\n 90\t \n 97\t {title}\n 98\t \n 99\t \n 105\t {subtitle}\n 106\t

\n 107\t

\n 108\t \n 109\t );\n 110\t}\n 580\t iconHeight: Math.round(iconBox?.height ?? 0),\n 581\t headingFontSize,\n 582\t subtitleFontSize,\n 583\t };\n 584\t if (!baseline) {\n 585\t baseline = metrics;\n 586\t // Compact hero mobile scale: 2.75rem icon, 1.45rem heading, 0.875rem subtitle.\n 587\t expect(metrics.iconWidth).toBe(44);\n 588\t expect(metrics.iconHeight).toBe(44);\n 589\t expect(metrics.headingFontSize).toBeCloseTo(23.2, 1);\n 590\t expect(metrics.subtitleFontSize).toBeCloseTo(14, 1);\n 591\t } else {\n 592\t expect(metrics, `${home.path} hero metrics`).toEqual(baseline);\n 593\t }\n 594\t\n 595\t await expectNoPageHorizontalOverflow(page);\n 596\t }\n 597\t });\n 598\t\n",{"_496":600,"_477":478,"_498":484},{"_539":601,"_531":587,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git status --short --branch && git show --stat --oneline --summary HEAD && nl -ba src/components/applications-launcher-page.tsx | sed -n '732,744p' && nl -ba src/components/clinical-dashboard/medication-prescribing-workspace.tsx | sed -n '206,218p' && nl -ba src/components/mode-home-template.tsx | sed -n '72,110p' && nl -ba tests/ui-tools.spec.ts | sed -n '580,598p'\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":20000}","exec_command",{"_496":604,"_477":478,"_498":484},{"_499":-5,"_516":605,"_42":-5,"_502":-5,"_518":606,"_93":520},"gAAAAABqUlIlIE6Nu2HIuG0omdbPKf1JNAlE27QoHZF1QlFWkEpgoS6a41HJwzYmPl6SuZbm9X3_NoP_6LLREUxjLRHLOf9C2wK-qDyhUUE7osBWQetC_MWfw_Vu1CqBkjlrhPxh85nzhkHxQxMo3VaOGPG9T9B_WjlBIP8son3L4KQMV2nZA9Z5PgH-LlKVR3Ilh_z5TdiLQQ2p5N2qGIV70tHdXzez5iphH-4c4ZrwnZLbRtZvZYMNvotmPiiOZXa7lfA97FahoHkQUbq62v0sIzgLsHeLtoIIdrj0R23sRyRLMGL4XbE3w9TBvYRHcjeaxt2Nda6U5Qhnn6M8-QNF9lamop73sDgiQ_RD0InsuXabgX4uJxdzUGRG5V8Cnk1s0ura4kvbW0Bwh1kviLHvyEHSN4qquhVUUtnH3MDU6kDAX81xVDQaJzozvAmQXvzfmYJrUSlqC9gUiOH6m90-qcfl_ilyHYliTYDRZfom1e6rUWwOF85Cm9uLz5YCh04g7juEoctTiqcxBe68ykcPoJJvE1qS_yUoBCy9_YzcVT9X7VmWDc2mGuZfwwREEjo1hWCzl11xMytsf5G0-nHnqCPbOToZ6zgnS7GVpTY30Izt3qj5ot1SoHPFYe56CXDcvR-hWrMOeXniFYy5kO-JwyHQfV3pyiQazTMqUawrTl_iOrDILbu8IFUa_IPfslqd7FxwwLf32vESjoAkLGHVMk_p3uX-gtBRcz489c0y7Gux1FqE8dwDTJsUAEQvlpq3cX1WlP36-xajs9ARqu57Y32TCbctJZboQIBkk41RlEOqWHLuO2saFXtMe5e8oNhYAatZaSaoNjhmcj1mQ1L0lIUpDfcDaTZxzdZfLi5gynZjAQsK4dWl9rQsB-ifC8vaMHkBC-vMZQOtFiT2iKgYGSBbaIPKwt_BQ8aYQ5miD-Sv_EbWewEEMxRdZ0qsGpsndXJ1DmrcqptTijDlp3YB9S4C3txB9RwAiYKMdOGrS2MSe7nNGeQ=",[],{"_496":608,"_477":478,"_498":484},{"_499":609,"_42":610,"_518":611,"_93":520},[],"rs_02c8ed4db34d6f3c016a5252250afc8193aacaeaf71db4cd7d",[],{"_496":613,"_477":478,"_498":484},{"_531":614,"_42":-5,"_502":-5,"_533":615,"_93":535},"call_qOQjHI8HHaxUtSauqpsr1t8k","Chunk ID: 54bc57\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 21\nOutput:\n[work 5ff0a11] Merge commit '70ec6409a11a85e1678eb4b320519624673a94a0' into work\n",{"_496":617,"_477":478,"_498":484},{"_577":618,"_579":619,"_581":620,"_583":584,"_482":32,"_586":32,"_42":614,"_588":621,"_590":591,"_489":114,"_93":592},"[work 5ff0a11] Merge commit '70ec6409a11a85e1678eb4b320519624673a94a0' into work\n","/bin/bash -lc 'git commit --no-edit'",[622],"62710",{"_579":623,"_93":595},"git commit --no-edit",{"_496":625,"_477":478,"_498":484},{"_539":626,"_531":614,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git commit --no-edit\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":20000}",{"_496":628,"_477":478,"_498":484},{"_499":-5,"_516":629,"_42":-5,"_502":-5,"_518":630,"_93":520},"gAAAAABqUlIj1A7Dcq9pPSTJDMpNCQyytDN2GGjPni77w5CKLGh2moFnOPmsa_K3q91ALxzzyidYK23DOQe45fQQBnyQq47AYNkMUT708LCHymzjfAWfM8WyJlE3UM6NQ4UeC2UNyNz9bJ7UMX5IHvy7hlBULUA3-fnRmTKn9EHbEcNxHy260gHnmyms_GDbmraW3P-M84qjN7Ia0ZPIUSKJgEMPQAruAiu53mShpqx80DWnnM0e7px0izgajpVd2Qss3UG3AjUWB3Ws24kNmhvllH-13_KSbCftoIi84CmcpYecXqz2o-uitwvpIaUm_a8tmoaNBXKRGaWwzYoz16CSe__sjHKhsinKxe1emXfndbuDk4gsKmc38dFbhOxws9SEWxEDwYoqfBRRIOYrHOO3M9nKr5Lfv3VduClWJ4zUZlaosCRd8NKESCNdDD0FGioMe1QLMD_v0Ena9MjwSwklkLt9OZLgeahK5zUf02MVr42ta6xMD4V0z1F4ntBw-mRnk5pET-T6Itz9QBXUu3b7XZrxGrrOuPghsfzhUb390Ycjg1L58euXG-1W8IOkmK4VJwAIUaHzw7JjHXuojNxaE_qY53GLlBr-C5fbsmmxNsg9mnw6Ghnhf0B-TaSbVEJGZc6dmXVxajZaczteiCD6IyeMqC6pG1YrET0RxC70terYXIE5gW13dKPYQBVTDCDLA2kRV9X1AVODHaeeZ-JIDIsTZjxJ92_eVH0fzeZgP-jYlsNxZs6nwgHfeU3AcAVAQxVjyitqVjqkwZpL61Z-t8QCwDmBMln8vhkwOwthyFSXiq65HS7-Tvj4QfAdM1gzAnI9i1F9MROn0x6FTuH2UUzS5L2feDaxM6i1RHuUCo4A_LonUIUjwpUsJ-hydePAYqzAtDArAjYYpc6DXsXQ8m_-hCabPf_W2Rt5zMmU5OryYCVuLzs=",[],{"_496":632,"_477":478,"_498":484},{"_499":633,"_42":634,"_518":635,"_93":520},[],"rs_02c8ed4db34d6f3c016a525222b7548193b567b3a6c38a4789",[],{"_496":637,"_477":478,"_498":484},{"_531":638,"_42":-5,"_502":-5,"_533":639,"_93":535},"call_9XONh9KwOmJAw8B2u3ULRm7V","Chunk ID: 99f1f3\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 41\nOutput:\n## work\nM .github/pull_request_template.md\nM .github/workflows/ci.yml\nM .github/workflows/codex-autofix-review-comments.yml\nM .github/workflows/sast.yml\n195\n",{"_496":641,"_477":478,"_498":484},{"_577":642,"_579":643,"_581":644,"_583":584,"_482":32,"_586":32,"_42":638,"_588":645,"_590":591,"_489":114,"_93":592},"## work\nM .github/pull_request_template.md\nM .github/workflows/ci.yml\nM .github/workflows/codex-autofix-review-comments.yml\nM .github/workflows/sast.yml\n195\n","/bin/bash -lc 'git diff --cached --check && git status --porcelain=v1 -b | head -5 && git diff --cached --name-only | wc -l'",[646],"15751",{"_579":647,"_93":595},"git diff --cached --check && git status --porcelain=v1 -b | head -5 && git diff --cached --name-only | wc -l",{"_496":649,"_477":478,"_498":484},{"_539":650,"_531":638,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git diff --cached --check && git status --porcelain=v1 -b | head -5 && git diff --cached --name-only | wc -l\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":652,"_477":478,"_498":484},{"_499":-5,"_516":653,"_42":-5,"_502":-5,"_518":654,"_93":520},"gAAAAABqUlIfLmN5M2APs4HhUPWxdnJhHCeNukrJCrvJ4LRfK9bihWBmyHlDKCTBMRv9thLeChuarZlCSvmPj-3Zd1rnOzG81VkiC-Uq2g4kEMgCuwP8KmMLfYQEPJZPoufZmz-Z7asKh4VpuFaj6jB83jNETuUNt441AF-euwhLuC4GEOLYkHosIuoV_jcD573E6QDEOfeOzG2UBrwEPpPC51IiCO6PiwgRr93OeiQMLWfAlnw0G-bVq0V_kac1tiFJB5I3MU0GO1CDaTS49z4oqNnBHe2WmGblHW_0AGhnU63NCjw78Elyu3hD7pNAq3lN9b4fqkQ6LYWtqG8t7Aqgij8xvO_3oAs6pMTt3oq2se0jhRhlPVtDhcHZtBUiS-osKZiYylBbrFIBGw8Kr8Kgl57ILpg74L2R04SPf1GrIO4Q1REGqQwwMkSgJpSxthEnI3tpE363EM6iuWX1ifNrFNaObwdaA_-2SaeYDQW-a9BrsArpMswtY6H9huhfEYwRWVW-PDhHrPxUeoVarubYccnEj_RC4oi1uz7kx1AEASWzYJ7BobqIHayjQ9r0VSNZMAJfTFnHc4l36LgoIryLRFnEQJVJO5BZAj5Qe7qWroqvgYZPDIytnsb-cmHoctI8OFblNlNE_IIWIovdjS3UvXJGWMS0ZKRJDXHxkR5gMKh3Y-D-QX6-2GHzxu1x2DpzC4txl4l4yiPzb0dh47kqLJzpTw_Czp49IiTFE1JBPNz_al-EF-bxGQk2MX_O3TW4JUysksDoUZ-xs43W8Z2JtB49fkCTbZ9ujOVXsGFtjEnyhoUTH1gmOOFfhZw4yaoN34lEQqbjtn0rzQ8uYDrwTypJ3984zFP96gEjPSsGkPMKIVa8A2uAdX7rgONdPW5VWfUi2sfnm7FtKkL7WJ_sx19mK6TO1Jx1zFJMw8JbdX-ymzYXCMBFXYdn1zBGuJtyab1-IMZs_PUKffUxi4cuLIDLXba6jtdc7dIItwnyKYwlO4EDDZx9YHYaA7khc5po9gAnjWKCJykuOvw1bqhEOmduA2qHSrJQa6xVpmvbqMo7Fp0QNhPP3asu55U26j7DlIOyiqR9",[655],{"_46":656,"_93":523},"**Considering installation issues**\n\nIt seems I don't need to install anything, which is good. Maybe the node_modules folder is just absent. I'll take note of that. It sounds like I need to do a commit merge, but before that, I should check for any unresolved issues. It's always best to resolve those before moving forward! I wonder if I could tackle those issues first.",{"_496":658,"_477":478,"_498":484},{"_499":659,"_42":660,"_518":661,"_93":520},[],"rs_02c8ed4db34d6f3c016a52521df198819382157994194d42f1",[656],{"_496":663,"_477":478,"_498":484},{"_577":664,"_579":665,"_581":666,"_583":584,"_482":667,"_586":32,"_42":668,"_588":669,"_590":591,"_489":114,"_93":592},"npm warn Unknown env config \"http-proxy\". This will stop working in the next major version of npm.\n11.4.2\ntsc_exists:1\n","/bin/bash -lc 'export PATH=\"$HOME/.nvm/versions/node/v24.18.0/bin:$PATH\"; node -v; npm -v; test -f node_modules/typescript/bin/tsc; echo tsc_exists:$?; git diff --check'",[670],181,"call_UPLMrfrjKcGXTOS3tlMjmNEC","19484",{"_579":671,"_93":595},"export PATH=\"$HOME/.nvm/versions/node/v24.18.0/bin:$PATH\"; node -v; npm -v; test -f node_modules/typescript/bin/tsc; echo tsc_exists:$?; git diff --check",{"_496":673,"_477":478,"_498":484},{"_531":668,"_42":-5,"_502":-5,"_533":674,"_93":535},"Chunk ID: b0431d\nWall time: 0.0804 seconds\nProcess exited with code 0\nOriginal token count: 32\nOutput:\nv20.20.2\nnpm warn Unknown env config \"http-proxy\". This will stop working in the next major version of npm.\n11.4.2\ntsc_exists:1\n",{"_496":676,"_477":478,"_498":484},{"_539":677,"_531":668,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"export PATH=\\\"$HOME/.nvm/versions/node/v24.18.0/bin:$PATH\\\"; node -v; npm -v; test -f node_modules/typescript/bin/tsc; echo tsc_exists:$?; git diff --check\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":679,"_477":478,"_498":484},{"_499":-5,"_516":680,"_42":-5,"_502":-5,"_518":681,"_93":520},"gAAAAABqUlIcupOrd77GpgYQKJRvpiPgxnS1A3a_Jp6uz4v2IX8d_pCXjanYmXtg75MiBEqrsxeAzmIHDtqge41ZxzaCImL3_C9V5LMOsr1x-0mou40dHVFYfy0OLypzWkRcTz0kN5i1314keQ4_6yXOb6YTC3B1OLLxwP5DyM_J9SaS1BPbbPWLrMFw0HDar1r7yqr6ZwUFjyLlK3XZbXOgXLeJI4pPCNfLjlT-xNnYZFLG_rzdZ9pV-RWDP8nnwBKlVMef407SRWwYXqxDFUl5aaJ-crGOHTNc2OHJVQ2BrEgjzd03hRFoBWcS4GXGW1nQm4f3P1Br3FdKHKEAKWMprhmALNPLE6ixDu5iLD5H-c1MHzEQeeF-6UHpq7x_YRthQzWL5Jsd3Ms7Ix9VQqsXj1Jt1_5-z87UinonrUEeMCyuXTsqV0c2wdR9kCeZgGTKWXdOJGAJYcKiYT6B4xdMHG-kKF15qjZNWro4IN0aC8P-Bw_Phj_a9-DuUMv06SsVzuC53DpUA_5P2iH6tJ-mqcei62kA1b52b1ZOGhuwOGQEQzEQ9_Kr_ByRlzxBb9ufbX-oKzhYYZng1JpNJSe_c6PV4XMnPoAWm-UVJhQ3rRqURZGie5_DtcOYkP6EIcOml2ULigUqIQ5uKEpXwW3Q9TwwO0XcojHoPmNjek5Bi6Q5y4qV4Pqzd0Km54yKJX1qGSZptb3lkpk2clP42yAKH-tuiJXGoUmpDjtepf5tIogJUML1_QtpeqarxcUf66lz72W_WOzDTlkrfc49xJNGV7R9I14n10F5tEoe3UXSUNXfRdHTpvUK-9m8D7wEltAG1YA9U9BtP80SlB_43ixex_eiAc-VinG2GyD4tzd3k6y_t5ZLWKHPTzAgWVpPGyzcMYWyP3hX3rl4I7-khi7afrnCVoYAaFf2D71clSNQN8FYHNqgp03FnhGFNyjx0TUtUt00Y4-rgQFuLVAlR2LAlydMRSLosAU3uIxcA7pXRIpQMSwAZ8YUaK05t2hZmBTVh4X4p-yk",[682],{"_46":683,"_93":523},"**Evaluating dependencies**\n\nI'm looking at this issue with Node24 and wondering about dependencies. It seems something might be off, but I'm not entirely sure. I also need to consider whether to use PATH in this situation. It’s puzzling, and I definitely don’t want to jump to conclusions without clarity. I’ll take a step back and check things systematically to ensure I’m on the right track!",{"_496":685,"_477":478,"_498":484},{"_499":686,"_42":687,"_518":688,"_93":520},[],"rs_02c8ed4db34d6f3c016a52521a1f788193b5b3e6fea711fc65",[683],{"_496":690,"_477":478,"_498":484},{"_531":691,"_42":-5,"_502":-5,"_533":692,"_93":535},"call_xdUrfRhjTgdi68OrhkLaQeyd","Chunk ID: b203da\nWall time: 0.0000 seconds\nProcess exited with code 1\nOriginal token count: 184\nOutput:\nAll matched files use Prettier code style!\nnpm warn Unknown env config \"http-proxy\". This will stop working in the next major version of npm.\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 typecheck\n> node ./node_modules/typescript/bin/tsc --noEmit\n\nnode:internal/modules/cjs/loader:1210\n throw err;\n ^\n\nError: Cannot find module '/workspace/Database/node_modules/typescript/bin/tsc'\n at Module._resolveFilename (node:internal/modules/cjs/loader:1207:15)\n at Module._load (node:internal/modules/cjs/loader:1038:27)\n at Function.executeUserEntryPoint [as runMain] (node:internal/modules/run_main:164:12)\n at node:internal/main/run_main_module:28:49 {\n code: 'MODULE_NOT_FOUND',\n requireStack: []\n}\n\nNode.js v20.20.2\n",{"_496":694,"_477":478,"_498":484},{"_539":695,"_531":691,"_42":-5,"_502":-5,"_194":696,"_561":-5,"_93":563},"{\"session_id\":8578,\"chars\":\"\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}","write_stdin",{"_496":698,"_477":478,"_498":484},{"_577":699,"_579":700,"_581":701,"_583":584,"_482":702,"_586":341,"_42":703,"_588":704,"_590":591,"_489":705,"_93":592},"npm warn Unknown env config \"http-proxy\". This will stop working in the next major version of npm.\nChecking formatting...\nAll matched files use Prettier code style!\nnpm warn Unknown env config \"http-proxy\". This will stop working in the next major version of npm.\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 typecheck\n> node ./node_modules/typescript/bin/tsc --noEmit\n\nnode:internal/modules/cjs/loader:1210\n throw err;\n ^\n\nError: Cannot find module '/workspace/Database/node_modules/typescript/bin/tsc'\n at Module._resolveFilename (node:internal/modules/cjs/loader:1207:15)\n at Module._load (node:internal/modules/cjs/loader:1038:27)\n at Function.executeUserEntryPoint [as runMain] (node:internal/modules/run_main:164:12)\n at node:internal/main/run_main_module:28:49 {\n code: 'MODULE_NOT_FOUND',\n requireStack: []\n}\n\nNode.js v20.20.2\n","/bin/bash -lc 'npx prettier --check src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts && npm run typecheck'",[706],2048,"call_3EC1uobeEXaagX3NdeqQtUOv","8578","failed",{"_579":707,"_93":595},"npx prettier --check src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts && npm run typecheck",{"_496":709,"_477":478,"_498":484},{"_531":703,"_42":-5,"_502":-5,"_533":710,"_93":535},"Chunk ID: 95c631\nWall time: 1.0010 seconds\nProcess running with session ID 8578\nOriginal token count: 31\nOutput:\nnpm warn Unknown env config \"http-proxy\". This will stop working in the next major version of npm.\nChecking formatting...\n",{"_496":712,"_477":478,"_498":484},{"_539":713,"_531":703,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"npx prettier --check src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts && npm run typecheck\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":715,"_477":478,"_498":484},{"_499":-5,"_516":716,"_42":-5,"_502":-5,"_518":717,"_93":520},"gAAAAABqUlIVlAUSpX93PK70gVVf9A2eh5X5Lp_nsEUzzeuzgrEwKEKwn6Rc-D7W9kBpZgsag19PoGEaix-pEe31ja435s_PQsWlafAd8N7ih1vjZX7PfEG5aXK33duOPw5XRDC3-f7yk9sLuEKdkeR7vElS88auvgzA5Sx8XKKpmbrxK769PcvNKXr47bxFMgY-jg2HD3DV_POJfkNuRQVJRj-BPvEMbyVD5Pb1XYMIytvA4-ttwCq7H1k1vu8dAZoREk4bbJiApSdfCBphKsUNQ8yevK2vi9hXC6faWBYcbXM5ooivUPvrSFU91lfRI78IfBtgvVqMQr9eEB4VvfiLF3uMcXQvpOL863YmrknKGkqSw6M72t26pSl02vbXlkExaw6MGQ4pn-jbMBpnvKm7DF2u-s50wfCQT7i7OpFWLfrUpk-RmudOLGsMUZBuuErKFx__qLp3E3FreQi4SjXzbuxuVVAxXc0wGy14hJUC2wV4l8uBaMvOTmfnAV-0cPC1yXkxxfql60EY-4vDhk24GS8rLRfLoEPq-6rDvdmEnmqY3_XwGRFZXu0-El95foWxlUyFhunAcI4TNJ5sUx82o0PfScZG0nbrNkdAWWuwimoW6ZTMS1Bk27V96ih5TzDX7E0H6C4XVdNKyeyFPVfA90gSkwoVYwLaf6zrK6yOC-XqP8evRDoVbkBg4MgVNs90S_lUXDEfBm1gMDIISeZRucSoUTMRNVLTs9IsrmNRvLsXxFNyZongzHvKE7ZLMAKY8m_jrDXGPOqoyipYvN7ccG3HszDDQEIMGTNy7F_lRmnqpLzhZ52jBBvvI48dsXiKPGfuctM7d89XN8opZL0egHkyIjpwwyC2L4AjVs7JXrBSxfI5bidT-FUhvMCcV3z6pB6PhTAiUXVCzl2p68E7kbTLDKCxbpCOsemGWxE4c11f_EWVKpst0rumuDEHeOXBcZxuQY0nVaRw_BEQZlhryPo-vnzp3_k-rHPY41iqhLOnppaPiydq16caMu_2dsIKSGfN0y4t",[718],{"_46":719,"_93":523},"**Running Prettier check**\n\nI need to run Prettier specifically on resolved files. My plan is to do this using the command `npx prettier --check`. It seems straightforward, but I want to ensure I'm doing it correctly by focusing on those resolved files. I’ll be checking for formatting issues with this command to maintain clean code. Let’s get that organized and see if everything checks out cleanly!",{"_496":721,"_477":478,"_498":484},{"_499":722,"_42":723,"_518":724,"_93":520},[],"rs_02c8ed4db34d6f3c016a52521443f481938e4e38709448384f",[719],{"_496":726,"_477":478,"_498":484},{"_577":727,"_579":728,"_581":729,"_583":584,"_482":730,"_586":341,"_42":731,"_588":732,"_590":591,"_489":705,"_93":592},"npm warn Unknown env config \"http-proxy\". This will stop working in the next major version of npm.\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 format:check\n> prettier --check . src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts\n\nChecking formatting...\n[warn] docs/audit/repo-audit-2026-07-01.md\n[warn] docs/database-drift-detection.md\n[warn] docs/ingestion-concurrency-fix-workorder.md\n[warn] docs/process-hardening.md\n[warn] scripts/ci-change-scope.mjs\n[warn] scripts/enrich-documents.ts\n[warn] src/app/api/ingestion/jobs/[id]/retry/route.ts\n[warn] src/app/api/ingestion/quality/route.ts\n[warn] src/components/clinical-dashboard/answer-content.tsx\n[warn] src/components/clinical-dashboard/dashboard-contracts.ts\n[warn] src/components/clinical-dashboard/DocumentManagerPanel.tsx\n[warn] src/components/clinical-dashboard/favourites-command-library-page.tsx\n[warn] src/components/clinical-dashboard/mode-action-popup.tsx\n[warn] src/components/document-search-live-opener.tsx\n[warn] src/lib/app-modes.ts\n[warn] src/lib/clinical-safety.ts\n[warn] src/lib/clinical-vocabulary.ts\n[warn] src/lib/image-filtering.ts\n[warn] src/lib/openai.ts\n[warn] src/lib/rag-provider.ts\n[warn] src/lib/supabase/health.ts\n[warn] src/lib/types.ts\n[warn] tests/deep-memory.test.ts\n[warn] Code style issues found in 23 files. Run Prettier with --write to fix.\n","/bin/bash -lc 'npm run format:check -- src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts'",[733],20570,"call_WzJFwvyDAFVgT4e8h2vvRB2o","87079",{"_579":734,"_93":595},"npm run format:check -- src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts",{"_496":736,"_477":478,"_498":484},{"_531":737,"_42":-5,"_502":-5,"_533":738,"_93":535},"call_VHYiXtkuX8kZsn5aidqzYnnL","Chunk ID: a16669\nWall time: 0.8091 seconds\nProcess exited with code 1\nOriginal token count: 28\nOutput:\n[warn] tests/deep-memory.test.ts\n[warn] Code style issues found in 23 files. Run Prettier with --write to fix.\n",{"_496":740,"_477":478,"_498":484},{"_539":741,"_531":737,"_42":-5,"_502":-5,"_194":696,"_561":-5,"_93":563},"{\"session_id\":87079,\"chars\":\"\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":743,"_477":478,"_498":484},{"_531":744,"_42":-5,"_502":-5,"_533":745,"_93":535},"call_MhdptrpypmQl8y9M0uQ4ZK3O","Chunk ID: 3899d0\nWall time: 5.0005 seconds\nProcess running with session ID 87079\nOriginal token count: 158\nOutput:\n[warn] src/components/clinical-dashboard/answer-content.tsx\n[warn] src/components/clinical-dashboard/dashboard-contracts.ts\n[warn] src/components/clinical-dashboard/DocumentManagerPanel.tsx\n[warn] src/components/clinical-dashboard/favourites-command-library-page.tsx\n[warn] src/components/clinical-dashboard/mode-action-popup.tsx\n[warn] src/components/document-search-live-opener.tsx\n[warn] src/lib/app-modes.ts\n[warn] src/lib/clinical-safety.ts\n[warn] src/lib/clinical-vocabulary.ts\n[warn] src/lib/image-filtering.ts\n[warn] src/lib/openai.ts\n[warn] src/lib/rag-provider.ts\n[warn] src/lib/supabase/health.ts\n[warn] src/lib/types.ts\n",{"_496":747,"_477":478,"_498":484},{"_539":741,"_531":744,"_42":-5,"_502":-5,"_194":696,"_561":-5,"_93":563},{"_496":749,"_477":478,"_498":484},{"_499":-5,"_516":750,"_42":-5,"_502":-5,"_518":751,"_93":520},"gAAAAABqUlIJtWNvqQSh5o80ROpG6hyxKHQfVnngYVsSb9K0pW05_Z8I2jLmy3I3bNLcZD6Te91DJ-i0deK82JjFvQkVi64C069LfUZX7baZWUVsJCDvHxCdJq6LOsmEtonyg1N1jdHDv99ZPFD8pwqCaRGZhkcF_JHXtY6xSXcCnQuvKRFsCT9vFe7aMJ96t6D34RHVTkdWxMM3mQHFvxexKDfWswdTBONpSjQiAzz_OvYT3tTNnfkFStiYm71pwr5mE60pXSz8L7uCi592bMImi5wXl_UjPpQ2W13vch9XY0mGa_LIlx7iBOopMLp-SXIgic6gqhBPGY1-CXcIl129A5KdrYwHTYPuYIfd9ObByWRhkvfx_sDV7j1xOCQKTEcQfhsKr1Cy4box2NqOrdyMcSNX8gdpb_y9_hm6aJIOC-Jc88gnvbFE5px4Gmxb47WEcQm3mawC0qHB2Px8ZdJttJ2mH0WZXs_wGjTMhD9NgVoI8-qaXoKT4Dgt4JbPSL_zSeyvoJNxhNbCXAg5HZz3Nyioku1K26O2NRsF8KyWq_C8-eBX9PBRViaSRyjPpWY7GB7ATeCKLaoDkLaRUXgfriDv_Uqofyri36bJDAlG6HzVm-jQUpUQDMK-ADH46zrWKieRBo0Y0-GQWtrq8g8yJgtAmDn4lqdBXmQLqoLDgdw0uGjIxkQlF5QtyxKl5_wSSO9nPuWPn8Ne6KUDRatEhfNNro6Z1BVQVgzMVGIayZYzrQdHOZnc9Zo7lmBhPpyu1KMzF4VCN5CDaVTyOLWTrKPZy25hEXABJ-G9o5ctlbu4kZr5cMRt_SqMW-QMObdbY4TgWkNBW8b8DiSRbGWuTr0yEb3j70Vou8xIvzP-2fKgFfpq8SZFpJEUEIOk0rB-ef82FSpOolXm1ophFE2tOdZlg_6Pe-AWk2M_kwyu38Oy8eYJGpFS43IOpDRqA7F3QNmKvD2_ibI6MY1kA6v4NFNghEg8Cw==",[],{"_496":753,"_477":478,"_498":484},{"_499":754,"_42":755,"_518":756,"_93":520},[],"rs_02c8ed4db34d6f3c016a5252092034819384ca10273ab1037c",[],{"_496":758,"_477":478,"_498":484},{"_531":759,"_42":-5,"_502":-5,"_533":760,"_93":535},"call_gi5JxHZ3RfZKFjYJ4GuBAqrr","Chunk ID: 3a0060\nWall time: 5.0029 seconds\nProcess running with session ID 87079\nOriginal token count: 85\nOutput:\n[warn] docs/audit/repo-audit-2026-07-01.md\n[warn] docs/database-drift-detection.md\n[warn] docs/ingestion-concurrency-fix-workorder.md\n[warn] docs/process-hardening.md\n[warn] scripts/ci-change-scope.mjs\n[warn] scripts/enrich-documents.ts\n[warn] src/app/api/ingestion/jobs/[id]/retry/route.ts\n[warn] src/app/api/ingestion/quality/route.ts\n",{"_496":762,"_477":478,"_498":484},{"_539":741,"_531":759,"_42":-5,"_502":-5,"_194":696,"_561":-5,"_93":563},{"_496":764,"_477":478,"_498":484},{"_499":-5,"_516":765,"_42":-5,"_502":-5,"_518":766,"_93":520},"gAAAAABqUlIBfbn_1hBshF4g-xZ5XEASwL-ddPYcAkDxAgSZ2ddl9ED9Vt233ffcq-lg-czlNdqnj_48hxnWLQcmlfGUWUmFfgmhqrEA6kkrGUr6U8iAxBuF7yzskJOqFDP2v7G1EtX4PqsKeOZfx1BEJHKk5ASA-cLHxSlwZdbpQBKD9Sv7wbMlt76vJad2PZMHRfMIUlX-QlcV_02GvSyM0TNnmnXifYo1q4YkQnt_K_PeHSWwKvLCx92zk5nKo1NuTcbnXrWc2067lxe9_0QvW6EFcfM7N6Byi4XEnW0EKLSNWisVGICorOJDzGFtZRirfhdW437CR_xdCopCAJBXfvhWucAUt76em1VXcFBWlKkFV2vOtF2rzGGX3_xrVohcb3nL4bZtLXfO2Ii_Tih-LEHIhH-6puDxcOyFW32AjV8f1rkAnOX-zjqgjOvAPoJ_oCl8b8k9meoIYR1e90Q2pxjXCKjfB8ToE6dH8HZE0PfbqU1MeW_5hBPpl0vBsIQT9spTLUgsFvlmnr1eQcYKnVbXuLinMIZQFpB85gzIuKNxPi5_HrfVtcgzJaX72IL7okzvZ5uZgR4fffVFVBvu3BFD_LZf3XAZIbATdQHKNisMCZIjOO8xipSm3yjQnWNb5xyvd3URjml2aBZmmzzt6JHvQQ4bDeQqtZNJq2jrSOKW4ZY6ll55UHEOHHUkn8oGVp6Lr7Meq0aBkd4V3sw8bVOy4QaXJLMRty8zI1sZBOpPxq50XaJvHQ0AoI4m7CA17GhAe2aaDKkIeeMuuJiU8uvtNIxMdx5gzV2KteoI2pPECfrOF7B6vLQLgOsxfrLM1ZJ8b9myZT9mWVGGmnIkInWQu37dkXVuPZxLN4KVYCdCLJuVz0PeTa7xPsPXM7PJvLHFrXxlTo5R_ga1QENfDepnK8CyHbObvWL2dbYeg5jg5Ai09EzxWOYv0bdpOIcHEnEA_ampE10ZSi5dxz0crkSU06FN8P5G9mh6N_GvWPFc11q5xGM=",[],{"_496":768,"_477":478,"_498":484},{"_499":769,"_42":770,"_518":771,"_93":520},[],"rs_02c8ed4db34d6f3c016a525200bf8c81938507073de22ed946",[],{"_496":773,"_477":478,"_498":484},{"_531":731,"_42":-5,"_502":-5,"_533":774,"_93":535},"Chunk ID: 8c8be8\nWall time: 1.0012 seconds\nProcess running with session ID 87079\nOriginal token count: 96\nOutput:\nnpm warn Unknown env config \"http-proxy\". This will stop working in the next major version of npm.\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 format:check\n> prettier --check . src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts\n\nChecking formatting...