.\n- **`docs/METHOD.md`**: Repo work doctrine (GitHub Issues, evidence ledger, Cycle loop).\n\n### 3. The Direction\n\n- **`docs/BEARING.md`**: Current execution gravity and active tensions.\n- **`docs/design/README.md`**: Active design packets and structural doctrine.\n- **GitHub Issues**: The active source of truth for pending work. Use\n `triage:*` labels for unscheduled intake and `vX.Y.Z` labels for work\n scheduled into a named future release. See\n **`docs/topics/contributing/triage.md`**.\n- **`docs/method/graveyard/github-issue-migration/`**: Historical evidence for the former filesystem backlog migration.\n\n### 4. The Proof\n\n- **`CHANGELOG.md`**: Historical truth of merged behavior.\n- **`docs/audit/`**: Structural health and due diligence reports.\n\n## Context Recovery Protocol\n\nWhen starting a new session or recovering from context loss:\n\n1. **Read `docs/BEARING.md`** to find the current execution gravity.\n2. **Read `docs/METHOD.md`** to understand the work doctrine.\n3. **Check scheduled release lanes and triage queues** using\n `docs/topics/contributing/triage.md`.\n4. **Check `git log -n 5` and `git status`** to verify the current branch state.\n\n## End of Turn Checklist\n\nAfter altering files:\n\n1. **Verify Truth**: Ensure documentation is updated if behavior or structure changed.\n2. **Log Debt**: Add follow-on work as GitHub Issues with either a `triage:*`\n intake label or a concrete `vX.Y.Z` release label.\n3. **Commit**: Use focused, conventional commit messages. Propose a draft before executing.\n4. **Validate**: Run `pnpm run preflight`.\n\n---\n\n**The goal is inevitably. Every feature is defined by its tests.**\n\n",{"_464":932,"_445":446,"_466":452},{"_467":933,"_469":-5,"_42":-5,"_470":-5,"_471":-5,"_97":934,"_93":473},[935,936],"developer",{"_46":938,"_93":923},{"_46":937,"_93":923},"\n## Skills\nA skill is a set of local instructions to follow that is stored in a `SKILL.md` file. Below is the list of skills that can be used. Each entry includes a name, description, and file path so you can open the source for full instructions when using a specific skill.\n### Available skills\n- imagegen: Generate or edit raster images when the task benefits from AI-created bitmap visuals such as photos, illustrations, textures, sprites, mockups, or transparent-background cutouts. Use when Codex should create a brand-new image, transform an existing image, or derive visual variants from references, and the output should be a bitmap asset rather than repo-native code or vector. Do not use when the task is better handled by editing existing SVG/vector/code-native assets, extending an established icon or logo system, or building the visual directly in HTML/CSS/canvas. (file: /opt/codex/skills/.system/imagegen/SKILL.md)\n- openai-docs: Use when the user asks how to build with OpenAI products or APIs and needs up-to-date official documentation with citations, help choosing the latest model for a use case, or model upgrade and prompt-upgrade guidance; prioritize OpenAI docs MCP tools, use bundled references only as helper context, and restrict any fallback browsing to official OpenAI domains. (file: /opt/codex/skills/.system/openai-docs/SKILL.md)\n- plugin-creator: Create and scaffold plugin directories for Codex with a required `.codex-plugin/plugin.json`, optional plugin folders/files, and baseline placeholders you can edit before publishing or testing. Use when Codex needs to create a new local plugin, add optional plugin structure, or generate or update repo-root `.agents/plugins/marketplace.json` entries for plugin ordering and availability metadata. (file: /opt/codex/skills/.system/plugin-creator/SKILL.md)\n- skill-creator: Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations. (file: /opt/codex/skills/.system/skill-creator/SKILL.md)\n- skill-installer: Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos). (file: /opt/codex/skills/.system/skill-installer/SKILL.md)\n### How to use skills\n- Discovery: The list above is the skills available in this session (name + description + file path). Skill bodies live on disk at the listed paths.\n- Trigger rules: If the user names a skill (with `$SkillName` or plain text) OR the task clearly matches a skill's description shown above, you must use that skill for that turn. Multiple mentions mean use them all. Do not carry skills across turns unless re-mentioned.\n- Missing/blocked: If a named skill isn't in the list or the path can't be read, say so briefly and continue with the best fallback.\n- How to use a skill (progressive disclosure):\n 1) After deciding to use a skill, open its `SKILL.md`. Read only enough to follow the workflow.\n 2) When `SKILL.md` references relative paths (e.g., `scripts/foo.py`), resolve them relative to the skill directory listed above first, and only consider other paths if needed.\n 3) If `SKILL.md` points to extra folders such as `references/`, load only the specific files needed for the request; don't bulk-load everything.\n 4) If `scripts/` exist, prefer running or patching them instead of retyping large code blocks.\n 5) If `assets/` or templates exist, reuse them instead of recreating from scratch.\n- Coordination and sequencing:\n - If multiple skills apply, choose the minimal set that covers the request and state the order you'll use them.\n - Announce which skill(s) you're using and why (one short line). If you skip an obvious skill, say why.\n- Context hygiene:\n - Keep context small: summarize long sections instead of pasting them; only load extra files when needed.\n - Avoid deep reference-chasing: prefer opening only files directly linked from `SKILL.md` unless you're blocked.\n - When variants exist (frameworks, providers, domains), pick only the relevant reference file(s) and note that choice.\n- Safety and fallback: If a skill can't be applied cleanly (missing files, unclear instructions), state the issue, pick the next-best approach, and continue.\n","\nFilesystem sandboxing defines which files can be read or written. `sandbox_mode` is `danger-full-access`: No filesystem sandboxing - all commands are permitted. Network access is enabled.\nApproval policy is currently never. Do not provide the `sandbox_permissions` for any reason, commands will be rejected.\n","turn/started",{"_445":446,"_88":941},{"_104":-5,"_42":452,"_453":942,"_455":456,"_457":943},[],"inProgress",{"_457":945,"_445":446},{"_946":947,"_93":948},"activeFlags",[],"active","thread/started",{"_951":952},"thread",{"_953":-5,"_954":-5,"_955":956,"_957":456,"_529":530,"_958":15,"_959":-5,"_960":-5,"_42":446,"_961":962,"_185":-5,"_963":-5,"_163":964,"_965":213,"_966":-5,"_534":967,"_457":968,"_969":-5,"_78":970,"_971":456},"agentNickname","agentRole","cliVersion","0.128.0","createdAt","ephemeral","forkedFromId","gitInfo","modelProvider","openai","parentThreadId","/opt/codex/sessions/2026/06/26/rollout-2026-06-26T08-47-56-019f031d-40de-7a71-b5d6-88112bcdef21.jsonl","preview","recencyAt","vscode",{"_93":461},"threadSource",[],"updatedAt",[],"messages",[975],{"_42":976,"_977":978,"_979":980,"_981":980,"_467":982,"_457":983,"_469":-5,"_984":32,"_985":986,"_987":988,"_989":-5},"6a99b976-d3f4-4a13-af2c-d2c99320a040","author",{"_97":328,"_185":-5,"_985":998},"create_time",1782463675.839624,"update_time",{"_994":46,"_995":996},"finished_successfully","weight","metadata",{"_990":991},"recipient","all","channel","l1239dk1",{"_992":993},"inline_comments",[],"content_type","parts",[997],"@codex self-audit issue discovered during Code Lawyer pass:\n\n| Severity | Source | File | Lines | Issue | Planned handling |\n| --- | --- | --- | --- | --- | --- |\n| P4 | Self | `.github/workflows/wesley-holmes.yml` | 596-604 | `comment-report` runs a stray Moriarty history-fetch step after posting the PR comment. It is outside the prediction job boundary and adds needless workflow work. | Remove after the active P2 review blockers are cleared unless a higher-severity interaction appears. |\nfeat(platform): add v0.2.0 project manifest platform\n\n## Summary\n\nThis PR lands the v0.2.0 platform batch as one reviewed unit after completing all 11/11 scheduled implementation slices.\n\nIt adds a domain-free Wesley project manifest layer (`wesley.project-manifest/v1`) for schema-set discovery, changed-schema selection, target metadata, and bundle isolation. It also wires Holmes CI to use the manifest-driven schema-set matrix, updates the Holmes PR comment aggregation for schema-scoped reports, adds a descriptor-only fixture module zoo, and refreshes the public docs/onramp around project manifests and module authoring.\n\nRelease gate #625 remains intentionally open until this PR is merged to `main` and v0.2.0 is released from a signed tag.\n\n## Completed implementation issues\n\n- #125\n- #138\n- #139\n- #231\n- #235\n- #574\n- #576\n- #585\n- #64\n\nEach issue received a rationale comment before closure. The remaining open v0.2.0 issue is #625.\n\n## Domain Boundary\n\nThis keeps Wesley domain-free: Wesley owns GraphQL structure -> deterministic/extensible IR and generic project metadata. Downstream extensions own semantics, renderers, runtimes, database targets, and product-specific meaning.\n\n## Validation\n\n- `pnpm run preflight`\n- `cargo test -p wesley-cli --test cli`\n- `cargo test -p wesley-core --test project_manifest`\n- `node --test packages/wesley-holmes/test/pr-comment.test.mjs`\n- `BATS_LIB_PATH=test/vendor bats -t test/ci-workflows.bats`\n- `BATS_LIB_PATH=test/vendor bats -t test/domain-empty-boundary.bats`\n- `cargo xtask docs-check`\n- `node scripts/check-doc-cli-commands.mjs`\n- `pnpm lint`\n- `git diff --check`\n- pre-push selected gate passed on publish\n\n\n\n\n## Summary by CodeRabbit\n\n* **New Features**\n * Added project manifest support, including validation and schema-set selection from changed files.\n * Introduced multi-schema CI handling and grouped PR comments for per-schema results.\n * Added new CLI commands for inspecting and validating configuration.\n\n* **Documentation**\n * Expanded quick-start, CLI reference, contributor, and architecture docs with project manifest and module-authoring guidance.\n * Added a new reference page for the project manifest format.\n\n* **Bug Fixes**\n * Improved schema command behavior when a schema is not explicitly provided.\n\n\n\n\n\n[![Review Change Stack](https://storage.googleapis.com/coderabbit_public_assets/review-stack-in-coderabbit-ui.svg)](https://app.coderabbit.ai/change-stack/flyingrobots/wesley/pull/650?utm_source=github_walkthrough&utm_medium=github&utm_campaign=change_stack)\n\n\n\n\n> [!NOTE]\n> Currently processing new changes in this PR. This may take a few minutes, please wait...\n> \n>

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\n> \n> * `.github/actions/holmes-setup/action.yml`\n> * `.github/workflows/wesley-holmes.yml`\n> * `CONTRIBUTING.md`\n> * `docs/README.md`\n> * `docs/topics/README.md`\n> * `docs/topics/compiler-boundary.md`\n> * `docs/topics/contributing/triage.md`\n> * `docs/topics/holmes-ci.md`\n> * `docs/topics/project-manifests.md`\n> * `docs/topics/releases.md`\n> * `docs/topics/validation.md`\n> * `docs/truth-manifest.json`\n> * `test/ci-workflows.bats`\n> \n>

\n> \n> ```ascii\n> _____________________________________________________________\n> < Oompa Loompa doompadee doo, I've got a code review for you. >\n> -------------------------------------------------------------\n> \\\n> \\ (\\__/)\n> (•ㅅ•)\n> / 　づ\n> ```\n\n\n\n\n\n

📝 Walkthrough

\n\n## Walkthrough\nAdds project-manifest parsing and validation, a new `wesley config` CLI surface, and manifest-aware schema defaults. HOLMES CI now detects multiple schema sets, runs HOLMES/WATSON/MORIARTY per set, and groups schema-scoped reports into PR comments, with matching docs and tests.\n\n## Changes\n**Manifest and HOLMES matrix rollout**\n\n|Layer / File(s)|Summary|\n|---|---|\n|**Manifest core and validation**
`crates/wesley-core/src/domain/*.rs`, `crates/wesley-core/src/lib.rs`, `crates/wesley-core/tests/project_manifest.rs`, `docs/reference/project-manifest.md`, `wesley.config.json`|`ProjectManifest` now loads JSON/YAML, validates schema/target rules, resolves changed schemas, and exposes the new manifest shape through core exports, tests, docs, and the root example config.|\n|**Config CLI and reference docs**
`crates/wesley-cli/src/main.rs`, `crates/wesley-cli/tests/cli.rs`, `docs/reference/cli.md`, `docs/GUIDE.md`, `docs/guides/quick-start.md`, `README.md`|`wesley config validate`, `inspect`, and `changed-schemas` are wired into the CLI, schema commands can fall back to the manifest, and the CLI reference and quick-start examples are updated.|\n|**HOLMES matrix workflow**
`.github/workflows/wesley-holmes.yml`, `packages/wesley-holmes/src/*.mjs`, `packages/wesley-holmes/test/pr-comment.test.mjs`, `test/ci-workflows.bats`, `docs/architecture/holmes-*.md`, `CHANGELOG.md`|The HOLMES workflow now selects schema sets, fans out per-schema HOLMES/WATSON/MORIARTY jobs, stores schema-scoped artifacts, and loads grouped report sets for multi-schema PR comments.|\n|**Module authoring and fixtures**
`CONTRIBUTING.md`, `docs/README.md`, `docs/build-artifacts.md`, `docs/guides/extending.md`, `docs/guides/generator-plugins.md`, `docs/guides/module-authoring.md`, `docs/truth-manifest.json`, `test/domain-empty-boundary.bats`, `test/fixtures/extensions/fixture-zoo/*`, `README.md`, `CHANGELOG.md`|Module-authoring guidance, fixture-zoo descriptors, onboarding notes, navigation docs, and artifact references are updated around descriptor-only extensions and manifest-oriented metadata. |\n\n## Sequence Diagram(s)\n```mermaid\nsequenceDiagram\n participant GH as GitHub Actions workflow\n participant CLI as wesley-cli\n participant MP as wesley-core::project_manifest\n participant HOLMES as holmes-investigate / watson-verify / moriarty-predict\n participant PRC as packages/wesley-holmes/src/pr-comment-cli.mjs\n participant PRM as packages/wesley-holmes/src/pr-comment.mjs\n\n GH->>CLI: config changed-schemas --json\n CLI->>MP: load_project_manifest / select_changed_schema_paths\n MP-->>CLI: schema_sets, selected_count\n GH->>HOLMES: matrix schema_set jobs\n HOLMES-->>GH: reports-by-schema// artifacts\n GH->>PRC: comment-report with grouped report sets\n PRC->>PRM: buildHolmesMultiSchemaComment\n```\n\n## Estimated code review effort\n🎯 4 (Complex) | ⏱️ ~60 minutes\n\n## Possibly related issues\n- flyingrobots/wesley#125 — Adds the project-manifest/config CLI surface and the related docs path this issue targets.\n- flyingrobots/wesley#231 — Implements the config-driven schema selection flow with `schemaPaths`, `bundleDir`, `rebuildOnGlobs`, `commentMode`, and dashboard fields.\n- flyingrobots/wesley#648 — Adds `wesley config changed-schemas` plus tests for schema selection output and bundle-dir selection.\n- flyingrobots/wesley#223 — Extends the HOLMES workflow from single-schema auto-detection to multi-schema matrix execution.\n- flyingrobots/wesley#229 — Changes `.github/workflows/wesley-holmes.yml` to use changed-schema detection and bundle-dir wiring for CI execution.\n- flyingrobots/wesley#625 — Reworks the HOLMES workflow to read manifest-selected schema sets and aggregate per-schema artifacts.\n- flyingrobots/wesley#192 — Updates HOLMES CI/docs boundaries, dashboard references, and grouped report/comment handling.\n\n## Possibly related PRs\n- [flyingrobots/wesley#467](https://github.com/flyingrobots/wesley/pull/467) — Changes the HOLMES PR comment pipeline that this PR extends with grouped multi-schema report handling.\n\n## Suggested labels\n`feature`, `enhancement`\n\n## Poem\n> I hopped through manifests, neat and bright, \n> Then schema sets danced in matrix light. \n> HOLMES, WATSON, MORIARTY chimed, \n> And PR comments were neatly lined. \n> A carrot-cheered bunny says: \"Hop, deploy!\"\n\n

\n\n\n\n\n

🚥 Pre-merge checks | ✅ 3 | ❌ 2

\n\n### ❌ Failed checks (2 warnings)\n\n| Check name | Status | Explanation | Resolution |\n| :----------------: | :--------- | :------------------------------------------------------------------------------------------------------------------------------------------------------------ | :----------------------------------------------------------------------------------------------------------------------------------------------------------- |\n| Description check | ⚠️ Warning | The description covers summary, domain boundary, issues, and validation, but omits many required template sections like linked issue, why, risk, and backout. | Add the missing template sections: linked issue, branch check, why, changes, risk, backout, testing details, evidence, tracker hygiene, and checklist items. |\n| Docstring Coverage | ⚠️ Warning | Docstring coverage is 25.42% which is insufficient. The required threshold is 80.00%. | Write docstrings for the functions missing them to satisfy the coverage threshold. |\n\n

✅ Passed checks (3 passed)

\n\n| Check name | Status | Explanation |\n| :------------------------: | :------- | :---------------------------------------------------------------------------------------------- |\n| Title check | ✅ Passed | The title matches the main change set by calling out the v0.2.0 project manifest platform work. |\n| Linked Issues check | ✅ Passed | Check skipped because no linked issues were found for this pull request. |\n| Out of Scope Changes check | ✅ Passed | Check skipped because no linked issues were found for this pull request. |\n\n

\n\n

\n\n\n\n\n

✨ Finishing Touches

\n\n

📝 Generate docstrings

\n\n- [ ] Create stacked PR\n- [ ] Commit on current branch\n\n

🧪 Generate unit tests (beta)

\n\n- [ ] Create PR with unit tests\n- [ ] Commit unit tests in branch `v0.2.0/platform-batch`\n\n

\n\n

\n\n\n\n\n---\n\nThanks for using [CodeRabbit](https://coderabbit.ai?utm_source=oss&utm_medium=github&utm_campaign=flyingrobots/wesley&utm_content=650)! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.\n\n

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\n\n\n_{Comment `@coderabbitai help` to get the list of available commands.}\n\n\n\n\n# 🔍 The Case of Pull Request #650\n\n## Schema Sets\n\n- `ecommerce`\n- `reference`\n\n\n\n## Schema Set `ecommerce`\n\n### Plain-English Readout\n\n- **Holmes (evidence investigation)**: Holmes says this change looks ready to ship.\n- **Watson (independent verification)**: Watson found verification concerns. Most important concern: No evidence citations were available for trust analysis.\n- **Moriarty (trend forecast)**: Moriarty does not have enough historical data yet to forecast readiness.\n\n## Suggested next actions\n\n1. Resolve Watson’s verification concerns before trusting the Holmes verdict as final.\n\n

🕵️ SHA-lock HOLMES full report for ecommerce (click to expand)

\n\n### 🕵️ SHA-lock HOLMES Investigation\n\n- Generated: 2026-01-01T00:00:00.000Z\n- Commit SHA: b13e9ee2cab1eed967743547e674370837699a6e\n- Bundle Version: 2.0.0\n\n> ⚠️ Evidence valid only for commit `b13e9ee`\n\n## 🔍 Executive Deduction\n\n\"Watson, after careful examination of the evidence, I deduce...\"\n\n**Weighted Completion**: ██████████ 95.0%\n**Scores**: SCS 95.0% · TCI 90.0% · MRI 10.0%\n**Verification Status**: 2 claims verified\n**Citation Quality**: 2 exact · 0 whole-file · 0 coarse\n**Evidence Trust**: strong\n**Ship Verdict**: ELEMENTARY\n\n## 🧩 SCS Breakdown\n\n| Component | Score | Coverage |\n|-----------|-------|----------|\n| Sql | 100.0% | 1.00/1.00 |\n| Types | 100.0% | 1.00/1.00 |\n| Validation | 100.0% | 1.00/1.00 |\n| Tests | 100.0% | 1.00/1.00 |\n\n## 🧪 TCI Breakdown\n\n| Component | Score | Coverage | Note |\n|-----------|-------|----------|------|\n| Unit Constraints | 100.0% | 1/1 | N/A |\n| Unit Rls | 100.0% | 1/1 | N/A |\n| Integration Relations | 100.0% | 1/1 | N/A |\n| E2e Ops | 90.0% | 9/10 | N/A |\n\n## ⚠️ MRI Breakdown\n\n| Component | Risk Share | Points | Count |\n|-----------|------------|--------|-------|\n| Drops | 0.0% | 0 | 0 |\n| Renames Without Uid | 0.0% | 0 | 0 |\n| Add Not Null Without Default | 100.0% | 1 | 1 |\n| Non Concurrent Indexes | 0.0% | 0 | 0 |\n\n## 📊 The Weight of Evidence\n\n\"Observe, Watson, how not all features carry equal importance...\"\n\n| Element | Weight | Status | Evidence | Strength | Deduction |\n|---------|--------|--------|----------|----------|-----------|\n| schema | 5 | ✅ Exact SQL & tests | test/fixtures/examples/.wesley-cache/ecommerce/shipme-fixture/tests.sql:1-1@b13e9ee | exact | Elementary! |\n\n## 🚪 Security & Performance Gates\n\n\"Elementary security measures, Watson...\"\n\n| Gate | Status | Evidence | Holmes's Ruling |\n|------|--------|----------|-----------------|\n| Migration Risk | ✅ | MRI: 10.0% | \"Trivial risk\" |\n| Test Coverage | ✅ | TCI: 90.0% | \"Excellent coverage\" |\n| Sensitive Fields | ✅ | 0 fields | \"All secured\" |\n| Evidence Quality | ✅ | 2 exact · 0 whole-file · 0 coarse | \"All 2 citations resolve to exact line spans.\" |\n\n## 📋 The Verdict\n\n✅ **ELEMENTARY** - Ship immediately!\n\"The evidence is conclusive. No mysteries remain.\"\n\nSigned and sealed,\n- S. Holmes, Consulting Detective\n\n[END OF INVESTIGATION FOR COMMIT b13e9ee]\n\n## 🧵 Command Run\n\n- Run ID: run-a1c50e24-2cd3-4050-97f0-1482ee4cdb9c\n- Transmutation: holmes-investigate\n- Command: investigate\n- Status: completed\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\n\n

\n\n

🩺 Dr. WATSON full report for ecommerce (click to expand)

\n\n### 🩺 Dr. Watson's Independent Verification Report\n\n_Medical Examination of Evidence_\n\n- Examination Date: 2026-06-26T08:45:54.923Z\n- Patient SHA: b13e9ee2cab1eed967743547e674370837699a6e\n\n## 🔬 Citation Verification\n\n\"Let me examine each piece of evidence independently...\"\n\n- **Citations Examined**: 2\n- **Verified**: 0 ✅\n- **Failed**: 0 ❌\n- **Unable to Verify**: 2\n- **Exact Subrange Citations**: 0\n- **Whole-file Citations**: 0\n- **Coarse Citations**: 0\n- **Evidence Trust**: missing\n- **Trust Note**: No evidence citations were available for trust analysis.\n\n**Verification Rate**: 0.0%\n\n## 📊 Mathematical Verification\n\n\"I shall recalculate Holmes's arithmetic...\"\n\nHolmes claimed SCS: 95.0%\nWatson calculates: 100.0%\nDifference: ⚠️ Significant\n\n## 🔍 Consistency Analysis\n\n\"Checking for contradictions in Holmes's deductions...\"\n\n✅ No logical inconsistencies detected\n\n## 🩺 Dr. Watson's Medical Opinion\n\n**VERIFICATION: CONCERNS NOTED** ⚠️\n\n\"While Holmes's methods are generally sound, I have noted some\"\n\"discrepancies that warrant further investigation. No evidence citations were available for trust analysis.\"\n\nRespectfully submitted,\n- Dr. J. Watson, M.D.\n Medical Examiner & Verification Specialist\n\n## 🧵 Command Run\n\n- Run ID: run-b8505e7a-e0f1-45dc-8ce7-c1f365c698af\n- Transmutation: watson-verify\n- Command: verify\n- Status: completed\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\n\n

\n\n

🔮 Professor MORIARTY full report for ecommerce (click to expand)

\n\n### 🧠 Professor Moriarty's Temporal Predictions\n\n_The Mathematics of Inevitability_\n\n- Analysis Date: 2026-06-26T08:46:23.100Z\n\n**INSUFFICIENT DATA**\n\n> \"I require at least two data points to predict the future.\"\n> \"Run Wesley generate multiple times to build history.\"\n\n## 🧵 Command Run\n\n- Run ID: run-cd57008d-a2be-4fd1-be28-a41d32c1c400\n- Transmutation: moriarty-predict\n- Command: predict\n- Status: completed\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\n\n

\n\n---\n\n## Schema Set `reference`\n\n### Plain-English Readout\n\n- **Holmes (evidence investigation)**: Holmes says this change looks ready to ship.\n- **Watson (independent verification)**: Watson found verification concerns. Most important concern: No evidence citations were available for trust analysis.\n- **Moriarty (trend forecast)**: Moriarty does not have enough historical data yet to forecast readiness.\n\n## Suggested next actions\n\n1. Resolve Watson’s verification concerns before trusting the Holmes verdict as final.\n\n

🕵️ SHA-lock HOLMES full report for reference (click to expand)

\n\n### 🕵️ SHA-lock HOLMES Investigation\n\n- Generated: 2026-01-01T00:00:00.000Z\n- Commit SHA: b13e9ee2cab1eed967743547e674370837699a6e\n- Bundle Version: 2.0.0\n\n> ⚠️ Evidence valid only for commit `b13e9ee`\n\n## 🔍 Executive Deduction\n\n\"Watson, after careful examination of the evidence, I deduce...\"\n\n**Weighted Completion**: ██████████ 95.0%\n**Scores**: SCS 95.0% · TCI 90.0% · MRI 10.0%\n**Verification Status**: 2 claims verified\n**Citation Quality**: 2 exact · 0 whole-file · 0 coarse\n**Evidence Trust**: strong\n**Ship Verdict**: ELEMENTARY\n\n## 🧩 SCS Breakdown\n\n| Component | Score | Coverage |\n|-----------|-------|----------|\n| Sql | 100.0% | 1.00/1.00 |\n| Types | 100.0% | 1.00/1.00 |\n| Validation | 100.0% | 1.00/1.00 |\n| Tests | 100.0% | 1.00/1.00 |\n\n## 🧪 TCI Breakdown\n\n| Component | Score | Coverage | Note |\n|-----------|-------|----------|------|\n| Unit Constraints | 100.0% | 1/1 | N/A |\n| Unit Rls | 100.0% | 1/1 | N/A |\n| Integration Relations | 100.0% | 1/1 | N/A |\n| E2e Ops | 90.0% | 9/10 | N/A |\n\n## ⚠️ MRI Breakdown\n\n| Component | Risk Share | Points | Count |\n|-----------|------------|--------|-------|\n| Drops | 0.0% | 0 | 0 |\n| Renames Without Uid | 0.0% | 0 | 0 |\n| Add Not Null Without Default | 100.0% | 1 | 1 |\n| Non Concurrent Indexes | 0.0% | 0 | 0 |\n\n## 📊 The Weight of Evidence\n\n\"Observe, Watson, how not all features carry equal importance...\"\n\n| Element | Weight | Status | Evidence | Strength | Deduction |\n|---------|--------|--------|----------|----------|-----------|\n| schema | 5 | ✅ Exact SQL & tests | test/fixtures/examples/.wesley-cache/reference/shipme-fixture/tests.sql:1-1@b13e9ee | exact | Elementary! |\n\n## 🚪 Security & Performance Gates\n\n\"Elementary security measures, Watson...\"\n\n| Gate | Status | Evidence | Holmes's Ruling |\n|------|--------|----------|-----------------|\n| Migration Risk | ✅ | MRI: 10.0% | \"Trivial risk\" |\n| Test Coverage | ✅ | TCI: 90.0% | \"Excellent coverage\" |\n| Sensitive Fields | ✅ | 0 fields | \"All secured\" |\n| Evidence Quality | ✅ | 2 exact · 0 whole-file · 0 coarse | \"All 2 citations resolve to exact line spans.\" |\n\n## 📋 The Verdict\n\n✅ **ELEMENTARY** - Ship immediately!\n\"The evidence is conclusive. No mysteries remain.\"\n\nSigned and sealed,\n- S. Holmes, Consulting Detective\n\n[END OF INVESTIGATION FOR COMMIT b13e9ee]\n\n## 🧵 Command Run\n\n- Run ID: run-0c6a7e9d-075c-4a84-b536-f67e84f3c65f\n- Transmutation: holmes-investigate\n- Command: investigate\n- Status: completed\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\n\n