\n",{"_496":776,"_477":478,"_498":484},{"_539":777,"_531":731,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"npm run format:check -- src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":779,"_477":478,"_498":484},{"_499":-5,"_516":780,"_42":-5,"_502":-5,"_518":781,"_93":520},"gAAAAABqUlH9BGxZF2aPqqffoM29Yqj-7916bPezsbMAu6TeTO3L802_ARFxUY3qy0EmthUjPd7vkQGS5HKye6y3zB7H8Miaa_kpZnA9SGR1C1TuDw2AgkXwoMZMBSOX7CjebB0LG10SzMUItdkY3dOvfRi-7JIrKxJ8T9NFqqOnFes2nXBXcruTQfLy_mlU_IXPjI31fN3RRdoGyXGLVdzmyb6WdFvOopoElZ-kBY5hijCIP90WER-fcdCBRQJpWOYifFKokSeh7DzeHH9OhdWlOqt_mlqgpGFij97sEfSNGBqSi3OixFOKUJTMqZYiwV07XyO87gyl6gYpW3yHvycBG5Yz713jxNykeO9a-8JsEQ2S8ma7r1kFMpeZRAKp5tcc3BTxSqusFiiQZJUtOeCsmaFKNj8yR951fgvx8SZIHm6zFJKmXALdbh0eqf4F3AMXkX43IR_BLZQW_1O3zBIlUYnD1D7K5QTidtglxwZxtVFZw9GlDfAG5dU-y-Lo46m0nLquHyrYH53SbOzipWSnn_RMBUslmHWTa3i8k9x7-wUO_DWuw0o-nGQf6STQio8z5QDYMhCOgvCMM5EyvZp7fXA2u0EFilFeYiiqy371dA99NysTfXpiRonbWq2FCELhZeNTLQtkmc2EEEBtlnb6yB80FjO-zUhzAUTkyfuU7IPAhuqHzhYRYp96U5DKKOXfZfIc8VbGvy9elRIz95AhPoRMAaPwg1h0aVY0-hxsVVn9UzM9xvj2BbxiG2LVaKQyzMA_J5Q3VAud3cEEJayZ-XPO39lxZ7Wk72GYAv3WRFx0oYD57Vw2AtrnCHtUvSYr9E5Q0SjQvxqZG8zvdnsQh_kuOqIyOarrBUo0wbjwK8H3jWXfac_EMkqhTLMlZMU1mE38M2CYPl7CP_hbZWhF2VzxzzEq6N-FR3XqcC5eK4jDhzT3iPS3zo98sIsfjQzBkMC3_UWBVPjTAsY1foAEmzkzqX-bjy_AIoYW7A1KqjzSYqmI6DWKYtHy6ZyeIpXwSbagNN6BXFLMEidYUced5h-8f9XVVYC88P4fjYaAfI32CTv_CKKIhwjxSiCVu0lkIOEEUwlwrSnU1hQjzNMQNtX-7vLm7C5EeONTv_1ESK3E4zyvxN2zgyu_Pk5i1m37mGW0FkWo9jsPh-cvQZvpUzrDYs37-QXwvr_xBK3UEFi67BHhcGg=",[782],{"_46":783,"_93":523},"**Considering code updates and checks**\n\nI’m thinking about running `git diff --check` to check for issues and possibly running `npm run format:check` as well. I want to avoid any provider-related issues. It's essential to verify that it stays cheap and safe offline through per agent methods. But after merging, there are huge changes, which might get a bit lengthy. I’m also considering running checks on runtime just to be thorough.",{"_496":785,"_477":478,"_498":484},{"_499":786,"_42":787,"_518":788,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251fafd68819388c3cf8e7d495174",[783],{"_496":790,"_477":478,"_498":484},{"_531":791,"_42":-5,"_502":-5,"_533":792,"_93":535},"call_I6bqHhK1TGZH7dI7T06bjJEM","Chunk ID: bac0f4\nWall time: 0.0006 seconds\nProcess exited with code 0\nOriginal token count: 173\nOutput:\nM tests/rag-offline-answer.test.ts\nM tests/registry-corpus.test.ts\nM tests/registry-records-route.test.ts\nM tests/retrieval-owner-filter-guard.test.ts\nA tests/safe-buffer.test.ts\nM tests/search-interaction-route.test.ts\nA tests/search-navigation-context.test.ts\nM tests/search-scope.test.ts\nA tests/server-timing.test.ts\nM tests/smart-rag-api.test.ts\nM tests/source-text-sanitizer.test.ts\nA tests/sse-heartbeat.test.ts\nA tests/stubs/server-only.ts\nA tests/supabase-server.test.ts\nA tests/tsx-server-only-runner.test.ts\nM tests/ui-smoke.spec.ts\nM tests/ui-tools.spec.ts\nM tests/ui-universal-search.spec.ts\nM tests/worker-safe-logging.test.ts\nM vitest.config.mts\n## work\n",{"_496":794,"_477":478,"_498":484},{"_577":795,"_579":796,"_581":797,"_583":584,"_482":32,"_586":32,"_42":791,"_588":798,"_590":591,"_489":114,"_93":592},"M tests/rag-offline-answer.test.ts\nM tests/registry-corpus.test.ts\nM tests/registry-records-route.test.ts\nM tests/retrieval-owner-filter-guard.test.ts\nA tests/safe-buffer.test.ts\nM tests/search-interaction-route.test.ts\nA tests/search-navigation-context.test.ts\nM tests/search-scope.test.ts\nA tests/server-timing.test.ts\nM tests/smart-rag-api.test.ts\nM tests/source-text-sanitizer.test.ts\nA tests/sse-heartbeat.test.ts\nA tests/stubs/server-only.ts\nA tests/supabase-server.test.ts\nA tests/tsx-server-only-runner.test.ts\nM tests/ui-smoke.spec.ts\nM tests/ui-tools.spec.ts\nM tests/ui-universal-search.spec.ts\nM tests/worker-safe-logging.test.ts\nM vitest.config.mts\n## work\n","/bin/bash -lc 'git add src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts && git status --short | tail -20 && git status --porcelain=v1 -b | head -1'",[799],"9065",{"_579":800,"_93":595},"git add src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts && git status --short | tail -20 && git status --porcelain=v1 -b | head -1",{"_496":802,"_477":478,"_498":484},{"_539":803,"_531":791,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git add src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts && git status --short | tail -20 && git status --porcelain=v1 -b | head -1\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":805,"_477":478,"_498":484},{"_499":-5,"_516":806,"_42":-5,"_502":-5,"_518":807,"_93":520},"gAAAAABqUlH5hjubHCRHlaowiQeUMTy3GOeYNagATKKyVGjRRPSSPQcqQSp32xq1u70a7pjDH8HPbwcSQ8NrusiOipYiQDN_CtCWNLvYHl8sDWOGfizCNv1x9GuoJ2djmGAy8v_pCf7MOw9vpVpZOsw1MnSWdVI8P1Fkbvb4724YDAYRCTxCLrPHWYwB5vRefIq8NwWdATgxyALjZw7AEqWUNhtU7TSw2NFJk9YTctvjAFk08BPp3T3RDfLpcsVWUicPNdMgIRexAAYStSXDzY_XWvdeHsC6IiWvx74oh7gW0jzrirZvtSFP9P4uh4MPaaG6huPmFzHonLaPrEr11pjpo5FUVikEp4XrgWJCHSx_xkoxTiJjQdd07Z3P9ZAALShlYiL2Q_dgzVxDGHt30QgtEd2WQYRFzStHBAzZi9T-NFReyOcGtqTDmQM4mxsdPoi1ALgQ22mwAt36xdZRpy2sLi5DiNMXh34jsqY02MBzfyKLJDDISYXJYCj2gH23Ipl0fxHFY-JREmNiIaLb6S11-_LLHVLhbdkgeUxiPUttJT77ybNCoC0Krk6gPGWa4Jrf_kDgPEeSbpISPaBTGb1-p86eMgVfnvLYczKNc_Tabk_in8J1NkFIoh7PxbUV1y-h1F3hQTz4P5IRuMQXcaenQcFFAzRhbp5zuotD0ig49HC_nDquDuqZgbuoDZO9_jFTIYrenJQHc_p86ugSJgXqHbJPbvIZ1migNBQjn-1Y_dalyhU3kI41hDaBmAAbbnOySnqT85h4U7OSnzBwk5TPcCzWW9o83Fn_8rJTaRMEb6SsL820qtGEqbaSTJ5jPeUfrm49GRXo5gOB-H08Mj-GojYnFYLY3hHsIuurs0e2bCh7kIOonH21pNEOAYoh5_yx4Ykh9wQvhXtTIohWJuZrdVoCxurbg78Zz87FEufEgm4ioiIg0ntUH2_A6aBusltvm1cmR-w4z92d1R6hipSsDkWXoHYAQc_NqiGjn_nJ4D5Ahy14xUYY12vA-1_PwdL7hKIx_P_Vg4MQ-bs50NueRxhySy8oFNtYp8S69iYsAks0-FY1ne54sp47ncLiAawLOfaD9g8qu2F_zhNgjAsebaTO_tJVDWd6s1dvBwTnVexxJmRjyeTgUfR31L44Bi6OQCf-mpmppWe9h2fyuxjAIiwmssMZtTJLjlR63g_POtgR1xhCCeWEETBRraWekts3EgWxvkD9JDAPz4K_I29WcBUs5UJ75ALr0IXEhTN9lkuJnuW6fZ542Y9jlQyVF5Q0ev6Ri9N8DWfq78TC5Yz7Xx5wAMxSKQ==",[808],{"_46":809,"_93":523},"**Managing a git merge**\n\nI’ve staged many files from the base, which is fine since this merge commit includes those base changes as another parent. Now I need to add the resolved files using git add. After that, I'm considering whether I should run any tests. There are numerous changes from the base that aren't mine. Maybe I’ll run the verify:cheap package script, but it could take some time. First, I've got to add and check the status.",{"_496":811,"_477":478,"_498":484},{"_499":812,"_42":813,"_518":814,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251f670848193b461d8bdf364dfbc",[809],{"_496":816,"_477":478,"_498":484},{"_531":817,"_42":-5,"_502":-5,"_533":818,"_93":535},"call_QUs3FVoGsdDRb7J0IDez90oF","Chunk ID: c54843\nWall time: 0.0005 seconds\nProcess exited with code 0\nOriginal token count: 2861\nOutput:\nM .github/pull_request_template.md\nM .github/workflows/ci.yml\nM .github/workflows/codex-autofix-review-comments.yml\nM .github/workflows/sast.yml\nM .prettierignore\nM AGENTS.md\nM Dockerfile\nM docs/branch-review-ledger.md\nM docs/codebase-index.md\nM docs/database-drift-detection.md\nM docs/deployment-architecture.md\nM docs/operator-apply-july8-batch.md\nM docs/process-hardening.md\nM docs/rag-hybrid-findings-and-todo.md\nM docs/tenancy-defense-in-depth-review.md\nM next.config.ts\nM package-lock.json\nM package.json\nM playwright.config.ts\nA scripts/build-analyze.mjs\nA scripts/check-client-bundle-secrets.mjs\nM scripts/check-codex-autofix-workflow.mjs\nM scripts/check-github-action-pins.mjs\nM scripts/check-july8-live-batch.ts\nM scripts/check-retrieval-owner-migration.ts\nM scripts/check-type-scale.mjs\nA scripts/ci-change-scope.mjs\nM scripts/deployment-boot-smoke.mjs\nM scripts/dev-free-port.mjs\nA scripts/enable-server-only-stub.mjs\nM scripts/ensure-local-server.mjs\nA scripts/eval-rag-offline.mjs\nM scripts/guard-next-build.mjs\nD scripts/local-server-utils.mjs\nM scripts/playwright-base-url.ts\nA scripts/register-server-only.mjs\nM scripts/run-eval-safe.mjs\nM scripts/run-playwright.mjs\nA scripts/run-tsx.mjs\nM scripts/run-vitest.mjs\nA scripts/verify-pr-local.mjs\nM src/app/api/answer/route.ts\nM src/app/api/answer/stream/route.ts\nM src/app/api/differentials/[slug]/route.ts\nM src/app/api/differentials/presentations/[slug]/route.ts\nM src/app/api/differentials/route.ts\nM src/app/api/documents/[id]/table-facts/route.ts\nM src/app/api/documents/bulk/route.ts\nM src/app/api/ingestion/quality/route.ts\nM src/app/api/medications/[slug]/route.ts\nM src/app/api/registry/records/[slug]/route.ts\nM src/app/api/search/universal/route.ts\nM src/app/differentials/diagnoses/[slug]/page.tsx\nM src/app/differentials/presentations/[slug]/page.tsx\nM src/app/differentials/presentations/page.tsx\nM src/app/globals.css\nM src/components/ClinicalDashboard.tsx\nM src/components/DocumentViewer.tsx\nUU src/components/applications-launcher-page.tsx\nM src/components/clinical-dashboard/DocumentManagerPanel.tsx\nM src/components/clinical-dashboard/account-setup-dialog.tsx\nM src/components/clinical-dashboard/answer-content.tsx\nM src/components/clinical-dashboard/answer-follow-up-suggestions.tsx\nM src/components/clinical-dashboard/answer-result-surface.tsx\nM src/components/clinical-dashboard/answer-suggestion-chips.tsx\nA src/components/clinical-dashboard/clinical-output-helpers.tsx\nM src/components/clinical-dashboard/cross-mode-links.tsx\nA src/components/clinical-dashboard/dashboard-contracts.ts\nM src/components/clinical-dashboard/dashboard-nav.tsx\nM src/components/clinical-dashboard/differentials-home.tsx\nM src/components/clinical-dashboard/display-text.ts\nM src/components/clinical-dashboard/document-admin.tsx\nM src/components/clinical-dashboard/evidence-panels.tsx\nM src/components/clinical-dashboard/favourites-command-library-page.tsx\nM src/components/clinical-dashboard/favourites-prototype-data.ts\nM src/components/clinical-dashboard/global-mockup-search-shell.tsx\nM src/components/clinical-dashboard/master-search-header.tsx\nUU src/components/clinical-dashboard/medication-prescribing-workspace.tsx\nM src/components/clinical-dashboard/medication-record-page.tsx\nM src/components/clinical-dashboard/mode-action-popup.tsx\nM src/components/clinical-dashboard/output-panel.tsx\nM src/components/clinical-dashboard/search-utils.ts\nM src/components/clinical-dashboard/settings-dialog.tsx\nM src/components/clinical-dashboard/universal-search-command-surface.tsx\nM src/components/clinical-dashboard/use-differential-catalog.ts\nM src/components/clinical-dashboard/use-medication-catalog.ts\nM src/components/clinical-dashboard/use-saved-registry-favourites.ts\nM src/components/differentials/diagnosis-map-panel.tsx\nM src/components/differentials/differential-detail-page.tsx\nM src/components/differentials/differential-diagnosis-page-client.tsx\nM src/components/differentials/differential-presentation-actions.tsx\nM src/components/differentials/differential-presentation-workflow-page.tsx\nM src/components/differentials/differentials-home-page.tsx\nM src/components/forms/form-detail-page.tsx\nM src/components/forms/forms-search-results-page.tsx\nM src/components/master-document-flow-mockups.tsx\nUU src/components/mode-home-template.tsx\nM src/components/services/service-detail-page.tsx\nM src/components/source-overlay-redesign-mockups.tsx\nM src/components/tools-page-mockups/tools-page-mockup-page.tsx\nM src/components/ui-primitives.tsx\nA src/lib/answer-client-payload.ts\nM src/lib/api-rate-limit.ts\nM src/lib/app-modes.ts\nA src/lib/bounded-ttl-cache.ts\nM src/lib/citations.ts\nA src/lib/client-env.ts\nA src/lib/copy-to-clipboard.ts\nA src/lib/differential-detail.ts\nM src/lib/differential-seed.ts\nA src/lib/differentials-search-request.ts\nM src/lib/differentials.ts\nM src/lib/document-flow-routes.ts\nM src/lib/env.ts\nM src/lib/extractors/document.ts\nM src/lib/http.ts\nM src/lib/local-project-guard.ts\nA src/lib/local-server-utils.mjs\nM src/lib/medication-seed.ts\nM src/lib/medications.ts\nM src/lib/owner-scope.ts\nM src/lib/public-api-access.ts\nA src/lib/rag-answer-support.ts\nM src/lib/rag-answer-text.ts\nM src/lib/rag-cache.ts\nA src/lib/rag-contracts.ts\nM src/lib/rag-extractive-answer.ts\nA src/lib/rag-query-guard.ts\nM src/lib/rag-retrieval-variants.ts\nM src/lib/rag.ts\nM src/lib/registry-corpus.ts\nM src/lib/registry-seed.ts\nA src/lib/safe-buffer.ts\nM src/lib/saved-registry-storage.ts\nA src/lib/search-navigation-context.ts\nM src/lib/search-scope.ts\nA src/lib/server-timing.ts\nM src/lib/smart-rag-api.ts\nM src/lib/source-text-sanitizer.ts\nA src/lib/sse-heartbeat.ts\nM src/proxy.ts\nM supabase/drift-allowlist.json\nM supabase/drift-manifest.json\nA supabase/migrations/20260711000000_drop_redundant_registry_sources_record_index.sql\nM supabase/schema.sql\nA tests/answer-client-payload.test.ts\nM tests/api-rate-limit-fallback.test.ts\nM tests/api-validation-contract.test.ts\nM tests/app-modes.test.ts\nA tests/architecture-boundaries.test.ts\nA tests/auth-callback-route.test.ts\nA tests/bounded-ttl-cache.test.ts\nA tests/client-secret-surface.test.ts\nM tests/clinical-dashboard-merge-artifacts.test.ts\nM tests/clinical-dashboard-search-utils.test.ts\nA tests/codex-autofix-workflow.test.ts\nA tests/copy-to-clipboard.test.ts\nA tests/differential-detail.test.ts\nM tests/differentials-route.test.ts\nA tests/differentials-search-request.test.ts\nM tests/differentials.test.ts\nM tests/document-flow-routes.test.ts\nA tests/document-mutation-routes.test.ts\nA tests/extracted-document-validation.test.ts\nA tests/extractive-answer-formatting.test.ts\nA tests/http-error-response.test.ts\nA tests/local-server-utils.test.ts\nA tests/master-document-flow-date.test.ts\nM tests/medications-route.test.ts\nM tests/medications.test.ts\nM tests/owner-scope.test.ts\nM tests/private-access-routes.test.ts\nA tests/proxy-session-refresh.test.ts\nA tests/public-api-access.test.ts\nM tests/rag-answer-text.test.ts\nM tests/rag-offline-answer.test.ts\nM tests/registry-corpus.test.ts\nM tests/registry-records-route.test.ts\nM tests/retrieval-owner-filter-guard.test.ts\nA tests/safe-buffer.test.ts\nM tests/search-interaction-route.test.ts\nA tests/search-navigation-context.test.ts\nM tests/search-scope.test.ts\nA tests/server-timing.test.ts\nM tests/smart-rag-api.test.ts\nM tests/source-text-sanitizer.test.ts\nA tests/sse-heartbeat.test.ts\nA tests/stubs/server-only.ts\nA tests/supabase-server.test.ts\nA tests/tsx-server-only-runner.test.ts\nM tests/ui-smoke.spec.ts\nUU tests/ui-tools.spec.ts\nM tests/ui-universal-search.spec.ts\nM tests/worker-safe-logging.test.ts\nM vitest.config.mts\n src/components/applications-launcher-page.tsx | Unmerged\n src/components/applications-launcher-page.tsx | 8 +-\n .../medication-prescribing-workspace.tsx | Unmerged\n .../medication-prescribing-workspace.tsx | 328 +++++++++++++++------\n src/components/mode-home-template.tsx | Unmerged\n src/components/mode-home-template.tsx | 14 +-\n tests/ui-tools.spec.ts | Unmerged\n tests/ui-tools.spec.ts | 211 ++++++++++++-\n 4 files changed, 461 insertions(+), 100 deletions(-)\ndiff --cc src/components/applications-launcher-page.tsx\nindex 4043839,58e2fa7..0000000\n--- a/src/components/applications-launcher-page.tsx\n+++ b/src/components/applications-launcher-page.tsx\n@@@ -732,8 -733,10 +732,10 @@@ export function ApplicationsLauncherWor\n aria-labelledby=\"tools-home-title\"\n className={cn(\n \"mx-auto w-full max-w-[90rem] overflow-x-hidden px-4 pb-8 text-[color:var(--text)] sm:px-6 lg:px-8\",\n- \"pb-[calc(12rem+env(safe-area-inset-bottom))] sm:pb-8\",\n+ // The composer sits in the hero at every width, so phones only need a\n+ // small safe-area cushion rather than bottom-dock clearance.\n+ \"pb-[calc(2rem+env(safe-area-inset-bottom))] sm:pb-8\",\n - \"pt-7 sm:pt-10 lg:pt-14\",\n + \"pt-5 sm:pt-8 lg:pt-10\",\n className,\n )}\n >\ndiff --cc src/components/clinical-dashboard/medication-prescribing-workspace.tsx\nindex 2e5f38a,c02e3ce..0000000\n--- a/src/components/clinical-dashboard/medication-prescribing-workspace.tsx\n+++ b/src/components/clinical-dashboard/medication-prescribing-workspace.tsx\ndiff --cc src/components/mode-home-template.tsx\nindex a2e93e3,d6f88a1..0000000\n--- a/src/components/mode-home-template.tsx\n+++ b/src/components/mode-home-template.tsx\ndiff --cc tests/ui-tools.spec.ts\nindex 8f645a4,d7f3e92..0000000\n--- a/tests/ui-tools.spec.ts\n+++ b/tests/ui-tools.spec.ts\n@@@ -421,9 -461,10 +467,10 @@@ test.describe(\"Clinical KB tools launch\n for (const home of [\n { path: \"/?mode=answer\", testId: \"answer-empty-state\", heading: \"How can I help?\", headingLevel: 2 },\n { path: \"/services\", testId: \"services-home\", heading: \"Find a service\", headingLevel: 1 },\n - { path: \"/forms\", testId: \"forms-home\", heading: \"What do you need from forms?\", headingLevel: 1 },\n + { path: \"/forms\", testId: \"forms-home\", heading: \"Forms\", headingLevel: 1 },\n { path: \"/differentials\", testId: \"differentials-home\", heading: \"Differentials\", headingLevel: 1 },\n { path: \"/favourites\", testId: \"favourites-hub\", heading: \"Favourites command library\", headingLevel: 1 },\n+ { path: \"/applications\", testId: \"tools-home\", heading: \"Tools\", headingLevel: 1 },\n ] as const) {\n await gotoLauncher(page, home.path);\n await expect(page.getByTestId(home.testId)).toBeVisible();\n@@@ -561,8 -664,9 +670,9 @@@\n headingLevel: 2,\n },\n { path: \"/services\", testId: \"services-home\", heading: \"Find a service\", headingLevel: 1 },\n - { path: \"/forms\", testId: \"forms-home\", heading: \"What do you need from forms?\", headingLevel: 1 },\n + { path: \"/forms\", testId: \"forms-home\", heading: \"Forms\", headingLevel: 1 },\n { path: \"/differentials\", testId: \"differentials-home\", heading: \"Differentials\", headingLevel: 1 },\n+ { path: \"/applications\", testId: \"tools-home\", heading: \"Tools\", headingLevel: 1 },\n ] as const) {\n await gotoLauncher(page, home.path);\n await expect(page.getByTestId(home.testId)).toBeVisible();\n",{"_496":820,"_477":478,"_498":484},{"_577":821,"_579":822,"_581":823,"_583":584,"_482":32,"_586":32,"_42":817,"_588":824,"_590":591,"_489":114,"_93":592},"M .github/pull_request_template.md\nM .github/workflows/ci.yml\nM .github/workflows/codex-autofix-review-comments.yml\nM .github/workflows/sast.yml\nM .prettierignore\nM AGENTS.md\nM Dockerfile\nM docs/branch-review-ledger.md\nM docs/codebase-index.md\nM docs/database-drift-detection.md\nM docs/deployment-architecture.md\nM docs/operator-apply-july8-batch.md\nM docs/process-hardening.md\nM docs/rag-hybrid-findings-and-todo.md\nM docs/tenancy-defense-in-depth-review.md\nM next.config.ts\nM package-lock.json\nM package.json\nM playwright.config.ts\nA scripts/build-analyze.mjs\nA scripts/check-client-bundle-secrets.mjs\nM scripts/check-codex-autofix-workflow.mjs\nM scripts/check-github-action-pins.mjs\nM scripts/check-july8-live-batch.ts\nM scripts/check-retrieval-owner-migration.ts\nM scripts/check-type-scale.mjs\nA scripts/ci-change-scope.mjs\nM scripts/deployment-boot-smoke.mjs\nM scripts/dev-free-port.mjs\nA scripts/enable-server-only-stub.mjs\nM scripts/ensure-local-server.mjs\nA scripts/eval-rag-offline.mjs\nM scripts/guard-next-build.mjs\nD scripts/local-server-utils.mjs\nM scripts/playwright-base-url.ts\nA scripts/register-server-only.mjs\nM scripts/run-eval-safe.mjs\nM scripts/run-playwright.mjs\nA scripts/run-tsx.mjs\nM scripts/run-vitest.mjs\nA scripts/verify-pr-local.mjs\nM src/app/api/answer/route.ts\nM src/app/api/answer/stream/route.ts\nM src/app/api/differentials/[slug]/route.ts\nM src/app/api/differentials/presentations/[slug]/route.ts\nM src/app/api/differentials/route.ts\nM src/app/api/documents/[id]/table-facts/route.ts\nM src/app/api/documents/bulk/route.ts\nM src/app/api/ingestion/quality/route.ts\nM src/app/api/medications/[slug]/route.ts\nM src/app/api/registry/records/[slug]/route.ts\nM src/app/api/search/universal/route.ts\nM src/app/differentials/diagnoses/[slug]/page.tsx\nM src/app/differentials/presentations/[slug]/page.tsx\nM src/app/differentials/presentations/page.tsx\nM src/app/globals.css\nM src/components/ClinicalDashboard.tsx\nM src/components/DocumentViewer.tsx\nUU src/components/applications-launcher-page.tsx\nM src/components/clinical-dashboard/DocumentManagerPanel.tsx\nM src/components/clinical-dashboard/account-setup-dialog.tsx\nM src/components/clinical-dashboard/answer-content.tsx\nM src/components/clinical-dashboard/answer-follow-up-suggestions.tsx\nM src/components/clinical-dashboard/answer-result-surface.tsx\nM src/components/clinical-dashboard/answer-suggestion-chips.tsx\nA src/components/clinical-dashboard/clinical-output-helpers.tsx\nM src/components/clinical-dashboard/cross-mode-links.tsx\nA src/components/clinical-dashboard/dashboard-contracts.ts\nM src/components/clinical-dashboard/dashboard-nav.tsx\nM src/components/clinical-dashboard/differentials-home.tsx\nM src/components/clinical-dashboard/display-text.ts\nM src/components/clinical-dashboard/document-admin.tsx\nM src/components/clinical-dashboard/evidence-panels.tsx\nM src/components/clinical-dashboard/favourites-command-library-page.tsx\nM src/components/clinical-dashboard/favourites-prototype-data.ts\nM src/components/clinical-dashboard/global-mockup-search-shell.tsx\nM src/components/clinical-dashboard/master-search-header.tsx\nUU src/components/clinical-dashboard/medication-prescribing-workspace.tsx\nM src/components/clinical-dashboard/medication-record-page.tsx\nM src/components/clinical-dashboard/mode-action-popup.tsx\nM src/components/clinical-dashboard/output-panel.tsx\nM src/components/clinical-dashboard/search-utils.ts\nM src/components/clinical-dashboard/settings-dialog.tsx\nM src/components/clinical-dashboard/universal-search-command-surface.tsx\nM src/components/clinical-dashboard/use-differential-catalog.ts\nM src/components/clinical-dashboard/use-medication-catalog.ts\nM src/components/clinical-dashboard/use-saved-registry-favourites.ts\nM src/components/differentials/diagnosis-map-panel.tsx\nM src/components/differentials/differential-detail-page.tsx\nM src/components/differentials/differential-diagnosis-page-client.tsx\nM src/components/differentials/differential-presentation-actions.tsx\nM src/components/differentials/differential-presentation-workflow-page.tsx\nM src/components/differentials/differentials-home-page.tsx\nM src/components/forms/form-detail-page.tsx\nM src/components/forms/forms-search-results-page.tsx\nM src/components/master-document-flow-mockups.tsx\nUU src/components/mode-home-template.tsx\nM src/components/services/service-detail-page.tsx\nM src/components/source-overlay-redesign-mockups.tsx\nM src/components/tools-page-mockups/tools-page-mockup-page.tsx\nM src/components/ui-primitives.tsx\nA src/lib/answer-client-payload.ts\nM src/lib/api-rate-limit.ts\nM src/lib/app-modes.ts\nA src/lib/bounded-ttl-cache.ts\nM src/lib/citations.ts\nA src/lib/client-env.ts\nA src/lib/copy-to-clipboard.ts\nA src/lib/differential-detail.ts\nM src/lib/differential-seed.ts\nA src/lib/differentials-search-request.ts\nM src/lib/differentials.ts\nM src/lib/document-flow-routes.ts\nM src/lib/env.ts\nM src/lib/extractors/document.ts\nM src/lib/http.ts\nM src/lib/local-project-guard.ts\nA src/lib/local-server-utils.mjs\nM src/lib/medication-seed.ts\nM src/lib/medications.ts\nM src/lib/owner-scope.ts\nM src/lib/public-api-access.ts\nA src/lib/rag-answer-support.ts\nM src/lib/rag-answer-text.ts\nM src/lib/rag-cache.ts\nA src/lib/rag-contracts.ts\nM src/lib/rag-extractive-answer.ts\nA src/lib/rag-query-guard.ts\nM src/lib/rag-retrieval-variants.ts\nM src/lib/rag.ts\nM src/lib/registry-corpus.ts\nM src/lib/registry-seed.ts\nA src/lib/safe-buffer.ts\nM src/lib/saved-registry-storage.ts\nA src/lib/search-navigation-context.ts\nM src/lib/search-scope.ts\nA src/lib/server-timing.ts\nM src/lib/smart-rag-api.ts\nM src/lib/source-text-sanitizer.ts\nA src/lib/sse-heartbeat.ts\nM src/proxy.ts\nM supabase/drift-allowlist.json\nM supabase/drift-manifest.json\nA supabase/migrations/20260711000000_drop_redundant_registry_sources_record_index.sql\nM supabase/schema.sql\nA tests/answer-client-payload.test.ts\nM tests/api-rate-limit-fallback.test.ts\nM tests/api-validation-contract.test.ts\nM tests/app-modes.test.ts\nA tests/architecture-boundaries.test.ts\nA tests/auth-callback-route.test.ts\nA tests/bounded-ttl-cache.test.ts\nA tests/client-secret-surface.test.ts\nM tests/clinical-dashboard-merge-artifacts.test.ts\nM tests/clinical-dashboard-search-utils.test.ts\nA tests/codex-autofix-workflow.test.ts\nA tests/copy-to-clipboard.test.ts\nA tests/differential-detail.test.ts\nM tests/differentials-route.test.ts\nA tests/differentials-search-request.test.ts\nM tests/differentials.test.ts\nM tests/document-flow-routes.test.ts\nA tests/document-mutation-routes.test.ts\nA tests/extracted-document-validation.test.ts\nA tests/extractive-answer-formatting.test.ts\nA tests/http-error-response.test.ts\nA tests/local-server-utils.test.ts\nA tests/master-document-flow-date.test.ts\nM tests/medications-route.test.ts\nM tests/medications.test.ts\nM tests/owner-scope.test.ts\nM tests/private-access-routes.test.ts\nA tests/proxy-session-refresh.test.ts\nA tests/public-api-access.test.ts\nM tests/rag-answer-text.test.ts\nM tests/rag-offline-answer.test.ts\nM tests/registry-corpus.test.ts\nM tests/registry-records-route.test.ts\nM tests/retrieval-owner-filter-guard.test.ts\nA tests/safe-buffer.test.ts\nM tests/search-interaction-route.test.ts\nA tests/search-navigation-context.test.ts\nM tests/search-scope.test.ts\nA tests/server-timing.test.ts\nM tests/smart-rag-api.test.ts\nM tests/source-text-sanitizer.test.ts\nA tests/sse-heartbeat.test.ts\nA tests/stubs/server-only.ts\nA tests/supabase-server.test.ts\nA tests/tsx-server-only-runner.test.ts\nM tests/ui-smoke.spec.ts\nUU tests/ui-tools.spec.ts\nM tests/ui-universal-search.spec.ts\nM tests/worker-safe-logging.test.ts\nM vitest.config.mts\n src/components/applications-launcher-page.tsx | Unmerged\n src/components/applications-launcher-page.tsx | 8 +-\n .../medication-prescribing-workspace.tsx | Unmerged\n .../medication-prescribing-workspace.tsx | 328 +++++++++++++++------\n src/components/mode-home-template.tsx | Unmerged\n src/components/mode-home-template.tsx | 14 +-\n tests/ui-tools.spec.ts | Unmerged\n tests/ui-tools.spec.ts | 211 ++++++++++++-\n 4 files changed, 461 insertions(+), 100 deletions(-)\ndiff --cc src/components/applications-launcher-page.tsx\nindex 4043839,58e2fa7..0000000\n--- a/src/components/applications-launcher-page.tsx\n+++ b/src/components/applications-launcher-page.tsx\n@@@ -732,8 -733,10 +732,10 @@@ export function ApplicationsLauncherWor\n aria-labelledby=\"tools-home-title\"\n className={cn(\n \"mx-auto w-full max-w-[90rem] overflow-x-hidden px-4 pb-8 text-[color:var(--text)] sm:px-6 lg:px-8\",\n- \"pb-[calc(12rem+env(safe-area-inset-bottom))] sm:pb-8\",\n+ // The composer sits in the hero at every width, so phones only need a\n+ // small safe-area cushion rather than bottom-dock clearance.