\n\n

🩺 Dr. WATSON full report for reference (click to expand)

\n\n### 🩺 Dr. Watson's Independent Verification Report\n\n_Medical Examination of Evidence_\n\n- Examination Date: 2026-06-26T08:45:49.878Z\n- Patient SHA: b13e9ee2cab1eed967743547e674370837699a6e\n\n## 🔬 Citation Verification\n\n\"Let me examine each piece of evidence independently...\"\n\n- **Citations Examined**: 2\n- **Verified**: 0 ✅\n- **Failed**: 0 ❌\n- **Unable to Verify**: 2\n- **Exact Subrange Citations**: 0\n- **Whole-file Citations**: 0\n- **Coarse Citations**: 0\n- **Evidence Trust**: missing\n- **Trust Note**: No evidence citations were available for trust analysis.\n\n**Verification Rate**: 0.0%\n\n## 📊 Mathematical Verification\n\n\"I shall recalculate Holmes's arithmetic...\"\n\nHolmes claimed SCS: 95.0%\nWatson calculates: 100.0%\nDifference: ⚠️ Significant\n\n## 🔍 Consistency Analysis\n\n\"Checking for contradictions in Holmes's deductions...\"\n\n✅ No logical inconsistencies detected\n\n## 🩺 Dr. Watson's Medical Opinion\n\n**VERIFICATION: CONCERNS NOTED** ⚠️\n\n\"While Holmes's methods are generally sound, I have noted some\"\n\"discrepancies that warrant further investigation. No evidence citations were available for trust analysis.\"\n\nRespectfully submitted,\n- Dr. J. Watson, M.D.\n Medical Examiner & Verification Specialist\n\n## 🧵 Command Run\n\n- Run ID: run-dcf25f73-3962-4dc0-8576-af9437a421bb\n- Transmutation: watson-verify\n- Command: verify\n- Status: completed\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\n\n

\n\n

🔮 Professor MORIARTY full report for reference (click to expand)

\n\n### 🧠 Professor Moriarty's Temporal Predictions\n\n_The Mathematics of Inevitability_\n\n- Analysis Date: 2026-06-26T08:46:30.660Z\n\n**INSUFFICIENT DATA**\n\n> \"I require at least two data points to predict the future.\"\n> \"Run Wesley generate multiple times to build history.\"\n\n## 🧵 Command Run\n\n- Run ID: run-a0743f25-8297-4af3-94a7-52a172a14b52\n- Transmutation: moriarty-predict\n- Command: predict\n- Status: completed\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\n\n

\n\n---\n\n

📚 Glossary (what the Holmes terms mean)

\n\n- **HOLMES**: Wesley’s main evidence investigation. It decides whether the cited proof is strong enough to justify shipping this commit.\n- **WATSON**: An independent verification pass. It checks Holmes’s citations and score math instead of trusting them blindly.\n- **MORIARTY**: A readiness forecast over time. It is advisory trend analysis, not the release gate itself.\n- **Schema coverage score (SCS)**: How much of the schema has direct supporting evidence across generated artifacts and cited proof.\n- **Test confidence index (TCI)**: How much test evidence exists for constraints, policies, relationships, and operations.\n- **Migration risk index (MRI)**: How risky the schema change is to roll out. Lower is better.\n- **Evidence trust**: Whether the report is backed by exact citations, whole-file citations, or coarse references. Weak trust means the claim may be directionally right but not specific enough to trust blindly.\n- **Citation quality**: A count of exact line-span citations versus whole-file or coarse references.\n- **ELEMENTARY**: Ready to ship based on the current evidence.\n- **REQUIRES INVESTIGATION**: More work or review is needed before shipping.\n- **YOU SHALL NOT PASS**: Do not ship this change in its current state.\n\n

\n\n---\n\n_Machine-readable reports are grouped by schema set in workflow artifacts._\n\n---\n\n*Filed at 221B Repository Street*\n\n\n### 🚢 SHIPME\n\n[SHIPME] PASS · HOLMES fixture · sha b13e9ee\n\n\n### 💡 Codex Review\n\nHere are some automated review suggestions for this pull request.\n\n**Reviewed commit:** `f1b3a5f7d5`\n \n\n

ℹ️ About Codex in GitHub

\n
\n\n[Your team has set up Codex to review pull requests in this repo](https://chatgpt.com/codex/cloud/settings/general). Reviews are triggered when you\n- Open a pull request for review\n- Mark a draft as ready\n- Comment \"@codex review\".\n\nIf Codex has suggestions, it will comment; otherwise it will react with 👍.\n\n\n\n\nCodex can also answer questions or update the PR. Try commenting \"@codex address that feedback\".\n \n

\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Fail on invalid manifests before falling back**\n\nWhen `wesley.config.json` exists but is malformed or fails validation, `wesley config inspect` exits non-zero just like the no-manifest case, so this `else` takes the legacy detector path and can let CI proceed while ignoring the bad manifest and schema-set matrix. Since this repo now commits a manifest, fall back only when no manifest is present and fail on parse/validation errors.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Isolate Moriarty cache per schema set**\n\nWith more than one schema set, each matrix leg passes a different `bundle-dir` into `holmes-setup`, but that action caches `${{ inputs.bundle-dir }}/history.json` under the shared key `moriarty-${{ github.sha }}` and restore prefixes that do not include `matrix.schema_set.id`. This lets the previous run's history for one schema be restored into another schema's bundle, so Moriarty forecasts can be computed from the wrong schema history; include the schema id in the cache key or avoid sharing the cache for matrix runs.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Honor silent PR comment mode**\n\nWhen a manifest sets `commentMode` to `silent`, this job still runs for every selected PR because the condition only checks the event and schema count, and the detect job never propagates the manifest's comment mode. That makes the newly documented `silent` mode ineffective and still creates or updates a HOLMES PR comment.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Resolve changed schemas against the manifest directory**\n\nFor supported non-root manifests such as `sub/wesley.config.json` or `.wesley/config.json`, schema commands resolve `schemaPaths` relative to the manifest path, but `changed-schemas` passes the raw manifest into selection. A repo-relative Git diff like `sub/schema.graphql` will not match a manifest-relative `schema.graphql`, and the emitted matrix path would also be wrong for the workflow; normalize schema paths and bundle dirs relative to `manifest_path` before selecting.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Reject parent-directory schema ids**\n\nThis validator allows ids made only of dots, including `.` and `..`, but multi-schema bundle isolation later builds paths as `bundleDir/`. A manifest with id `..` therefore validates and resolves to the parent of the configured bundle directory, so generation can write reports outside the intended schema cache instead of keeping bundles isolated.\n\nUseful? React with 👍 / 👎.\n**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Preserve dot bundle directories**\n\nWhen a manifest uses `bundleDir: \".\"` (or another value that normalizes to empty), this normalization makes multi-schema bundle paths render as absolute-looking roots like `/core` and single-schema paths as an empty string. That breaks the promised `bundleDir/` isolation and can make the workflow write or look for bundles outside the intended project cache; keep `.` as the current directory or reject it explicitly.\n\nUseful? React with 👍 / 👎.\n_🎯 Functional Correctness_ | _🟠 Major_ | _⚡ Quick win_\n\n**Fail invalid manifests instead of silently falling back.**\n\nIf `wesley config inspect --json` exits non-zero because `wesley.config.json` is malformed, Line 61 drops into the legacy branch and the workflow keeps going with heuristic schema discovery. That bypasses the manifest-driven gate this PR is introducing and can run HOLMES against the wrong schema set. Only \"manifest absent\" should fall back; parse/validation errors should stop the job.\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn @.github/workflows/wesley-holmes.yml around lines 61 - 77, The fallback in\nthe workflow step around the `wesley config inspect --json` check is too broad\nand currently treats malformed `wesley.config.json` the same as a missing\nmanifest. Update the conditional handling in this job so `wesley config inspect`\nparse/validation failures stop the workflow instead of entering the legacy\nschema-detection branch, and reserve the fallback only for the manifest-absent\ncase; keep the existing `changed-schemas` and `wesley-selected.json` path for\nvalid manifests.\n```\n\n

\n\n\n\n\n\n\n\n\n\n✅ Addressed in commits c1b6ea7 to a12c552\n_🗄️ Data Integrity & Integration_ | _🟠 Major_\n\n

🧩 Analysis chain

\n\n🏁 Script executed:\n\n```shell\ncat -n .github/workflows/wesley-holmes.yml | sed -n '269,274p'\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 450\n\n---\n\n🏁 Script executed:\n\n```shell\ncat -n .github/workflows/wesley-holmes.yml | sed -n '441,446p'\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 452\n\n---\n\n🏁 Script executed:\n\n```shell\nfind . -type f -name \"*.py\" -o -name \"*.ts\" -o -name \"*.js\" | xargs grep -l \"loadHolmesSuiteReportSets\" 2>/dev/null | head -5\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 157\n\n---\n\n🏁 Script executed:\n\n```shell\nfind . -type f \$ -name \"*.py\" -o -name \"*.ts\" -o -name \"*.js\" -o -name \"*.sh\" \$ -exec grep -l \"loadHolmesSuiteReportSets\\|reports-by-schema\" {} \\; 2>/dev/null\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 157\n\n---\n\n🏁 Script executed:\n\n```shell\nrg \"loadHolmesSuiteReportSets\" --type py --type ts --type js --type go --type rs\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 184\n\n---\n\n🏁 Script executed:\n\n```shell\nls -la reports-by-schema/ 2>/dev/null || echo \"Directory not found in current state\"\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 194\n\n---\n\n🏁 Script executed:\n\n```shell\nfind . -type d -name \"reports-by-schema\" 2>/dev/null\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 157\n\n---\n\n🏁 Script executed:\n\n```shell\nrg \"schema_set\" .github/workflows/wesley-holmes.yml -B 5 -A 2 | head -50\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 1834\n\n---\n\n🏁 Script executed:\n\n```shell\nrg \"reports-by-schema\" .github/workflows/wesley-holmes.yml -B 3 -A 3\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 1611\n\n---\n\n🏁 Script executed:\n\n```shell\ngrep -n \"loadHolmesSuiteReportSets\\|HolmesSuite\\|reports-dir\" --include=\"*.py\" --include=\"*.ts\" --include=\"*.js\" -r . 2>/dev/null | head -20\n```\n\nRepository: flyingrobots/wesley\n\nLength of output: 157\n\n---\n\n\n\n

\n\n**Upload each schema directory, not the shared `reports-by-schema` parent.**\n\nEach job creates `reports-by-schema/${{ matrix.schema_set.id }}` and copies reports there, then uploads the entire `reports-by-schema` directory. When downloaded, this places reports under `reports/reports-by-schema//...` instead of `reports//...`, breaking tools that expect schema IDs as immediate children of the reports root.\n\nThe same issue affects three locations in this workflow:\n- Lines 218-223 (holmes-report)\n- Lines 269-274 (watson-report)\n- Lines 441-446 (moriarty-report)\n\n

Suggested fix

\n\nChange the `path` in each `actions/upload-artifact` step from:\n```diff\n- path: reports-by-schema\n+ path: reports-by-schema/${{ matrix.schema_set.id }}\n```\n

\n\nUpdate all three upload steps to target the schema-specific subdirectory directly.\n\n\n\n

📝 Committable suggestion

\n\n\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn @.github/workflows/wesley-holmes.yml around lines 218 - 223, The artifact\nupload steps are saving the shared reports-by-schema parent directory instead of\neach schema’s own folder, which causes an extra path level on download. Update\nthe three actions/upload-artifact steps for holmes-report, watson-report, and\nmoriarty-report to use the schema-specific reports-by-schema/${{\nmatrix.schema_set.id }} path so the extracted artifacts place each schema ID\ndirectly under the reports root. Use the existing matrix.schema_set.id value and\nkeep the upload naming unchanged.\n```\n\n

\n\n\n\n\n\n\n\n\n_🎯 Functional Correctness_ | _🟠 Major_ | _🏗️ Heavy lift_\n\n**Rebase manifest-relative paths before `changed-schemas` selection.**\n\nLine 459 still has the manifest path available, but Line 461 feeds raw manifest values into `select_changed_schema_paths()`. That means a supported manifest like `.wesley/config.json` can resolve `schema lower` correctly via `resolve_manifest_relative_path()`, yet `config changed-schemas` will miss the same schema because Git-style changed paths are compared against unresolved entries like `../schemas/core/**`.\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@crates/wesley-cli/src/main.rs` around lines 457 - 466, The changed-schemas\nbranch in main is comparing raw manifest entries against Git changed paths, so\nmanifest-relative schemas can be missed. Use the existing manifest_path from\nload_manifest_from_options() to rebase or resolve schema paths before calling\nselect_changed_schema_paths(), reusing the same path resolution behavior as\nresolve_manifest_relative_path() so ConfigChangedSchemasReport is built from\nnormalized paths rather than unresolved manifest-relative values.\n```\n\n

\n\n\n\n\n\n\n\n\n_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\n\n**Reject multi-document YAML manifests instead of ignoring trailing documents.**\n\n`YamlLoader::load_from_str()` can return more than one document, but this path accepts `documents.first()` and drops the rest. A manifest with a valid first document and stale second document will silently validate against the wrong input.\n \n

Suggested fix

\n\n```diff\n Err(json_error) => {\n let documents = YamlLoader::load_from_str(source).map_err(|yaml_error| {\n ProjectManifestError::Parse(format!(\n \"not valid JSON ({json_error}); not valid YAML ({yaml_error})\"\n ))\n })?;\n+ if documents.len() != 1 {\n+ return Err(ProjectManifestError::Parse(\n+ \"Wesley manifests must contain exactly one YAML document\".to_owned(),\n+ ));\n+ }\n let Some(document) = documents.first() else {\n return Err(ProjectManifestError::Parse(\n \"YAML source contained no document\".to_owned(),\n ));\n };\n```\n

\n\n\n\n

📝 Committable suggestion

\n\n> ‼️ **IMPORTANT**\n> Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.\n\n```suggestion\nfn parse_manifest_value(source: &str) -> Result {\n match serde_json::from_str::(source) {\n Ok(value) => Ok(value),\n Err(json_error) => {\n let documents = YamlLoader::load_from_str(source).map_err(|yaml_error| {\n ProjectManifestError::Parse(format!(\n \"not valid JSON ({json_error}); not valid YAML ({yaml_error})\"\n ))\n })?;\n if documents.len() != 1 {\n return Err(ProjectManifestError::Parse(\n \"Wesley manifests must contain exactly one YAML document\".to_owned(),\n ));\n }\n let Some(document) = documents.first() else {\n return Err(ProjectManifestError::Parse(\n \"YAML source contained no document\".to_owned(),\n ));\n };\n yaml_to_json(document)\n }\n }\n}\n```\n\n

\n\n\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@crates/wesley-core/src/domain/project_manifest.rs` around lines 416 - 430,\nparse_manifest_value currently accepts the first YAML document from\nYamlLoader::load_from_str and silently ignores any trailing documents, so update\nthis fallback to reject multi-document YAML manifests explicitly. After loading,\ncheck the document count before using documents.first(), and return a\nProjectManifestError::Parse when more than one document is present; keep the\nexisting JSON/YAML error handling and yaml_to_json path otherwise.\n```\n\n

\n\n\n\n\n\n\n\n\n_🗄️ Data Integrity & Integration_ | _🟠 Major_ | _⚡ Quick win_\n\n**Preserve absolute and current-directory paths during normalization.**\n\nThis helper strips the leading slash from absolute paths and normalizes `\".\"`/`\"./\"` to an empty string. That turns values like `bundleDir: \"/tmp/wesley-cache\"` into `tmp/wesley-cache` and `bundleDir: \".\"` into an empty base, which then produces wrong bundle directories such as `/core` for multi-schema manifests.\n \n

Suggested fix

\n\n```diff\n fn normalize_path(path: &str) -> String {\n- path.trim()\n- .trim_start_matches(\"./\")\n- .replace('\\\\', \"/\")\n- .split('/')\n- .filter(|segment| !segment.is_empty() && *segment != \".\")\n- .collect::>()\n- .join(\"/\")\n+ let path = path.trim().replace('\\\\', \"/\");\n+ if matches!(path.as_str(), \".\" | \"./\") {\n+ return \".\".to_owned();\n+ }\n+\n+ let is_absolute = path.starts_with('/');\n+ let normalized = path\n+ .trim_start_matches(\"./\")\n+ .split('/')\n+ .filter(|segment| !segment.is_empty() && *segment != \".\")\n+ .collect::>()\n+ .join(\"/\");\n+\n+ if is_absolute && !normalized.is_empty() {\n+ format!(\"/{normalized}\")\n+ } else {\n+ normalized\n+ }\n }\n```\n

\n\n\n\n

📝 Committable suggestion

\n\n> ‼️ **IMPORTANT**\n> Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.\n\n```suggestion\nfn normalize_path(path: &str) -> String {\n let path = path.trim().replace('\\\\', \"/\");\n if matches!(path.as_str(), \".\" | \"./\") {\n return \".\".to_owned();\n }\n\n let is_absolute = path.starts_with('/');\n let normalized = path\n .trim_start_matches(\"./\")\n .split('/')\n .filter(|segment| !segment.is_empty() && *segment != \".\")\n .collect::>()\n .join(\"/\");\n\n if is_absolute && !normalized.is_empty() {\n format!(\"/{normalized}\")\n } else {\n normalized\n }\n}\n```\n\n

\n\n\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@crates/wesley-core/src/domain/project_manifest.rs` around lines 493 - 500,\nThe normalize_path helper is over-normalizing by stripping leading slashes and\ncollapsing \".\"/\"./\" into an empty path, which breaks absolute and\ncurrent-directory bundleDir values. Update normalize_path in project_manifest.rs\nto preserve absolute paths unchanged and keep \".\"/\"./\" as a valid\ncurrent-directory base while still normalizing separators and redundant internal\nsegments; make sure the logic in normalize_path and any callers that build\nbundle directories continue to work for multi-schema manifests.\n```\n\n

\n\n\n\n\n\n\n\n\n_🗄️ Data Integrity & Integration_ | _🟠 Major_ | _🏗️ Heavy lift_\n\n**Don't infer the schema list solely from downloaded artifacts.**\n\n`loadHolmesSuiteReportSets()` can only enumerate schema IDs that produced directories on disk. If one matrix leg fails before its report upload, that schema set disappears from `reportSets`, so the aggregate comment never names the failing schema even though the overall job status is failed. Please thread the selected IDs from `detect-schema-sets.outputs.schema_sets` into this CLI and synthesize placeholder sections for missing sets.\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@packages/wesley-holmes/src/pr-comment-cli.mjs` around lines 16 - 38, The CLI\ncurrently derives schema sets only from loadHolmesSuiteReportSets(), which\nmisses any selected schemas that failed before uploading artifacts. Update main\nand its call path to accept the selected IDs from\ndetect-schema-sets.outputs.schema_sets, then use those IDs to build the\naggregate comment so every expected schema appears. In particular, preserve the\nexisting buildHolmesMultiSchemaComment flow but synthesize placeholder sections\nfor schema IDs that are missing from reportSets, instead of inferring the list\nsolely from downloaded artifacts.\n```\n\n

\n\n\n\n\n\n\n\n\n_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\n\n**Assert `descriptorOnly` per fixture instead of by total count.**\n\nThis count can still stay at `3` if one descriptor drops the field and another file adds an extra match, so the guard can pass with a broken fixture. Check each `fixture-extension.json` individually.\n\n \n

Suggested change

\n\n```diff\n- run bash -lc \"grep -R '\\\"descriptorOnly\\\": true' test/fixtures/extensions/fixture-zoo | wc -l\"\n- assert_success\n- [ \"$output\" -eq 3 ]\n+ for fixture in \\\n+ test/fixtures/extensions/fixture-zoo/compiler-heavy/fixture-extension.json \\\n+ test/fixtures/extensions/fixture-zoo/evidence-heavy/fixture-extension.json \\\n+ test/fixtures/extensions/fixture-zoo/blade-heavy/fixture-extension.json\n+ do\n+ run rg -n '\"descriptorOnly\": true' \"$fixture\"\n+ assert_success\n+ done\n```\n

\n\n\n\n

📝 Committable suggestion

\n\n\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@test/domain-empty-boundary.bats` around lines 120 - 122, The current test in\nthe domain-empty-boundary Bats file only checks a total grep count for\ndescriptorOnly, which can still pass if one fixture loses the field and another\ngains an extra match. Update the test to inspect each fixture-extension.json\nindividually in fixture-zoo, using the existing test block around the\ngrep/assert_success logic, so each descriptor-only fixture is verified directly\ninstead of relying on an aggregate count.\n```\n\n

\n\n\n\n\n\n\n\n\n**Actionable comments posted: 7**\n\n

🧹 Nitpick comments (2)

\n\n
\n
docs/build-artifacts.md (1)
\n\n`5-13`: _📐 Maintainability & Code Quality_ | _🔵 Trivial_ | _💤 Low value_\n\n**Clarify whether external targets write to `out/` and `.wesley-cache/`.**\n\nThe updated descriptions suggest external targets produce artifacts in `.wesley-cache/` and `out/`. If targets declare their own `outputDir` in the project manifest, the `out/` description may overgeneralize. Consider tightening to \"Native emit commands or external targets that use the default output directory.\"\n\n
\n
🤖 Prompt for AI Agents
\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@docs/build-artifacts.md` around lines 5 - 13, The `build-artifacts.md` table\novergeneralizes `out/` and `.wesley-cache/` for external targets; update the\ndescriptions so they only claim artifacts are written there when the target uses\nthe default output location. Tighten the wording for the `out/` and\n`.wesley-cache/` rows to distinguish native emit commands from external targets\nwith custom `outputDir` settings, keeping the entries aligned with how the\nartifact locations are actually produced.\n```\n\n
\n\n\n\n
\n
\n
test/ci-workflows.bats (1)
\n\n`190-215`: _📐 Maintainability & Code Quality_ | _🔵 Trivial_ | _💤 Low value_\n\n**Verify exact occurrence counts in workflow file.**\n\nThe test asserts specific grep occurrence counts (4 for `schema_set` matrix, 6 for `reports-by-schema`). These counts are fragile if the workflow file structure changes. Consider whether these should be exact equality (`-eq`) or minimum thresholds (`-ge`) for maintainability, or add a comment explaining why these specific counts are expected.\n\n\n\n\n\n```shell\n#!/bin/bash\n# Verify the actual occurrence counts in the workflow file\ngrep -c 'schema_set: \\${{ fromJson(needs.detect-schema-sets.outputs.schema_sets) }}' .github/workflows/wesley-holmes.yml\ngrep -c 'reports-by-schema/\\${{ matrix.schema_set.id }}' .github/workflows/wesley-holmes.yml\ngrep -c 'steps.detect.outputs.selected_count' .github/workflows/wesley-holmes.yml\n```\n\n
\n
🤖 Prompt for AI Agents
\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@test/ci-workflows.bats` around lines 190 - 215, The workflow test in bats is\nasserting brittle exact grep counts for `schema_set` and `reports-by-schema` in\n`test/ci-workflows.bats`. Update the checks around `wesley-holmes.yml` to use\nmore maintainable thresholds where appropriate, or add a clear inline comment\nexplaining why the current exact counts in the `HOLMES workflow uses Wesley\nproject manifest for selective schema sets` test are intentionally fixed. Keep\nthe existing symbol references like `detect-schema-sets`, `schema_set`, and\n`steps.detect.outputs.selected_count` so the intent remains tied to the workflow\nstructure.\n```\n\n
\n\n\n\n
\n\n

\n\n

🤖 Prompt for all review comments with AI agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nInline comments:\nIn @.github/workflows/wesley-holmes.yml:\n- Around line 61-77: The fallback in the workflow step around the `wesley config\ninspect --json` check is too broad and currently treats malformed\n`wesley.config.json` the same as a missing manifest. Update the conditional\nhandling in this job so `wesley config inspect` parse/validation failures stop\nthe workflow instead of entering the legacy schema-detection branch, and reserve\nthe fallback only for the manifest-absent case; keep the existing\n`changed-schemas` and `wesley-selected.json` path for valid manifests.\n- Around line 218-223: The artifact upload steps are saving the shared\nreports-by-schema parent directory instead of each schema’s own folder, which\ncauses an extra path level on download. Update the three actions/upload-artifact\nsteps for holmes-report, watson-report, and moriarty-report to use the\nschema-specific reports-by-schema/${{ matrix.schema_set.id }} path so the\nextracted artifacts place each schema ID directly under the reports root. Use\nthe existing matrix.schema_set.id value and keep the upload naming unchanged.\n\nIn `@crates/wesley-cli/src/main.rs`:\n- Around line 457-466: The changed-schemas branch in main is comparing raw\nmanifest entries against Git changed paths, so manifest-relative schemas can be\nmissed. Use the existing manifest_path from load_manifest_from_options() to\nrebase or resolve schema paths before calling select_changed_schema_paths(),\nreusing the same path resolution behavior as resolve_manifest_relative_path() so\nConfigChangedSchemasReport is built from normalized paths rather than unresolved\nmanifest-relative values.\n\nIn `@crates/wesley-core/src/domain/project_manifest.rs`:\n- Around line 416-430: parse_manifest_value currently accepts the first YAML\ndocument from YamlLoader::load_from_str and silently ignores any trailing\ndocuments, so update this fallback to reject multi-document YAML manifests\nexplicitly. After loading, check the document count before using\ndocuments.first(), and return a ProjectManifestError::Parse when more than one\ndocument is present; keep the existing JSON/YAML error handling and yaml_to_json\npath otherwise.\n- Around line 493-500: The normalize_path helper is over-normalizing by\nstripping leading slashes and collapsing \".\"/\"./\" into an empty path, which\nbreaks absolute and current-directory bundleDir values. Update normalize_path in\nproject_manifest.rs to preserve absolute paths unchanged and keep \".\"/\"./\" as a\nvalid current-directory base while still normalizing separators and redundant\ninternal segments; make sure the logic in normalize_path and any callers that\nbuild bundle directories continue to work for multi-schema manifests.\n\nIn `@packages/wesley-holmes/src/pr-comment-cli.mjs`:\n- Around line 16-38: The CLI currently derives schema sets only from\nloadHolmesSuiteReportSets(), which misses any selected schemas that failed\nbefore uploading artifacts. Update main and its call path to accept the selected\nIDs from detect-schema-sets.outputs.schema_sets, then use those IDs to build the\naggregate comment so every expected schema appears. In particular, preserve the\nexisting buildHolmesMultiSchemaComment flow but synthesize placeholder sections\nfor schema IDs that are missing from reportSets, instead of inferring the list\nsolely from downloaded artifacts.\n\nIn `@test/domain-empty-boundary.bats`:\n- Around line 120-122: The current test in the domain-empty-boundary Bats file\nonly checks a total grep count for descriptorOnly, which can still pass if one\nfixture loses the field and another gains an extra match. Update the test to\ninspect each fixture-extension.json individually in fixture-zoo, using the\nexisting test block around the grep/assert_success logic, so each\ndescriptor-only fixture is verified directly instead of relying on an aggregate\ncount.\n\n---\n\nNitpick comments:\nIn `@docs/build-artifacts.md`:\n- Around line 5-13: The `build-artifacts.md` table overgeneralizes `out/` and\n`.wesley-cache/` for external targets; update the descriptions so they only\nclaim artifacts are written there when the target uses the default output\nlocation. Tighten the wording for the `out/` and `.wesley-cache/` rows to\ndistinguish native emit commands from external targets with custom `outputDir`\nsettings, keeping the entries aligned with how the artifact locations are\nactually produced.\n\nIn `@test/ci-workflows.bats`:\n- Around line 190-215: The workflow test in bats is asserting brittle exact grep\ncounts for `schema_set` and `reports-by-schema` in `test/ci-workflows.bats`.\nUpdate the checks around `wesley-holmes.yml` to use more maintainable thresholds\nwhere appropriate, or add a clear inline comment explaining why the current\nexact counts in the `HOLMES workflow uses Wesley project manifest for selective\nschema sets` test are intentionally fixed. Keep the existing symbol references\nlike `detect-schema-sets`, `schema_set`, and\n`steps.detect.outputs.selected_count` so the intent remains tied to the workflow\nstructure.\n```\n\n