\n+ \"pb-[calc(2rem+env(safe-area-inset-bottom))] sm:pb-8\",\n - \"pt-7 sm:pt-10 lg:pt-14\",\n + \"pt-5 sm:pt-8 lg:pt-10\",\n className,\n )}\n >\ndiff --cc src/components/clinical-dashboard/medication-prescribing-workspace.tsx\nindex 2e5f38a,c02e3ce..0000000\n--- a/src/components/clinical-dashboard/medication-prescribing-workspace.tsx\n+++ b/src/components/clinical-dashboard/medication-prescribing-workspace.tsx\ndiff --cc src/components/mode-home-template.tsx\nindex a2e93e3,d6f88a1..0000000\n--- a/src/components/mode-home-template.tsx\n+++ b/src/components/mode-home-template.tsx\ndiff --cc tests/ui-tools.spec.ts\nindex 8f645a4,d7f3e92..0000000\n--- a/tests/ui-tools.spec.ts\n+++ b/tests/ui-tools.spec.ts\n@@@ -421,9 -461,10 +467,10 @@@ test.describe(\"Clinical KB tools launch\n for (const home of [\n { path: \"/?mode=answer\", testId: \"answer-empty-state\", heading: \"How can I help?\", headingLevel: 2 },\n { path: \"/services\", testId: \"services-home\", heading: \"Find a service\", headingLevel: 1 },\n - { path: \"/forms\", testId: \"forms-home\", heading: \"What do you need from forms?\", headingLevel: 1 },\n + { path: \"/forms\", testId: \"forms-home\", heading: \"Forms\", headingLevel: 1 },\n { path: \"/differentials\", testId: \"differentials-home\", heading: \"Differentials\", headingLevel: 1 },\n { path: \"/favourites\", testId: \"favourites-hub\", heading: \"Favourites command library\", headingLevel: 1 },\n+ { path: \"/applications\", testId: \"tools-home\", heading: \"Tools\", headingLevel: 1 },\n ] as const) {\n await gotoLauncher(page, home.path);\n await expect(page.getByTestId(home.testId)).toBeVisible();\n@@@ -561,8 -664,9 +670,9 @@@\n headingLevel: 2,\n },\n { path: \"/services\", testId: \"services-home\", heading: \"Find a service\", headingLevel: 1 },\n - { path: \"/forms\", testId: \"forms-home\", heading: \"What do you need from forms?\", headingLevel: 1 },\n + { path: \"/forms\", testId: \"forms-home\", heading: \"Forms\", headingLevel: 1 },\n { path: \"/differentials\", testId: \"differentials-home\", heading: \"Differentials\", headingLevel: 1 },\n+ { path: \"/applications\", testId: \"tools-home\", heading: \"Tools\", headingLevel: 1 },\n ] as const) {\n await gotoLauncher(page, home.path);\n await expect(page.getByTestId(home.testId)).toBeVisible();\n","/bin/bash -lc \"git status --short && git diff --stat && git diff -- src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts | sed -n '1,240p'\"",[825],"32812",{"_579":826,"_93":595},"git status --short && git diff --stat && git diff -- src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts | sed -n '1,240p'",{"_496":828,"_477":478,"_498":484},{"_539":829,"_531":817,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git status --short && git diff --stat && git diff -- src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts | sed -n '1,240p'\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":30000}",{"_496":831,"_477":478,"_498":484},{"_499":-5,"_516":832,"_42":-5,"_502":-5,"_518":833,"_93":520},"gAAAAABqUlHz2fyYQh3LIOmOJRgkpyPRxliMF3_2wxcW7jXTjBzfJYiXeT3xip1F3c7zqWkupth8XCaG4wrBC0BF2LFJf1elhON0uVVA08F5LcONQ0ebFj2i4GccmIS0mSPcovEXQqE4KOG-2FXUFGEUkOx6RmUJ2rXLTD1CK13kh0gPLPgDjrNoSsTOCOaDKuufN7Q2Pk05zKxDHPhF8OSkzysNBy4BW-2dwN5JR0NT5Z2Z_2LtPFNbJMeEXlVtpb6vWoc5RPkxpL4CwixBu3S3B-oJp5ba4mHfWaV7NrbZS8SB8dO5-ykgU-pNIvmSdiQ-Pyrn2CHN_c_0tfOVrPaKWQ-VGWL2A-fkBZqWoo_GuG9f01CZWvmqwd75VSU1Sh3TBbFWqS4B88HmWUiOxdMW6pV86NEFmD-5rn_WaoquDp7ffpPxr6K8Kn4xoCAf_x3rquxgA65YxtSGio_aSzgPvdwBx3Bpn_htkj9zqHjL1ZiAI_EW0CP6RR5Rv6Gs-hzNDKOMyl0JxEHGnv-W88bn9vdye46e1xuddgqYbkFEIGO7e2mYWuG3Gbdq5knojFyDkb3aD2M_l02-MQXKu2Mqd7-FNMz2ga4AHnFLiEpfFb1h5mLWdfvexdLQGexZF7xUaKTugy631GeJaEnf_nIxW3bRr_6TAeOnaMKolGTsF0-dFbJyCwlnVqLuSbTvoWo9Zr5gDKw0ylYHHsMkCEifBx9LppSLckdr9YRj3PS3qYacCc7CTDW9OC1_Af0rfwrqgfcM8rtmVDObQJc-vgELaD_9iSt79o6eEEKKydiJ1wCyUuEPDXTg9ujBLSVrTu9At-OcGs_dIXHV84GkL6tojZ5lA7ZHjSTyyF7hnfjw1O-mqnpUZooNeWN2dRkNy_Rfx7s6Bz6Ok6Tc3oHc5kZmgvG9BhdxAOTmkiAiPEruZSyJI7kkhS3TTkvF_9_lkwAcqMFa4V1D",[],{"_496":835,"_477":478,"_498":484},{"_499":836,"_42":837,"_518":838,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251f332808193ad4893372a1dcf79",[],{"_496":840,"_477":478,"_498":484},{"_577":-5,"_579":841,"_581":842,"_583":584,"_482":843,"_586":32,"_42":844,"_588":845,"_590":591,"_489":114,"_93":592},"/bin/bash -lc \"python - <<'PY'\nfrom pathlib import Path\n# manual replacements\np=Path('src/components/applications-launcher-page.tsx')\ns=p.read_text()\ns=s.replace('''<<<<<<< HEAD\\\\n \\\"pb-[calc(12rem+env(safe-area-inset-bottom))] sm:pb-8\\\",\\\\n \\\"pt-5 sm:pt-8 lg:pt-10\\\",\\\\n=======\\\\n // The composer sits in the hero at every width, so phones only need a\\\\n // small safe-area cushion rather than bottom-dock clearance.\\\\n \\\"pb-[calc(2rem+env(safe-area-inset-bottom))] sm:pb-8\\\",\\\\n \\\"pt-7 sm:pt-10 lg:pt-14\\\",\\\\n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\\\n''',''' // The composer sits in the hero at every width, so phones only need a\\\\n // small safe-area cushion rather than bottom-dock clearance.\\\\n \\\"pb-[calc(2rem+env(safe-area-inset-bottom))] sm:pb-8\\\",\\\\n \\\"pt-5 sm:pt-8 lg:pt-10\\\",\\\\n''')\np.write_text(s)\n\np=Path('src/components/clinical-dashboard/medication-prescribing-workspace.tsx')\ns=p.read_text().replace('''<<<<<<< HEAD\\\\n description: \\\"Prescribing-focused search.\\\",\\\\n=======\\\\n description: prompt.description,\\\\n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\\\n''',''' description: \\\"Prescribing-focused search.\\\",\\\\n''')\np.write_text(s)\n\np=Path('src/components/mode-home-template.tsx')\ns=p.read_text()\n# choose HEAD for all conflict blocks in this file\nimport re\ns=re.sub(r'<<<<<<< HEAD\\\\n(.*?)=======\\\\n.*?>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\\\n', lambda m: m.group(1), s, flags=re.S)\np.write_text(s)\n\np=Path('tests/ui-tools.spec.ts')\ns=p.read_text()\ns=re.sub(r'<<<<<<< HEAD\\\\n(.*?)=======\\\\n.*?>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\\\n', lambda m: m.group(1), s, flags=re.S)\np.write_text(s)\nPY\nrg -n '<<<<<<<|=======|>>>>>>>' src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts || true\ngit diff --check\"",[846],527,"call_9tvJBDAtNAihMrAXgbROXUNl","40185",{"_579":847,"_93":595},"python - <<'PY'\nfrom pathlib import Path\n# manual replacements\np=Path('src/components/applications-launcher-page.tsx')\ns=p.read_text()\ns=s.replace('''<<<<<<< HEAD\\n \"pb-[calc(12rem+env(safe-area-inset-bottom))] sm:pb-8\",\\n \"pt-5 sm:pt-8 lg:pt-10\",\\n=======\\n // The composer sits in the hero at every width, so phones only need a\\n // small safe-area cushion rather than bottom-dock clearance.\\n \"pb-[calc(2rem+env(safe-area-inset-bottom))] sm:pb-8\",\\n \"pt-7 sm:pt-10 lg:pt-14\",\\n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\n''',''' // The composer sits in the hero at every width, so phones only need a\\n // small safe-area cushion rather than bottom-dock clearance.\\n \"pb-[calc(2rem+env(safe-area-inset-bottom))] sm:pb-8\",\\n \"pt-5 sm:pt-8 lg:pt-10\",\\n''')\np.write_text(s)\n\np=Path('src/components/clinical-dashboard/medication-prescribing-workspace.tsx')\ns=p.read_text().replace('''<<<<<<< HEAD\\n description: \"Prescribing-focused search.\",\\n=======\\n description: prompt.description,\\n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\n''',''' description: \"Prescribing-focused search.\",\\n''')\np.write_text(s)\n\np=Path('src/components/mode-home-template.tsx')\ns=p.read_text()\n# choose HEAD for all conflict blocks in this file\nimport re\ns=re.sub(r'<<<<<<< HEAD\\n(.*?)=======\\n.*?>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\n', lambda m: m.group(1), s, flags=re.S)\np.write_text(s)\n\np=Path('tests/ui-tools.spec.ts')\ns=p.read_text()\ns=re.sub(r'<<<<<<< HEAD\\n(.*?)=======\\n.*?>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\n', lambda m: m.group(1), s, flags=re.S)\np.write_text(s)\nPY\nrg -n '<<<<<<<|=======|>>>>>>>' src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts || true\ngit diff --check",{"_496":849,"_477":478,"_498":484},{"_531":844,"_42":-5,"_502":-5,"_533":850,"_93":535},"Chunk ID: 71ddf8\nWall time: 0.4241 seconds\nProcess exited with code 0\nOriginal token count: 0\nOutput:\n",{"_496":852,"_477":478,"_498":484},{"_539":853,"_531":844,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"python - <<'PY'\\nfrom pathlib import Path\\n# manual replacements\\np=Path('src/components/applications-launcher-page.tsx')\\ns=p.read_text()\\ns=s.replace('''<<<<<<< HEAD\\\\n \\\"pb-[calc(12rem+env(safe-area-inset-bottom))] sm:pb-8\\\",\\\\n \\\"pt-5 sm:pt-8 lg:pt-10\\\",\\\\n=======\\\\n // The composer sits in the hero at every width, so phones only need a\\\\n // small safe-area cushion rather than bottom-dock clearance.\\\\n \\\"pb-[calc(2rem+env(safe-area-inset-bottom))] sm:pb-8\\\",\\\\n \\\"pt-7 sm:pt-10 lg:pt-14\\\",\\\\n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\\\n''',''' // The composer sits in the hero at every width, so phones only need a\\\\n // small safe-area cushion rather than bottom-dock clearance.\\\\n \\\"pb-[calc(2rem+env(safe-area-inset-bottom))] sm:pb-8\\\",\\\\n \\\"pt-5 sm:pt-8 lg:pt-10\\\",\\\\n''')\\np.write_text(s)\\n\\np=Path('src/components/clinical-dashboard/medication-prescribing-workspace.tsx')\\ns=p.read_text().replace('''<<<<<<< HEAD\\\\n description: \\\"Prescribing-focused search.\\\",\\\\n=======\\\\n description: prompt.description,\\\\n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\\\n''',''' description: \\\"Prescribing-focused search.\\\",\\\\n''')\\np.write_text(s)\\n\\np=Path('src/components/mode-home-template.tsx')\\ns=p.read_text()\\n# choose HEAD for all conflict blocks in this file\\nimport re\\ns=re.sub(r'<<<<<<< HEAD\\\\n(.*?)=======\\\\n.*?>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\\\n', lambda m: m.group(1), s, flags=re.S)\\np.write_text(s)\\n\\np=Path('tests/ui-tools.spec.ts')\\ns=p.read_text()\\ns=re.sub(r'<<<<<<< HEAD\\\\n(.*?)=======\\\\n.*?>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\\\\n', lambda m: m.group(1), s, flags=re.S)\\np.write_text(s)\\nPY\\nrg -n '<<<<<<<|=======|>>>>>>>' src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts || true\\ngit diff --check\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":20000}",{"_496":855,"_477":478,"_498":484},{"_499":-5,"_516":856,"_42":-5,"_502":-5,"_518":857,"_93":520},"gAAAAABqUlHoS_ittHCKLKKG5Ie3rMLa2jyLCbnvuJhg99g3kFuLusEx-jzXXNQH1P0QcmICsz6Q_-FJh6F51j38cEncWUD67e_wD8IzvrukCUc6YRsizrQbJVBotgZ2P2YFn5lg9mxYO5o0BJb89HlgnBB_bUsnKcN6MSIy5VxKVlqYUvSHkIGGTnOYAeUPmLYJ71e5qXa9-Tp4cJkEIpAE76qq8rJL-phXAKeuXaiC4i5tvZWputzEscQp6I0W3amxCHy_C59e0nfk-pBv5V22kxssghoVQNzewivwnWCmnXYMamkh-3Mp0L2B11dAudOytd56RNHg4P2HTmF34BhqYEYlJXnv8uC1C52nvqzEBa9V4zVuY73J-W1xB8a0RJ5b72zjiWG6gvEI4Gn5QROge-EVwmpomK7N-laYT7BK47eChY4uvyt2kI3pC2wDguc4BP3jwCUxgcpvqH-TQJMNgYNF--sACqpagEssoTcnRdS6UjgGN6jdvzKC9_WUN-qzRcPbUGQYbN_wGF64HmPJXIaq0Jj-1RQ7bpqs7MKxx4Ke4tddphaGAlERSiORN-RYt-yQUJEjVP5KlwrbYVUGJ1O5LVii5lGH48qW_yOWNv2YJpOT4eUiyhnBgmVb0GTq1gKIUNDtE7db7BVIBfbeGL43zVNDpLONYr3TnmuMMcgw27owUkAvoGpLYWrffBOyisKj55czglcwDutxZ8nBTd_dv2bBxJoEwaNe5mpXO5B2XSf8hDBur6nFQmvQJrbW6sSuVBaCH6PPV8Y5iTrFRXxBD-QVhUZam_aeSdWBy2axEIG2BnY9nhNtgdQb80yAgJ2h9W2HP5ZxhRBaunw5q6Tfymno61k-SsNYdmpb7yT3JWNzY8pm4936DfnL97eFkM87nS2MZQXblSi04HRqdys6dcFTAJauyTlRQ476wPKe5qmIZQDrP4vGDD6qG-cOTqht8qa-SzfVIO80FjTlVxJnN8v4BNoha1ckjD_p7Zyo8tla2QWquAkZpW8aoGU9kLps7eqJuwDABRg6PBBsUprPF_7UmaZ5J5ZHX2_snE9mzTX1elBTG-w_35j0VAnDBDX0eYR1i7-II8Go4VoEZBj0uaV0OhzZfor2MdwVkSrdEwgC2I8DzsrQuVbmlQmdOhSVKd3IjengPfda3zIB-C9kFPcHbbROeCbrFf52jt4l6hg8gwfTh0549d4U_1dxyAn-t6HRS01egXC9643ZzmlAws6u5uA7dgogWiYSt8slzk4cRE0_8xpJ5Dbk-YSwouOSzWqnXoyOi5PIuZElJrFNC5oZ7BrjODBcJnhdXVUkyz7ijCz4rdJkUah2MI6mN4NQcPLHDtYUVll8_GYek3oCaIb4cIIpc0GFD36Ce9qdapQRqGiUYGJGnmWALcr8XsfonmH-Lt2TupicYPgARkvjXYq8aXtBYIXd3InpqkEtOHasOzBXtS9KAWhFGyDDsZjVRiehZqjVHXoiX1Edixx2dfNJZlSzBOz7KuhfhTuLx7x5_rav1WwAnI9TGwyCN1iHVxeNqk4vq3rfUT9AtxCSzLk98VxsfofKifltMNXnb3pMpjDx9XZ8b-ek36fcyK0qOVPAOU1ANnGf722n_ICs-rMRHd9ONILWMVJtHpTSudQ2azG6baGA2Ak8VCmtYFPgEOJ5JxYAGiVjthMDy-FhFOhoZGBAqcvhEwrfTi98h8htVSXqKbZHgjZurKuHZsJWwKfncrwwzvQBUXxbjTmWih9e06JHk7RPBddPrgauBp1iw9quFziMCMU0hXZr0lbLfcEOtejRgtUQPBc4WsFZZuAI025bfC11nhc6iwRmhWQtZyJEY_gAIP6p1XtdAM2Z7Ni4sqxHK4xTiwSFjQ9SDEYDvLRsMOhIDbnaJistV4mQQZcmnkWcQ-GJJQKBoA6HLFG0ujd85kB5C5Ij1tyEqp1QylA-s-pwVbVXh8oOn99M2AqJniZwzubO6_U4VmdXylYQm_Y9Tj7PcO64XuBQhyX2NzKhjNEenWhn-HVkqMPrXRyWtnToHQLsiLZvAE4Q-sTYW9coFCxRBSg2nfbWRQZUkplfA2dPNAnfxJv6be8bY0NdebxW1dkCsYQcmp0ePs3GSnWAmFJ24bVvbHqUsMjtPZ1cTIRyYvi0Onr65dTkqU91D0IvHOxd7IY5i-FcmL3AoOI-SBX5rdPiRQ1kWoJ2Uou8A_FPKr-ptP5pb-30gIK8fdUJk4rLS8OZwmNe7H2YN0XLTXvfOD2trdgNJa7uBjRxOHHSIBOy2pa-siibJNbDb54FFOK5sdaA4a0XiSIDYicrjnMND1VAgX-PL19BcNvfDOBrPWnEGiSuC4iOQ-pZUVpWiBsftKp5DUJvuaWrJc9603M_LpR-8NW5CaE7AxmXLstupHAV_VmXEMsatNMxQ0qwxCHHVqt9r_ayJ_R2w8sbintevqQkx68DiCQCZsl7nVLPY5jBTtsc_RB_jmPCvff7wQ22oYM9bceMWGOWKMEEiYWqc7hKxEB11tROHdn1DcwvREnZcTppx376NK_-9KX6thSeXTokqkI2qPe9nuXw0PJtBGRfGxL0y1jo_nLeXgHjEWCuVrbK5ntCJHx653u3RsFvVAL_qXmnIq7DNrpQgdk8OJomIyNkrVq4N5DyUwfQjjttv_opbLMuzkrXjyPZKPikykAl3sv7FZRoElAYuv6o8vIobVMOysUGnZbu9v5jm8t42i8kTJ7VyTRocDJPOE6Ecb0_rtN3EeXYwEG0Pp3wr2xnAnzzeMijpJG9l2KJMuV1bScLILv_aME12kNOKsjOldwOf2LURfRH0DU3td17CDxMFexQq9gA3WeU5BHyM3hlAlXmQ8Uzr0KBVcHGND0YumuQTFTftgIoWP8MFnP0zPN6llsmw2QGrW8rc-8vVFbIU9gpd7fstAWqxLGlF1dKnQSIBTrRpoOj",[],{"_496":859,"_477":478,"_498":484},{"_499":860,"_42":861,"_518":862,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251e035448193938504cc0a564e60",[],{"_496":864,"_477":478,"_498":484},{"_531":865,"_42":-5,"_502":-5,"_533":866,"_93":535},"call_Y21lSARAlSYRRauUtQOgfXv5","Chunk ID: a0a411\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 593\nOutput:\nsrc/components/applications-launcher-page.tsx\nsrc/components/clinical-dashboard/medication-prescribing-workspace.tsx\nsrc/components/mode-home-template.tsx\ntests/ui-tools.spec.ts\n\n return (\n \n \n \n \n void;\n}) {\n return (\n ({\n title: prompt.label,\n description: prompt.description,\n icon: prompt.icon,\n onClick: () => onSuggestedSearch(prompt.label),\n disabled: loading,\n testId: `medication-prompt-${prompt.label.split(\" \")[0]}`,\n }))}\n pillsTitle=\"Medication checks\"\n pills={medicationCapabilities.map((item) => ({\n label: item.label,\n",{"_496":868,"_477":478,"_498":484},{"_577":869,"_579":870,"_581":871,"_583":584,"_482":32,"_586":32,"_42":865,"_588":872,"_590":591,"_489":114,"_93":592},"src/components/applications-launcher-page.tsx\nsrc/components/clinical-dashboard/medication-prescribing-workspace.tsx\nsrc/components/mode-home-template.tsx\ntests/ui-tools.spec.ts\n\n return (\n \n \n \n \n void;\n}) {\n return (\n ({\n title: prompt.label,\n description: prompt.description,\n icon: prompt.icon,\n onClick: () => onSuggestedSearch(prompt.label),\n disabled: loading,\n testId: `medication-prompt-${prompt.label.split(\" \")[0]}`,\n }))}\n pillsTitle=\"Medication checks\"\n pills={medicationCapabilities.map((item) => ({\n label: item.label,\n","/bin/bash -lc 'for f in src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts; do echo $f; git show :2:$f | sed -n '\"'1,5p' >/dev/null; done\n# show relevant versions snippets\ngit show :2:src/components/applications-launcher-page.tsx | sed -n '728,746p'; echo INCOMING; git show :3:src/components/applications-launcher-page.tsx | sed -n '728,748p'\necho MED; git show :2:src/components/clinical-dashboard/medication-prescribing-workspace.tsx | sed -n '204,216p'; echo IN; git show :3:src/components/clinical-dashboard/medication-prescribing-workspace.tsx | sed -n '204,218p'\"",[873],"50835",{"_579":874,"_93":595},"for f in src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts; do echo $f; git show :2:$f | sed -n '1,5p' >/dev/null; done\n# show relevant versions snippets\ngit show :2:src/components/applications-launcher-page.tsx | sed -n '728,746p'; echo INCOMING; git show :3:src/components/applications-launcher-page.tsx | sed -n '728,748p'\necho MED; git show :2:src/components/clinical-dashboard/medication-prescribing-workspace.tsx | sed -n '204,216p'; echo IN; git show :3:src/components/clinical-dashboard/medication-prescribing-workspace.tsx | sed -n '204,218p'",{"_496":876,"_477":478,"_498":484},{"_539":877,"_531":865,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"for f in src/components/applications-launcher-page.tsx src/components/clinical-dashboard/medication-prescribing-workspace.tsx src/components/mode-home-template.tsx tests/ui-tools.spec.ts; do echo $f; git show :2:$f | sed -n '1,5p' >/dev/null; done\\n# show relevant versions snippets\\ngit show :2:src/components/applications-launcher-page.tsx | sed -n '728,746p'; echo INCOMING; git show :3:src/components/applications-launcher-page.tsx | sed -n '728,748p'\\necho MED; git show :2:src/components/clinical-dashboard/medication-prescribing-workspace.tsx | sed -n '204,216p'; echo IN; git show :3:src/components/clinical-dashboard/medication-prescribing-workspace.tsx | sed -n '204,218p'\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":879,"_477":478,"_498":484},{"_499":-5,"_516":880,"_42":-5,"_502":-5,"_518":881,"_93":520},"gAAAAABqUlHcGzRgrLx9ta_CggBUQlERT_SnQ73RuK-Vbe5vIwQu7lDcasyejsOeGy6M6qE2UhFge0MYY23Nlreb2kctD2ebohiP1H7mTHuJYdq6DZYbuic5IHfmu5399a1gig1_kEx8nRxEoo5rRuQzzro-oR8yNRs4yeVQaddDzR8Fsxys4zTUum-fcw9rK5DEvHCVJ1IWh2H8tL2e1RxBjrFJh_wY1Hy9dbRnZYjMVlZIGEKCtiZFC72OtFDjwt1jaKo1kVf01bLKxFszSq2b6OM6WpG-IZ2xPDJj6xPgsbqOZMCey2DKIsam5Turt0ZhKfcJT6wHJcVoCXsUpKKSQPlYBPYnSk9Ptdp7Rxzpu6DOS8N6vfHUwfpx3EmritO9d8Y2Wm_fnhIY4Tatgk1n2koVpTrG-28YJPFm45Eovh6Q-7XOP9KBOh7u7RBYqMM-3iNfcTnYDVtdLdDkNxMGiG8ZlDwcB6TjnZBT32CkeiLlMb-982nQ9DUZCCsmiW8dnHtUVn8AuADP9gZyrfL8BZrkIPy_SPwetkGeyjIL6C2g_9iTwTB78fmExdEhVoW2qU0VgmkCNGO8ptedy3l67Eul5olmK6SMc5_4gOPV-Qz6VDfUY66hlFk0xvQeSzXzzZPumW3U6RXD_7XGwR-6_kwT9r08FXRVV7MB7ijqVveR8EmvbIRA2AjRmcrQDtwWQWkj7UVca5bUIVBI04_qADDCzeAUndVmKVl-wckiUDzfCBjlbV1HWEEHx0J6p3csPMMwxDhLUW1ycsGx_KSddy6gkWJK4k1yYDrJ1geraml74YJFozMqVzyLIckxqTmm8qclFNYI4_Wqq0wAGuYevuhkrF2nNv9EDw1QTDMsWXrxs9FCo9u8HyBq-siQrNX77szURtVnJ3u_aI0oJZRuM8ymolG7uKxlvKuQOk0TbSiT31JrVK6MfKC_LqiSNRn9x2PueCuYqSyZ49DQaMGXHWkEbBzu9J59vJajch7MDpMiC8qnKfwLDT-1qkdgrxOmm2y2qD6QRzJ--8OLrLsPw1BoQ1hZuQatIB-99JMUIIE6ODxf4q7Vh7XhgYgKgM-gACAg0wSCIWPVwbOArihRZpE52qe5chDn6Eo2_l-M_-pfCUkfC1jNvGURHWVggpjcxc9jjItNtM8EwrzBTybqDUGSGxt9nNDN7LiNOF8a5dta3XdCf8yGQ3QkxJ0qemaMpbBSXa0SW88PFZ9O9xi9_U7kgQkXEw==",[882],{"_46":883,"_93":523},"**Resolving merge conflicts**\n\nI need to keep the PR changes alongside the base changes. I'm thinking there might be a conflict since the base is older. Actually, I'm merging the base reference into the PR branch, and the HEAD represents the compact version of the PR. The incoming base may have edge-to-edge changes. So, I’ll need to inspect the three versions using `git show :1 :2 :3` to figure it all out. That sounds like a plan!",{"_496":885,"_477":478,"_498":484},{"_499":886,"_42":887,"_518":888,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251d9eae08193b67da69ad31715a8",[883],{"_496":890,"_477":478,"_498":484},{"_531":891,"_42":-5,"_502":-5,"_533":892,"_93":535},"call_IlEXjq0aiDvbgLkILtYBl9ez","Chunk ID: 922311\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 3507\nOutput:\n }, [activeFilter, normalizedQuery]);\n\n const effectiveSelectedId = filteredApps.some((app) => app.id === selectedId)\n ? selectedId\n : (filteredApps[0]?.id ?? selectedId);\n const selectedApp = appById(effectiveSelectedId);\n // Label the panel by the selected tab's visible label (mobile-only tabs like\n // \"More\" included) so assistive tech hears a region name matching the tab.\n const activeFilterLabel =\n desktopFilters.find((filter) => filter.id === activeFilter)?.label ??\n mobileFilters.find((filter) => filter.id === activeFilter)?.label;\n const resultsPanelLabel =\n activeFilterLabel && activeFilterLabel !== copy.allSectionLabel\n ? `${activeFilterLabel} tools`\n : copy.allSectionLabel;\n\n function updateQuery(nextQuery: string) {\n if (controlledQuery === undefined && !searchCommand) setLocalQuery(nextQuery);\n }\n\n function openTool(id: string) {\n setSelection({ queryKey: normalizedQuery, id });\n setDetailOpen(true);\n }\n\n function submitSearch() {\n if (filteredApps[0]) openTool(filteredApps[0].id);\n }\n\n return (\n >>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n className,\n )}\n >\n \n \n\nfunction MedicationHome({\n loading,\n realDataReady,\n authUnavailable,\n apiUnavailable,\n setupWarning,\n onSuggestedSearch,\n desktopComposerSlotId,\n}: Omit & { desktopComposerSlotId?: string }) {\n return (\n ({\n title: prompt.label,\n<<<<<<< HEAD\n description: \"Prescribing-focused search.\",\n=======\n description: prompt.description,\n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n icon: prompt.icon,\n onClick: () => onSuggestedSearch(prompt.label),\n disabled: loading,\n testId: `medication-prompt-${prompt.label.split(\" \")[0]}`,\n }))}\n pillsTitle=\"Medication checks\"\n pills={medicationCapabilities.map((item) => ({\n label: item.label,\n icon: item.icon,\n onClick: () => onSuggestedSearch(item.query),\n }))}\n compact = false,\n}: {\n testId?: string;\n title: string;\n subtitle: string;\n icon: LucideIcon;\n headingLevel?: 1 | 2;\n /**\n * Mobile-only tightening used by ModeHomeTemplate so short mode homes fit a\n * phone viewport without scrolling. All sm+/lg values are identical to the\n * default treatment, so tablet and desktop render exactly the same.\n */\n compact?: boolean;\n}) {\n const Heading = headingLevel === 1 ? \"h1\" : \"h2\";\n\n return (\n >>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n aria-labelledby={`${testId ?? \"mode-home\"}-title`}\n >\n \n \n \n

\n \n \n \n

\n >>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n )}\n >\n {title}\n \n >>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n compact ? \"leading-5\" : \"leading-6\",\n )}\n >\n {subtitle}\n

\n \n \n \n

\n >>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n )}\n >\n {title}\n \n >>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n compact ? \"leading-5\" : \"leading-6\",\n )}\n >\n {subtitle}\n

\n \n );\n}\n\n/**\n icon,\n actions,\n actionsLabel,\n desktopComposerSlotId,\n pillsTitle,\n pills,\n pillsAction,\n footer,\n className,\n headingLevel = 1,\n}: ModeHomeTemplateProps) {\n return (\n >>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n className,\n )}\n >\n \n\n {desktopComposerSlotId ? (\n \n ) : null}\n\n {actions?.length ? (\n >>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n >\n {actions.map((action, index) => {\n const ActionIcon = action.icon;\n const content = (\n <>\n \n \n \n \n<<<<<<< HEAD\n \n {action.title}\n \n \n=======\n \n {action.title}\n \n \n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n {action.description}\n \n \n \n \n );\n const actionClassName = cn(\n<<<<<<< HEAD\n \"mode-home-action group grid min-h-[4.4rem] w-full grid-cols-[2.5rem_minmax(0,1fr)_1.25rem] items-center gap-3 bg-[color:var(--surface)] px-4 py-3 text-left transition hover:bg-[color:var(--surface-subtle)] focus-visible:relative focus-visible:z-10 focus-visible:outline focus-visible:outline-2 focus-visible:outline-offset-[-2px] focus-visible:outline-[color:var(--focus)] disabled:cursor-wait disabled:opacity-60 sm:min-h-[4.75rem] sm:grid-cols-[2.75rem_minmax(0,1fr)_1rem] sm:gap-3 sm:rounded-lg sm:border sm:border-[color:var(--border)] sm:px-4 sm:py-3.5 sm:shadow-[var(--shadow-card)] lg:min-h-[4.75rem] lg:px-5\",\n=======\n \"mode-home-action group grid min-h-[4.8rem] w-full grid-cols-[2.5rem_minmax(0,1fr)_1.25rem] items-center gap-3 bg-[color:var(--surface)] px-4 py-3 text-left transition hover:bg-[color:var(--surface-subtle)] focus-visible:relative focus-visible:z-10 focus-visible:outline focus-visible:outline-2 focus-visible:outline-offset-[-2px] focus-visible:outline-[color:var(--focus)] disabled:cursor-wait disabled:opacity-60 sm:min-h-[6.25rem] sm:grid-cols-[2.75rem_minmax(0,1fr)_1.25rem] sm:gap-3.5 sm:rounded-lg sm:border sm:border-[color:var(--border)] sm:px-4 sm:py-4 sm:shadow-[var(--shadow-card)] lg:px-5\",\n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n index > 0 && \"border-t border-[color:var(--border)] sm:border-t-[color:var(--border)]\",\n );\n\n if (action.href) {\n return (\n \n await gotoLauncher(page, home.path);\n const homeRegion = page.getByTestId(home.testId);\n await expect(homeRegion).toBeVisible();\n\n const icon = homeRegion.locator(\".mode-home-icon\").first();\n await expect(icon).toBeVisible();\n const iconBox = await icon.boundingBox();\n expect(iconBox, `${home.path} hero icon`).not.toBeNull();\n\n // ModeHomeHero gives its heading the deterministic id `-title`\n // (role/name lookups can collide with sr-only section headings).\n const heading = page.locator(`#${home.heroTestId}-title`);\n await expect(heading).toBeVisible();\n const headingFontSize = await heading.evaluate((el) => Number.parseFloat(getComputedStyle(el).fontSize));\n const subtitle = heading.locator(\"xpath=following-sibling::p[1]\");\n await expect(subtitle).toBeVisible();\n const subtitleFontSize = await subtitle.evaluate((el) => Number.parseFloat(getComputedStyle(el).fontSize));\n\n const metrics = {\n iconWidth: Math.round(iconBox?.width ?? 0),\n iconHeight: Math.round(iconBox?.height ?? 0),\n headingFontSize,\n subtitleFontSize,\n };\n if (!baseline) {\n baseline = metrics;\n<<<<<<< HEAD\n // Compact hero mobile scale: 2.75rem icon, 1.45rem heading, 0.875rem subtitle.\n expect(metrics.iconWidth).toBe(44);\n expect(metrics.iconHeight).toBe(44);\n expect(metrics.headingFontSize).toBeCloseTo(23.2, 1);\n=======\n // Compact hero mobile scale: 2.75rem icon, 1.5rem heading, 0.875rem subtitle.\n expect(metrics.iconWidth).toBe(44);\n expect(metrics.iconHeight).toBe(44);\n expect(metrics.headingFontSize).toBeCloseTo(24, 1);\n>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n expect(metrics.subtitleFontSize).toBeCloseTo(14, 1);\n } else {\n expect(metrics, `${home.path} hero metrics`).toEqual(baseline);\n }\n\n await expectNoPageHorizontalOverflow(page);\n }\n });\n\n test(\"phone bottom-dock search keeps the command popup hidden\", async ({ page }) => {\n await page.setViewportSize({ width: 390, height: 820 });\n await gotoLauncher(page, \"/services?q=13YARN&focus=1&run=1\");\n await expect(page.getByRole(\"button\", { name: \"Mode Services\" })).toBeVisible();\n const input = visibleGlobalSearchInput(page).first();\n","/bin/bash -lc \"sed -n '700,760p' src/components/applications-launcher-page.tsx; sed -n '190,225p' src/components/clinical-dashboard/medication-prescribing-workspace.tsx; sed -n '60,135p' src/components/mode-home-template.tsx; sed -n '230,310p' src/components/mode-home-template.tsx; sed -n '560,610p' tests/ui-tools.spec.ts\"",[899,900,901,902,903],"56828",{"_579":915,"_194":916,"_166":917,"_93":907},{"_579":912,"_194":913,"_166":914,"_93":907},{"_579":911,"_194":909,"_166":910,"_93":907},{"_579":908,"_194":909,"_166":910,"_93":907},{"_579":904,"_194":905,"_166":906,"_93":907},"sed -n '560,610p' tests/ui-tools.spec.ts","ui-tools.spec.ts","/workspace/Database/tests/ui-tools.spec.ts","read","sed -n '230,310p' src/components/mode-home-template.tsx","mode-home-template.tsx","/workspace/Database/src/components/mode-home-template.tsx","sed -n '60,135p' src/components/mode-home-template.tsx","sed -n '190,225p' src/components/clinical-dashboard/medication-prescribing-workspace.tsx","medication-prescribing-workspace.tsx","/workspace/Database/src/components/clinical-dashboard/medication-prescribing-workspace.tsx","sed -n '700,760p' src/components/applications-launcher-page.tsx","applications-launcher-page.tsx","/workspace/Database/src/components/applications-launcher-page.tsx",{"_496":919,"_477":478,"_498":484},{"_539":920,"_531":891,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"sed -n '700,760p' src/components/applications-launcher-page.tsx; sed -n '190,225p' src/components/clinical-dashboard/medication-prescribing-workspace.tsx; sed -n '60,135p' src/components/mode-home-template.tsx; sed -n '230,310p' src/components/mode-home-template.tsx; sed -n '560,610p' tests/ui-tools.spec.ts\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":20000}",{"_496":922,"_477":478,"_498":484},{"_531":923,"_42":-5,"_502":-5,"_533":924,"_93":535},"call_KhcCOeknJ4cgH5eg6QpbXOaZ","Chunk ID: 46b998\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 297\nOutput:\nsrc/components/applications-launcher-page.tsx\nsrc/components/clinical-dashboard/medication-prescribing-workspace.tsx\nsrc/components/mode-home-template.tsx\ntests/ui-tools.spec.ts\n--- src/components/applications-launcher-page.tsx\n735:<<<<<<< HEAD\n738:=======\n743:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n--- src/components/clinical-dashboard/medication-prescribing-workspace.tsx\n210:<<<<<<< HEAD\n212:=======\n214:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n--- src/components/mode-home-template.tsx\n78:<<<<<<< HEAD\n80:=======\n82:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n87:<<<<<<< HEAD\n100:=======\n113:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n120:<<<<<<< HEAD\n122:=======\n124:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n245:<<<<<<< HEAD\n247:=======\n249:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n265:<<<<<<< HEAD\n267:=======\n269:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n279:<<<<<<< HEAD\n284:=======\n289:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n300:<<<<<<< HEAD\n302:=======\n304:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n--- tests/ui-tools.spec.ts\n586:<<<<<<< HEAD\n591:=======\n596:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n",{"_496":926,"_477":478,"_498":484},{"_577":927,"_579":928,"_581":929,"_583":584,"_482":32,"_586":32,"_42":923,"_588":930,"_590":591,"_489":114,"_93":592},"src/components/applications-launcher-page.tsx\nsrc/components/clinical-dashboard/medication-prescribing-workspace.tsx\nsrc/components/mode-home-template.tsx\ntests/ui-tools.spec.ts\n--- src/components/applications-launcher-page.tsx\n735:<<<<<<< HEAD\n738:=======\n743:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n--- src/components/clinical-dashboard/medication-prescribing-workspace.tsx\n210:<<<<<<< HEAD\n212:=======\n214:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n--- src/components/mode-home-template.tsx\n78:<<<<<<< HEAD\n80:=======\n82:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n87:<<<<<<< HEAD\n100:=======\n113:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n120:<<<<<<< HEAD\n122:=======\n124:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n245:<<<<<<< HEAD\n247:=======\n249:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n265:<<<<<<< HEAD\n267:=======\n269:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n279:<<<<<<< HEAD\n284:=======\n289:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n300:<<<<<<< HEAD\n302:=======\n304:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n--- tests/ui-tools.spec.ts\n586:<<<<<<< HEAD\n591:=======\n596:>>>>>>> 70ec6409a11a85e1678eb4b320519624673a94a0\n","/bin/bash -lc 'git diff --name-only --diff-filter=U && for f in $(git diff --name-only --diff-filter=U); do echo '\"'---' \"'$f; rg -n '\"'<<<<<<<|=======|>>>>>>>' \"'$f; done'",[931],"69025",{"_579":932,"_93":595},"git diff --name-only --diff-filter=U && for f in $(git diff --name-only --diff-filter=U); do echo '---' $f; rg -n '<<<<<<<|=======|>>>>>>>' $f; done",{"_496":934,"_477":478,"_498":484},{"_539":935,"_531":923,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git diff --name-only --diff-filter=U && for f in $(git diff --name-only --diff-filter=U); do echo '---' $f; rg -n '<<<<<<<|=======|>>>>>>>' $f; done\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":937,"_477":478,"_498":484},{"_499":-5,"_516":938,"_42":-5,"_502":-5,"_518":939,"_93":520},"gAAAAABqUlHRthEEy8BUOGP9W944CcSOK1WEB1hJRSvcu6QMdetSZNpe-v0N6s1TRLL_P-oooofO20bhD4MdWhZAVyl6tjeQzdK9UUM8CVSowOK4SFcDUR8BaBlWQxKoTvQZsSGV_EwSpp1CtUMJlNixnX3NxxCnayZuoZTBPHcK45jyD3hGIWIpxEgD0xV0d6OvYzfzHJ8BSySUBMPTdwhi_cnRqNJOaerPMl0CRsJ4-TRxSLXo9h9FPsAbcU9_ZxlORBcgidS1H4pLUcnzEfBAj9afPdk1F6aJfgbkZ2MgbrMhEmoDjRMBkafe23b_adMyVfstyW7FZ9ej5na60p30h2kpJSim_efdQhIKRnw-GsTvTQ-vJ2gKBbFEnT84QxtCQFZnlcoJXHHFB9uPSxIhOeNT7o2RQWTW7-qOQKJaoyicMb9X-evC7Kx5ESsMIeAx0y5RiKzsg_Xik0X1_ssC9r2rHWi-SORo6h7BAP8ioatN111KP_narsOkeDuzmC8Ti0kwafRfT9xAHjADZEUyQcgh9v9NBjFY9Xd7Qkmui4XA_C3OFbCHiiSjBsZ-KsxiHl0nGBl3Ab1cTbX3fGy50GBygBcg3D34ZUfBECzyRR4co-rYsCFystoYA68TOUCIN--ED4PLOfcipJt4pGvmeYUJNlRXixuEw0E_tutuaTKpKhtUkvtO4vT2H1H49CRNuuyCYZhoT7CawXDy2Mk-TejefdJP-6Tub2yATXeyk4YxFGbq1_YyHq1SfymCccIFOunb6a0LxUS-DQ2EAZKzZjFERAuOb1nU8dRmNlAJJGzUVhLp_AR6X4pu4sjm_GHpTGTGr6IKBmtpoQk3K8CS7n_-pQZM6j8YuJz7GboeG_lr5C6k7chchP1o_FjBZatZLmgx9mtGQhmZUZGMy-jX-eKmR9nYL9Wu5zzFRVmq6bf63Vzs2ti6gJDHPZ75ORPGouGPQnoI",[],{"_496":941,"_477":478,"_498":484},{"_499":942,"_42":943,"_518":944,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251d101288193829cb15558b54134",[],{"_496":946,"_477":478,"_498":484},{"_531":947,"_42":-5,"_502":-5,"_533":948,"_93":535},"call_lnQpc2APHD2b9aTjG31RLZHP","Chunk ID: 9e442b\nWall time: 0.0000 seconds\nProcess exited with code 1\nOriginal token count: 174\nOutput:\nAuto-merging src/components/applications-launcher-page.tsx\nCONFLICT (content): Merge conflict in src/components/applications-launcher-page.tsx\nAuto-merging src/components/clinical-dashboard/differentials-home.tsx\nAuto-merging src/components/clinical-dashboard/medication-prescribing-workspace.tsx\nCONFLICT (content): Merge conflict in src/components/clinical-dashboard/medication-prescribing-workspace.tsx\nAuto-merging src/components/mode-home-template.tsx\nCONFLICT (content): Merge conflict in src/components/mode-home-template.tsx\nAuto-merging tests/ui-tools.spec.ts\nCONFLICT (content): Merge conflict in tests/ui-tools.spec.ts\nAutomatic merge failed; fix conflicts and then commit the result.\n",{"_496":950,"_477":478,"_498":484},{"_577":951,"_579":952,"_581":953,"_583":584,"_482":32,"_586":341,"_42":947,"_588":954,"_590":591,"_489":705,"_93":592},"Auto-merging src/components/applications-launcher-page.tsx\nCONFLICT (content): Merge conflict in src/components/applications-launcher-page.tsx\nAuto-merging src/components/clinical-dashboard/differentials-home.tsx\nAuto-merging src/components/clinical-dashboard/medication-prescribing-workspace.tsx\nCONFLICT (content): Merge conflict in src/components/clinical-dashboard/medication-prescribing-workspace.tsx\nAuto-merging src/components/mode-home-template.tsx\nCONFLICT (content): Merge conflict in src/components/mode-home-template.tsx\nAuto-merging tests/ui-tools.spec.ts\nCONFLICT (content): Merge conflict in tests/ui-tools.spec.ts\nAutomatic merge failed; fix conflicts and then commit the result.\n","/bin/bash -lc 'git merge --no-edit 70ec6409a11a85e1678eb4b320519624673a94a0'",[955],"31933",{"_579":956,"_93":595},"git merge --no-edit 70ec6409a11a85e1678eb4b320519624673a94a0",{"_496":958,"_477":478,"_498":484},{"_539":959,"_531":947,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git merge --no-edit 70ec6409a11a85e1678eb4b320519624673a94a0\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":20000}",{"_496":961,"_477":478,"_498":484},{"_499":-5,"_516":962,"_42":-5,"_502":-5,"_518":963,"_93":520},"gAAAAABqUlHPvdS1ON0mfFbuCE44Ta2KBgfN6PPvnMvboIJQmn6yCyDamGSQTEj5kFkL09u6Sttwbq7O-8oKGzQC0jnRejtOAQXk6RHdKEu9wYOxbqqPvVqTSGUcge4kvgvJjdVY4T5NC2Uq29ZFn-LbjKIZ9aU4_1Nu6Mp4ra1wu15S5Y_J99jIOsx7Td0o0t4SJzR2jnnfSvVFiMxOo9pwMvz07OKajRuoclg_odRKvRqIKSWqwfKH-m0fLUprv-3XyDEigl_AD9cmPHej1Dne1E0NL29FQ0dxKJLO0-XF5W92fQTcL2VZJcjkIyPlLPqlJ8ZHmt2pwvk4mDEX5EBVoW1eiiQwwxRjWX4z6Znvd1F_l5OPLefp_Slk0rrG7Pf7Ibnf6zGTp5V91gJqru8yWQQMCSx5snd8LihWp__Gbw7Ht8CLHtxoN4vtxySQXCVKAKwAWPrFLUzjejSM0vjTF3JB4lyozzOlyQ2dSH4iYSFDoReYZGWdUlB7pgxx-qo57I5IORwycmfZgUglWr-5lYi1ocyUoL1tNf2TViURYpIdHLZVBkx_WJQPWwpJrMqWCqwhO0W57HnJjXX1tswGncgE1owbGVnHsyW7PeTg4sevf0p6tN50Rr38TRh9NXy3h27n6CZlD7KMSbHnbUGlEp7TK9KhTbx0f1Cbw6U0h5Kv1GHjE-uL_MDP_3XljwW0zE9jbGApHY2m-9OzwWzSxgTHxYiJsRDvITmY1aA5EV5pLD-Crs3n9vr3NJXFeQgz8224_VtlpEKVHKrXRJEwpTIs1oG6COkzpCBOVQeqOfRprK44ddB5tVoP-7XmJF1nXJhcEpalb9B0X5agzPgiOg8TKxOikJb45ChWza7pfvRqwjTeXIuT9IaLl_VRoinWkeYogZkFAEW2zpu-v_yCyzs1u2ZkyZd56ICaJNGjnz8YagIhT2m-vyKzZq6cU0RcX5ikQ-eYUKvDFCwncVED0FCOoJ5HN9UfqqmfW_CnQFOuNYX-CeOgyQjOZNrzpWR-1vweyrsBSKTuimaHrjRzjecpcFI0LYXvtZ1172omLr6MwTrkmfRW01s-pnjzxvmfbr6osKGUGYRSd3rnPlA92qNZYRL3PwWvW3dZJp_DNURfUTyDd6ou5qLQPUN1T46BIAh2M7IYw6LdXegp-SIjRjlEwTaqxKAnHOMvHXrmEWkrpwjrjUru--LkEvCJEvzwFrijeK7-SsEaOBIau3l6BuVi9GDzu2ff8GuONBxvTT-NNdV1b4k=",[964],{"_46":965,"_93":523},"**Resolving merge conflicts**\n\nI'm trying to understand if the PR branch is based on an older branch, and if the base reference matches the current base branch. There seem to be conflicts because the branch and the base have diverged. I might need to merge the base reference into the HEAD. Since there’s no remote, the commit object exists. Now, I'll need to resolve potential conflicts and consider making a backup of the branch before committing.",{"_496":967,"_477":478,"_498":484},{"_499":968,"_42":969,"_518":970,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251cc84248193a38fd2e2d5c40e0b",[965],{"_496":972,"_477":478,"_498":484},{"_531":973,"_42":-5,"_502":-5,"_533":974,"_93":535},"call_jsaOczv3W1u2NWzhSh0RbiND","Chunk ID: 140e58\nWall time: 0.0001 seconds\nProcess exited with code 0\nOriginal token count: 13\nOutput:\nancestor:1\n648abfa3f7c91395b5eeca543f70e0b6ea59e9e0\n",{"_496":976,"_477":478,"_498":484},{"_577":977,"_579":978,"_581":979,"_583":584,"_482":32,"_586":32,"_42":973,"_588":980,"_590":591,"_489":114,"_93":592},"ancestor:1\n648abfa3f7c91395b5eeca543f70e0b6ea59e9e0\n","/bin/bash -lc 'git merge-base --is-ancestor 70ec6409a11a85e1678eb4b320519624673a94a0 HEAD; echo ancestor:$? && git merge-base 70ec6409a11a85e1678eb4b320519624673a94a0 HEAD && git log --oneline --ancestry-path 70ec6409a..HEAD | head'",[981],"35847",{"_579":982,"_93":595},"git merge-base --is-ancestor 70ec6409a11a85e1678eb4b320519624673a94a0 HEAD; echo ancestor:$? && git merge-base 70ec6409a11a85e1678eb4b320519624673a94a0 HEAD && git log --oneline --ancestry-path 70ec6409a..HEAD | head",{"_496":984,"_477":478,"_498":484},{"_539":985,"_531":973,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git merge-base --is-ancestor 70ec6409a11a85e1678eb4b320519624673a94a0 HEAD; echo ancestor:$? && git merge-base 70ec6409a11a85e1678eb4b320519624673a94a0 HEAD && git log --oneline --ancestry-path 70ec6409a..HEAD | head\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":987,"_477":478,"_498":484},{"_499":-5,"_516":988,"_42":-5,"_502":-5,"_518":989,"_93":520},"gAAAAABqUlHI1HKI4fhMdkNfdiYBJbK6UJOJ2T0_e7_3JWIykrmtXpUJyUXeKBXszUH6mjXsA9dxynuMnWdvfnSgxnzdxqv-PFUljApwmekVWip-DhacvWTg7vLN2D0KMy5xCqzwvcjyM2J7EuTRoFWmxwEjqT-3iKqIiSFk0RKs-vhH19i8KBtTyUV9mKwALJb5_gzWr3Z9Raxy_BZha4N7Osa8EPvu9Mc1RFiOluL-MX6kgx5X7b7PkIFwcXTO_pr3Vo1Mt0taKPxYDa8O7jOW3EyeuLAbozIOM2NqDj9jrc3L4AAwCCXp-oPl4ydZT9qyaPX2w8KFmgohAmjRz14D-nDFueyFEU22Ca9xp2yvS_2Oywz6i_auIHYVW9v4uKJHxZWRA1egNMQZfR62_pAEeU6b7Fh3GcGjA1kqULX53u9AJFYT0Mj7N4pQVbyZA8hiZzfuQqGCu00w02aBZGHbxZeDKskLsaEaDmKJ8Spi3vno9l8ZN0zGck86C_fUSClSyqkpnzXnT__QfYLGLeXETd5E9851ALQ9awMHSdqkIFLTZB30o-dLJ_pk42bqnHUxK5IovcGMwZHoQhxKbbFxcSiixizkWTPn39syJip1swoZ6YUvRZLF_johqArAyMTsms3AMr_ICy0R-mGswHSXdBgAS--rP1YbKS12DUfxx6GnMhW1JZRC6-Ugt68XyiG6gBXBX7NSHvATmH1Q007068BB49SDIP9tedhj4wgpuR9kSq1A1Z7vc00Ih_8ncrWifNY521HfToJ1Gm2oY3hJcnhb_fa2XZ1SECyR3dVaWz90tLHAVC_AKeh2qv-njp5eOD2q3Nxvh0ovSPfqS4Ts1YzjT4M6JVirIF1WqupkwqYMrUdnvRLsJyKJ0bEobMrYJZl31No1QJGW8C2Xp_LTVuoh3FugKpqi6b-1Kx9sQLuw6ozhaENvBKO7_955RqO62bFihXdUABcYFvHPv9M0m2yz1ji0VPNJfc4MR_hqrJb8XpSpXrxX7Vg7_YQzVOdObdm3oYIlMJZJlSusr4s6k_O-AsMXjhO5a7Sptf0H5LjquqLm-rjc0zP0go-0gVdvORgJWTSh",[],{"_496":991,"_477":478,"_498":484},{"_499":992,"_42":993,"_518":994,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251c7ed6481938943377e31c35405",[],{"_496":996,"_477":478,"_498":484},{"_531":997,"_42":-5,"_502":-5,"_533":998,"_93":535},"call_6Tp4Kw1EIQt9mTTrIBGyV10Z","Chunk ID: a12f02\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 510\nOutput:\n* work 84fbecaeac54dbdf2ad7c3419c25583d60631240 refactor(ui): compact mode-home heroes, cards, and headings\n* 84fbeca (HEAD -> work) refactor(ui): compact mode-home heroes, cards, and headings\n* 648abfa docs: align readiness runtime version\n* 155c801 chore: clean readiness lint warnings (#453)\n* c35333a Codex/fix GitHub runners (#452)\n* 4ba3deb fix: require scoped Codex auto-resolve command (#447)\n* af72dbc fix: replace hardcoded POSTGRES_PASSWORD with runtime-generated random password (#451)\n* 3140d69 RAG routing hardening, registry corpus embedding, and review docs (#443)\n* 0cef103 Codex/archive obsolete branches 20260709 (#449)\n* 230ec3f ci: soft-skip Codex autoresolve permission errors (#445)\n* 4957fd2 Merge branch cleanup and review workflow updates (#446)\n* 54723c9 fix: throttle Codex auto-resolve workflow\n* ac5a6e1 fix(rag): preserve registry route metadata during normalization (#442)\n* b037757 Codex/pr430 publish (#441)\n* fd12874 docs: clarify required PR check setup (#440)\n* e6ab120 chore: database schema reconciliation and pipeline review updates (#433)\n* 4863d6c fix(ci): unblock deployment boot smoke and pace eval canary (#437)\n* 1665b50 PR 423 (#423)\n* 161cab9 Archive local main WIP 20260705\n* df98dd3 Add Codex review comment auto-resolve bridge (#435)\n* 49cbd22 Merge pull request #421 from BigSimmo/cursor/loose-ends-edge-to-edge-main-470d\n|\\ \n| * cb3ed0c fix: apply CodeRabbit auto-fixes\n| * 2c0d4fa fix: apply CodeRabbit auto-fixes (#432)\n| * 3c38323 fix: apply CodeRabbit auto-fixes\n| * c7120f1 fix(test): resolve failing mobile ui-tools launcher tests\n| * 0c38e45 fix(ui): wire phone scroll-hide and tests to #main-content\n| * 827206b fix(ui): align scroll-hide tests with edge-to-edge shell scrolling\n| * 640b28b fix(ui): restore mobile scroll container in GlobalSearchShell\n| * 546f91f style: run Prettier on edge-to-edge layout files for CI format:check\n| * 39d14a5 fix(ui): edge-to-edge mobile layout on main\n* | 4f4838a fix(ci): require RAG_QUERY_HASH_SECRET for deployment boot smoke (#429)\n",{"_496":1000,"_477":478,"_498":484},{"_577":1001,"_579":1002,"_581":1003,"_583":584,"_482":32,"_586":32,"_42":997,"_588":1004,"_590":591,"_489":114,"_93":592},"* work 84fbecaeac54dbdf2ad7c3419c25583d60631240 refactor(ui): compact mode-home heroes, cards, and headings\n* 84fbeca (HEAD -> work) refactor(ui): compact mode-home heroes, cards, and headings\n* 648abfa docs: align readiness runtime version\n* 155c801 chore: clean readiness lint warnings (#453)\n* c35333a Codex/fix GitHub runners (#452)\n* 4ba3deb fix: require scoped Codex auto-resolve command (#447)\n* af72dbc fix: replace hardcoded POSTGRES_PASSWORD with runtime-generated random password (#451)\n* 3140d69 RAG routing hardening, registry corpus embedding, and review docs (#443)\n* 0cef103 Codex/archive obsolete branches 20260709 (#449)\n* 230ec3f ci: soft-skip Codex autoresolve permission errors (#445)\n* 4957fd2 Merge branch cleanup and review workflow updates (#446)\n* 54723c9 fix: throttle Codex auto-resolve workflow\n* ac5a6e1 fix(rag): preserve registry route metadata during normalization (#442)\n* b037757 Codex/pr430 publish (#441)\n* fd12874 docs: clarify required PR check setup (#440)\n* e6ab120 chore: database schema reconciliation and pipeline review updates (#433)\n* 4863d6c fix(ci): unblock deployment boot smoke and pace eval canary (#437)\n* 1665b50 PR 423 (#423)\n* 161cab9 Archive local main WIP 20260705\n* df98dd3 Add Codex review comment auto-resolve bridge (#435)\n* 49cbd22 Merge pull request #421 from BigSimmo/cursor/loose-ends-edge-to-edge-main-470d\n|\\ \n| * cb3ed0c fix: apply CodeRabbit auto-fixes\n| * 2c0d4fa fix: apply CodeRabbit auto-fixes (#432)\n| * 3c38323 fix: apply CodeRabbit auto-fixes\n| * c7120f1 fix(test): resolve failing mobile ui-tools launcher tests\n| * 0c38e45 fix(ui): wire phone scroll-hide and tests to #main-content\n| * 827206b fix(ui): align scroll-hide tests with edge-to-edge shell scrolling\n| * 640b28b fix(ui): restore mobile scroll container in GlobalSearchShell\n| * 546f91f style: run Prettier on edge-to-edge layout files for CI format:check\n| * 39d14a5 fix(ui): edge-to-edge mobile layout on main\n* | 4f4838a fix(ci): require RAG_QUERY_HASH_SECRET for deployment boot smoke (#429)\n","/bin/bash -lc 'git branch --all --verbose --no-abbrev && git log --oneline --decorate --graph --all --max-count=30'",[1005],"46404",{"_579":1006,"_93":595},"git branch --all --verbose --no-abbrev && git log --oneline --decorate --graph --all --max-count=30",{"_496":1008,"_477":478,"_498":484},{"_539":1009,"_531":997,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git branch --all --verbose --no-abbrev && git log --oneline --decorate --graph --all --max-count=30\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":20000}",{"_496":1011,"_477":478,"_498":484},{"_499":-5,"_516":1012,"_42":-5,"_502":-5,"_518":1013,"_93":520},"gAAAAABqUlHFQLPouxZQO67NvUDzxTLSekH_cTCZlO3VZ0KCyc76nIrsyNYJihzy2VixNW5REhqHNuW7l0flGRu95TheUgXRAMcQbEfpIm76VmdIwwlay41BiDf3PyQEZqCrfPX4-OdGc7u9Xt8f5J782jFbhv9_fSfeMdcgOuyrfMXQ4QUv5Lz8OSKio11-qbnS1hmKlressLBZfBNU-rCq0pTZYVn2S2FhBPEECOQTjpGkQ2HXt7TFsCNH2PYZsGoVhcy0SnmE2lWy-3xJbeRAHCpXju28JI4RHNrwqmVVR4b1jZMjuK5p1GbAzqmik-l936XbC1u4xTn3ZOAL3SjtYO9UvMq_try9hsca11cNjMLGLZm4s50-f6flhxkt_onYerjfRk4CrqTNfb_O-mGlZDPrALIWrBxqJzQF36VO-xj4yl-sre1_Rwy8fuQlBNQH0taBQNWaB5lBRGz9EqolxwlgNzM8pi1pJvA4JU4JaJRzDoWYCNfW0KFbXLKptbkIYtKoVZgBlFHm9lX-oPTBOX6CaXAfppP-JAeDSUotOAYUwN0bQIig7H96byoiknf1hutBGRIDduEPSv1JN6k4NaEyrg0owrAe433pWD2VufzaNriSHsMPCwEXh1VpdmbG4dWZvvGYxK3RCjVcOyi3eMhtzBxQiXlalo9qe7s-a9FPJsKj7Q5Ojcc9d8mRoigLUMMzxnwy6M0VAqz7QDXxH3prlJZT8GxMvHbNAp_jUUq4QBmPtotDLoToxgxuXO05Ha3ktmfNSpYj0UrwT6uMDP9rElsLIcHV86AdsY64kLMTfbeQyBmcPupGq9-HL-iPOby9SUBmLdMZMq8MFmDGFWtpOXEqLUYf6k9h_c5hcaoLt5eoe6Uab8e67ifuWLfR3iGZGUAlUrprG5gfIbH1UcteWNfDhCP1OyQtPVN2zM7vEXYye45-tipENgB3YIR9yJTG4yjlZvDKKaUXsTtZbs2aPra4wIQTtViDAut0aCPL_6ejwfYa-GdUbcxVuaLIbStfpvBb",[],{"_496":1015,"_477":478,"_498":484},{"_499":1016,"_42":1017,"_518":1018,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251c4fbb48193933758d06c9437f6",[],{"_496":1020,"_477":478,"_498":484},{"_531":1021,"_42":-5,"_502":-5,"_533":1022,"_93":535},"call_IYavYJ3pmAPCfMgGoMtaMIWu","Chunk ID: e06706\nWall time: 0.0000 seconds\nProcess exited with code 0\nOriginal token count: 92\nOutput:\ncommit\n70ec640 Merge pull request #491 from BigSimmo/claude/supabase-postgres-practices-3eeeb0\n\n supabase/drift-manifest.json | 12 +++---------\n ...0_drop_redundant_registry_sources_record_index.sql | 19 +++++++++++++++++++\n supabase/schema.sql | 5 +++--\n 3 files changed, 25 insertions(+), 11 deletions(-)\n",{"_496":1024,"_477":478,"_498":484},{"_577":1025,"_579":1026,"_581":1027,"_583":584,"_482":32,"_586":32,"_42":1021,"_588":1028,"_590":591,"_489":114,"_93":592},"commit\n70ec640 Merge pull request #491 from BigSimmo/claude/supabase-postgres-practices-3eeeb0\n\n supabase/drift-manifest.json | 12 +++---------\n ...0_drop_redundant_registry_sources_record_index.sql | 19 +++++++++++++++++++\n supabase/schema.sql | 5 +++--\n 3 files changed, 25 insertions(+), 11 deletions(-)\n","/bin/bash -lc 'git cat-file -t 70ec6409a11a85e1678eb4b320519624673a94a0 && git branch --contains 70ec6409a11a85e1678eb4b320519624673a94a0 --all && git show --stat --oneline 70ec6409a11a85e1678eb4b320519624673a94a0'",[1029],"50385",{"_579":1030,"_93":595},"git cat-file -t 70ec6409a11a85e1678eb4b320519624673a94a0 && git branch --contains 70ec6409a11a85e1678eb4b320519624673a94a0 --all && git show --stat --oneline 70ec6409a11a85e1678eb4b320519624673a94a0",{"_496":1032,"_477":478,"_498":484},{"_539":1033,"_531":1021,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git cat-file -t 70ec6409a11a85e1678eb4b320519624673a94a0 && git branch --contains 70ec6409a11a85e1678eb4b320519624673a94a0 --all && git show --stat --oneline 70ec6409a11a85e1678eb4b320519624673a94a0\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":20000}",{"_496":1035,"_477":478,"_498":484},{"_499":-5,"_516":1036,"_42":-5,"_502":-5,"_518":1037,"_93":520},"gAAAAABqUlHCqzpbgyhq5lrUHx896-iPxtuPeFYOWDwh6MfQdlByg6E201VazcOyhe9QeOIewwrORsAcSUgatb1BtYHPc6X7yi1f6A9KZ8_AVqGyorUUHWl8Z6KmuEBNR3_bKwHXmOo8chOxB-t4UMkWKOfFLviI9bfEKwNfnJVWLbh5WQmC1Lf1h8FPi9QHrgKCSK3tvFRNLPOxmzTSTEbx9RSOKV7i7wkpoOv1ZBYPYUxMmSjL_R8lC4bzWLMR2CXx1S6vlhDDUzS1xdYtIjfSW52SxjDK64lJ5mNYh-JNETWdL0xACAXT5FypLA_GB6qF8k3AJ_QJP-ItGgN7ey1iaFkD5ZlEhlvJuM4lZsWF6JXCO1v1tyO8kkk0A0vw5HGvnGiY-wHh_vEDtUUBN9jDIMdYNueZCpVcck17HxeemKew2LxFjHMHx-d6HfiG_9rCGvVbCQHtuwxV_KtSk8bzC0a0EDDQ86W4oqS4CoU7UdSYHIO6KvOUBYky8LWJc7X8t6W8G0mkZTmpdmabR7Qb3s8-MldiuGD_uVPPYt2Qywv4gwQiRuztbxwT_X8dEky8WUXpGzIyAZLjrWGTFNlNgKRaWzEhD2FhlPDAvcsljY403S3X_r8bVOm1ggDoEjYeflxDBil02w37CKs1ycndM03GlMua19YObJDrEuHH62N_kuWXKqCw7YC3M2kmlLuGXGQiVfQkAuG1xc4PU5dUP2QeKhE_joB8OdDzIEThKxPcTnjmZ4rc4QiWI7L5Za4QBNRwqa-U6lXcSIJXYBXYRFNeGPSYTayQSMMc3Sd3VjvCG1rCT0QR6cqKePa8_wGM1kYqO6bO8pXOdOHq_RT3TnxeCUUNDlMDzKR4YfKJiZnqlCr8SzmSKYcbbarbjjhJhEk8ecyq1dPLV5UkeujjeLqnI7e0isynhiQKgIrVWB098i_fzZueFqUFAB6221PlI9KUDqTSV1pTCX6q4gxw1453KIlUfsSYXj9Q5cnBIEDsJaBNlZ77AXY7hRNM52wyfyZMSA4kSzTVc3B96M0vFvxCStGB5lxc4RHUalzAFg6qTO9V0cWZwP0JHkHGRPukTvgug77dCDKUJZ2lDsj6qWklJW54FCayEaM5vr9yD0j9U_pZMGVj9wm-ZdQx7fTWsvpYQH0mmWhsw-bWaWxtx2yawPt8bLO8bCtUdZPT524AJgdzYEE3MDKDusevEe9k3trYw8UqNCXYFJcGSlUKgYHTBfp0mON-13yIoCXQXRsh2q0ABDhqvjs3h85CmsQSXivZRaeMQoeE4YZxuNYNYHMJrIHxJm2FcxrwJUQmYGLnie8ZX7kr1vogobUFjlsbCboM3TXg",[1038],{"_46":1039,"_93":523},"**Resolving PR conflicts**\n\nI need to figure out the situation with the pull request (PR) because there's a conflict. The developer suggests committing the current branch and then making the PR, but the user is concerned about conflicts. Since I only have the local branch head and base SHA, it seems I might need to resolve conflicts by merging with the base. I could inspect the current repository to see if the base commit exists. I should check for conflicts with the main branch too!",{"_496":1041,"_477":478,"_498":484},{"_499":1042,"_42":1043,"_518":1044,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251c0026c8193a505d81b9ab50ed5",[1039],{"_496":1046,"_477":478,"_498":484},{"_531":1047,"_42":-5,"_502":-5,"_533":1048,"_93":535},"call_UHGswoDRyhbD38guuqQXtqLp","Chunk ID: 291fff\nWall time: 0.0000 seconds\nProcess exited with code 1\nOriginal token count: 21\nOutput:\n* work 84fbeca refactor(ui): compact mode-home heroes, cards, and headings\n## work\n",{"_496":1050,"_477":478,"_498":484},{"_577":1051,"_579":1052,"_581":1053,"_583":584,"_482":32,"_586":341,"_42":1047,"_588":1054,"_590":591,"_489":705,"_93":592},"* work 84fbeca refactor(ui): compact mode-home heroes, cards, and headings\n## work\n","/bin/bash -lc 'git remote -v || true && git branch -vv && git status --porcelain=v1 -b && git config --get branch.work.merge && git config --get branch.work.remote && git show-ref --heads -- remotes | head'",[1055],"60267",{"_579":1056,"_93":595},"git remote -v || true && git branch -vv && git status --porcelain=v1 -b && git config --get branch.work.merge && git config --get branch.work.remote && git show-ref --heads -- remotes | head",{"_496":1058,"_477":478,"_498":484},{"_539":1059,"_531":1047,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\":\"git remote -v || true && git branch -vv && git status --porcelain=v1 -b && git config --get branch.work.merge && git config --get branch.work.remote && git show-ref --heads -- remotes | head\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000}",{"_496":1061,"_477":478,"_498":484},{"_499":-5,"_516":1062,"_42":-5,"_502":-5,"_518":1063,"_93":520},"gAAAAABqUlG9gnHj_LmeqLXxJ5JLtm6eVOyn0KODtBa4NsW68w74rH0Y44xeZIdV2KOFzTtkY-kXwIKNIYVBJ_uNnfYruk5EtnruLlhz4hFswu2ihQti_ySnZXk50y_I1_P5Zyu9eE4wjAr6Mapy02tkdkBgwXbycAMz5KHUWOyTTor5QPI89boHeim0tLHDHye2CixDl7m87_67eEn-KzGZ8bwv1QYqke9EWK2sNCYiaTUsR_atazjZtqVht01QRPMr2CQ3Sx479SUIf2pLNp0PkHF-zMsCGTMFmI5VTKDxld7mmLjWMVCajbxH_38P-5DjmWtsO2bVM_AK8fxukObAUpCxj7HnMGNwTt8aa7f8kUE8abEFChV8ib5hepsBeAS3FYhpwlX8yUVZGdf5MLHhwElxWulT44abrwYj3CtVSpt1X4J5N3gQyUmo9Bjmaa5FrH6NRnQU9tFX18dBh-jdX6bRYCBqnYplpomlcO4Ol915JIHRmF5BqO2Lfdvf7xfS5WVKYX2Ig5l62-GTZVCiV4jqN9bIZK8mvD98jzvndXvtkA9NPbRq5r5d6JaY2NtbbQ0o1-EhbwxBvOXx6G0cLtcreKG6alEwguaQkJ9O4gGYd3l8LwJuIag3LpxPtelfclMsulGK7Yhv00v65Qpi4aGaGq_PZpDLAWUxPaVPC_3aRs-6HbhaXpYCgQ0rD0WM8vnw7Q9MSdDuIwiDqXm7yZHK7f-fMeGwltpHdEZOKe5CjSxbtGXW7HO1Y9C_r7UP789L0lSHEX974jFEJg-wjnlDB46qS-6xmkSu3rcG9K84s7PkXQkSfaP9Wf7uJy2oqHLqT4sfGofD_TqjJ1LnhOXfVhHqlXWt5CMFa2VVbqcbcYafurdYi7ZLJbskHjCWv7UaLPoU1A9_2JSZhGunwULwbCN6mo3oR40E2J6ba7vdvuzwtSaV-rs3oveUjqpYkUvsYZQ-sQ8J1qs_DJRp8PvpCsQ0WZAeKJF-XFQwq5TCoVPobRUQdP4n9fhxDUoB1mI-jw-sVrlVTG4lNcri1Qu1aI43NA==",[1064],{"_46":1065,"_93":523},"**Resolving merge conflicts**\n\nI need to fix some merge conflicts. First, I’m thinking about the remote repository — I wonder if it was showing before. Was there no remote set up at all? I guess it’s time to run a command to check on that! Once I know what’s going on with the remote, I can deal with these conflicts more effectively. It's a little tricky, but I'm working through it!",{"_496":1067,"_477":478,"_498":484},{"_499":1068,"_42":1069,"_518":1070,"_93":520},[],"rs_02c8ed4db34d6f3c016a5251ba71908193ab2feafa6a31f567",[1065],{"_496":1072,"_477":478,"_498":484},{"_531":1073,"_42":-5,"_502":-5,"_533":1074,"_93":535},"call_dz5oYM0efqHG79Mjn5RmBnId","Chunk ID: fef780\nWall time: 0.0008 seconds\nProcess exited with code 0\nOriginal token count: 7830\nOutput:\n\n\n# This is NOT the Next.js you know\n\nThis version has breaking changes — APIs, conventions, and file structure may all differ from your training data. Read the relevant guide in `node_modules/next/dist/docs/` before writing any code. Heed deprecation notices.\n\n\n\n\n\n## Dependency shortcut\n\nWhen the user types exactly `dependency` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for safe dependency maintenance. This is a Codex chat shortcut, not an app feature, script, automation, or CI workflow.\n\nGoal:\nUpdate direct project dependencies to the newest stable compatible versions, regenerate the existing lockfile, identify source/config/test code that relies on old dependency behavior, make the smallest safe compatibility changes, and verify the result. Do not rewrite the project, switch package managers, discard user work, commit, push, deploy, or run destructive cleanup without explicit confirmation.\n\nStart with read-only inspection:\n\n- Check branch, upstream, worktrees, recent relevant history, and `git status`.\n- If on `main`, `master`, `develop`, `release/*`, or another protected/base branch, create/switch to `codex/dependency-maintenance` before editing, if safe.\n- Inspect manifests, lockfiles, package-manager config, runtime/toolchain files, workspace layout, CI config, scripts, and documented checks.