\n\n

🪄 Autofix (Beta)

\n\nFix all unresolved CodeRabbit comments on this PR:\n\n- [ ] Push a commit to this branch (recommended)\n- [ ] Create a new PR with the fixes\n\n

\n\n---\n\n

ℹ️ Review info

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⚙️ Run configuration

\n\n**Configuration used**: Path: .coderabbit.yaml\n\n**Review profile**: CHILL\n\n**Plan**: Pro\n\n**Run ID**: `8bed5cd1-49f4-4ebe-b33f-061b0d6d1154`\n\n

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📥 Commits

\n\nReviewing files that changed from the base of the PR and between 4c54a20752d68a936d5aa3d897d7685bc5645f1e and f1b3a5f7d5b70186e131628863f06436c7fa584b.\n\n

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📒 Files selected for processing (33)

\n\n* `.github/workflows/wesley-holmes.yml`\n* `CHANGELOG.md`\n* `CONTRIBUTING.md`\n* `README.md`\n* `crates/wesley-cli/src/main.rs`\n* `crates/wesley-cli/tests/cli.rs`\n* `crates/wesley-core/src/domain/mod.rs`\n* `crates/wesley-core/src/domain/project_manifest.rs`\n* `crates/wesley-core/src/lib.rs`\n* `crates/wesley-core/tests/project_manifest.rs`\n* `docs/GUIDE.md`\n* `docs/README.md`\n* `docs/architecture/holmes-architecture.md`\n* `docs/architecture/holmes-integration.md`\n* `docs/build-artifacts.md`\n* `docs/guides/extending.md`\n* `docs/guides/generator-plugins.md`\n* `docs/guides/module-authoring.md`\n* `docs/guides/quick-start.md`\n* `docs/reference/cli.md`\n* `docs/reference/project-manifest.md`\n* `docs/truth-manifest.json`\n* `packages/wesley-holmes/src/cli.mjs`\n* `packages/wesley-holmes/src/pr-comment-cli.mjs`\n* `packages/wesley-holmes/src/pr-comment.mjs`\n* `packages/wesley-holmes/test/pr-comment.test.mjs`\n* `test/ci-workflows.bats`\n* `test/domain-empty-boundary.bats`\n* `test/fixtures/extensions/fixture-zoo/README.md`\n* `test/fixtures/extensions/fixture-zoo/blade-heavy/fixture-extension.json`\n* `test/fixtures/extensions/fixture-zoo/compiler-heavy/fixture-extension.json`\n* `test/fixtures/extensions/fixture-zoo/evidence-heavy/fixture-extension.json`\n* `wesley.config.json`\n\n

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\n\n\n## docs/topics Audit\n\nI re-ran the manual `docs/topics/` release gate after the PR was opened.\n\n| Scope | Result | Evidence |\n| --- | --- | --- |\n| Tracked `docs/topics/` files | 1/1 audited | `docs/topics/contributing/triage.md` |\n| Accuracy | Gate met after remediation | Updated stale current lane list to include `v0.4.0` and `v0.5.0`; verified open issues have exactly one `triage:*` or `vX.Y.Z` scheduling label. |\n| Coverage | Gate met after remediation | Added related-authority links from the topic page to label taxonomy, release policy, and release checklist. |\n| GitHub label hygiene | Clean after remediation | Removed stale `lane:v0.2.0` from #646 after rationale comment, then deleted the obsolete label. Verified no `lane:*` labels remain. |\n\nValidation:\n\n- `cargo xtask docs-check`\n- `BATS_LIB_PATH=test/vendor bats -t test/release-governance.bats`\n- `git diff --check`\n- GitHub label audit: no `lane:*` labels remain\n- Open issue scheduling audit: no open issue lacks or exceeds one scheduling-state label\n\nFollow-up commit: `c1b6ea7b docs(topics): refresh triage lane audit`.\n## docs/topics Coverage Correction\n\nCorrection to the earlier topic audit: auditing only the tracked `docs/topics/contributing/triage.md` file was not enough. The release gate also requires coverage of release-relevant contributor/operator workflows, and a directory containing only triage did not meet that bar.\n\nRemediation commit: `d95de82a docs(topics): add operator workflow coverage`\n\nAdded topic coverage:\n\n| Topic Page | Workflow Covered |\n| --- | --- |\n| `docs/topics/README.md` | Topic index and coverage rule |\n| `docs/topics/compiler-boundary.md` | Domain-free Wesley ownership and extension placement |\n| `docs/topics/project-manifests.md` | Manifest-driven schema sets, changed-schema selection, and target metadata |\n| `docs/topics/validation.md` | PR/release local validation command selection |\n| `docs/topics/holmes-ci.md` | Manifest-driven HOLMES CI and evidence artifacts |\n| `docs/topics/releases.md` | Tagged-main release flow and human release gates |\n| `docs/topics/contributing/triage.md` | Issue triage and version-lane scheduling |\n\nSignposts updated:\n\n- `docs/README.md` now links to `docs/topics/README.md`\n- `CONTRIBUTING.md` now links to the topic index\n- `docs/truth-manifest.json` now tracks the new current topic pages\n\nValidation:\n\n- `cargo xtask docs-check`\n- `BATS_LIB_PATH=test/vendor bats -t test/release-governance.bats`\n- `pnpm exec prettier --check CONTRIBUTING.md docs/README.md docs/truth-manifest.json docs/topics/README.md docs/topics/compiler-boundary.md docs/topics/project-manifests.md docs/topics/validation.md docs/topics/holmes-ci.md docs/topics/releases.md`\n- `git diff --check`\n- pre-push `cargo xtask preflight`\n\nWith this correction, `docs/topics/` now covers the release-relevant contributor/operator workflows for this PR instead of merely auditing the one existing triage page.",{},"created",1782463893.8831744,"Completing the task","event_type","info",{"_93":473,"_97":94,"_467":1379},{"_93":1030,"_1031":1032},{"_93":1007,"_1008":507,"_1009":1010,"_1011":1012,"_1013":-5},"pr","pr_title","pr_message","### Motivation\n\n- The HOLMES `comment-report` job ran a stray Moriarty history-fetch step after posting the PR comment which performed unnecessary repository fetches outside the Moriarty job boundary.\n\n### Description\n\n- Remove the post-comment history fetch block from `.github/workflows/wesley-holmes.yml` so the `comment-report` job ends after creating/updating the PR comment and Moriarty history fetch remains scoped to the Moriarty job.\n\n### Testing\n\n- Ran `git diff --check` which produced no issues and passed. \n- Attempted `BATS_LIB_PATH=test/vendor bats -t test/ci-workflows.bats` but it could not run because `bats` is not installed in the environment. \n- Ran `pnpm run preflight` which failed during `pnpm audit --prod=false --json` due to the npm audit endpoint returning `403 Forbidden`, so the full preflight could not complete locally.","output_diff",{"_93":1011,"_1014":530,"_129":130,"_1015":-5,"_327":1016,"_1017":1018,"_1019":590,"_1020":32,"_1021":1022,"_1023":1024,"_1025":1026},"pre_apply_patch","repo_id","preapply_patch_base_commit_sha","diff --git a/.github/workflows/wesley-holmes.yml b/.github/workflows/wesley-holmes.yml\nindex 3ea889c5b01579b2ca0f3da0840c3de1fd8ebc9a..b4a0642fc9db528642bcdc5b730b67b03a395c5d 100644\n--- a/.github/workflows/wesley-holmes.yml\n+++ b/.github/workflows/wesley-holmes.yml\n@@ -571,34 +571,25 @@ jobs:\n );\n if (legacyBotComment) {\n core.warning(`Detected a legacy HOLMES-like bot comment without marker at comment ${legacyBotComment.id}; leaving it untouched.`);\n }\n \n const botComment = comments.find(comment =>\n comment.user.login === 'github-actions[bot]' &&\n comment.body.includes(marker)\n );\n \n if (botComment) {\n await github.rest.issues.updateComment({\n owner: context.repo.owner,\n repo: context.repo.repo,\n comment_id: botComment.id,\n body\n });\n } else {\n await github.rest.issues.createComment({\n owner: context.repo.owner,\n repo: context.repo.repo,\n issue_number: context.issue.number,\n body\n });\n }\n- - name: '🔄 Ensure history for MORIARTY'\n- shell: bash\n- run: |\n- set -euo pipefail\n- # In case fetch-depth wasn't honored or repo is shallow, try to unshallow\n- if git rev-parse --is-shallow-repository >/dev/null 2>&1; then\n- git fetch --prune --unshallow --tags || true\n- fi\n- git fetch --prune origin '+refs/heads/*:refs/remotes/origin/*' || true\n","external_storage_diff",{"_1027":1028,"_1029":-5},"files_modified","lines_added","lines_removed",9,"commit_message","ci: remove stray holmes history fetch","additional_parent_commit_shas",[],"file_id","file_00000000261871f7b3839f4db9bc2add","ttl","partial_repo_snapshot","files",[1033],{"_163":1034,"_1035":-5,"_1036":1037,"_1038":-5},".github/workflows/wesley-holmes.yml","contents","line_range_contents",[1039],"missing_reason",{"_1040":590,"_1041":1042,"_467":1043,"_1044":59},"line_range_start","line_range_end",595,[1045,213,1046,1047,1048,1049,1050,213,1051,1052,1053,1054,1055,213,1056,1057,213,1058,1059,1060,1061,1062,1063,1064,1065,213,1066,1067,1068,1069,1070,213,1071,1072,1069,1073,213,1074,1075,1076,1077,213,1078,1079,1080,1081,1082,1083,1084,1085,1075,1086,213,1087,1088,1089,1090,1091,1092,1093,213,1094,1095,213,1096,1097,1098,1099,1100,1101,1102,1103,1104,1105,1106,1101,1107,1108,1109,1110,1111,1112,1113,1104,1114,1115,1116,1117,1118,1119,1120,1121,1122,1123,1124,1125,1126,1127,1128,1129,1130,1131,1132,1133,1134,1135,1119,1136,1137,1138,1139,1140,1141,1093,213,1142,1143,1144,1145,1146,1147,1148,1149,1150,1151,1152,213,1153,1154,1155,1069,1156,1157,1158,213,1159,1160,1061,1161,1162,1163,1164,1165,1166,213,1066,1067,213,1068,213,1069,1070,1071,1072,1069,1073,213,1167,1168,1069,1169,1170,1171,1172,1173,1174,213,1175,1075,1176,1177,1178,1114,1179,1093,213,1180,1075,1181,1182,213,1183,1155,1069,1184,1185,1186,1187,1188,1158,213,1189,1190,1061,1191,1162,1163,1164,1165,1166,213,1066,1067,213,1068,213,1069,1070,1071,1072,213,1167,1168,1069,1169,1170,1171,1172,1173,213,1192,1193,1194,1069,1195,1196,1197,1169,213,1198,1080,1075,1086,1199,1200,213,1201,1155,1069,1202,1203,1158,213,1204,1205,1061,1206,1162,1163,1164,1165,1166,213,1066,1067,213,1068,213,1069,1070,1071,1072,213,1167,1168,1069,1169,1170,1171,1172,1173,213,1207,1208,1194,1069,1209,1210,1197,1169,213,1198,1080,1075,1086,1199,1211,213,1201,1155,1069,1212,1203,1158,213,1213,1214,1061,1215,1162,1163,1164,1165,1166,213,1066,1067,213,1068,213,1069,1070,1071,1072,1069,1073,213,1167,1168,1069,1169,1170,1171,1172,1173,1174,213,1216,1080,1075,1086,1217,1218,1093,1219,213,1220,1221,1222,1081,1223,1224,1225,1069,1226,1227,1228,1229,1230,1231,1232,213,1233,1234,1235,1236,1237,1238,1239,1240,1241,1242,1243,1244,1245,1246,1247,1248,1249,1250,1251,1252,213,1253,1234,1235,1254,1237,1238,1239,1255,1241,1242,1243,1244,1256,1257,1247,1248,1249,1250,1251,1252,213,1258,1259,1235,1260,1237,1238,1261,1241,1242,1243,1262,1263,1264,1265,1266,1267,1247,1268,1249,1250,1269,1270,1252,213,1271,1272,1273,1274,1275,213,1276,1277,1278,1279,1280,1281,1282,1283,1284,1285,1286,1287,1288,213,1289,1290,1194,1069,1291,1292,1197,1169,1081,1293,1294,1295,1296,1297,1298,213,1198,1080,1075,1086,1199,1299,213,1201,1155,1069,1300,1203,1158,213,1301,1302,1061,1303,1304,1305,1306,1307,1308,213,1309,1310,1311,213,1066,1067,213,1068,213,1069,1070,1071,1072,1312,1313,1069,1314,1315,213,1316,1313,1069,1156,1317,213,1318,1075,1086,1319,1320,1321,1322,1323,1093,1324,1325,1326,1327,1328,1329,1330,1331,1332,1126,1333,1119,1334,1335,1336,1323,1093,213,1337,1155,1069,1338,1339,1158,213,1340,1081,1341,1075,1086,1342,1343,1344,1345,1346,1347,1348,1349,213,1350,1221,1069,1226,1227,1351,1352,213,1353,1354,1355,1356,1357,1358,213,1359,1360,1361,1362,1363,1364,1365,1252,213,1366,1367,1368,1363,213,1369,1370,1371,1372,1373,1374,1375,1376,1377,1371,1372,1378,1374,1375,1252],"contains_end_of_file","name: 🔍 Wesley + SHA-lock HOLMES CI","on:"," pull_request:"," types: [opened, synchronize, reopened]"," push:"," branches: [main]","env:"," HOLMES_BUNDLE_DIR: test/fixtures/examples/.wesley-cache"," HOLMES_SCHEMA: test/fixtures/examples/ecommerce.graphql"," HOLMES_OUT_DIR: out"," HOLMES_ARTIFACT: wesley-bundle","permissions:"," contents: read","jobs:"," detect-schema-sets:"," name: '🧭 Detect Schema Sets'"," runs-on: ubuntu-latest"," outputs:"," schema_sets: ${{ steps.detect.outputs.schema_sets }}"," selected_count: ${{ steps.detect.outputs.selected_count }}"," comment_mode: ${{ steps.detect.outputs.comment_mode }}"," steps:"," - name: Harden runner"," uses: step-security/harden-runner@9af89fc71515a100421586dfdb3dc9c984fbf411"," with:"," egress-policy: audit"," - name: '📦 Checkout Repository'"," uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd"," fetch-depth: 0"," - name: Verify Rust toolchain"," run: |"," rustc --version"," cargo --version"," - name: '🧭 Detect Schema Sets'"," id: detect"," shell: bash"," env:"," EVENT_NAME: ${{ github.event_name }}"," BASE_SHA: ${{ github.event.pull_request.base.sha }}"," BEFORE_SHA: ${{ github.event.before }}"," HEAD_SHA: ${{ github.sha }}"," set -euo pipefail"," changed_file=\"$RUNNER_TEMP/wesley-changed-files.txt\""," : > \"$changed_file\""," if [ \"$EVENT_NAME\" = \"pull_request\" ] && [ -n \"${BASE_SHA:-}\" ]; then"," git diff --name-only \"$BASE_SHA\" \"$HEAD_SHA\" > \"$changed_file\" || true"," elif [ -n \"${BEFORE_SHA:-}\" ] && [ \"$BEFORE_SHA\" != \"0000000000000000000000000000000000000000\" ]; then"," git diff --name-only \"$BEFORE_SHA\" \"$HEAD_SHA\" > \"$changed_file\" || true"," fi"," manifest_status=0"," cargo run --bin wesley -- config inspect --json > \"$RUNNER_TEMP/wesley-manifest.json\" 2> \"$RUNNER_TEMP/wesley-manifest.err\" || manifest_status=$?"," if [ \"$manifest_status\" -eq 0 ]; then"," cargo run --bin wesley -- config changed-schemas \\"," --changed-file \"$changed_file\" \\"," --json > \"$RUNNER_TEMP/wesley-selected.json\""," comment_mode=\"$(node <<'NODE'"," const fs = require('fs');"," const report = JSON.parse(fs.readFileSync(process.env.RUNNER_TEMP + '/wesley-manifest.json', 'utf8'));"," process.stdout.write(report.manifest.commentMode || 'update');"," NODE"," )\""," node <<'NODE' > \"$RUNNER_TEMP/wesley-schema-sets.json\""," const report = JSON.parse(fs.readFileSync(process.env.RUNNER_TEMP + '/wesley-selected.json', 'utf8'));"," const sets = (report.selectedSchemaPaths || []).map((schema) => ({"," id: schema.id,"," schema: schema.path,"," bundle_dir: schema.bundleDir"," }));"," process.stdout.write(JSON.stringify(sets));"," else"," if ! grep -Fq \"no Wesley manifest found\" \"$RUNNER_TEMP/wesley-manifest.err\"; then"," echo \"Wesley manifest discovery failed; refusing legacy fallback\" >&2"," cat \"$RUNNER_TEMP/wesley-manifest.err\" >&2 || true"," exit \"$manifest_status\""," fi"," echo \"No Wesley manifest found; falling back to legacy schema detection\" >&2"," cat \"$RUNNER_TEMP/wesley-manifest.err\" >&2 || true"," if [ -n \"${WESLEY_SCHEMA:-}\" ] && [ -f \"$WESLEY_SCHEMA\" ]; then"," schema=\"$WESLEY_SCHEMA\""," elif [ -n \"${HOLMES_SCHEMA:-}\" ] && [ -f \"$HOLMES_SCHEMA\" ]; then"," schema=\"$HOLMES_SCHEMA\""," else"," mapfile -t files < <(git ls-files \"**/*.graphql\" 2>/dev/null || true)"," picked=\"\""," if [ ${#files[@]} -gt 0 ]; then"," for f in \"${files[@]}\"; do"," if [ \"${f##*/}\" = \"schema.graphql\" ]; then picked=\"$f\"; break; fi"," done"," if [ -z \"$picked\" ]; then picked=\"${files[0]}\"; fi"," fi"," schema=\"${picked:-$HOLMES_SCHEMA}\""," base_dir=\"$(dirname \"$schema\")\""," bundle_dir=\"$base_dir/.wesley-cache\""," comment_mode=\"update\""," SCHEMA=\"$schema\" BUNDLE_DIR=\"$bundle_dir\" \\"," node -e 'process.stdout.write(JSON.stringify([{id:\"default\",schema:process.env.SCHEMA,bundle_dir:process.env.BUNDLE_DIR}]))' \\"," > \"$RUNNER_TEMP/wesley-schema-sets.json\""," selected_count=\"$(jq 'length' \"$RUNNER_TEMP/wesley-schema-sets.json\")\""," echo \"Selected schema sets: $selected_count\""," jq -r '.[] | \" - \\(.id): \\(.schema) -> \\(.bundle_dir)\"' \"$RUNNER_TEMP/wesley-schema-sets.json\""," {"," echo 'schema_sets<> \"$GITHUB_OUTPUT\""," - name: '📤 Upload Dashboard Template'"," if: ${{ steps.detect.outputs.selected_count != '0' }}"," uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a"," name: dashboard-template"," path: docs/holmes-dashboard"," if-no-files-found: error"," wesley-generate:"," name: '🚀 Wesley Generation'"," needs: detect-schema-sets"," if: ${{ needs.detect-schema-sets.outputs.selected_count != '0' }}"," strategy:"," fail-fast: false"," matrix:"," schema_set: ${{ fromJson(needs.detect-schema-sets.outputs.schema_sets) }}"," - name: '🛠️ Setup HOLMES environment'"," uses: ./.github/actions/holmes-setup"," bundle-dir: ${{ matrix.schema_set.bundle_dir }}"," schema: ${{ matrix.schema_set.schema }}"," out-dir: ${{ env.HOLMES_OUT_DIR }}"," artifact-name: ${{ env.HOLMES_ARTIFACT }}-${{ matrix.schema_set.id }}"," cache-namespace: ${{ matrix.schema_set.id }}"," always-generate: 'true'"," - name: '📊 Display Scores'"," echo \"## 📊 Generation Scores\""," if [ -f \"${{ matrix.schema_set.bundle_dir }}/scores.json\" ]; then"," cat \"${{ matrix.schema_set.bundle_dir }}/scores.json\" | jq '.scores'"," echo \"No scores.json found yet\""," - name: '📦 Prepare Bundle for Upload'"," ls -la \"${{ matrix.schema_set.bundle_dir }}\""," test -f \"${{ matrix.schema_set.bundle_dir }}/bundle.json\""," - name: '💾 Upload Bundle'"," name: ${{ env.HOLMES_ARTIFACT }}-${{ matrix.schema_set.id }}"," path: |"," ${{ matrix.schema_set.bundle_dir }}/bundle.json"," ${{ matrix.schema_set.bundle_dir }}/scores.json"," ${{ matrix.schema_set.bundle_dir }}/history.json"," holmes-investigate:"," name: '🔍 HOLMES Investigation'"," needs: [detect-schema-sets, wesley-generate]"," - name: '🔍 Run Investigation'"," id: holmes"," uses: ./.github/actions/run-holmes-command"," command: investigate"," report-name: holmes"," schema-path: ${{ matrix.schema_set.schema }}"," - name: '📚 Scope Report'"," mkdir -p \"reports-by-schema/${{ matrix.schema_set.id }}\""," cp -R reports/holmes \"reports-by-schema/${{ matrix.schema_set.id }}/\""," - name: '💾 Save Report'"," name: holmes-report-${{ matrix.schema_set.id }}"," path: reports-by-schema"," watson-verify:"," name: '🩺 WATSON Verification'"," needs: [detect-schema-sets, wesley-generate, holmes-investigate]"," - name: '🩺 Run Verification'"," id: watson"," command: verify"," report-name: watson"," cp -R reports/watson \"reports-by-schema/${{ matrix.schema_set.id }}/\""," name: watson-report-${{ matrix.schema_set.id }}"," moriarty-predict:"," name: '🔮 MORIARTY Predictions'"," needs: [detect-schema-sets, wesley-generate, watson-verify]"," - name: '🔄 Ensure history for MORIARTY'"," if git rev-parse --is-shallow-repository >/dev/null 2>&1; then"," git fetch --prune --unshallow --tags || true"," git fetch --prune origin '+refs/heads/*:refs/remotes/origin/*' || true"," - name: '🧮 Compute MORIARTY context (issues/PRs/CI)'"," uses: actions/github-script@3a2844b7e9c422d3c10d287c895573f7108da1b3"," continue-on-error: true"," BUNDLE_DIR: ${{ matrix.schema_set.bundle_dir }}"," BASE_REF: ${{ github.base_ref }}"," TIMEFRAME_HOURS: 168"," script: |"," const fs = require('fs');"," const path = require('path');"," const baseRef = process.env.BASE_REF || 'main';"," const hours = Number(process.env.TIMEFRAME_HOURS || '168');"," const since = new Date(Date.now() - hours*3600*1000);"," const sinceIso = since.toISOString();"," async function countClosedIssuesSince() {"," let page = 1, per_page = 100, count = 0;"," while (page <= 3) {"," const { data } = await github.rest.issues.listForRepo({"," owner: context.repo.owner,"," repo: context.repo.repo,"," state: 'closed',"," since: sinceIso,"," per_page,"," page"," });"," if (!data || data.length === 0) break;"," for (const item of data) {"," if (!item.pull_request && item.closed_at && new Date(item.closed_at) >= since) count++;"," }"," if (data.length < per_page) break;"," page++;"," }"," return count;"," }"," async function countMergedPRsSince() {"," const { data } = await github.rest.pulls.list({"," base: baseRef,"," for (const pr of data) {"," if (pr.merged_at && new Date(pr.merged_at) >= since) count++;"," async function computeCIStability() {"," let page = 1, per_page = 100, runs = 0, success = 0;"," const { data } = await github.rest.actions.listWorkflowRunsForRepo({"," branch: baseRef,"," if (!data || !data.workflow_runs || data.workflow_runs.length === 0) break;"," for (const run of data.workflow_runs) {"," const created = new Date(run.created_at);"," if (created < since) continue;"," runs++;"," if (run.conclusion === 'success') success++;"," if (data.workflow_runs.length < per_page) break;"," const stability = runs > 0 ? success / runs : null;"," return { branch: baseRef, runsConsidered: runs, successes: success, stability, since: sinceIso };"," const [issuesClosed, prsMerged, ci] = await Promise.all(["," countClosedIssuesSince(),"," countMergedPRsSince(),"," computeCIStability()"," ]);"," const out = {"," generatedAt: new Date().toISOString(),"," timeframeHours: hours,"," baseRef,"," issuesClosed,"," prsMerged,"," ci"," };"," const outDir = process.env.BUNDLE_DIR || '.wesley';"," fs.mkdirSync(outDir, { recursive: true });"," const outPath = path.join(outDir, 'moriarty-context.json');"," fs.writeFileSync(outPath, JSON.stringify(out, null, 2));"," core.info(`Wrote ${outPath}`);"," - name: '🔮 Run Predictions'"," id: moriarty"," command: predict"," report-name: moriarty"," MORIARTY_BASE_REF: '${{ github.base_ref }}'"," MORIARTY_USE_GIT: '1'"," MORIARTY_GIT_WINDOW_HOURS: '24'"," MORIARTY_ACTIVITY_THRESHOLD: '0.35'"," MORIARTY_ACTIVITY_COMMITS_PER_DAY: '6'"," MORIARTY_ACTIVITY_RELEVANT_PER_DAY: '4'"," cp -R reports/moriarty \"reports-by-schema/${{ matrix.schema_set.id }}/\""," name: moriarty-report-${{ matrix.schema_set.id }}"," comment-report:"," name: '📝 Post Investigation Report'"," if: github.event_name == 'pull_request' && needs.detect-schema-sets.outputs.selected_count != '0' && needs.detect-schema-sets.outputs.comment_mode != 'silent'"," needs: [detect-schema-sets, holmes-investigate, watson-verify, moriarty-predict]"," env:"," HOLMES_STATUS: ${{ needs.holmes-investigate.result }}"," WATSON_STATUS: ${{ needs.watson-verify.result }}"," MORIARTY_STATUS: ${{ needs.moriarty-predict.result }}"," permissions:"," issues: write"," pull-requests: write"," - name: '📥 Download Reports'"," uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c"," merge-multiple: true"," path: reports"," - name: '📥 Download Dashboard Template'"," path: dashboard-template"," - name: '📊 Assemble Dashboard'"," mkdir -p dashboard"," template_path=$(find dashboard-template -name \"index.html\" -print -quit)"," if [ -z \"$template_path\" ]; then"," echo \"Dashboard template index.html not found\" >&2"," exit 1"," template_dir=$(dirname \"$template_path\")"," cp -R \"$template_dir\"/. dashboard/"," mkdir -p reports"," missing=0"," for report in holmes watson moriarty; do"," src=$(find reports -name \"$report-report.json\" -print -quit)"," if [ -z \"$src\" ]; then"," echo \"Missing $report-report.json\" >&2"," missing=1"," cp \"$src\" \"dashboard/$report-report.json\""," done"," if [ $missing -ne 0 ]; then"," echo \"Dashboard assembly failed due to missing report JSON\" >&2"," - name: '📤 Upload Dashboard'"," name: holmes-dashboard"," path: dashboard"," - name: '🧾 Build PR Comment'"," PR_NUMBER: ${{ github.event.pull_request.number }}"," node packages/wesley-holmes/src/pr-comment-cli.mjs \\"," --reports-dir reports \\"," --pr-number \"$PR_NUMBER\" \\"," --head-sha \"$GITHUB_SHA\" \\"," --holmes-status \"$HOLMES_STATUS\" \\"," --watson-status \"$WATSON_STATUS\" \\"," --moriarty-status \"$MORIARTY_STATUS\" \\"," > reports/pr-comment.md"," - name: '📝 Create Comment'"," const marker = '';"," const body = fs.readFileSync('reports/pr-comment.md', 'utf8');"," const comments = await github.paginate(github.rest.issues.listComments, {"," owner: context.repo.owner,"," repo: context.repo.repo,"," issue_number: context.issue.number,"," per_page: 100,"," });"," const legacyBotComment = comments.find(comment =>"," comment.user.type === 'Bot' &&"," !comment.body.includes(marker) &&"," comment.body.includes('The Case of Pull Request')"," );"," if (legacyBotComment) {"," core.warning(`Detected a legacy HOLMES-like bot comment without marker at comment ${legacyBotComment.id}; leaving it untouched.`);"," const botComment = comments.find(comment =>"," comment.user.login === 'github-actions[bot]' &&"," comment.body.includes(marker)"," if (botComment) {"," await github.rest.issues.updateComment({"," owner: context.repo.owner,"," repo: context.repo.repo,"," comment_id: botComment.id,"," body"," });"," } else {"," await github.rest.issues.createComment({"," issue_number: context.issue.number,",[1380,1381,1382],{"_994":46,"_46":1386},{"_994":1384,"_163":1034,"_1040":1385,"_1041":1042},{"_994":46,"_46":1383},"\n* Committed the change with `eaf37e4` (`ci: remove stray holmes history fetch`) and created the requested PR metadata.\n\n**Testing**\n* ✅ `git diff --check`\n* ⚠️ `BATS_LIB_PATH=test/vendor bats -t test/ci-workflows.bats` (blocked because `bats` is not installed in this environment)\n* ⚠️ `pnpm run preflight` (blocked during `pnpm audit --prod=false --json` because the npm audit endpoint returned `403 Forbidden`)","repo_file_citation",584,"**Summary**\n* Removed the stray post-comment Moriarty history-fetch step from the HOLMES workflow so the `comment-report` job ends after creating or updating the PR comment. ",{"_93":328,"_42":85,"_97":328,"_1389":1390,"_1391":1392,"_1393":1394,"_133":-5,"_120":1395},[84],"input_items",[1412,1413,1414,1415,1416,1417,1418,1419,1420,1421,1422,1423,1424,1425,1426,1427,1428,1429,1430,1431,1432,1433],"external_post_config",{"_1396":1397,"_266":200,"_1398":308,"_277":-5,"_1014":260,"_1399":-5,"_1400":1401,"_1402":1403,"_1404":-5,"_1405":-5,"_1406":1407,"_1408":15,"_1409":59,"_1410":54,"_1411":15},"user_model_slug","slug",1782463668.085618,"installation_id",89912914,"pr_number","review_trigger","comment_id",4807998095,"comment_type","issue","pr_write_guard_token","pending_pr_reaction_id","pending_comment_reaction_id",375081789,"comment_if_no_findings","comment_on_error","share_url","is_parallel_review",{"_93":473,"_97":328,"_467":1475},{"_315":316,"_317":318,"_1472":322,"_1473":130,"_324":-5,"_93":1474},{"_93":1434,"_317":1471,"_163":-5,"_1436":-5,"_1437":-5},{"_93":1434,"_317":1470,"_163":-5,"_1436":-5,"_1437":-5},{"_93":1434,"_317":1469,"_163":-5,"_1436":-5,"_1437":-5},{"_93":1434,"_317":1468,"_163":-5,"_1436":-5,"_1437":-5},{"_93":1434,"_317":1467,"_163":1034,"_1436":1442,"_1437":-5},{"_93":1434,"_317":1465,"_163":1034,"_1436":1442,"_1437":1466},{"_93":1434,"_317":1464,"_163":1034,"_1436":1442,"_1437":-5},{"_93":1434,"_317":1462,"_163":1453,"_1436":1442,"_1437":1463},{"_93":1434,"_317":1460,"_163":1448,"_1436":1442,"_1437":1461},{"_93":1434,"_317":1458,"_163":1448,"_1436":1442,"_1437":1459},{"_93":1434,"_317":1457,"_163":1034,"_1436":1442,"_1437":-5},{"_93":1434,"_317":1455,"_163":1034,"_1436":1442,"_1437":1456},{"_93":1434,"_317":1452,"_163":1453,"_1436":1442,"_1437":1454},{"_93":1434,"_317":1450,"_163":1448,"_1436":1442,"_1437":1451},{"_93":1434,"_317":1447,"_163":1448,"_1436":1442,"_1437":1449},{"_93":1434,"_317":1444,"_163":1445,"_1436":1442,"_1437":1446},{"_93":1434,"_317":1440,"_163":1441,"_1436":1442,"_1437":1443},{"_93":1434,"_317":1439,"_163":-5,"_1436":-5,"_1437":-5},{"_93":1434,"_317":1438,"_163":-5,"_1436":-5,"_1437":-5},{"_93":1434,"_317":1435,"_163":-5,"_1436":-5,"_1437":-5},"pull_request_comment","## docs/topics Coverage Correction\n\nCorrection to the earlier topic audit: auditing only the tracked `docs/topics/contributing/triage.md` file was not enough. The release gate also requires coverage of release-relevant contributor/operator workflows, and a directory containing only triage did not meet that bar.\n\nRemediation commit: `d95de82a docs(topics): add operator workflow coverage`\n\nAdded topic coverage:\n\n| Topic Page | Workflow Covered |\n| --- | --- |\n| `docs/topics/README.md` | Topic index and coverage rule |\n| `docs/topics/compiler-boundary.md` | Domain-free Wesley ownership and extension placement |\n| `docs/topics/project-manifests.md` | Manifest-driven schema sets, changed-schema selection, and target metadata |\n| `docs/topics/validation.md` | PR/release local validation command selection |\n| `docs/topics/holmes-ci.md` | Manifest-driven HOLMES CI and evidence artifacts |\n| `docs/topics/releases.md` | Tagged-main release flow and human release gates |\n| `docs/topics/contributing/triage.md` | Issue triage and version-lane scheduling |\n\nSignposts updated:\n\n- `docs/README.md` now links to `docs/topics/README.md`\n- `CONTRIBUTING.md` now links to the topic index\n- `docs/truth-manifest.json` now tracks the new current topic pages\n\nValidation:\n\n- `cargo xtask docs-check`\n- `BATS_LIB_PATH=test/vendor bats -t test/release-governance.bats`\n- `pnpm exec prettier --check CONTRIBUTING.md docs/README.md docs/truth-manifest.json docs/topics/README.md docs/topics/compiler-boundary.md docs/topics/project-manifests.md docs/topics/validation.md docs/topics/holmes-ci.md docs/topics/releases.md`\n- `git diff --check`\n- pre-push `cargo xtask preflight`\n\nWith this correction, `docs/topics/` now covers the release-relevant contributor/operator workflows for this PR instead of merely auditing the one existing triage page.","side","line","## docs/topics Audit\n\nI re-ran the manual `docs/topics/` release gate after the PR was opened.\n\n| Scope | Result | Evidence |\n| --- | --- | --- |\n| Tracked `docs/topics/` files | 1/1 audited | `docs/topics/contributing/triage.md` |\n| Accuracy | Gate met after remediation | Updated stale current lane list to include `v0.4.0` and `v0.5.0`; verified open issues have exactly one `triage:*` or `vX.Y.Z` scheduling label. |\n| Coverage | Gate met after remediation | Added related-authority links from the topic page to label taxonomy, release policy, and release checklist. |\n| GitHub label hygiene | Clean after remediation | Removed stale `lane:v0.2.0` from #646 after rationale comment, then deleted the obsolete label. Verified no `lane:*` labels remain. |\n\nValidation:\n\n- `cargo xtask docs-check`\n- `BATS_LIB_PATH=test/vendor bats -t test/release-governance.bats`\n- `git diff --check`\n- GitHub label audit: no `lane:*` labels remain\n- Open issue scheduling audit: no open issue lacks or exceeds one scheduling-state label\n\nFollow-up commit: `c1b6ea7b docs(topics): refresh triage lane audit`.","**Actionable comments posted: 7**\n\n