\n- Detect repo-local install/dev/test/build/watch/server processes that could race dependency updates.\n- Preserve all existing staged, unstaged, and untracked user work.\n\nPackage-manager rules:\n\n- Use the package manager already used by the repo: npm, pnpm, yarn, bun, pip, poetry, uv, cargo, go, bundler, gradle, maven, dotnet, or equivalent.\n- Do not switch package managers or create a new lockfile type.\n- Respect engines, runtime versions, lockfiles, workspaces, wrappers, and repo conventions.\n- In monorepos or polyglot repos, update each ecosystem through its native workspace-aware workflow.\n\nDependency update rules:\n\n- Identify outdated direct production and development dependencies.\n- Compare both manifest ranges and locked/installed versions against latest stable compatible releases.\n- Treat “outdated packages found” exit codes as normal where applicable.\n- Avoid prerelease, alpha, beta, canary, rc, next, nightly, and experimental versions unless the stable channel points there and explain why.\n- Do not use force or legacy flags that bypass peer, engine, resolver, or lockfile integrity checks unless explicitly approved.\n- Do not run forced audit fixes or broad destructive codemods.\n- If latest is incompatible, use the newest compatible version and document why.\n- Group risky updates coherently, such as framework plus plugins, test runner plus coverage, lint core plus plugins, or runtime plus adapter packages.\n\nCompatibility audit:\n\n- For every major update and every core framework/runtime/build/test/lint/UI/database update, inspect release notes, migration guides, peer ranges, engines, and changelogs when available.\n- Search source, tests, scripts, config, and CI for imports, APIs, CLI flags, config keys, environment variables, plugin names, generated types, or file paths tied to changed dependencies.\n- If old dependency behavior is used, make the smallest safe migration that preserves behavior.\n- If migration is large, risky, architectural, or product-affecting, stop after discovery and provide a concrete fix plan with affected files, package versions, sequence, and verification commands.\n- Add or adjust focused tests only when needed to prove migrated behavior.\n\nGenerated and sensitive files:\n\n- Do not intentionally keep dependency directories, build outputs, caches, logs, local state, test artifacts, browser artifacts, `.env*`, secrets, keys, tokens, credentials, or machine-local config.\n- Manifest and existing lockfile changes are allowed.\n\nVerification:\n\n- Run a cheap baseline first when useful to distinguish pre-existing failures.\n- After updates, run install/dependency validation, then relevant lint, type check, tests, build, smoke/UI/a11y, codegen, integration checks, or equivalent.\n- For frontend/browser-facing changes, run browser/UI verification when framework, bundler, router, styling, test runner, or browser automation changed.\n- If a check fails, fix dependency-related breakage and rerun the smallest failing check before broader checks.\n- Run non-mutating audit/vulnerability checks when available.\n- Confirm no repo-owned dev server, watcher, or temporary process was left running unless requested.\n\nFinal response for `dependency` must include:\n\n- Branch and worktree state.\n- Package manager, runtime, manifests, and lockfiles detected.\n- Outdated dependencies found.\n- Dependencies updated, old version -> new version.\n- Dependencies not updated and why.\n- Files changed.\n- Compatibility migrations and old APIs found/fixed.\n- Checks run and results.\n- Checks not run and why.\n- Audit/vulnerability summary.\n- Generated/untracked files left behind.\n- Branch movement, external repo changes, or process cleanup observed.\n- Risks or follow-up work.\n- Confirmation that no commit or push was made unless explicitly requested.\n\nAfter setup:\n\n- Verify root `AGENTS.md` contains exactly one `## Dependency shortcut` section.\n- Show the final diff for `AGENTS.md`.\n- Summarize what changed.\n- Confirm no dependency update, install, test, build, audit, commit, or push was performed.\n\n\n\n\n\n## Bug-hunter shortcut\n\nWhen the user types exactly `bug-hunter` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for targeted defect discovery.\n\nExecution rules:\n\n- Invoke the `bug-hunter` skill first.\n- Prioritize reproducible defects over code style, naming, or formatting feedback.\n- Trace realistic failure paths: invalid input, empty states, retries, race/concurrency issues, stale state/cache, network/auth failures, permissions, and boundary values.\n- For each finding, include trigger, expected behavior, actual risk, and the smallest proof (or targeted test/check) that would catch it.\n- If no high-confidence defect is found, explicitly state that and list the most likely residual risk area.\n\nScope and safety:\n\n- Keep the hunt scoped to code touched by the user request unless the defect clearly crosses module boundaries.\n- Do not make broad refactors while hunting; propose minimal fixes for confirmed issues.\n- Run the smallest focused verification for each confirmed defect, then expand only if needed.\n\n\n\n\n\n## Codex review throttling and routing\n\nDo not review branches opportunistically. Review the current changed diff, PR, or branch only when the user explicitly asks for review/audit/hunter/cleanup/upload work, when CI/check failures are the task, or when the current change touches high-risk areas that require a targeted review before handoff.\n\nUse `docs/codex-review-protocol.md` as the shared review protocol for every repo-local review skill, branch/PR review, audit, bug hunt, release-readiness check, and PR/CI review.\n\nBefore reviewing a branch or PR:\n\n- Check `docs/branch-review-ledger.md` if it exists.\n- Resolve the target with `git rev-parse `.\n- If the same branch/ref and HEAD SHA were already reviewed for the same scope, summarize the prior ledger outcome and skip the repeat review unless the user explicitly requests a fresh pass.\n- If the target HEAD changed, review only the changed scope and update the ledger after the review.\n\nBefore reviewing multiple branches:\n\n- Build a short branch inventory first: branch, upstream, ahead/behind, last commit, and merged status.\n- Skip branches already merged into `main`.\n- Skip unchanged branches already recorded in `docs/branch-review-ledger.md`.\n- Do not re-review every branch after ordinary coding tasks.\n- If a repeated request targets unchanged reviewed branches, summarize the prior result and ask before doing another full pass.\n\nReview routing:\n\n- `diff-review`: Use for explicit review of the current diff, PR, or named branch. Findings first, ordered by severity, with file/line evidence.\n- `bug-hunter`: Use only for the exact `bug-hunter` shortcut or an explicit defect-hunt request. Prioritize reproducible bugs and smallest proof.\n- `repo-auditor`: Use for explicit repo-wide audit/refactor/dead-code/import/dependency-structure requests. Treat outputs as triage, not automatic delete lists.\n- `release-readiness`: Use for explicit release, merge, PR readiness, or handoff confidence requests. Do not run provider-backed gates without confirmation.\n- `branch-cleanup`: Use only when the prompt explicitly asks for branch cleanup/hygiene or branch deletion candidates. Apply `docs/branch-cleanup-guide.md` and the review ledger before inspecting branch diffs.\n- `pr-ci-fix`: Confirmation-required for this repo. GitHub/GitLab API calls, PR comments, CI reruns, commits, and pushes require explicit user approval and must respect the upload/handoff rules.\n\nWhen a branch or PR review completes, record the reviewed branch/ref, HEAD SHA, date, scope, outcome, and checks in `docs/branch-review-ledger.md`.\n\n\n\n\n\n# Local server safety\n\n- If the user says `run`, execute `npm run ensure` and return the printed URL.\n- If the user asks for UI/frontend changes, browser QA, screenshots, mobile checks, or a local app link, run `npm run ensure` before opening or testing the app, even if the user did not say `run`.\n- Never assume `localhost:3000`, `localhost:3001`, or `localhost:3002`.\n- Never attach to a local server unless `/api/local-project-id` confirms it is this project.\n- Do not kill or modify other projects' local servers. If the stable project port is busy, let `npm run ensure` choose the next safe project URL.\n- Do not run a permanent watcher. Only start or verify the server when the current chat task needs the app or the user asks to run it.\n\n\n\n\n\n# Process hardening phases\n\n- For non-trivial source/config/test changes, prefer `npm run verify:cheap` as the first broad gate.\n- For UI, frontend, browser, routing, styling, reduced-motion, or forced-colors changes, run `npm run ensure` before browser work and use `npm run verify:ui` as the Chromium UI gate.\n- For release or handoff confidence, use `npm run verify:release`; this includes the full Playwright project set.\n- For clinical ingestion, answer generation, source governance, privacy, production-readiness, or environment changes, run the smallest relevant domain check plus `npm run check:production-readiness`.\n- For pull requests that touch ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output, complete the clinical governance preflight in `.github/pull_request_template.md`.\n- Track known verification debts and staged process improvements in `docs/process-hardening.md` instead of relying on chat-only memory.\n\n\n\n\n\n# Supabase project safety\n\n- This repo targets the live Supabase project `Clinical KB Database`.\n- Expected project ref: `sjrfecxgysukkwxsowpy`.\n- Older unused project ref `qjgitjyhxrwxsrydablr` belongs to `Database`; treat it as stale and do not use it.\n- Run `npm run check:supabase-project` after changing Supabase env values.\n\n\n\n\n\n# API and provider confirmation boundary\n\n- Never run, modify, test, or otherwise interact with OpenAI, Supabase, GitHub/GitLab, hosted CI, production-like services, or provider-backed workflows without explicit user confirmation.\n- Treat indirect API usage inside scripts, tests, release checks, PR tooling, and review automation as confirmation-required too.\n- Prefer local, static, mocked, or offline checks. If a recommended verification would touch a provider, report the command and ask before running it.\n- `npm run check:supabase-project`, live PR/CI tooling, answer-generation checks, ingestion checks against live services, and release gates that call providers are not automatic.\n\n\n\n\n\n# `upload` shortcut\n\nWhen the user types exactly:\n\nupload\n\nas the entire task message, treat it as a shortcut for the safe Git handoff workflow below.\n\nThe goal is to leave useful completed work safely committed and, where safe, pushed to the current feature branch. The goal is not to merge into main, delete branches, discard work, force-push, close PRs, deploy, or perform destructive cleanup without explicit user confirmation.\n\n## Protected and base branches\n\nTreat `main`, `master`, `develop`, and `release/*` as protected/base branches for this workflow.\n\nIf `upload` is run while on `main`, automatically create or use a branch named exactly `temporary` before staging, committing, or pushing, then continue the upload workflow from `temporary`:\n\n- If neither local `temporary` nor `origin/temporary` exists, run `git switch -c temporary`.\n- If local `temporary` exists and is not checked out in another worktree, switch to it only when it is clearly safe.\n- If `origin/temporary` exists, use it only when it is clearly the matching intended branch.\n- If any `temporary` branch state is ambiguous, diverged, checked out elsewhere, or unsafe, stop and ask instead of overwriting.\n\nIf already on a non-protected feature branch, continue using that branch.\n\n## Required inspection\n\nStart with read-only inspection before making changes. Check:\n\n- Current branch or detached HEAD state\n- `git status`\n- Staged, unstaged, and untracked files\n- Recent commits relevant to the current branch\n- Remote configuration and upstream branch\n- Whether the branch is ahead, behind, or diverged\n- Whether the current branch appears protected/base\n- Other Git worktrees, if detectable\n- Available checks such as tests, lint, type check, or build scripts\n- Existing branch, commit, PR, and release-flow conventions\n\nDo not assume branch names, remotes, package managers, test commands, deployment targets, or project structure. Inspect first.\n\n## Safe actions allowed without further confirmation\n\nWhen the repository state makes it clearly safe, you may:\n\n- Stage coherent completed changes that clearly belong together\n- Create one or more logical commits with clear messages based on the diff\n- Fast-forward pull only when there are no local commits or conflict risks\n- Push the current non-protected feature branch if it has a valid upstream\n- Set an upstream for the current feature branch only when the correct remote and branch name are obvious\n- Leave the worktree clean by committing safe completed changes\n\n## Actions requiring explicit confirmation\n\nDo not perform these without asking the user first:\n\n- `git reset --hard`\n- `git clean -fd` or other destructive cleanup\n- Discarding, overwriting, or reverting uncommitted changes\n- Deleting local or remote branches\n- Renaming branches\n- Force-pushing\n- Rebasing a shared/public branch\n- Resolving divergent branch history\n- Merging into `main`, `master`, `develop`, `release/*`, or any protected/base branch\n- Closing pull requests\n- Changing GitHub default branch, branch protection, repository settings, or deployment settings\n- Modifying production data or deployment configuration\n- Committing secrets, credentials, tokens, private keys, or sensitive local configuration\n- Updating branch references where the correct replacement branch is ambiguous\n\nIf any of these seem necessary, stop and report what is risky, why it is risky, the recommended next step, and the exact confirmation needed.\n\n## Mixed, suspicious, or unsafe changes\n\nDo not automatically commit files that look like `.env` files, credentials, secrets, logs, caches, build artifacts, editor or OS files, temporary/debug files, or generated files not normally committed by this project. Report only the path and concern for possible secrets; never print secret values.\n\nIf changes appear unrelated, incomplete, experimental, or WIP, do not commit everything together automatically. Commit only clearly coherent completed changes when safe; otherwise summarize the groups and ask what should be included.\n\n## Branch cleanup and reference updates\n\nDuring `upload`, branch cleanup is limited to the current branch and its upstream unless the user explicitly asks for `branch-cleanup`, branch hygiene, deletion candidates, or stale branch review.\n\nDo not enumerate, diff, or re-review unrelated stale branches during a normal upload/handoff. If the user explicitly asks for branch cleanup, first apply `docs/branch-review-ledger.md` to skip unchanged reviewed branches, then follow `docs/branch-cleanup-guide.md`.\n\nIf stale, inappropriate, merged, or unnecessary current-branch references are detected, list cleanup candidates but do not delete or rename branches automatically.\n\nBefore recommending deletion or rename for the current branch, audit accessible references including `.github/workflows/*`, CI/CD config, deployment config, scripts, package scripts, docs, release notes or release scripts, safe environment/config files, branch-specific config, open PR metadata if accessible, and GitHub branch protection/default branch metadata if safely accessible.\n\nUpdate repo-tracked references to a renamed or replacement branch only when the old branch reference is clearly found, the replacement is obvious, the change is low-risk, and the user has approved the branch rename or deletion. If the replacement is unclear, report the reference and ask what it should point to.\n\n## Syncing and verification\n\nDo not rebase, merge, or resolve remote divergence automatically. Fast-forward pulls are allowed only when clearly safe. Push only the current non-protected feature branch when clearly safe.\n\nRun the smallest relevant checks that are available and appropriate, such as tests, lint, type check, or build checks. Do not claim checks passed unless they were actually run. If checks cannot be run, explain why and state the command that would normally be used.\n\n## Final report\n\nAfter completing `upload`, summarize the current branch and worktree state, whether the worktree is clean, what changed, files committed, commit hash and message if created, whether anything was pushed, remote branch and likely PR target, checks run and results, checks not run and why, current-branch cleanup candidates or why broader branch cleanup was skipped, branch references found or updated, risky actions skipped, and exact confirmation needed for any recommended follow-up.\n\n\n\n\n\n## Codex productivity defaults\n\n- Treat terse prompts as workflow shortcuts when the intent is clear. If the user says `run`, execute `npm run ensure`, verify the project identity through that helper, and return the printed local URL without a long log dump.\n- For non-trivial changes, start from concrete repo state: branch, `git status`, relevant package scripts, recent failures, and local logs such as `dev-server.log` when runtime behavior is involved. For architecture and module orientation, read `docs/codebase-index.md` (routes: `docs/site-map.md`).\n- For UI, browser, styling, routing, accessibility, or screenshot work, run `npm run ensure` before opening the app, then use browser QA and the smallest relevant UI proof before broader gates.\n- Prefer the smallest failing check first. For this repo, use focused Vitest or Playwright targets before widening to `npm run verify:cheap`, `npm run verify:ui`, or `npm run verify:release`.\n- When the user says `safely`, preserve unrelated staged, unstaged, and untracked work; stop only clearly repo-owned transient processes; and verify the result instead of doing broad cleanup.\n- After auth, Supabase, ingestion, answer generation, search/ranking, clinical output, or source-governance changes, run the smallest domain check plus `npm run check:production-readiness`. Run `npm run check:supabase-project` after Supabase env/config changes.\n- For handoff, archive-safety, or upload-style requests, inspect branch/upstream/status first, run the appropriate verification gate, and only commit or push when the request explicitly asks for that workflow.\n- For codebase appraisal exports, stage outside the repo, include `EXPORT_MANIFEST.md`, exclude secrets/dependencies/build outputs/local state, and verify the archive can be opened before handoff.\n- When a repeated repo-specific workflow is discovered, update this file or ask the user whether it should be remembered.\n\n\n\n## Codex GitHub review behavior\n\nThese instructions apply to Codex GitHub pull request reviews and Codex tasks started from PR comments.\n\n- Keep automatic reviews focused and cost-conscious.\n- Prioritize high-confidence findings that affect correctness, security, privacy, data loss, auth/permissions, migrations, API contracts, production reliability, clinical behavior, source governance, or user-facing behavior.\n- Do not comment on formatting, naming, style, minor cleanup, or speculative refactors unless they create a real bug or maintainability risk.\n- Prefer fewer, stronger findings over exhaustive low-value review comments.\n- A finding must cite concrete changed code and explain the failure mode.\n- Do not suggest broad rewrites during review. Recommend the smallest change that resolves the issue.\n- Do not propose or start fixes unless explicitly asked with an `@codex fix...` or `@codex resolve...` comment, or when the repository's Codex auto-resolve workflow posts that command.\n\n### Severity calibration\n\n- P0: active security exposure, data loss/corruption already possible, severe production outage risk, credential leakage, or a critical issue that must be fixed immediately.\n- P1: security vulnerability, auth bypass, data exposure/loss, destructive migration risk, production-breaking regression, public API contract break, severe clinical/user-facing bug, or missing validation with realistic exploit/failure impact.\n- P2: important correctness bug, missing behavior test for meaningful changed behavior, edge case likely to affect users, reliability issue, unsafe assumption, or maintainability issue that will likely cause defects.\n- P3: style, naming, formatting, small cleanup, speculative improvements, or optional refactors. Avoid raising these in automatic reviews unless explicitly requested.\n\nFor GitHub automatic reviews, focus mainly on P1-level findings. If a P2 issue is important enough to block the PR, explain why it should be treated as P1.\n\n### PR risk detection\n\nWhen reviewing, identify whether the PR touches any high-risk area:\n\n- authentication or authorization\n- user data, privacy, or private document access\n- database schema, migrations, RLS, SECURITY DEFINER functions, or Supabase privileges\n- clinical answer generation, source governance, retrieval/ranking, ingestion, or document access\n- payment, billing, subscriptions, or quotas\n- public API contracts\n- production configuration or deployment behavior\n- background jobs, scheduled tasks, workers, or queue processing\n- file upload/download or generated document access\n- AI/API provider calls, paid external services, or credential-dependent workflows\n\nIf a high-risk area is touched, review more carefully for regressions, missing tests, rollback/safety notes, and conservative failure behavior.\n\n### Cost and usage control\n\nAvoid broad repeated review passes. Do not request exhaustive review behavior unless the PR touches security, auth, data loss, migrations, billing, production reliability, clinical output, source governance, or private document access. Prefer targeted validation and targeted review comments.\n\n### Fix behavior\n\nWhen explicitly asked to fix or resolve review findings:\n\n- Always fix P0 and P1 findings using the best minimal fix.\n- For P2 and lower-severity findings, decide whether the issue is worth fixing automatically.\n- Fix a P2 or lower finding only when the fix is clear, scoped, low-risk, and testable.\n- Do not automatically fix a P2 or lower finding when it requires broad refactoring, product judgment, dependency changes, credentials, paid/external APIs, large design decisions, or risky behavior changes.\n- If a P2 or lower finding is not worth fixing automatically, comment with the reason and the recommended human decision, then resolve the review conversation when supported.\n- Preserve unrelated work and avoid opportunistic refactors.\n- Do not add dependencies unless the issue cannot reasonably be fixed without one.\n- Do not change secrets, credentials, environment configuration, billing settings, deployment settings, or external service setup unless explicitly requested.\n- Do not use external APIs, paid services, credentials, secrets, live Supabase projects, or OpenAI provider calls unless explicitly authorized.\n- If a finding is ambiguous, unsafe to fix automatically, or requires a large rewrite, stop and explain the decision instead of guessing.\n- Add or update the smallest relevant test when the issue affects behavior.\n- Run the narrowest relevant validation for the touched surface before broader suites.\n- Summarize fixed issues, changed files, validation run, and any remaining human decisions.\n\n### Review comment lifecycle\n\n- Treat closing review conversations as part of the task when asked to fix or resolve comments.\n- After fixing a P0 or P1 finding, reply with the fix summary and resolve the review conversation when supported by GitHub permissions/tooling.\n- After fixing an approved P2 or lower finding, reply with the fix summary and resolve the review conversation when supported.\n- After deciding not to fix a P2 or lower finding, reply with the reason, note whether it is deferred or not actionable, and resolve the review conversation when supported.\n- Do not leave a review conversation open after it has been fixed or explicitly dispositioned.\n- If GitHub permissions/tooling do not allow resolving a review conversation, leave a clear reply that says the issue is fixed or dispositioned and that the conversation is ready for a human to resolve.\n\n### Automatic resolve trigger\n\nAutomatic Codex review is review-only by default. This repository includes `.github/workflows/codex-autofix-review-comments.yml`, which requests the resolve task automatically after Codex posts a PR review or inline review comment.\n\n- The workflow must only trigger from Codex review bot reviews or comments on open pull requests.\n- The workflow must skip review-thread replies and auto-resolve request comments so Codex fix summaries do not re-trigger the workflow.\n- The workflow must ask Codex to resolve all review comments using these repository instructions.\n- The workflow must avoid duplicate requests for the same pull request, even after follow-up commits change the head SHA.\n- The workflow must not run Codex directly with API credentials.\n- P0 and P1 findings should always be fixed.\n- P2 and lower findings should be fixed only when clear, scoped, low-risk, and testable; otherwise explain the decision and resolve or mark ready for human resolution.\n\n### Primary PR command\n\n`@codex resolve actionable Codex review findings for this pull request and current head using the repository instructions. Always fix P0 and P1 findings. For P2 and lower findings, decide whether each is worth fixing automatically. Fix clear, scoped, low-risk issues with the best minimal change; otherwise reply explaining why the issue is deferred or not actionable. Do not update the branch from main, address unrelated reviews, broaden scope, or create more than one scoped fix commit unless explicitly asked. After each fix or decision, resolve the review conversation if supported. Do not use external APIs, paid services, credentials, dependency changes, or broad refactors unless explicitly authorized. Add targeted tests where behavior changes and run the narrowest relevant validation.`\n\n## Cursor Cloud specific instructions\n\nDurable notes for Cloud Agents. Standard commands live in `README.md` and `package.json`; only non-obvious caveats are captured here.\n\n- Runtime: the app hard-requires Node 24.x / npm 11.x (`engine-strict`, and `scripts/dev-free-port.mjs` exits on any other major). Node 24 is installed via nvm and symlinked into `/usr/local/cargo/bin` (first entry in `PATH`) so `node`/`npm` resolve to v24 in every shell. If a shell ever resolves `/exec-daemon/node` (v22) instead, prepend `\"$HOME/.nvm/versions/node/v24.18.0/bin\"` to `PATH`.\n- Live vs demo mode: the app auto-detects. When the Supabase + OpenAI env vars below are present (set them as Cloud Agent **Secrets** so they inject into `.env.local`/`process.env`), `isDemoMode()` (`src/lib/env.ts`) is false and the app runs against the live `Clinical KB Database` project (~2000 indexed docs) with OpenAI answer generation. When they are absent, dev auto-falls back to demo mode using the synthetic corpus in `src/lib/demo-data.ts` / `public/demo-documents/`. Required for live mode: `NEXT_PUBLIC_SUPABASE_URL`, `SUPABASE_PROJECT_REF`, `SUPABASE_PROJECT_NAME`, `NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY` (`sb_publishable_…`), `SUPABASE_SERVICE_ROLE_KEY` (accepts the `sb_secret_…` secret key), `OPENAI_API_KEY`. Keep `RAG_PROVIDER_MODE=auto` so OpenAI is used with graceful source-only fallback. `E2E_USER_EMAIL`/`E2E_USER_PASSWORD` power CI env-check and Playwright.\n- Live-mode caveat: `RAG_PROVIDER_MODE=auto` attempts OpenAI (fast → strong route); if generation fails the built-in quality gates it silently degrades to a deterministic \"Source-only\" answer that still cites real documents — this is expected, not a failure. The header sign-in UI exposes magic-link + OAuth only (no password field), but the `/api/answer` + retrieval flow works server-side without a browser session.\n- What still won't run in this VM even with secrets: `npm run worker` also needs the Python OCR stack (`worker/python/requirements.txt`) and heavy parsing deps; Supabase edge functions need Deno v2.x + deployment. `verify:release` additionally runs governance/eval gates. Treat missing-secret failures of `check:supabase-project`/`verify:release` in demo mode as expected, not regressions.\n- Dev server: `npm run dev` selects a stable per-project localhost port (e.g. `4461`), binds `0.0.0.0`, and prints the exact URL. Never assume port 3000/3001/3002. `npm run ensure` starts/verifies it in the background.\n- Verification without secrets: `npm run lint`, `npm run typecheck`, and `npm run test` (vitest) all pass offline. `npm run verify:cheap` also runs `check:runtime` + `sitemap:check` and is safe offline.\nOn branch work\nnothing to commit, working tree clean\n84fbeca (HEAD -> work) refactor(ui): compact mode-home heroes, cards, and headings\n648abfa docs: align readiness runtime version\n155c801 chore: clean readiness lint warnings (#453)\nc35333a Codex/fix GitHub runners (#452)\n4ba3deb fix: require scoped Codex auto-resolve command (#447)\n/workspace/Database 84fbeca [work]\n",{"_496":1076,"_477":478,"_498":484},{"_577":1077,"_579":1078,"_581":1079,"_583":584,"_482":32,"_586":32,"_42":1073,"_588":1080,"_590":591,"_489":114,"_93":592},"\n\n# This is NOT the Next.js you know\n\nThis version has breaking changes — APIs, conventions, and file structure may all differ from your training data. Read the relevant guide in `node_modules/next/dist/docs/` before writing any code. Heed deprecation notices.\n\n\n\n\n\n## Dependency shortcut\n\nWhen the user types exactly `dependency` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for safe dependency maintenance. This is a Codex chat shortcut, not an app feature, script, automation, or CI workflow.\n\nGoal:\nUpdate direct project dependencies to the newest stable compatible versions, regenerate the existing lockfile, identify source/config/test code that relies on old dependency behavior, make the smallest safe compatibility changes, and verify the result. Do not rewrite the project, switch package managers, discard user work, commit, push, deploy, or run destructive cleanup without explicit confirmation.\n\nStart with read-only inspection:\n\n- Check branch, upstream, worktrees, recent relevant history, and `git status`.\n- If on `main`, `master`, `develop`, `release/*`, or another protected/base branch, create/switch to `codex/dependency-maintenance` before editing, if safe.\n- Inspect manifests, lockfiles, package-manager config, runtime/toolchain files, workspace layout, CI config, scripts, and documented checks.\n- Detect repo-local install/dev/test/build/watch/server processes that could race dependency updates.\n- Preserve all existing staged, unstaged, and untracked user work.\n\nPackage-manager rules:\n\n- Use the package manager already used by the repo: npm, pnpm, yarn, bun, pip, poetry, uv, cargo, go, bundler, gradle, maven, dotnet, or equivalent.\n- Do not switch package managers or create a new lockfile type.\n- Respect engines, runtime versions, lockfiles, workspaces, wrappers, and repo conventions.\n- In monorepos or polyglot repos, update each ecosystem through its native workspace-aware workflow.\n\nDependency update rules:\n\n- Identify outdated direct production and development dependencies.\n- Compare both manifest ranges and locked/installed versions against latest stable compatible releases.\n- Treat “outdated packages found” exit codes as normal where applicable.\n- Avoid prerelease, alpha, beta, canary, rc, next, nightly, and experimental versions unless the stable channel points there and explain why.\n- Do not use force or legacy flags that bypass peer, engine, resolver, or lockfile integrity checks unless explicitly approved.\n- Do not run forced audit fixes or broad destructive codemods.\n- If latest is incompatible, use the newest compatible version and document why.\n- Group risky updates coherently, such as framework plus plugins, test runner plus coverage, lint core plus plugins, or runtime plus adapter packages.\n\nCompatibility audit:\n\n- For every major update and every core framework/runtime/build/test/lint/UI/database update, inspect release notes, migration guides, peer ranges, engines, and changelogs when available.\n- Search source, tests, scripts, config, and CI for imports, APIs, CLI flags, config keys, environment variables, plugin names, generated types, or file paths tied to changed dependencies.\n- If old dependency behavior is used, make the smallest safe migration that preserves behavior.\n- If migration is large, risky, architectural, or product-affecting, stop after discovery and provide a concrete fix plan with affected files, package versions, sequence, and verification commands.\n- Add or adjust focused tests only when needed to prove migrated behavior.\n\nGenerated and sensitive files:\n\n- Do not intentionally keep dependency directories, build outputs, caches, logs, local state, test artifacts, browser artifacts, `.env*`, secrets, keys, tokens, credentials, or machine-local config.