🧹 Nitpick comments (2)

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docs/build-artifacts.md (1)
\n\n`5-13`: _📐 Maintainability & Code Quality_ | _🔵 Trivial_ | _💤 Low value_\n\n**Clarify whether external targets write to `out/` and `.wesley-cache/`.**\n\nThe updated descriptions suggest external targets produce artifacts in `.wesley-cache/` and `out/`. If targets declare their own `outputDir` in the project manifest, the `out/` description may overgeneralize. Consider tightening to \"Native emit commands or external targets that use the default output directory.\"\n\n
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🤖 Prompt for AI Agents
\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@docs/build-artifacts.md` around lines 5 - 13, The `build-artifacts.md` table\novergeneralizes `out/` and `.wesley-cache/` for external targets; update the\ndescriptions so they only claim artifacts are written there when the target uses\nthe default output location. Tighten the wording for the `out/` and\n`.wesley-cache/` rows to distinguish native emit commands from external targets\nwith custom `outputDir` settings, keeping the entries aligned with how the\nartifact locations are actually produced.\n```\n\n
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test/ci-workflows.bats (1)
\n\n`190-215`: _📐 Maintainability & Code Quality_ | _🔵 Trivial_ | _💤 Low value_\n\n**Verify exact occurrence counts in workflow file.**\n\nThe test asserts specific grep occurrence counts (4 for `schema_set` matrix, 6 for `reports-by-schema`). These counts are fragile if the workflow file structure changes. Consider whether these should be exact equality (`-eq`) or minimum thresholds (`-ge`) for maintainability, or add a comment explaining why these specific counts are expected.\n\n\n\n\n\n```shell\n#!/bin/bash\n# Verify the actual occurrence counts in the workflow file\ngrep -c 'schema_set: \\${{ fromJson(needs.detect-schema-sets.outputs.schema_sets) }}' .github/workflows/wesley-holmes.yml\ngrep -c 'reports-by-schema/\\${{ matrix.schema_set.id }}' .github/workflows/wesley-holmes.yml\ngrep -c 'steps.detect.outputs.selected_count' .github/workflows/wesley-holmes.yml\n```\n\n
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🤖 Prompt for AI Agents
\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@test/ci-workflows.bats` around lines 190 - 215, The workflow test in bats is\nasserting brittle exact grep counts for `schema_set` and `reports-by-schema` in\n`test/ci-workflows.bats`. Update the checks around `wesley-holmes.yml` to use\nmore maintainable thresholds where appropriate, or add a clear inline comment\nexplaining why the current exact counts in the `HOLMES workflow uses Wesley\nproject manifest for selective schema sets` test are intentionally fixed. Keep\nthe existing symbol references like `detect-schema-sets`, `schema_set`, and\n`steps.detect.outputs.selected_count` so the intent remains tied to the workflow\nstructure.\n```\n\n
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🤖 Prompt for all review comments with AI agents

\n\n

🪄 Autofix (Beta)

\n\nFix all unresolved CodeRabbit comments on this PR:\n\n- [ ] Push a commit to this branch (recommended)\n- [ ] Create a new PR with the fixes\n\n

\n\n---\n\n

ℹ️ Review info

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⚙️ Run configuration

\n\n**Configuration used**: Path: .coderabbit.yaml\n\n**Review profile**: CHILL\n\n**Plan**: Pro\n\n**Run ID**: `8bed5cd1-49f4-4ebe-b33f-061b0d6d1154`\n\n

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📥 Commits

\n\nReviewing files that changed from the base of the PR and between 4c54a20752d68a936d5aa3d897d7685bc5645f1e and f1b3a5f7d5b70186e131628863f06436c7fa584b.\n\n

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📒 Files selected for processing (33)

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\n\n","_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\n\n**Assert `descriptorOnly` per fixture instead of by total count.**\n\nThis count can still stay at `3` if one descriptor drops the field and another file adds an extra match, so the guard can pass with a broken fixture. Check each `fixture-extension.json` individually.\n\n \n

Suggested change

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📝 Committable suggestion

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🤖 Prompt for AI Agents

\n\n\n\n\n\n\n\n","test/domain-empty-boundary.bats","RIGHT",122,"_🗄️ Data Integrity & Integration_ | _🟠 Major_ | _🏗️ Heavy lift_\n\n**Don't infer the schema list solely from downloaded artifacts.**\n\n`loadHolmesSuiteReportSets()` can only enumerate schema IDs that produced directories on disk. If one matrix leg fails before its report upload, that schema set disappears from `reportSets`, so the aggregate comment never names the failing schema even though the overall job status is failed. Please thread the selected IDs from `detect-schema-sets.outputs.schema_sets` into this CLI and synthesize placeholder sections for missing sets.\n\n

🤖 Prompt for AI Agents

\n\n\n\n\n\n\n\n","packages/wesley-holmes/src/pr-comment-cli.mjs",38,"_🗄️ Data Integrity & Integration_ | _🟠 Major_ | _⚡ Quick win_\n\n**Preserve absolute and current-directory paths during normalization.**\n\nThis helper strips the leading slash from absolute paths and normalizes `\".\"`/`\"./\"` to an empty string. That turns values like `bundleDir: \"/tmp/wesley-cache\"` into `tmp/wesley-cache` and `bundleDir: \".\"` into an empty base, which then produces wrong bundle directories such as `/core` for multi-schema manifests.\n \n

Suggested fix

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📝 Committable suggestion

\n\n> ‼️ **IMPORTANT**\n> Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.\n\n```suggestion\nfn normalize_path(path: &str) -> String {\n let path = path.trim().replace('\\\\', \"/\");\n if matches!(path.as_str(), \".\" | \"./\") {\n return \".\".to_owned();\n }\n\n let is_absolute = path.starts_with('/');\n let normalized = path\n .trim_start_matches(\"./\")\n .split('/')\n .filter(|segment| !segment.is_empty() && *segment != \".\")\n .collect::>()\n .join(\"/\");\n\n if is_absolute && !normalized.is_empty() {\n format!(\"/{normalized}\")\n } else {\n normalized\n }\n}\n```\n\n

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🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@crates/wesley-core/src/domain/project_manifest.rs` around lines 493 - 500,\nThe normalize_path helper is over-normalizing by stripping leading slashes and\ncollapsing \".\"/\"./\" into an empty path, which breaks absolute and\ncurrent-directory bundleDir values. Update normalize_path in project_manifest.rs\nto preserve absolute paths unchanged and keep \".\"/\"./\" as a valid\ncurrent-directory base while still normalizing separators and redundant internal\nsegments; make sure the logic in normalize_path and any callers that build\nbundle directories continue to work for multi-schema manifests.\n```\n\n

\n\n\n\n\n\n\n\n","crates/wesley-core/src/domain/project_manifest.rs",500,"_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\n\n**Reject multi-document YAML manifests instead of ignoring trailing documents.**\n\n`YamlLoader::load_from_str()` can return more than one document, but this path accepts `documents.first()` and drops the rest. A manifest with a valid first document and stale second document will silently validate against the wrong input.\n \n

Suggested fix

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📝 Committable suggestion

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🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@crates/wesley-core/src/domain/project_manifest.rs` around lines 416 - 430,\nparse_manifest_value currently accepts the first YAML document from\nYamlLoader::load_from_str and silently ignores any trailing documents, so update\nthis fallback to reject multi-document YAML manifests explicitly. After loading,\ncheck the document count before using documents.first(), and return a\nProjectManifestError::Parse when more than one document is present; keep the\nexisting JSON/YAML error handling and yaml_to_json path otherwise.\n```\n\n

\n\n\n\n\n\n\n\n",430,"_🎯 Functional Correctness_ | _🟠 Major_ | _🏗️ Heavy lift_\n\n**Rebase manifest-relative paths before `changed-schemas` selection.**\n\nLine 459 still has the manifest path available, but Line 461 feeds raw manifest values into `select_changed_schema_paths()`. That means a supported manifest like `.wesley/config.json` can resolve `schema lower` correctly via `resolve_manifest_relative_path()`, yet `config changed-schemas` will miss the same schema because Git-style changed paths are compared against unresolved entries like `../schemas/core/**`.\n\n

🤖 Prompt for AI Agents

\n\n\n\n\n\n\n\n","crates/wesley-cli/src/main.rs",466,"_🗄️ Data Integrity & Integration_ | _🟠 Major_\n\n

🧩 Analysis chain

Suggested fix

\n\nChange the `path` in each `actions/upload-artifact` step from:\n```diff\n- path: reports-by-schema\n+ path: reports-by-schema/${{ matrix.schema_set.id }}\n```\n

\n\nUpdate all three upload steps to target the schema-specific subdirectory directly.\n\n\n\n

📝 Committable suggestion

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🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn @.github/workflows/wesley-holmes.yml around lines 218 - 223, The artifact\nupload steps are saving the shared reports-by-schema parent directory instead of\neach schema’s own folder, which causes an extra path level on download. Update\nthe three actions/upload-artifact steps for holmes-report, watson-report, and\nmoriarty-report to use the schema-specific reports-by-schema/${{\nmatrix.schema_set.id }} path so the extracted artifacts place each schema ID\ndirectly under the reports root. Use the existing matrix.schema_set.id value and\nkeep the upload naming unchanged.\n```\n\n

\n\n\n\n\n\n\n\n",242,"_🎯 Functional Correctness_ | _🟠 Major_ | _⚡ Quick win_\n\n**Fail invalid manifests instead of silently falling back.**\n\nIf `wesley config inspect --json` exits non-zero because `wesley.config.json` is malformed, Line 61 drops into the legacy branch and the workflow keeps going with heuristic schema discovery. That bypasses the manifest-driven gate this PR is introducing and can run HOLMES against the wrong schema set. Only \"manifest absent\" should fall back; parse/validation errors should stop the job.\n\n

🤖 Prompt for AI Agents

\n\n\n\n\n\n\n\n\n\n✅ Addressed in commits c1b6ea7 to a12c552","**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Preserve dot bundle directories**\n\nWhen a manifest uses `bundleDir: \".\"` (or another value that normalizes to empty), this normalization makes multi-schema bundle paths render as absolute-looking roots like `/core` and single-schema paths as an empty string. That breaks the promised `bundleDir/` isolation and can make the workflow write or look for bundles outside the intended project cache; keep `.` as the current directory or reject it explicitly.\n\nUseful? React with 👍 / 👎.",400,"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Reject parent-directory schema ids**\n\nThis validator allows ids made only of dots, including `.` and `..`, but multi-schema bundle isolation later builds paths as `bundleDir/`. A manifest with id `..` therefore validates and resolves to the parent of the configured bundle directory, so generation can write reports outside the intended schema cache instead of keeping bundles isolated.\n\nUseful? React with 👍 / 👎.",405,"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Resolve changed schemas against the manifest directory**\n\nFor supported non-root manifests such as `sub/wesley.config.json` or `.wesley/config.json`, schema commands resolve `schemaPaths` relative to the manifest path, but `changed-schemas` passes the raw manifest into selection. A repo-relative Git diff like `sub/schema.graphql` will not match a manifest-relative `schema.graphql`, and the emitted matrix path would also be wrong for the workflow; normalize schema paths and bundle dirs relative to `manifest_path` before selecting.\n\nUseful? React with 👍 / 👎.",461,"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Honor silent PR comment mode**\n\nWhen a manifest sets `commentMode` to `silent`, this job still runs for every selected PR because the condition only checks the event and schema count, and the detect job never propagates the manifest's comment mode. That makes the newly documented `silent` mode ineffective and still creates or updates a HOLMES PR comment.\n\nUseful? React with 👍 / 👎.","**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Isolate Moriarty cache per schema set**\n\nWith more than one schema set, each matrix leg passes a different `bundle-dir` into `holmes-setup`, but that action caches `${{ inputs.bundle-dir }}/history.json` under the shared key `moriarty-${{ github.sha }}` and restore prefixes that do not include `matrix.schema_set.id`. This lets the previous run's history for one schema be restored into another schema's bundle, so Moriarty forecasts can be computed from the wrong schema history; include the schema id in the cache key or avoid sharing the cache for matrix runs.\n\nUseful? React with 👍 / 👎.",321,"**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Fail on invalid manifests before falling back**\n\nWhen `wesley.config.json` exists but is malformed or fails validation, `wesley config inspect` exits non-zero just like the no-manifest case, so this `else` takes the legacy detector path and can let CI proceed while ignoring the bad manifest and schema-set matrix. Since this repo now commits a manifest, fall back only when no manifest is present and fail on parse/validation errors.\n\nUseful? React with 👍 / 👎.","\n### 💡 Codex Review\n\nHere are some automated review suggestions for this pull request.\n\n**Reviewed commit:** `f1b3a5f7d5`\n \n\n

ℹ️ About Codex in GitHub

","\n### 🚢 SHIPME\n\n[SHIPME] PASS · HOLMES fixture · sha b13e9ee\n","\n\n# 🔍 The Case of Pull Request #650\n\n## Schema Sets\n\n- `ecommerce`\n- `reference`\n\n\n\n## Schema Set `ecommerce`\n\n### Plain-English Readout\n\n- **Holmes (evidence investigation)**: Holmes says this change looks ready to ship.\n- **Watson (independent verification)**: Watson found verification concerns. Most important concern: No evidence citations were available for trust analysis.\n- **Moriarty (trend forecast)**: Moriarty does not have enough historical data yet to forecast readiness.\n\n## Suggested next actions\n\n1. Resolve Watson’s verification concerns before trusting the Holmes verdict as final.\n\n

🕵️ SHA-lock HOLMES full report for ecommerce (click to expand)

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🩺 Dr. WATSON full report for ecommerce (click to expand)

\n\n

🔮 Professor MORIARTY full report for ecommerce (click to expand)

🕵️ SHA-lock HOLMES full report for reference (click to expand)

\n\n### 🕵️ SHA-lock HOLMES Investigation\n\n- Generated: 2026-01-01T00:00:00.000Z\n- Commit SHA: b13e9ee2cab1eed967743547e674370837699a6e\n- Bundle Version: 2.0.0\n\n> ⚠️ Evidence valid only for commit `b13e9ee`\n\n## 🔍 Executive Deduction\n\n\"Watson, after careful examination of the evidence, I deduce...\"\n\n**Weighted Completion**: ██████████ 95.0%\n**Scores**: SCS 95.0% · TCI 90.0% · MRI 10.0%\n**Verification Status**: 2 claims verified\n**Citation Quality**: 2 exact · 0 whole-file · 0 coarse\n**Evidence Trust**: strong\n**Ship Verdict**: ELEMENTARY\n\n## 🧩 SCS Breakdown\n\n| Component | Score | Coverage |\n|-----------|-------|----------|\n| Sql | 100.0% | 1.00/1.00 |\n| Types | 100.0% | 1.00/1.00 |\n| Validation | 100.0% | 1.00/1.00 |\n| Tests | 100.0% | 1.00/1.00 |\n\n## 🧪 TCI Breakdown\n\n| Component | Score | Coverage | Note |\n|-----------|-------|----------|------|\n| Unit Constraints | 100.0% | 1/1 | N/A |\n| Unit Rls | 100.0% | 1/1 | N/A |\n| Integration Relations | 100.0% | 1/1 | N/A |\n| E2e Ops | 90.0% | 9/10 | N/A |\n\n## ⚠️ MRI Breakdown\n\n| Component | Risk Share | Points | Count |\n|-----------|------------|--------|-------|\n| Drops | 0.0% | 0 | 0 |\n| Renames Without Uid | 0.0% | 0 | 0 |\n| Add Not Null Without Default | 100.0% | 1 | 1 |\n| Non Concurrent Indexes | 0.0% | 0 | 0 |\n\n## 📊 The Weight of Evidence\n\n\"Observe, Watson, how not all features carry equal importance...\"\n\n| Element | Weight | Status | Evidence | Strength | Deduction |\n|---------|--------|--------|----------|----------|-----------|\n| schema | 5 | ✅ Exact SQL & tests | test/fixtures/examples/.wesley-cache/reference/shipme-fixture/tests.sql:1-1@b13e9ee | exact | Elementary! |\n\n## 🚪 Security & Performance Gates\n\n\"Elementary security measures, Watson...\"\n\n| Gate | Status | Evidence | Holmes's Ruling |\n|------|--------|----------|-----------------|\n| Migration Risk | ✅ | MRI: 10.0% | \"Trivial risk\" |\n| Test Coverage | ✅ | TCI: 90.0% | \"Excellent coverage\" |\n| Sensitive Fields | ✅ | 0 fields | \"All secured\" |\n| Evidence Quality | ✅ | 2 exact · 0 whole-file · 0 coarse | \"All 2 citations resolve to exact line spans.\" |\n\n## 📋 The Verdict\n\n✅ **ELEMENTARY** - Ship immediately!\n\"The evidence is conclusive. No mysteries remain.\"\n\nSigned and sealed,\n- S. Holmes, Consulting Detective\n\n[END OF INVESTIGATION FOR COMMIT b13e9ee]\n\n## 🧵 Command Run\n\n- Run ID: run-0c6a7e9d-075c-4a84-b536-f67e84f3c65f\n- Transmutation: holmes-investigate\n- Command: investigate\n- Status: completed\n- Ledger: /home/runner/work/wesley/wesley/test/fixtures/examples/.wesley-cache/.wesley-cache/ledger\n\n

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🩺 Dr. WATSON full report for reference (click to expand)

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🔮 Professor MORIARTY full report for reference (click to expand)

\n\n---\n\n

📚 Glossary (what the Holmes terms mean)

\n\n---\n\n_Machine-readable reports are grouped by schema set in workflow artifacts._\n\n---\n\n*Filed at 221B Repository Street*\n","\n\n\n[![Review Change Stack](https://storage.googleapis.com/coderabbit_public_assets/review-stack-in-coderabbit-ui.svg)](https://app.coderabbit.ai/change-stack/flyingrobots/wesley/pull/650?utm_source=github_walkthrough&utm_medium=github&utm_campaign=change_stack)\n\n\n\n\n> [!NOTE]\n> Currently processing new changes in this PR. This may take a few minutes, please wait...\n> \n>

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⚙️ Run configuration

\n> \n> **Configuration used**: Path: .coderabbit.yaml\n> \n> **Review profile**: CHILL\n> \n> **Plan**: Pro\n> \n> **Run ID**: `7ce88871-f11f-4f23-9d73-9fbeaf8286d6`\n> \n>

\n> \n>

\n>

📥 Commits

\n> \n> Reviewing files that changed from the base of the PR and between f1b3a5f7d5b70186e131628863f06436c7fa584b and 93aee12af4f3ce139e7764688a10212aa9fc9bcb.\n> \n>

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📒 Files selected for processing (13)

📝 Walkthrough

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🚥 Pre-merge checks | ✅ 3 | ❌ 2

✅ Passed checks (3 passed)

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✨ Finishing Touches

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📝 Generate docstrings

\n\n- [ ] Create stacked PR\n- [ ] Commit on current branch\n\n

🧪 Generate unit tests (beta)

\n\n- [ ] Create PR with unit tests\n- [ ] Commit unit tests in branch `v0.2.0/platform-batch`\n\n

\n\n

❤️ Share

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