\n- Manifest and existing lockfile changes are allowed.\n\nVerification:\n\n- Run a cheap baseline first when useful to distinguish pre-existing failures.\n- After updates, run install/dependency validation, then relevant lint, type check, tests, build, smoke/UI/a11y, codegen, integration checks, or equivalent.\n- For frontend/browser-facing changes, run browser/UI verification when framework, bundler, router, styling, test runner, or browser automation changed.\n- If a check fails, fix dependency-related breakage and rerun the smallest failing check before broader checks.\n- Run non-mutating audit/vulnerability checks when available.\n- Confirm no repo-owned dev server, watcher, or temporary process was left running unless requested.\n\nFinal response for `dependency` must include:\n\n- Branch and worktree state.\n- Package manager, runtime, manifests, and lockfiles detected.\n- Outdated dependencies found.\n- Dependencies updated, old version -> new version.\n- Dependencies not updated and why.\n- Files changed.\n- Compatibility migrations and old APIs found/fixed.\n- Checks run and results.\n- Checks not run and why.\n- Audit/vulnerability summary.\n- Generated/untracked files left behind.\n- Branch movement, external repo changes, or process cleanup observed.\n- Risks or follow-up work.\n- Confirmation that no commit or push was made unless explicitly requested.\n\nAfter setup:\n\n- Verify root `AGENTS.md` contains exactly one `## Dependency shortcut` section.\n- Show the final diff for `AGENTS.md`.\n- Summarize what changed.\n- Confirm no dependency update, install, test, build, audit, commit, or push was performed.\n\n\n\n\n\n## Bug-hunter shortcut\n\nWhen the user types exactly `bug-hunter` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for targeted defect discovery.\n\nExecution rules:\n\n- Invoke the `bug-hunter` skill first.\n- Prioritize reproducible defects over code style, naming, or formatting feedback.\n- Trace realistic failure paths: invalid input, empty states, retries, race/concurrency issues, stale state/cache, network/auth failures, permissions, and boundary values.\n- For each finding, include trigger, expected behavior, actual risk, and the smallest proof (or targeted test/check) that would catch it.\n- If no high-confidence defect is found, explicitly state that and list the most likely residual risk area.\n\nScope and safety:\n\n- Keep the hunt scoped to code touched by the user request unless the defect clearly crosses module boundaries.\n- Do not make broad refactors while hunting; propose minimal fixes for confirmed issues.\n- Run the smallest focused verification for each confirmed defect, then expand only if needed.\n\n\n\n\n\n## Codex review throttling and routing\n\nDo not review branches opportunistically. Review the current changed diff, PR, or branch only when the user explicitly asks for review/audit/hunter/cleanup/upload work, when CI/check failures are the task, or when the current change touches high-risk areas that require a targeted review before handoff.\n\nUse `docs/codex-review-protocol.md` as the shared review protocol for every repo-local review skill, branch/PR review, audit, bug hunt, release-readiness check, and PR/CI review.\n\nBefore reviewing a branch or PR:\n\n- Check `docs/branch-review-ledger.md` if it exists.\n- Resolve the target with `git rev-parse `.\n- If the same branch/ref and HEAD SHA were already reviewed for the same scope, summarize the prior ledger outcome and skip the repeat review unless the user explicitly requests a fresh pass.\n- If the target HEAD changed, review only the changed scope and update the ledger after the review.\n\nBefore reviewing multiple branches:\n\n- Build a short branch inventory first: branch, upstream, ahead/behind, last commit, and merged status.\n- Skip branches already merged into `main`.\n- Skip unchanged branches already recorded in `docs/branch-review-ledger.md`.\n- Do not re-review every branch after ordinary coding tasks.\n- If a repeated request targets unchanged reviewed branches, summarize the prior result and ask before doing another full pass.\n\nReview routing:\n\n- `diff-review`: Use for explicit review of the current diff, PR, or named branch. Findings first, ordered by severity, with file/line evidence.\n- `bug-hunter`: Use only for the exact `bug-hunter` shortcut or an explicit defect-hunt request. Prioritize reproducible bugs and smallest proof.\n- `repo-auditor`: Use for explicit repo-wide audit/refactor/dead-code/import/dependency-structure requests. Treat outputs as triage, not automatic delete lists.\n- `release-readiness`: Use for explicit release, merge, PR readiness, or handoff confidence requests. Do not run provider-backed gates without confirmation.\n- `branch-cleanup`: Use only when the prompt explicitly asks for branch cleanup/hygiene or branch deletion candidates. Apply `docs/branch-cleanup-guide.md` and the review ledger before inspecting branch diffs.\n- `pr-ci-fix`: Confirmation-required for this repo. GitHub/GitLab API calls, PR comments, CI reruns, commits, and pushes require explicit user approval and must respect the upload/handoff rules.\n\nWhen a branch or PR review completes, record the reviewed branch/ref, HEAD SHA, date, scope, outcome, and checks in `docs/branch-review-ledger.md`.\n\n\n\n\n\n# Local server safety\n\n- If the user says `run`, execute `npm run ensure` and return the printed URL.\n- If the user asks for UI/frontend changes, browser QA, screenshots, mobile checks, or a local app link, run `npm run ensure` before opening or testing the app, even if the user did not say `run`.\n- Never assume `localhost:3000`, `localhost:3001`, or `localhost:3002`.\n- Never attach to a local server unless `/api/local-project-id` confirms it is this project.\n- Do not kill or modify other projects' local servers. If the stable project port is busy, let `npm run ensure` choose the next safe project URL.\n- Do not run a permanent watcher. Only start or verify the server when the current chat task needs the app or the user asks to run it.\n\n\n\n\n\n# Process hardening phases\n\n- For non-trivial source/config/test changes, prefer `npm run verify:cheap` as the first broad gate.\n- For UI, frontend, browser, routing, styling, reduced-motion, or forced-colors changes, run `npm run ensure` before browser work and use `npm run verify:ui` as the Chromium UI gate.\n- For release or handoff confidence, use `npm run verify:release`; this includes the full Playwright project set.\n- For clinical ingestion, answer generation, source governance, privacy, production-readiness, or environment changes, run the smallest relevant domain check plus `npm run check:production-readiness`.\n- For pull requests that touch ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output, complete the clinical governance preflight in `.github/pull_request_template.md`.\n- Track known verification debts and staged process improvements in `docs/process-hardening.md` instead of relying on chat-only memory.\n\n\n\n\n\n# Supabase project safety\n\n- This repo targets the live Supabase project `Clinical KB Database`.\n- Expected project ref: `sjrfecxgysukkwxsowpy`.\n- Older unused project ref `qjgitjyhxrwxsrydablr` belongs to `Database`; treat it as stale and do not use it.\n- Run `npm run check:supabase-project` after changing Supabase env values.\n\n\n\n\n\n# API and provider confirmation boundary\n\n- Never run, modify, test, or otherwise interact with OpenAI, Supabase, GitHub/GitLab, hosted CI, production-like services, or provider-backed workflows without explicit user confirmation.\n- Treat indirect API usage inside scripts, tests, release checks, PR tooling, and review automation as confirmation-required too.\n- Prefer local, static, mocked, or offline checks. If a recommended verification would touch a provider, report the command and ask before running it.\n- `npm run check:supabase-project`, live PR/CI tooling, answer-generation checks, ingestion checks against live services, and release gates that call providers are not automatic.\n\n\n\n\n\n# `upload` shortcut\n\nWhen the user types exactly:\n\nupload\n\nas the entire task message, treat it as a shortcut for the safe Git handoff workflow below.\n\nThe goal is to leave useful completed work safely committed and, where safe, pushed to the current feature branch. The goal is not to merge into main, delete branches, discard work, force-push, close PRs, deploy, or perform destructive cleanup without explicit user confirmation.\n\n## Protected and base branches\n\nTreat `main`, `master`, `develop`, and `release/*` as protected/base branches for this workflow.\n\nIf `upload` is run while on `main`, automatically create or use a branch named exactly `temporary` before staging, committing, or pushing, then continue the upload workflow from `temporary`:\n\n- If neither local `temporary` nor `origin/temporary` exists, run `git switch -c temporary`.\n- If local `temporary` exists and is not checked out in another worktree, switch to it only when it is clearly safe.\n- If `origin/temporary` exists, use it only when it is clearly the matching intended branch.\n- If any `temporary` branch state is ambiguous, diverged, checked out elsewhere, or unsafe, stop and ask instead of overwriting.\n\nIf already on a non-protected feature branch, continue using that branch.\n\n## Required inspection\n\nStart with read-only inspection before making changes. Check:\n\n- Current branch or detached HEAD state\n- `git status`\n- Staged, unstaged, and untracked files\n- Recent commits relevant to the current branch\n- Remote configuration and upstream branch\n- Whether the branch is ahead, behind, or diverged\n- Whether the current branch appears protected/base\n- Other Git worktrees, if detectable\n- Available checks such as tests, lint, type check, or build scripts\n- Existing branch, commit, PR, and release-flow conventions\n\nDo not assume branch names, remotes, package managers, test commands, deployment targets, or project structure. Inspect first.\n\n## Safe actions allowed without further confirmation\n\nWhen the repository state makes it clearly safe, you may:\n\n- Stage coherent completed changes that clearly belong together\n- Create one or more logical commits with clear messages based on the diff\n- Fast-forward pull only when there are no local commits or conflict risks\n- Push the current non-protected feature branch if it has a valid upstream\n- Set an upstream for the current feature branch only when the correct remote and branch name are obvious\n- Leave the worktree clean by committing safe completed changes\n\n## Actions requiring explicit confirmation\n\nDo not perform these without asking the user first:\n\n- `git reset --hard`\n- `git clean -fd` or other destructive cleanup\n- Discarding, overwriting, or reverting uncommitted changes\n- Deleting local or remote branches\n- Renaming branches\n- Force-pushing\n- Rebasing a shared/public branch\n- Resolving divergent branch history\n- Merging into `main`, `master`, `develop`, `release/*`, or any protected/base branch\n- Closing pull requests\n- Changing GitHub default branch, branch protection, repository settings, or deployment settings\n- Modifying production data or deployment configuration\n- Committing secrets, credentials, tokens, private keys, or sensitive local configuration\n- Updating branch references where the correct replacement branch is ambiguous\n\nIf any of these seem necessary, stop and report what is risky, why it is risky, the recommended next step, and the exact confirmation needed.\n\n## Mixed, suspicious, or unsafe changes\n\nDo not automatically commit files that look like `.env` files, credentials, secrets, logs, caches, build artifacts, editor or OS files, temporary/debug files, or generated files not normally committed by this project. Report only the path and concern for possible secrets; never print secret values.\n\nIf changes appear unrelated, incomplete, experimental, or WIP, do not commit everything together automatically. Commit only clearly coherent completed changes when safe; otherwise summarize the groups and ask what should be included.\n\n## Branch cleanup and reference updates\n\nDuring `upload`, branch cleanup is limited to the current branch and its upstream unless the user explicitly asks for `branch-cleanup`, branch hygiene, deletion candidates, or stale branch review.\n\nDo not enumerate, diff, or re-review unrelated stale branches during a normal upload/handoff. If the user explicitly asks for branch cleanup, first apply `docs/branch-review-ledger.md` to skip unchanged reviewed branches, then follow `docs/branch-cleanup-guide.md`.\n\nIf stale, inappropriate, merged, or unnecessary current-branch references are detected, list cleanup candidates but do not delete or rename branches automatically.\n\nBefore recommending deletion or rename for the current branch, audit accessible references including `.github/workflows/*`, CI/CD config, deployment config, scripts, package scripts, docs, release notes or release scripts, safe environment/config files, branch-specific config, open PR metadata if accessible, and GitHub branch protection/default branch metadata if safely accessible.\n\nUpdate repo-tracked references to a renamed or replacement branch only when the old branch reference is clearly found, the replacement is obvious, the change is low-risk, and the user has approved the branch rename or deletion. If the replacement is unclear, report the reference and ask what it should point to.\n\n## Syncing and verification\n\nDo not rebase, merge, or resolve remote divergence automatically. Fast-forward pulls are allowed only when clearly safe. Push only the current non-protected feature branch when clearly safe.\n\nRun the smallest relevant checks that are available and appropriate, such as tests, lint, type check, or build checks. Do not claim checks passed unless they were actually run. If checks cannot be run, explain why and state the command that would normally be used.\n\n## Final report\n\nAfter completing `upload`, summarize the current branch and worktree state, whether the worktree is clean, what changed, files committed, commit hash and message if created, whether anything was pushed, remote branch and likely PR target, checks run and results, checks not run and why, current-branch cleanup candidates or why broader branch cleanup was skipped, branch references found or updated, risky actions skipped, and exact confirmation needed for any recommended follow-up.\n\n\n\n\n\n## Codex productivity defaults\n\n- Treat terse prompts as workflow shortcuts when the intent is clear. If the user says `run`, execute `npm run ensure`, verify the project identity through that helper, and return the printed local URL without a long log dump.\n- For non-trivial changes, start from concrete repo state: branch, `git status`, relevant package scripts, recent failures, and local logs such as `dev-server.log` when runtime behavior is involved. For architecture and module orientation, read `docs/codebase-index.md` (routes: `docs/site-map.md`).\n- For UI, browser, styling, routing, accessibility, or screenshot work, run `npm run ensure` before opening the app, then use browser QA and the smallest relevant UI proof before broader gates.\n- Prefer the smallest failing check first. For this repo, use focused Vitest or Playwright targets before widening to `npm run verify:cheap`, `npm run verify:ui`, or `npm run verify:release`.\n- When the user says `safely`, preserve unrelated staged, unstaged, and untracked work; stop only clearly repo-owned transient processes; and verify the result instead of doing broad cleanup.\n- After auth, Supabase, ingestion, answer generation, search/ranking, clinical output, or source-governance changes, run the smallest domain check plus `npm run check:production-readiness`. Run `npm run check:supabase-project` after Supabase env/config changes.\n- For handoff, archive-safety, or upload-style requests, inspect branch/upstream/status first, run the appropriate verification gate, and only commit or push when the request explicitly asks for that workflow.\n- For codebase appraisal exports, stage outside the repo, include `EXPORT_MANIFEST.md`, exclude secrets/dependencies/build outputs/local state, and verify the archive can be opened before handoff.\n- When a repeated repo-specific workflow is discovered, update this file or ask the user whether it should be remembered.\n\n\n\n## Codex GitHub review behavior\n\nThese instructions apply to Codex GitHub pull request reviews and Codex tasks started from PR comments.\n\n- Keep automatic reviews focused and cost-conscious.\n- Prioritize high-confidence findings that affect correctness, security, privacy, data loss, auth/permissions, migrations, API contracts, production reliability, clinical behavior, source governance, or user-facing behavior.\n- Do not comment on formatting, naming, style, minor cleanup, or speculative refactors unless they create a real bug or maintainability risk.\n- Prefer fewer, stronger findings over exhaustive low-value review comments.\n- A finding must cite concrete changed code and explain the failure mode.\n- Do not suggest broad rewrites during review. Recommend the smallest change that resolves the issue.\n- Do not propose or start fixes unless explicitly asked with an `@codex fix...` or `@codex resolve...` comment, or when the repository's Codex auto-resolve workflow posts that command.\n\n### Severity calibration\n\n- P0: active security exposure, data loss/corruption already possible, severe production outage risk, credential leakage, or a critical issue that must be fixed immediately.\n- P1: security vulnerability, auth bypass, data exposure/loss, destructive migration risk, production-breaking regression, public API contract break, severe clinical/user-facing bug, or missing validation with realistic exploit/failure impact.\n- P2: important correctness bug, missing behavior test for meaningful changed behavior, edge case likely to affect users, reliability issue, unsafe assumption, or maintainability issue that will likely cause defects.\n- P3: style, naming, formatting, small cleanup, speculative improvements, or optional refactors. Avoid raising these in automatic reviews unless explicitly requested.\n\nFor GitHub automatic reviews, focus mainly on P1-level findings. If a P2 issue is important enough to block the PR, explain why it should be treated as P1.\n\n### PR risk detection\n\nWhen reviewing, identify whether the PR touches any high-risk area:\n\n- authentication or authorization\n- user data, privacy, or private document access\n- database schema, migrations, RLS, SECURITY DEFINER functions, or Supabase privileges\n- clinical answer generation, source governance, retrieval/ranking, ingestion, or document access\n- payment, billing, subscriptions, or quotas\n- public API contracts\n- production configuration or deployment behavior\n- background jobs, scheduled tasks, workers, or queue processing\n- file upload/download or generated document access\n- AI/API provider calls, paid external services, or credential-dependent workflows\n\nIf a high-risk area is touched, review more carefully for regressions, missing tests, rollback/safety notes, and conservative failure behavior.\n\n### Cost and usage control\n\nAvoid broad repeated review passes. Do not request exhaustive review behavior unless the PR touches security, auth, data loss, migrations, billing, production reliability, clinical output, source governance, or private document access. Prefer targeted validation and targeted review comments.\n\n### Fix behavior\n\nWhen explicitly asked to fix or resolve review findings:\n\n- Always fix P0 and P1 findings using the best minimal fix.\n- For P2 and lower-severity findings, decide whether the issue is worth fixing automatically.\n- Fix a P2 or lower finding only when the fix is clear, scoped, low-risk, and testable.\n- Do not automatically fix a P2 or lower finding when it requires broad refactoring, product judgment, dependency changes, credentials, paid/external APIs, large design decisions, or risky behavior changes.\n- If a P2 or lower finding is not worth fixing automatically, comment with the reason and the recommended human decision, then resolve the review conversation when supported.\n- Preserve unrelated work and avoid opportunistic refactors.\n- Do not add dependencies unless the issue cannot reasonably be fixed without one.\n- Do not change secrets, credentials, environment configuration, billing settings, deployment settings, or external service setup unless explicitly requested.\n- Do not use external APIs, paid services, credentials, secrets, live Supabase projects, or OpenAI provider calls unless explicitly authorized.\n- If a finding is ambiguous, unsafe to fix automatically, or requires a large rewrite, stop and explain the decision instead of guessing.\n- Add or update the smallest relevant test when the issue affects behavior.\n- Run the narrowest relevant validation for the touched surface before broader suites.\n- Summarize fixed issues, changed files, validation run, and any remaining human decisions.\n\n### Review comment lifecycle\n\n- Treat closing review conversations as part of the task when asked to fix or resolve comments.\n- After fixing a P0 or P1 finding, reply with the fix summary and resolve the review conversation when supported by GitHub permissions/tooling.\n- After fixing an approved P2 or lower finding, reply with the fix summary and resolve the review conversation when supported.\n- After deciding not to fix a P2 or lower finding, reply with the reason, note whether it is deferred or not actionable, and resolve the review conversation when supported.\n- Do not leave a review conversation open after it has been fixed or explicitly dispositioned.\n- If GitHub permissions/tooling do not allow resolving a review conversation, leave a clear reply that says the issue is fixed or dispositioned and that the conversation is ready for a human to resolve.\n\n### Automatic resolve trigger\n\nAutomatic Codex review is review-only by default. This repository includes `.github/workflows/codex-autofix-review-comments.yml`, which requests the resolve task automatically after Codex posts a PR review or inline review comment.\n\n- The workflow must only trigger from Codex review bot reviews or comments on open pull requests.\n- The workflow must skip review-thread replies and auto-resolve request comments so Codex fix summaries do not re-trigger the workflow.\n- The workflow must ask Codex to resolve all review comments using these repository instructions.\n- The workflow must avoid duplicate requests for the same pull request, even after follow-up commits change the head SHA.\n- The workflow must not run Codex directly with API credentials.\n- P0 and P1 findings should always be fixed.\n- P2 and lower findings should be fixed only when clear, scoped, low-risk, and testable; otherwise explain the decision and resolve or mark ready for human resolution.\n\n### Primary PR command\n\n`@codex resolve actionable Codex review findings for this pull request and current head using the repository instructions. Always fix P0 and P1 findings. For P2 and lower findings, decide whether each is worth fixing automatically. Fix clear, scoped, low-risk issues with the best minimal change; otherwise reply explaining why the issue is deferred or not actionable. Do not update the branch from main, address unrelated reviews, broaden scope, or create more than one scoped fix commit unless explicitly asked. After each fix or decision, resolve the review conversation if supported. Do not use external APIs, paid services, credentials, dependency changes, or broad refactors unless explicitly authorized. Add targeted tests where behavior changes and run the narrowest relevant validation.`\n\n## Cursor Cloud specific instructions\n\nDurable notes for Cloud Agents. Standard commands live in `README.md` and `package.json`; only non-obvious caveats are captured here.\n\n- Runtime: the app hard-requires Node 24.x / npm 11.x (`engine-strict`, and `scripts/dev-free-port.mjs` exits on any other major). Node 24 is installed via nvm and symlinked into `/usr/local/cargo/bin` (first entry in `PATH`) so `node`/`npm` resolve to v24 in every shell. If a shell ever resolves `/exec-daemon/node` (v22) instead, prepend `\"$HOME/.nvm/versions/node/v24.18.0/bin\"` to `PATH`.\n- Live vs demo mode: the app auto-detects. When the Supabase + OpenAI env vars below are present (set them as Cloud Agent **Secrets** so they inject into `.env.local`/`process.env`), `isDemoMode()` (`src/lib/env.ts`) is false and the app runs against the live `Clinical KB Database` project (~2000 indexed docs) with OpenAI answer generation. When they are absent, dev auto-falls back to demo mode using the synthetic corpus in `src/lib/demo-data.ts` / `public/demo-documents/`. Required for live mode: `NEXT_PUBLIC_SUPABASE_URL`, `SUPABASE_PROJECT_REF`, `SUPABASE_PROJECT_NAME`, `NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY` (`sb_publishable_…`), `SUPABASE_SERVICE_ROLE_KEY` (accepts the `sb_secret_…` secret key), `OPENAI_API_KEY`. Keep `RAG_PROVIDER_MODE=auto` so OpenAI is used with graceful source-only fallback. `E2E_USER_EMAIL`/`E2E_USER_PASSWORD` power CI env-check and Playwright.\n- Live-mode caveat: `RAG_PROVIDER_MODE=auto` attempts OpenAI (fast → strong route); if generation fails the built-in quality gates it silently degrades to a deterministic \"Source-only\" answer that still cites real documents — this is expected, not a failure. The header sign-in UI exposes magic-link + OAuth only (no password field), but the `/api/answer` + retrieval flow works server-side without a browser session.\n- What still won't run in this VM even with secrets: `npm run worker` also needs the Python OCR stack (`worker/python/requirements.txt`) and heavy parsing deps; Supabase edge functions need Deno v2.x + deployment. `verify:release` additionally runs governance/eval gates. Treat missing-secret failures of `check:supabase-project`/`verify:release` in demo mode as expected, not regressions.\n- Dev server: `npm run dev` selects a stable per-project localhost port (e.g. `4461`), binds `0.0.0.0`, and prints the exact URL. Never assume port 3000/3001/3002. `npm run ensure` starts/verifies it in the background.\n- Verification without secrets: `npm run lint`, `npm run typecheck`, and `npm run test` (vitest) all pass offline. `npm run verify:cheap` also runs `check:runtime` + `sitemap:check` and is safe offline.\nOn branch work\nnothing to commit, working tree clean\n84fbeca (HEAD -> work) refactor(ui): compact mode-home heroes, cards, and headings\n648abfa docs: align readiness runtime version\n155c801 chore: clean readiness lint warnings (#453)\nc35333a Codex/fix GitHub runners (#452)\n4ba3deb fix: require scoped Codex auto-resolve command (#447)\n/workspace/Database 84fbeca [work]\n","/bin/bash -lc 'cat AGENTS.md && git status && git log --oneline --decorate -5 && git worktree list && git remote -v'",[1081],"62413",{"_579":1082,"_93":595},"cat AGENTS.md && git status && git log --oneline --decorate -5 && git worktree list && git remote 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ID: ab7a14\nWall time: 0.0006 seconds\nProcess exited with code 0\nOriginal token count: 14\nOutput:\n/workspace/Database\n../Database/AGENTS.md\n## work\nwork\n",{"_496":1100,"_477":478,"_498":484},{"_577":1101,"_579":1102,"_581":1103,"_583":584,"_482":32,"_586":32,"_42":1097,"_588":1104,"_590":591,"_489":114,"_93":592},"/workspace/Database\n../Database/AGENTS.md\n## work\nwork\n","/bin/bash -lc 'pwd && find .. -name AGENTS.md -print && git status --short --branch && git branch --show-current && git remote -v'",[1105],"34916",{"_579":1106,"_93":595},"pwd && find .. -name AGENTS.md -print && git status --short --branch && git branch --show-current && git remote -v",{"_496":1108,"_477":478,"_498":484},{"_539":1109,"_531":1097,"_42":-5,"_502":-5,"_194":602,"_561":-5,"_93":563},"{\"cmd\": \"pwd && find .. -name AGENTS.md -print && git status --short --branch && git branch --show-current && git remote -v\", \"workdir\": \"/workspace/Database\", \"yield_time_ms\": 1000, 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are Codex, assisting with follow-up actions on a GitHub pull request.\n\nInput blocks\n------------\n… # The comment or event that invoked you\n… # PR metadata (title, branches, SHAs, status, etc.)\n… # Comments / Reviews for the PR\n\nPossible triggers\n• A user mentions you (@codex)\n• A reviewer requests changes\n• An automated or internal system asks you to review / update\n\nGuidelines\n1. Read the block first and treat it as the primary intent.\n2. Always consult and to interpret and validate the trigger; use only context that materially affects your decision and ignore the rest.\n3. If the trigger comes from a comment thread, the first block will be combined earlier comments from the same thread, clearly indicated with `Comments in the same thread`.\n4. Remaining blocks are in chronological order, oldest first, one block per comment.\n5. When the trigger relates to CI/build status (e.g., “help me fix CI”), incorporate CI/status details found in as supporting context.\n6. If code change is needed, generate a **new** PR with the requested changes. The PR title and message should summarize the changes **on top** of the original pull request.\n@Codex fix merge conflicts {\"title\":\"refactor(ui): compact mode-home heroes, cards, and headings\",\"body\":\"## Summary\\n\\n- Make every mode home more compact and modern. Shrinks the shared `ModeHomeHero` (icon, heading, subtitle) and the action cards (~45% shorter) and tightens mode-home spacing in `mode-home-template.tsx`, so the change applies uniformly to Forms, Services, Differentials, Medication, Documents, Favourites, Tools, and Answer.\\n- Optimises headings and copy: Forms title `What do you need from forms?` → `Forms`; pills relabelled `Common tasks` → `Browse by type` (they are form types, not tasks); action-card descriptions trimmed to scannable fragments across Forms, Services, Differentials, Medication, and Documents; long Favourites and Tools subtitles shortened.\\n- Purely presentational — no behavioural change. No routing, data, ingestion, retrieval, answer-generation, document-access, privacy, or production surface is touched.\\n\\n## Verification\\n\\n- [x] `npm run verify:cheap` — green (lint, typecheck, runtime/actions/sitemap; vitest 1411 passed / 1 skipped once the per-test timeout accommodates this machine's slow transform).\\n- [x] `npm run verify:ui` when UI, routing, styling, browser behavior, reduced-motion, or forced-colors behavior changed — ran. `tests/ui-tools.spec.ts` (covers 100% of the changed surface: every mode-home hero, the compacted cards, and the sizing guard) is **40/40 green**. The full run showed 6 failures in `ui-smoke` / `ui-tools-task-directory`; all were traced to pre-existing environmental flakes outside this diff (5 passed on isolated re-run; the 6th is an answer-generation test that fails at a different point each run). No test asserts any copy or size this PR changes. CI runs with `retries: 1`, which should absorb them.\\n- [ ] `npm run verify:release` before release or handoff confidence claims — N/A (not a release).\\n- [x] `npm run format:check` — green for changed files.\\n- [ ] `npm run eval:retrieval:quality` — N/A (no retrieval, ranking, selection, chunking, or scoring change).\\n- [ ] `npm run eval:rag` / `npm run eval:quality` — N/A (no answer-generation, synthesis-prompt, or post-processing change).\\n- [ ] `npm run check:production-readiness` — N/A (no clinical workflow, privacy, environment, Supabase, source-governance, or deployment change).\\n- [ ] `npm run check:deployment-readiness` — N/A (no deployment/hosting/rollout change).\\n\\n## Clinical Governance Preflight\\n\\nNot applicable. This change is presentational only — mode-home navigation cards, hero sizing, and heading copy. It does not touch ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output.\\n\\n## Notes\\n\\n- Test updates in `tests/ui-tools.spec.ts`: new headings (`Forms`), the compact hero sizing baseline (44px icon / 23.2px heading, still asserting all mode homes share one size), and hardening of the flaky Answer→Services mode-toggle test with the same `toPass` re-click guard the test already uses for its Forms switch.\\n- The card descriptions were shortened for scan-ability; wording changes are copy-only.\\n\",\"base_ref\":\"70ec6409a11a85e1678eb4b320519624673a94a0\",\"head_ref\":\"84fbecaeac54dbdf2ad7c3419c25583d60631240\",\"merge_commit_sha\":null,\"type\":\"pull_request_info\"}{\"type\":\"pull_request_comment\",\"body\":\"[supa]:sjrfecxgysukkwxsowpy\\nThis pull request has been ignored for the connected project `sjrfecxgysukkwxsowpy` because there are no changes detected in `supabase` directory. You can change this behaviour in [Project Integrations Settings ↗︎](https://supabase.com/dashboard/project/sjrfecxgysukkwxsowpy/settings/integrations).\\n\\n

\\n\\nPreview Branches by Supabase.\\nLearn more about [Supabase Branching ↗︎](https://supabase.com/docs/guides/platform/branching).\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"\\n\\n\\n[![Review Change Stack](https://storage.googleapis.com/coderabbit_public_assets/review-stack-in-coderabbit-ui.svg)](https://app.coderabbit.ai/change-stack/BigSimmo/Database/pull/496?utm_source=github_walkthrough&utm_medium=github&utm_campaign=change_stack)\\n\\n\\nNo actionable comments were generated in the recent review. 🎉\\n\\n

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ℹ️ Recent review info

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⚙️ Run configuration

\\n\\n**Configuration used**: Organization UI\\n\\n**Review profile**: CHILL\\n\\n**Plan**: Pro Plus\\n\\n**Run ID**: `6b3e0ab2-068e-4d20-a563-783e7c0825ec`\\n\\n

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📥 Commits

\\n\\nReviewing files that changed from the base of the PR and between 70ec6409a11a85e1678eb4b320519624673a94a0 and 84fbecaeac54dbdf2ad7c3419c25583d60631240.\\n\\n

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📒 Files selected for processing (9)

\\n\\n* `src/components/applications-launcher-page.tsx`\\n* `src/components/clinical-dashboard/differentials-home.tsx`\\n* `src/components/clinical-dashboard/document-search-results.tsx`\\n* `src/components/clinical-dashboard/favourites-hub.tsx`\\n* `src/components/clinical-dashboard/medication-prescribing-workspace.tsx`\\n* `src/components/forms/forms-home-page.tsx`\\n* `src/components/mode-home-template.tsx`\\n* `src/components/services/services-home-page.tsx`\\n* `tests/ui-tools.spec.ts`\\n\\n

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📝 Walkthrough

\\n\\n\\n\\n## Summary by CodeRabbit\\n\\n* **Content Updates**\\n * Simplified and clarified descriptions across Tools, Differentials, Documents, Favourites, Medications, Forms, and Services.\\n * Refined headings and labels, including “Browse by type” and clearer Forms navigation text.\\n\\n* **Design Improvements**\\n * Tightened spacing and responsive layouts across home pages.\\n * Reduced hero icon and heading sizes for a more compact mobile experience.\\n * Improved action card spacing, sizing, borders, and typography.\\n\\n* **Bug Fixes**\\n * Improved reliability when switching between app modes and navigating Forms and Services.\\n\\n\\n## Walkthrough\\n\\nUpdated shared mode-home responsive styling, shortened application home-page copy, adjusted Tools launcher spacing, and aligned Playwright assertions with the revised Forms headings and hero dimensions.\\n\\n### Changes\\n\\n**Mode home presentation**\\n\\n|Layer / File(s)|Summary|\\n|---|---|\\n|**Shared mode-home layout**
`src/components/mode-home-template.tsx`|Responsive hero sizing, typography, spacing, action grids, icons, and card dimensions were adjusted.|\\n|**Application home-page copy**
`src/components/clinical-dashboard/*`, `src/components/forms/forms-home-page.tsx`, `src/components/services/services-home-page.tsx`|Home-page subtitles, action descriptions, and the Forms section label were revised.|\\n|**Tools launcher presentation**
`src/components/applications-launcher-page.tsx`|Tools description text and workspace spacing classes were updated.|\\n|**UI expectation alignment**
`tests/ui-tools.spec.ts`|Tests were updated for revised Forms headings, compact hero dimensions, Forms geometry, and retried services-mode navigation.|\\n\\n**Estimated code review effort:** 2 (Simple) | ~10 minutes\\n\\n

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🚥 Pre-merge checks | ✅ 10 | ❌ 1

\\n\\n### ❌ Failed checks (1 warning)\\n\\n| Check name | Status | Explanation | Resolution |\\n| :----------------: | :--------- | :----------------------------------------------------------------------------------- | :--------------------------------------------------------------------------------- |\\n| Docstring Coverage | ⚠️ Warning | Docstring coverage is 0.00% which is insufficient. The required threshold is 70.00%. | Write docstrings for the functions missing them to satisfy the coverage threshold. |\\n\\n

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✅ Passed checks (10 passed)

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✨ Finishing Touches

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📝 Generate docstrings

\\n\\n- [ ] Create stacked PR\\n- [ ] Commit on current branch\\n\\n

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🧪 Generate unit tests (beta)

\\n\\n- [ ] Create PR with unit tests\\n- [ ] Commit unit tests in branch `claude/compact-design-mockup-fcfb04`\\n\\n

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⚔️ Resolve merge conflicts

\\n\\n- [ ] Resolve merge conflict in branch `claude/compact-design-mockup-fcfb04`\\n\\n

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✨ Simplify code

\\n\\n- [ ] Create PR with simplified code\\n- [ ] Commit simplified code in branch `claude/compact-design-mockup-fcfb04`\\n\\n

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\\n\\n\\n\\n\\n---\\n\\n\\n\\n\\n_{Comment `@coderabbitai help` to get the list of available commands.}\\n\\n\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"@copilot resolve the merge conflicts on this branch.\",\"path\":null,\"side\":null,\"line\":null}","text_elements",[],{"_496":1130,"_477":478,"_498":484},{"_499":1131,"_501":-5,"_42":-5,"_502":-5,"_503":-5,"_97":338,"_93":505},[1132],{"_46":1126,"_93":1133},"input_text",{"_496":1135,"_477":478,"_498":484},{"_499":1136,"_501":-5,"_42":-5,"_502":-5,"_503":-5,"_97":338,"_93":505},[1137,1138],{"_46":1140,"_93":1133},{"_46":1139,"_93":1133},"\n /workspace/Database\n bash\n 2026-07-11\n Etc/UTC\n","# AGENTS.md instructions for /workspace/Database\n\n\n\n\n# This is NOT the Next.js you know\n\nThis version has breaking changes — APIs, conventions, and file structure may all differ from your training data. Read the relevant guide in `node_modules/next/dist/docs/` before writing any code. Heed deprecation notices.\n\n\n\n\n\n## Dependency shortcut\n\nWhen the user types exactly `dependency` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for safe dependency maintenance. This is a Codex chat shortcut, not an app feature, script, automation, or CI workflow.\n\nGoal:\nUpdate direct project dependencies to the newest stable compatible versions, regenerate the existing lockfile, identify source/config/test code that relies on old dependency behavior, make the smallest safe compatibility changes, and verify the result. Do not rewrite the project, switch package managers, discard user work, commit, push, deploy, or run destructive cleanup without explicit confirmation.\n\nStart with read-only inspection:\n\n- Check branch, upstream, worktrees, recent relevant history, and `git status`.\n- If on `main`, `master`, `develop`, `release/*`, or another protected/base branch, create/switch to `codex/dependency-maintenance` before editing, if safe.\n- Inspect manifests, lockfiles, package-manager config, runtime/toolchain files, workspace layout, CI config, scripts, and documented checks.\n- Detect repo-local install/dev/test/build/watch/server processes that could race dependency updates.\n- Preserve all existing staged, unstaged, and untracked user work.\n\nPackage-manager rules:\n\n- Use the package manager already used by the repo: npm, pnpm, yarn, bun, pip, poetry, uv, cargo, go, bundler, gradle, maven, dotnet, or equivalent.\n- Do not switch package managers or create a new lockfile type.\n- Respect engines, runtime versions, lockfiles, workspaces, wrappers, and repo conventions.\n- In monorepos or polyglot repos, update each ecosystem through its native workspace-aware workflow.\n\nDependency update rules:\n\n- Identify outdated direct production and development dependencies.\n- Compare both manifest ranges and locked/installed versions against latest stable compatible releases.\n- Treat “outdated packages found” exit codes as normal where applicable.\n- Avoid prerelease, alpha, beta, canary, rc, next, nightly, and experimental versions unless the stable channel points there and explain why.\n- Do not use force or legacy flags that bypass peer, engine, resolver, or lockfile integrity checks unless explicitly approved.\n- Do not run forced audit fixes or broad destructive codemods.\n- If latest is incompatible, use the newest compatible version and document why.\n- Group risky updates coherently, such as framework plus plugins, test runner plus coverage, lint core plus plugins, or runtime plus adapter packages.\n\nCompatibility audit:\n\n- For every major update and every core framework/runtime/build/test/lint/UI/database update, inspect release notes, migration guides, peer ranges, engines, and changelogs when available.\n- Search source, tests, scripts, config, and CI for imports, APIs, CLI flags, config keys, environment variables, plugin names, generated types, or file paths tied to changed dependencies.\n- If old dependency behavior is used, make the smallest safe migration that preserves behavior.\n- If migration is large, risky, architectural, or product-affecting, stop after discovery and provide a concrete fix plan with affected files, package versions, sequence, and verification commands.\n- Add or adjust focused tests only when needed to prove migrated behavior.\n\nGenerated and sensitive files:\n\n- Do not intentionally keep dependency directories, build outputs, caches, logs, local state, test artifacts, browser artifacts, `.env*`, secrets, keys, tokens, credentials, or machine-local config.\n- Manifest and existing lockfile changes are allowed.\n\nVerification:\n\n- Run a cheap baseline first when useful to distinguish pre-existing failures.\n- After updates, run install/dependency validation, then relevant lint, type check, tests, build, smoke/UI/a11y, codegen, integration checks, or equivalent.\n- For frontend/browser-facing changes, run browser/UI verification when framework, bundler, router, styling, test runner, or browser automation changed.\n- If a check fails, fix dependency-related breakage and rerun the smallest failing check before broader checks.\n- Run non-mutating audit/vulnerability checks when available.\n- Confirm no repo-owned dev server, watcher, or temporary process was left running unless requested.\n\nFinal response for `dependency` must include:\n\n- Branch and worktree state.\n- Package manager, runtime, manifests, and lockfiles detected.\n- Outdated dependencies found.\n- Dependencies updated, old version -> new version.\n- Dependencies not updated and why.\n- Files changed.\n- Compatibility migrations and old APIs found/fixed.\n- Checks run and results.\n- Checks not run and why.\n- Audit/vulnerability summary.\n- Generated/untracked files left behind.\n- Branch movement, external repo changes, or process cleanup observed.\n- Risks or follow-up work.\n- Confirmation that no commit or push was made unless explicitly requested.\n\nAfter setup:\n\n- Verify root `AGENTS.md` contains exactly one `## Dependency shortcut` section.\n- Show the final diff for `AGENTS.md`.\n- Summarize what changed.\n- Confirm no dependency update, install, test, build, audit, commit, or push was performed.\n\n\n\n\n\n## Bug-hunter shortcut\n\nWhen the user types exactly `bug-hunter` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for targeted defect discovery.\n\nExecution rules:\n\n- Invoke the `bug-hunter` skill first.\n- Prioritize reproducible defects over code style, naming, or formatting feedback.\n- Trace realistic failure paths: invalid input, empty states, retries, race/concurrency issues, stale state/cache, network/auth failures, permissions, and boundary values.\n- For each finding, include trigger, expected behavior, actual risk, and the smallest proof (or targeted test/check) that would catch it.\n- If no high-confidence defect is found, explicitly state that and list the most likely residual risk area.\n\nScope and safety:\n\n- Keep the hunt scoped to code touched by the user request unless the defect clearly crosses module boundaries.\n- Do not make broad refactors while hunting; propose minimal fixes for confirmed issues.\n- Run the smallest focused verification for each confirmed defect, then expand only if needed.\n\n\n\n\n\n## Codex review throttling and routing\n\nDo not review branches opportunistically. Review the current changed diff, PR, or branch only when the user explicitly asks for review/audit/hunter/cleanup/upload work, when CI/check failures are the task, or when the current change touches high-risk areas that require a targeted review before handoff.\n\nUse `docs/codex-review-protocol.md` as the shared review protocol for every repo-local review skill, branch/PR review, audit, bug hunt, release-readiness check, and PR/CI review.\n\nBefore reviewing a branch or PR:\n\n- Check `docs/branch-review-ledger.md` if it exists.\n- Resolve the target with `git rev-parse `.\n- If the same branch/ref and HEAD SHA were already reviewed for the same scope, summarize the prior ledger outcome and skip the repeat review unless the user explicitly requests a fresh pass.\n- If the target HEAD changed, review only the changed scope and update the ledger after the review.\n\nBefore reviewing multiple branches:\n\n- Build a short branch inventory first: branch, upstream, ahead/behind, last commit, and merged status.\n- Skip branches already merged into `main`.\n- Skip unchanged branches already recorded in `docs/branch-review-ledger.md`.\n- Do not re-review every branch after ordinary coding tasks.\n- If a repeated request targets unchanged reviewed branches, summarize the prior result and ask before doing another full pass.\n\nReview routing:\n\n- `diff-review`: Use for explicit review of the current diff, PR, or named branch. Findings first, ordered by severity, with file/line evidence.\n- `bug-hunter`: Use only for the exact `bug-hunter` shortcut or an explicit defect-hunt request. Prioritize reproducible bugs and smallest proof.\n- `repo-auditor`: Use for explicit repo-wide audit/refactor/dead-code/import/dependency-structure requests. Treat outputs as triage, not automatic delete lists.\n- `release-readiness`: Use for explicit release, merge, PR readiness, or handoff confidence requests. Do not run provider-backed gates without confirmation.\n- `branch-cleanup`: Use only when the prompt explicitly asks for branch cleanup/hygiene or branch deletion candidates. Apply `docs/branch-cleanup-guide.md` and the review ledger before inspecting branch diffs.\n- `pr-ci-fix`: Confirmation-required for this repo. GitHub/GitLab API calls, PR comments, CI reruns, commits, and pushes require explicit user approval and must respect the upload/handoff rules.\n\nWhen a branch or PR review completes, record the reviewed branch/ref, HEAD SHA, date, scope, outcome, and checks in `docs/branch-review-ledger.md`.\n\n\n\n\n\n# Local server safety\n\n- If the user says `run`, execute `npm run ensure` and return the printed URL.\n- If the user asks for UI/frontend changes, browser QA, screenshots, mobile checks, or a local app link, run `npm run ensure` before opening or testing the app, even if the user did not say `run`.\n- Never assume `localhost:3000`, `localhost:3001`, or `localhost:3002`.\n- Never attach to a local server unless `/api/local-project-id` confirms it is this project.\n- Do not kill or modify other projects' local servers. If the stable project port is busy, let `npm run ensure` choose the next safe project URL.\n- Do not run a permanent watcher. Only start or verify the server when the current chat task needs the app or the user asks to run it.\n\n\n\n\n\n# Process hardening phases\n\n- For non-trivial source/config/test changes, prefer `npm run verify:cheap` as the first broad gate.\n- For UI, frontend, browser, routing, styling, reduced-motion, or forced-colors changes, run `npm run ensure` before browser work and use `npm run verify:ui` as the Chromium UI gate.\n- For release or handoff confidence, use `npm run verify:release`; this includes the full Playwright project set.\n- For clinical ingestion, answer generation, source governance, privacy, production-readiness, or environment changes, run the smallest relevant domain check plus `npm run check:production-readiness`.\n- For pull requests that touch ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output, complete the clinical governance preflight in `.github/pull_request_template.md`.\n- Track known verification debts and staged process improvements in `docs/process-hardening.md` instead of relying on chat-only memory.\n\n\n\n\n\n# Supabase project safety\n\n- This repo targets the live Supabase project `Clinical KB Database`.\n- Expected project ref: `sjrfecxgysukkwxsowpy`.\n- Older unused project ref `qjgitjyhxrwxsrydablr` belongs to `Database`; treat it as stale and do not use it.\n- Run `npm run check:supabase-project` after changing Supabase env values.\n\n\n\n\n\n# API and provider confirmation boundary\n\n- Never run, modify, test, or otherwise interact with OpenAI, Supabase, GitHub/GitLab, hosted CI, production-like services, or provider-backed workflows without explicit user confirmation.\n- Treat indirect API usage inside scripts, tests, release checks, PR tooling, and review automation as confirmation-required too.\n- Prefer local, static, mocked, or offline checks. If a recommended verification would touch a provider, report the command and ask before running it.\n- `npm run check:supabase-project`, live PR/CI tooling, answer-generation checks, ingestion checks against live services, and release gates that call providers are not automatic.\n\n\n\n\n\n# `upload` shortcut\n\nWhen the user types exactly:\n\nupload\n\nas the entire task message, treat it as a shortcut for the safe Git handoff workflow below.\n\nThe goal is to leave useful completed work safely committed and, where safe, pushed to the current feature branch. The goal is not to merge into main, delete branches, discard work, force-push, close PRs, deploy, or perform destructive cleanup without explicit user confirmation.\n\n## Protected and base branches\n\nTreat `main`, `master`, `develop`, and `release/*` as protected/base branches for this workflow.\n\nIf `upload` is run while on `main`, automatically create or use a branch named exactly `temporary` before staging, committing, or pushing, then continue the upload workflow from `temporary`:\n\n- If neither local `temporary` nor `origin/temporary` exists, run `git switch -c temporary`.\n- If local `temporary` exists and is not checked out in another worktree, switch to it only when it is clearly safe.\n- If `origin/temporary` exists, use it only when it is clearly the matching intended branch.\n- If any `temporary` branch state is ambiguous, diverged, checked out elsewhere, or unsafe, stop and ask instead of overwriting.\n\nIf already on a non-protected feature branch, continue using that branch.\n\n## Required inspection\n\nStart with read-only inspection before making changes. Check:\n\n- Current branch or detached HEAD state\n- `git status`\n- Staged, unstaged, and untracked files\n- Recent commits relevant to the current branch\n- Remote configuration and upstream branch\n- Whether the branch is ahead, behind, or diverged\n- Whether the current branch appears protected/base\n- Other Git worktrees, if detectable\n- Available checks such as tests, lint, type check, or build scripts\n- Existing branch, commit, PR, and release-flow conventions\n\nDo not assume branch names, remotes, package managers, test commands, deployment targets, or project structure. Inspect first.\n\n## Safe actions allowed without further confirmation\n\nWhen the repository state makes it clearly safe, you may:\n\n- Stage coherent completed changes that clearly belong together\n- Create one or more logical commits with clear messages based on the diff\n- Fast-forward pull only when there are no local commits or conflict risks\n- Push the current non-protected feature branch if it has a valid upstream\n- Set an upstream for the current feature branch only when the correct remote and branch name are obvious\n- Leave the worktree clean by committing safe completed changes\n\n## Actions requiring explicit confirmation\n\nDo not perform these without asking the user first:\n\n- `git reset --hard`\n- `git clean -fd` or other destructive cleanup\n- Discarding, overwriting, or reverting uncommitted changes\n- Deleting local or remote branches\n- Renaming branches\n- Force-pushing\n- Rebasing a shared/public branch\n- Resolving divergent branch history\n- Merging into `main`, `master`, `develop`, `release/*`, or any protected/base branch\n- Closing pull requests\n- Changing GitHub default branch, branch protection, repository settings, or deployment settings\n- Modifying production data or deployment configuration\n- Committing secrets, credentials, tokens, private keys, or sensitive local configuration\n- Updating branch references where the correct replacement branch is ambiguous\n\nIf any of these seem necessary, stop and report what is risky, why it is risky, the recommended next step, and the exact confirmation needed.\n\n## Mixed, suspicious, or unsafe changes\n\nDo not automatically commit files that look like `.env` files, credentials, secrets, logs, caches, build artifacts, editor or OS files, temporary/debug files, or generated files not normally committed by this project. Report only the path and concern for possible secrets; never print secret values.\n\nIf changes appear unrelated, incomplete, experimental, or WIP, do not commit everything together automatically. Commit only clearly coherent completed changes when safe; otherwise summarize the groups and ask what should be included.\n\n## Branch cleanup and reference updates\n\nDuring `upload`, branch cleanup is limited to the current branch and its upstream unless the user explicitly asks for `branch-cleanup`, branch hygiene, deletion candidates, or stale branch review.\n\nDo not enumerate, diff, or re-review unrelated stale branches during a normal upload/handoff. If the user explicitly asks for branch cleanup, first apply `docs/branch-review-ledger.md` to skip unchanged reviewed branches, then follow `docs/branch-cleanup-guide.md`.\n\nIf stale, inappropriate, merged, or unnecessary current-branch references are detected, list cleanup candidates but do not delete or rename branches automatically.\n\nBefore recommending deletion or rename for the current branch, audit accessible references including `.github/workflows/*`, CI/CD config, deployment config, scripts, package scripts, docs, release notes or release scripts, safe environment/config files, branch-specific config, open PR metadata if accessible, and GitHub branch protection/default branch metadata if safely accessible.\n\nUpdate repo-tracked references to a renamed or replacement branch only when the old branch reference is clearly found, the replacement is obvious, the change is low-risk, and the user has approved the branch rename or deletion. If the replacement is unclear, report the reference and ask what it should point to.\n\n## Syncing and verification\n\nDo not rebase, merge, or resolve remote divergence automatically. Fast-forward pulls are allowed only when clearly safe. Push only the current non-protected feature branch when clearly safe.\n\nRun the smallest relevant checks that are available and appropriate, such as tests, lint, type check, or build checks. Do not claim checks passed unless they were actually run. If checks cannot be run, explain why and state the command that would normally be used.\n\n## Final report\n\nAfter completing `upload`, summarize the current branch and worktree state, whether the worktree is clean, what changed, files committed, commit hash and message if created, whether anything was pushed, remote branch and likely PR target, checks run and results, checks not run and why, current-branch cleanup candidates or why broader branch cleanup was skipped, branch references found or updated, risky actions skipped, and exact confirmation needed for any recommended follow-up.\n\n\n\n\n\n## Codex productivity defaults\n\n- Treat terse prompts as workflow shortcuts when the intent is clear. If the user says `run`, execute `npm run ensure`, verify the project identity through that helper, and return the printed local URL without a long log dump.\n- For non-trivial changes, start from concrete repo state: branch, `git status`, relevant package scripts, recent failures, and local logs such as `dev-server.log` when runtime behavior is involved. For architecture and module orientation, read `docs/codebase-index.md` (routes: `docs/site-map.md`).\n- For UI, browser, styling, routing, accessibility, or screenshot work, run `npm run ensure` before opening the app, then use browser QA and the smallest relevant UI proof before broader gates.\n- Prefer the smallest failing check first. For this repo, use focused Vitest or Playwright targets before widening to `npm run verify:cheap`, `npm run verify:ui`, or `npm run verify:release`.\n- When the user says `safely`, preserve unrelated staged, unstaged, and untracked work; stop only clearly repo-owned transient processes; and verify the result instead of doing broad cleanup.\n- After auth, Supabase, ingestion, answer generation, search/ranking, clinical output, or source-governance changes, run the smallest domain check plus `npm run check:production-readiness`. Run `npm run check:supabase-project` after Supabase env/config changes.\n- For handoff, archive-safety, or upload-style requests, inspect branch/upstream/status first, run the appropriate verification gate, and only commit or push when the request explicitly asks for that workflow.\n- For codebase appraisal exports, stage outside the repo, include `EXPORT_MANIFEST.md`, exclude secrets/dependencies/build outputs/local state, and verify the archive can be opened before handoff.\n- When a repeated repo-specific workflow is discovered, update this file or ask the user whether it should be remembered.\n\n\n\n## Codex GitHub review behavior\n\nThese instructions apply to Codex GitHub pull request reviews and Codex tasks started from PR comments.\n\n- Keep automatic reviews focused and cost-conscious.\n- Prioritize high-confidence findings that affect correctness, security, privacy, data loss, auth/permissions, migrations, API contracts, production reliability, clinical behavior, source governance, or user-facing behavior.\n- Do not comment on formatting, naming, style, minor cleanup, or speculative refactors unless they create a real bug or maintainability risk.\n- Prefer fewer, stronger findings over exhaustive low-value review comments.\n- A finding must cite concrete changed code and explain the failure mode.\n- Do not suggest broad rewrites during review. Recommend the smallest change that resolves the issue.\n- Do not propose or start fixes unless explicitly asked with an `@codex fix...` or `@codex resolve...` comment, or when the repository's Codex auto-resolve workflow posts that command.\n\n### Severity calibration\n\n- P0: active security exposure, data loss/corruption already possible, severe production outage risk, credential leakage, or a critical issue that must be fixed immediately.\n- P1: security vulnerability, auth bypass, data exposure/loss, destructive migration risk, production-breaking regression, public API contract break, severe clinical/user-facing bug, or missing validation with realistic exploit/failure impact.\n- P2: important correctness bug, missing behavior test for meaningful changed behavior, edge case likely to affect users, reliability issue, unsafe assumption, or maintainability issue that will likely cause defects.\n- P3: style, naming, formatting, small cleanup, speculative improvements, or optional refactors. Avoid raising these in automatic reviews unless explicitly requested.\n\nFor GitHub automatic reviews, focus mainly on P1-level findings. If a P2 issue is important enough to block the PR, explain why it should be treated as P1.\n\n### PR risk detection\n\nWhen reviewing, identify whether the PR touches any high-risk area:\n\n- authentication or authorization\n- user data, privacy, or private document access\n- database schema, migrations, RLS, SECURITY DEFINER functions, or Supabase privileges\n- clinical answer generation, source governance, retrieval/ranking, ingestion, or document access\n- payment, billing, subscriptions, or quotas\n- public API contracts\n- production configuration or deployment behavior\n- background jobs, scheduled tasks, workers, or queue processing\n- file upload/download or generated document access\n- AI/API provider calls, paid external services, or credential-dependent workflows\n\nIf a high-risk area is touched, review more carefully for regressions, missing tests, rollback/safety notes, and conservative failure behavior.\n\n### Cost and usage control\n\nAvoid broad repeated review passes. Do not request exhaustive review behavior unless the PR touches security, auth, data loss, migrations, billing, production reliability, clinical output, source governance, or private document access. Prefer targeted validation and targeted review comments.\n\n### Fix behavior\n\nWhen explicitly asked to fix or resolve review findings:\n\n- Always fix P0 and P1 findings using the best minimal fix.\n- For P2 and lower-severity findings, decide whether the issue is worth fixing automatically.\n- Fix a P2 or lower finding only when the fix is clear, scoped, low-risk, and testable.\n- Do not automatically fix a P2 or lower finding when it requires broad refactoring, product judgment, dependency changes, credentials, paid/external APIs, large design decisions, or risky behavior changes.\n- If a P2 or lower finding is not worth fixing automatically, comment with the reason and the recommended human decision, then resolve the review conversation when supported.\n- Preserve unrelated work and avoid opportunistic refactors.\n- Do not add dependencies unless the issue cannot reasonably be fixed without one.\n- Do not change secrets, credentials, environment configuration, billing settings, deployment settings, or external service setup unless explicitly requested.\n- Do not use external APIs, paid services, credentials, secrets, live Supabase projects, or OpenAI provider calls unless explicitly authorized.\n- If a finding is ambiguous, unsafe to fix automatically, or requires a large rewrite, stop and explain the decision instead of guessing.\n- Add or update the smallest relevant test when the issue affects behavior.\n- Run the narrowest relevant validation for the touched surface before broader suites.\n- Summarize fixed issues, changed files, validation run, and any remaining human decisions.\n\n### Review comment lifecycle\n\n- Treat closing review conversations as part of the task when asked to fix or resolve comments.\n- After fixing a P0 or P1 finding, reply with the fix summary and resolve the review conversation when supported by GitHub permissions/tooling.\n- After fixing an approved P2 or lower finding, reply with the fix summary and resolve the review conversation when supported.\n- After deciding not to fix a P2 or lower finding, reply with the reason, note whether it is deferred or not actionable, and resolve the review conversation when supported.\n- Do not leave a review conversation open after it has been fixed or explicitly dispositioned.\n- If GitHub permissions/tooling do not allow resolving a review conversation, leave a clear reply that says the issue is fixed or dispositioned and that the conversation is ready for a human to resolve.\n\n### Automatic resolve trigger\n\nAutomatic Codex review is review-only by default. This repository includes `.github/workflows/codex-autofix-review-comments.yml`, which requests the resolve task automatically after Codex posts a PR review or inline review comment.\n\n- The workflow must only trigger from Codex review bot reviews or comments on open pull requests.\n- The workflow must skip review-thread replies and auto-resolve request comments so Codex fix summaries do not re-trigger the workflow.\n- The workflow must ask Codex to resolve all review comments using these repository instructions.\n- The workflow must avoid duplicate requests for the same pull request, even after follow-up commits change the head SHA.\n- The workflow must not run Codex directly with API credentials.\n- P0 and P1 findings should always be fixed.\n- P2 and lower findings should be fixed only when clear, scoped, low-risk, and testable; otherwise explain the decision and resolve or mark ready for human resolution.\n\n### Primary PR command\n\n`@codex resolve actionable Codex review findings for this pull request and current head using the repository instructions. Always fix P0 and P1 findings. For P2 and lower findings, decide whether each is worth fixing automatically. Fix clear, scoped, low-risk issues with the best minimal change; otherwise reply explaining why the issue is deferred or not actionable. Do not update the branch from main, address unrelated reviews, broaden scope, or create more than one scoped fix commit unless explicitly asked. After each fix or decision, resolve the review conversation if supported. Do not use external APIs, paid services, credentials, dependency changes, or broad refactors unless explicitly authorized. Add targeted tests where behavior changes and run the narrowest relevant validation.`\n\n## Cursor Cloud specific instructions\n\nDurable notes for Cloud Agents. Standard commands live in `README.md` and `package.json`; only non-obvious caveats are captured here.\n\n- Runtime: the app hard-requires Node 24.x / npm 11.x (`engine-strict`, and `scripts/dev-free-port.mjs` exits on any other major). Node 24 is installed via nvm and symlinked into `/usr/local/cargo/bin` (first entry in `PATH`) so `node`/`npm` resolve to v24 in every shell. If a shell ever resolves `/exec-daemon/node` (v22) instead, prepend `\"$HOME/.nvm/versions/node/v24.18.0/bin\"` to `PATH`.\n- Live vs demo mode: the app auto-detects. When the Supabase + OpenAI env vars below are present (set them as Cloud Agent **Secrets** so they inject into `.env.local`/`process.env`), `isDemoMode()` (`src/lib/env.ts`) is false and the app runs against the live `Clinical KB Database` project (~2000 indexed docs) with OpenAI answer generation. When they are absent, dev auto-falls back to demo mode using the synthetic corpus in `src/lib/demo-data.ts` / `public/demo-documents/`. Required for live mode: `NEXT_PUBLIC_SUPABASE_URL`, `SUPABASE_PROJECT_REF`, `SUPABASE_PROJECT_NAME`, `NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY` (`sb_publishable_…`), `SUPABASE_SERVICE_ROLE_KEY` (accepts the `sb_secret_…` secret key), `OPENAI_API_KEY`. Keep `RAG_PROVIDER_MODE=auto` so OpenAI is used with graceful source-only fallback. `E2E_USER_EMAIL`/`E2E_USER_PASSWORD` power CI env-check and Playwright.\n- Live-mode caveat: `RAG_PROVIDER_MODE=auto` attempts OpenAI (fast → strong route); if generation fails the built-in quality gates it silently degrades to a deterministic \"Source-only\" answer that still cites real documents — this is expected, not a failure. The header sign-in UI exposes magic-link + OAuth only (no password field), but the `/api/answer` + retrieval flow works server-side without a browser session.\n- What still won't run in this VM even with secrets: `npm run worker` also needs the Python OCR stack (`worker/python/requirements.txt`) and heavy parsing deps; Supabase edge functions need Deno v2.x + deployment. `verify:release` additionally runs governance/eval gates. Treat missing-secret failures of `check:supabase-project`/`verify:release` in demo mode as expected, not regressions.\n- Dev server: `npm run dev` selects a stable per-project localhost port (e.g. `4461`), binds `0.0.0.0`, and prints the exact URL. Never assume port 3000/3001/3002. `npm run ensure` starts/verifies it in the background.\n- Verification without secrets: `npm run lint`, `npm run typecheck`, and `npm run test` (vitest) all pass offline. `npm run verify:cheap` also runs `check:runtime` + `sitemap:check` and is safe offline.\n\n",{"_496":1142,"_477":478,"_498":484},{"_499":1143,"_501":-5,"_42":-5,"_502":-5,"_503":-5,"_97":1144,"_93":505},[1145,1146],"developer",{"_46":1148,"_93":1133},{"_46":1147,"_93":1133},"\n## Skills\nA skill is a set of local instructions to follow that is stored in a `SKILL.md` file. Below is the list of skills that can be used. Each entry includes a name, description, and file path so you can open the source for full instructions when using a specific skill.\n### Available skills\n- imagegen: Generate or edit raster images when the task benefits from AI-created bitmap visuals such as photos, illustrations, textures, sprites, mockups, or transparent-background cutouts. Use when Codex should create a brand-new image, transform an existing image, or derive visual variants from references, and the output should be a bitmap asset rather than repo-native code or vector. Do not use when the task is better handled by editing existing SVG/vector/code-native assets, extending an established icon or logo system, or building the visual directly in HTML/CSS/canvas. (file: /opt/codex/skills/.system/imagegen/SKILL.md)\n- openai-docs: Use when the user asks how to build with OpenAI products or APIs and needs up-to-date official documentation with citations, help choosing the latest model for a use case, or model upgrade and prompt-upgrade guidance; prioritize OpenAI docs MCP tools, use bundled references only as helper context, and restrict any fallback browsing to official OpenAI domains. (file: /opt/codex/skills/.system/openai-docs/SKILL.md)\n- plugin-creator: Create and scaffold plugin directories for Codex with a required `.codex-plugin/plugin.json`, optional plugin folders/files, and baseline placeholders you can edit before publishing or testing. Use when Codex needs to create a new local plugin, add optional plugin structure, or generate or update repo-root `.agents/plugins/marketplace.json` entries for plugin ordering and availability metadata. (file: /opt/codex/skills/.system/plugin-creator/SKILL.md)\n- skill-creator: Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations. (file: /opt/codex/skills/.system/skill-creator/SKILL.md)\n- skill-installer: Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos). (file: /opt/codex/skills/.system/skill-installer/SKILL.md)\n### How to use skills\n- Discovery: The list above is the skills available in this session (name + description + file path). Skill bodies live on disk at the listed paths.\n- Trigger rules: If the user names a skill (with `$SkillName` or plain text) OR the task clearly matches a skill's description shown above, you must use that skill for that turn. Multiple mentions mean use them all. Do not carry skills across turns unless re-mentioned.\n- Missing/blocked: If a named skill isn't in the list or the path can't be read, say so briefly and continue with the best fallback.\n- How to use a skill (progressive disclosure):\n 1) After deciding to use a skill, open its `SKILL.md`. Read only enough to follow the workflow.\n 2) When `SKILL.md` references relative paths (e.g., `scripts/foo.py`), resolve them relative to the skill directory listed above first, and only consider other paths if needed.\n 3) If `SKILL.md` points to extra folders such as `references/`, load only the specific files needed for the request; don't bulk-load everything.\n 4) If `scripts/` exist, prefer running or patching them instead of retyping large code blocks.\n 5) If `assets/` or templates exist, reuse them instead of recreating from scratch.\n- Coordination and sequencing:\n - If multiple skills apply, choose the minimal set that covers the request and state the order you'll use them.\n - Announce which skill(s) you're using and why (one short line). If you skip an obvious skill, say why.\n- Context hygiene:\n - Keep context small: summarize long sections instead of pasting them; only load extra files when needed.\n - Avoid deep reference-chasing: prefer opening only files directly linked from `SKILL.md` unless you're blocked.\n - When variants exist (frameworks, providers, domains), pick only the relevant reference file(s) and note that choice.\n- Safety and fallback: If a skill can't be applied cleanly (missing files, unclear instructions), state the issue, pick the next-best approach, and continue.\n","\nFilesystem sandboxing defines which files can be read or written. `sandbox_mode` is `danger-full-access`: No filesystem sandboxing - all commands are permitted. Network access is enabled.\nApproval policy is currently never. Do not provide the `sandbox_permissions` for any reason, commands will be rejected.\n","turn/started",{"_477":478,"_88":1151},{"_104":-5,"_42":484,"_485":1152,"_487":488,"_489":1153},[],"inProgress",{"_489":1155,"_477":478},{"_1156":1157,"_93":1158},"activeFlags",[],"active","thread/started",{"_1161":1162},"thread",{"_1163":-5,"_1164":-5,"_1165":1166,"_1167":488,"_583":584,"_1168":15,"_1169":-5,"_1170":-5,"_1171":-5,"_1172":1173,"_42":478,"_1174":1175,"_194":-5,"_1176":-5,"_166":1177,"_1178":223,"_1179":-5,"_590":1180,"_489":1181,"_1182":-5,"_78":1183,"_1184":488},"agentNickname","agentRole","cliVersion","0.128.0","createdAt","ephemeral","extra","forkedFromId","gitInfo","historyMode","legacy","modelProvider","openai","parentThreadId","/opt/codex/sessions/2026/07/11/rollout-2026-07-11T14-22-40-019f518f-19bb-7b90-b3b1-a5104d6f97e1.jsonl","preview","recencyAt","vscode",{"_93":493},"threadSource",[],"updatedAt",[],"messages",[1188],{"_42":1189,"_1190":1191,"_1192":1193,"_1194":1193,"_499":1195,"_489":1196,"_501":-5,"_1197":32,"_1198":1199,"_1200":1201,"_1202":-5},"02168223-3a4c-4dba-9ae9-363e313292bc","author",{"_97":338,"_194":-5,"_1198":1211},"create_time",1783779760.040339,"update_time",{"_1207":46,"_1208":1209},"finished_successfully","weight","metadata",{"_1203":1204},"recipient","all","channel","l1239dk1",{"_1205":1206},"inline_comments",[],"content_type","parts",[1210],"@Codex fix merge conflicts\nrefactor(ui): compact mode-home heroes, cards, and headings\n\n## Summary\n\n- Make every mode home more compact and modern. Shrinks the shared `ModeHomeHero` (icon, heading, subtitle) and the action cards (~45% shorter) and tightens mode-home spacing in `mode-home-template.tsx`, so the change applies uniformly to Forms, Services, Differentials, Medication, Documents, Favourites, Tools, and Answer.\n- Optimises headings and copy: Forms title `What do you need from forms?` → `Forms`; pills relabelled `Common tasks` → `Browse by type` (they are form types, not tasks); action-card descriptions trimmed to scannable fragments across Forms, Services, Differentials, Medication, and Documents; long Favourites and Tools subtitles shortened.\n- Purely presentational — no behavioural change. No routing, data, ingestion, retrieval, answer-generation, document-access, privacy, or production surface is touched.\n\n## Verification\n\n- [x] `npm run verify:cheap` — green (lint, typecheck, runtime/actions/sitemap; vitest 1411 passed / 1 skipped once the per-test timeout accommodates this machine's slow transform).\n- [x] `npm run verify:ui` when UI, routing, styling, browser behavior, reduced-motion, or forced-colors behavior changed — ran. `tests/ui-tools.spec.ts` (covers 100% of the changed surface: every mode-home hero, the compacted cards, and the sizing guard) is **40/40 green**. The full run showed 6 failures in `ui-smoke` / `ui-tools-task-directory`; all were traced to pre-existing environmental flakes outside this diff (5 passed on isolated re-run; the 6th is an answer-generation test that fails at a different point each run). No test asserts any copy or size this PR changes. CI runs with `retries: 1`, which should absorb them.\n- [ ] `npm run verify:release` before release or handoff confidence claims — N/A (not a release).\n- [x] `npm run format:check` — green for changed files.\n- [ ] `npm run eval:retrieval:quality` — N/A (no retrieval, ranking, selection, chunking, or scoring change).\n- [ ] `npm run eval:rag` / `npm run eval:quality` — N/A (no answer-generation, synthesis-prompt, or post-processing change).\n- [ ] `npm run check:production-readiness` — N/A (no clinical workflow, privacy, environment, Supabase, source-governance, or deployment change).\n- [ ] `npm run check:deployment-readiness` — N/A (no deployment/hosting/rollout change).\n\n## Clinical Governance Preflight\n\nNot applicable. This change is presentational only — mode-home navigation cards, hero sizing, and heading copy. It does not touch ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output.\n\n## Notes\n\n- Test updates in `tests/ui-tools.spec.ts`: new headings (`Forms`), the compact hero sizing baseline (44px icon / 23.2px heading, still asserting all mode homes share one size), and hardening of the flaky Answer→Services mode-toggle test with the same `toPass` re-click guard the test already uses for its Forms switch.\n- The card descriptions were shortened for scan-ability; wording changes are copy-only.\n\n[supa]:sjrfecxgysukkwxsowpy\nThis pull request has been ignored for the connected project `sjrfecxgysukkwxsowpy` because there are no changes detected in `supabase` directory. You can change this behaviour in [Project Integrations Settings ↗︎](https://supabase.com/dashboard/project/sjrfecxgysukkwxsowpy/settings/integrations).\n\n

\n\nPreview Branches by Supabase.\nLearn more about [Supabase Branching ↗︎](https://supabase.com/docs/guides/platform/branching).\n\n\n\n[![Review Change Stack](https://storage.googleapis.com/coderabbit_public_assets/review-stack-in-coderabbit-ui.svg)](https://app.coderabbit.ai/change-stack/BigSimmo/Database/pull/496?utm_source=github_walkthrough&utm_medium=github&utm_campaign=change_stack)\n\n\nNo actionable comments were generated in the recent review. 🎉\n\n

ℹ️ Recent review info

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⚙️ Run configuration

\n\n**Configuration used**: Organization UI\n\n**Review profile**: CHILL\n\n**Plan**: Pro Plus\n\n**Run ID**: `6b3e0ab2-068e-4d20-a563-783e7c0825ec`\n\n

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📥 Commits

\n\nReviewing files that changed from the base of the PR and between 70ec6409a11a85e1678eb4b320519624673a94a0 and 84fbecaeac54dbdf2ad7c3419c25583d60631240.\n\n

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📒 Files selected for processing (9)

\n\n* `src/components/applications-launcher-page.tsx`\n* `src/components/clinical-dashboard/differentials-home.tsx`\n* `src/components/clinical-dashboard/document-search-results.tsx`\n* `src/components/clinical-dashboard/favourites-hub.tsx`\n* `src/components/clinical-dashboard/medication-prescribing-workspace.tsx`\n* `src/components/forms/forms-home-page.tsx`\n* `src/components/mode-home-template.tsx`\n* `src/components/services/services-home-page.tsx`\n* `tests/ui-tools.spec.ts`\n\n

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📝 Walkthrough

\n\n\n\n## Summary by CodeRabbit\n\n* **Content Updates**\n * Simplified and clarified descriptions across Tools, Differentials, Documents, Favourites, Medications, Forms, and Services.\n * Refined headings and labels, including “Browse by type” and clearer Forms navigation text.\n\n* **Design Improvements**\n * Tightened spacing and responsive layouts across home pages.\n * Reduced hero icon and heading sizes for a more compact mobile experience.\n * Improved action card spacing, sizing, borders, and typography.\n\n* **Bug Fixes**\n * Improved reliability when switching between app modes and navigating Forms and Services.\n\n\n## Walkthrough\n\nUpdated shared mode-home responsive styling, shortened application home-page copy, adjusted Tools launcher spacing, and aligned Playwright assertions with the revised Forms headings and hero dimensions.\n\n### Changes\n\n**Mode home presentation**\n\n|Layer / File(s)|Summary|\n|---|---|\n|**Shared mode-home layout**
`src/components/mode-home-template.tsx`|Responsive hero sizing, typography, spacing, action grids, icons, and card dimensions were adjusted.|\n|**Application home-page copy**
`src/components/clinical-dashboard/*`, `src/components/forms/forms-home-page.tsx`, `src/components/services/services-home-page.tsx`|Home-page subtitles, action descriptions, and the Forms section label were revised.|\n|**Tools launcher presentation**
`src/components/applications-launcher-page.tsx`|Tools description text and workspace spacing classes were updated.|\n|**UI expectation alignment**
`tests/ui-tools.spec.ts`|Tests were updated for revised Forms headings, compact hero dimensions, Forms geometry, and retried services-mode navigation.|\n\n**Estimated code review effort:** 2 (Simple) | ~10 minutes\n\n

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🚥 Pre-merge checks | ✅ 10 | ❌ 1

\n\n### ❌ Failed checks (1 warning)\n\n| Check name | Status | Explanation | Resolution |\n| :----------------: | :--------- | :----------------------------------------------------------------------------------- | :--------------------------------------------------------------------------------- |\n| Docstring Coverage | ⚠️ Warning | Docstring coverage is 0.00% which is insufficient. The required threshold is 70.00%. | Write docstrings for the functions missing them to satisfy the coverage threshold. |\n\n

✅ Passed checks (10 passed)

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✨ Finishing Touches

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📝 Generate docstrings

\n\n- [ ] Create stacked PR\n- [ ] Commit on current branch\n\n

🧪 Generate unit tests (beta)

\n\n- [ ] Create PR with unit tests\n- [ ] Commit unit tests in branch `claude/compact-design-mockup-fcfb04`\n\n

⚔️ Resolve merge conflicts

\n\n- [ ] Resolve merge conflict in branch `claude/compact-design-mockup-fcfb04`\n\n

✨ Simplify code

\n\n- [ ] Create PR with simplified code\n- [ ] Commit simplified code in branch `claude/compact-design-mockup-fcfb04`\n\n

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\n\n\n\n\n---\n\n\n\n\n_{Comment `@coderabbitai help` to get the list of available commands.}\n\n\n@copilot resolve the merge conflicts on this branch.",{},"created",1783779905.2957559,"Completing the task","event_type","info",{"_93":505,"_97":94,"_499":3474},{"_93":1257,"_1258":1259},{"_93":1220,"_1221":1222,"_1223":1224,"_1225":1226,"_1227":-5},"pr","pr_title","Codex-generated pull request","pr_message","Codex generated this pull request, but encountered an unexpected error after generation. This is a placeholder PR message.","output_diff",{"_93":1225,"_1228":584,"_129":130,"_1229":-5,"_337":1230,"_1231":1232,"_1233":1234,"_1235":1236,"_1237":1238,"_1239":1240,"_1241":1242},"pre_apply_patch","repo_id","preapply_patch_base_commit_sha","diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md\nindex db23b23aac6283ecaec6b249584eb0b8d156aee6..8dda12c6e90b7d88912850ee359bc51697392ed0 100644\n--- a/.github/pull_request_template.md\n+++ b/.github/pull_request_template.md\n@@ -1,30 +1,35 @@\n ## Summary\n \n -\n \n ## Verification\n \n-- [ ] `npm run verify:cheap`\n+- [ ] `npm run verify:pr-local`\n+\n+During development, use `npm run verify:cheap` as the faster iteration gate before the final PR-local preflight.\n+\n - [ ] `npm run verify:ui` when UI, routing, styling, browser behavior, reduced-motion, or forced-colors behavior changed\n - [ ] `npm run verify:release` before release or handoff confidence claims\n-- [ ] `npm run format:check`\n+\n+For retrieval, ranking, selection, chunking, source/citation rendering, or answer-contract changes, `verify:pr-local` runs `eval:rag:offline` automatically. Run the offline command directly during iteration before spending a live eval.\n+\n - [ ] **`npm run eval:retrieval:quality` (must stay 36/36) when retrieval, ranking, selection, chunking, or scoring behavior changed** — CI cannot run it (needs live keys), so run it locally and paste the summary. A metadata/governance-weighting change once buried correct docs (recall 1.0→0.76) and only this eval caught it.\n - [ ] `npm run eval:rag -- --limit 15` + `npm run eval:quality -- --rag-only` when answer generation, the synthesis prompt, or answer post-processing changed (grounded-supported must not drop; citation-failure 0)\n - [ ] `npm run check:production-readiness` when clinical workflow, privacy, environment, Supabase, source governance, or deployment behavior changed\n - [ ] `npm run check:deployment-readiness` when deployment startup, hosting, or rollout behavior changed\n \n ## Clinical Governance Preflight\n \n Complete this section when the change touches ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output.\n \n - [ ] Source-backed claims still require linked source verification before clinical use\n - [ ] No patient-identifiable document workflow was introduced or expanded without explicit governance approval\n - [ ] Supabase target remains `Clinical KB Database` (`sjrfecxgysukkwxsowpy`)\n - [ ] Service-role keys and private document access remain server-only\n - [ ] Demo/synthetic content remains clearly separated from real clinical sources\n - [ ] Source metadata, review status, and outdated/unknown-source behavior remain conservative\n - [ ] Deployment classification/TGA SaMD impact was checked when clinical decision-support behavior changed\n \n ## Notes\n \n -\ndiff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml\nindex 330a76bc1a8db32e59aef4ce3ae2760e46cf5be9..4b6ad8f8125b5021ed2e2b3e2911c83aded85c70 100644\n--- a/.github/workflows/ci.yml\n+++ b/.github/workflows/ci.yml\n@@ -1,223 +1,446 @@\n name: CI\n \n on:\n push:\n branches: [main, \"release/**\"]\n pull_request:\n branches: [main, \"release/**\"]\n merge_group:\n workflow_dispatch:\n schedule:\n - cron: \"0 18 * * 0\"\n \n concurrency:\n group: ${{ github.workflow }}-${{ github.ref }}\n cancel-in-progress: true\n \n permissions:\n contents: read\n \n env:\n NEXT_PUBLIC_SUPABASE_URL: https://sjrfecxgysukkwxsowpy.supabase.co\n NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY: placeholder-ci-anon-key\n+ SUPABASE_CLI_VERSION: 2.108.0\n \n jobs:\n- # Fast deterministic merge gate: static checks, unit tests, and build.\n- # Intended as a required status check on main together with ui-smoke,\n- # Gitleaks, and one migration replay gate.\n- verify:\n+ changes:\n+ name: Change scope\n runs-on: ubuntu-24.04\n- timeout-minutes: 25\n+ timeout-minutes: 5\n+ outputs:\n+ docs_only: ${{ steps.scope.outputs.docs_only }}\n+ source_changed: ${{ steps.scope.outputs.source_changed }}\n+ coverage_changed: ${{ steps.scope.outputs.coverage_changed }}\n+ ui_changed: ${{ steps.scope.outputs.ui_changed }}\n+ db_changed: ${{ steps.scope.outputs.db_changed }}\n+ container_changed: ${{ steps.scope.outputs.container_changed }}\n+ rag_eval_changed: ${{ steps.scope.outputs.rag_eval_changed }}\n+ workflow_changed: ${{ steps.scope.outputs.workflow_changed }}\n+ codex_autofix_changed: ${{ steps.scope.outputs.codex_autofix_changed }}\n+ build_changed: ${{ steps.scope.outputs.build_changed }}\n+ changed_files: ${{ steps.scope.outputs.changed_files }}\n+ steps:\n+ - name: Checkout\n+ uses: actions/checkout@v6\n+ with:\n+ fetch-depth: 0\n+ persist-credentials: false\n \n+ - name: Setup Node.js\n+ uses: actions/setup-node@v5\n+ with:\n+ node-version-file: \".nvmrc\"\n+\n+ - name: Classify changed files\n+ id: scope\n+ env:\n+ BASE_SHA: ${{ github.event.pull_request.base.sha || github.event.merge_group.base_sha || github.event.before }}\n+ HEAD_SHA: ${{ github.event.pull_request.head.sha || github.event.merge_group.head_sha || github.sha }}\n+ run: node scripts/ci-change-scope.mjs\n+\n+ static-pr:\n+ name: Static PR checks\n+ needs: changes\n+ runs-on: ubuntu-24.04\n+ timeout-minutes: 20\n steps:\n - name: Checkout\n uses: actions/checkout@v6\n with:\n persist-credentials: false\n \n - name: Setup Node.js\n uses: actions/setup-node@v5\n with:\n node-version-file: \".nvmrc\"\n cache: npm\n cache-dependency-path: package-lock.json\n \n- - name: Workflow action pin check\n+ - name: Install dependencies\n+ run: npm ci\n+\n+ - name: Runtime alignment\n+ run: npm run check:runtime\n+\n+ - name: GitHub Actions pin check\n run: npm run check:github-actions\n \n+ - name: CI scope self-test\n+ run: npm run check:ci-scope\n+\n+ - name: Format check\n+ run: npm run format:check\n+\n+ - name: Lint\n+ run: npm run lint\n+\n+ - name: Typecheck\n+ run: npm run typecheck\n+\n+ - name: Unit tests\n+ run: npm run test\n+\n+ safety:\n+ name: Safety and config checks\n+ needs: changes\n+ if: needs.changes.outputs.docs_only != 'true'\n+ runs-on: ubuntu-24.04\n+ timeout-minutes: 15\n+ steps:\n+ - name: Checkout\n+ uses: actions/checkout@v6\n+ with:\n+ persist-credentials: false\n+\n+ - name: Setup Node.js\n+ uses: actions/setup-node@v5\n+ with:\n+ node-version-file: \".nvmrc\"\n+ cache: npm\n+ cache-dependency-path: package-lock.json\n+\n - name: Setup Deno\n uses: denoland/setup-deno@v2\n with:\n deno-version: v2.x\n \n - name: Install dependencies\n run: npm ci\n \n- - name: Runtime alignment\n- run: npm run check:runtime\n-\n- - name: Codex auto-resolve workflow guard\n- run: npm run check:codex-autofix-workflow\n-\n - name: Dependency vulnerability audit\n- # Non-mutating gate. The document parsers (pdf-parse, pdfjs-dist, mammoth,\n- # exceljs, jszip) process untrusted uploads, so high/critical advisories in\n- # the production tree must block the merge rather than wait for Dependabot.\n run: npm audit --omit=dev --audit-level=high\n \n - name: Edge function typecheck\n run: npm run check:edge:functions\n \n - name: Production readiness (CI-safe)\n run: npm run check:production-readiness:ci\n \n- - name: Format check\n- run: npm run format:check\n+ - name: Codex auto-resolve workflow guard\n+ if: needs.changes.outputs.codex_autofix_changed == 'true'\n+ run: npm run check:codex-autofix-workflow\n \n- - name: Lint\n- run: npm run lint\n+ - name: Offline RAG preflight\n+ if: needs.changes.outputs.rag_eval_changed == 'true'\n+ run: npm run eval:rag:offline\n \n- - name: Typecheck\n- run: npm run typecheck\n+ coverage:\n+ name: Unit coverage\n+ needs: changes\n+ if: needs.changes.outputs.coverage_changed == 'true'\n+ runs-on: ubuntu-24.04\n+ timeout-minutes: 20\n+ steps:\n+ - name: Checkout\n+ uses: actions/checkout@v6\n+ with:\n+ persist-credentials: false\n+\n+ - name: Setup Node.js\n+ uses: actions/setup-node@v5\n+ with:\n+ node-version-file: \".nvmrc\"\n+ cache: npm\n+ cache-dependency-path: package-lock.json\n+\n+ - name: Install dependencies\n+ run: npm ci\n \n - name: Unit tests (with coverage gate)\n run: npm run test:coverage\n \n+ build:\n+ name: Build\n+ needs: changes\n+ if: needs.changes.outputs.build_changed == 'true'\n+ runs-on: ubuntu-24.04\n+ timeout-minutes: 25\n+ steps:\n+ - name: Checkout\n+ uses: actions/checkout@v6\n+ with:\n+ persist-credentials: false\n+\n+ - name: Setup Node.js\n+ uses: actions/setup-node@v5\n+ with:\n+ node-version-file: \".nvmrc\"\n+ cache: npm\n+ cache-dependency-path: package-lock.json\n+\n+ - name: Install dependencies\n+ run: npm ci\n+\n - name: Build\n run: npm run build\n \n - name: Deployment boot smoke\n if: github.event_name == 'workflow_dispatch' || github.event_name == 'schedule' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/release/')\n- # No placeholder fallbacks: when the repository secrets are missing the\n- # smoke must fail with its explicit missing-env error rather than\n- # \"pass\" against a server that never saw real production env.\n env:\n SUPABASE_SERVICE_ROLE_KEY: ${{ secrets.SUPABASE_SERVICE_ROLE_KEY }}\n OPENAI_API_KEY: ${{ secrets.OPENAI_API_KEY }}\n RAG_QUERY_HASH_SECRET: ${{ secrets.RAG_QUERY_HASH_SECRET }}\n run: npm run check:deployment-readiness\n \n- # Chromium browser smoke in parallel with verify, so the slowest check no\n- # longer serializes behind lint/typecheck/tests/build and a flaky smoke\n- # rerun does not repeat them. The runner boots its own dev server, so no\n- # build step is needed here.\n- ui-smoke:\n+ ui-critical:\n+ name: Critical UI smoke\n+ needs: changes\n+ if: needs.changes.outputs.ui_changed == 'true'\n runs-on: ubuntu-24.04\n- timeout-minutes: 25\n-\n+ timeout-minutes: 15\n steps:\n - name: Checkout\n uses: actions/checkout@v6\n with:\n persist-credentials: false\n \n - name: Setup Node.js\n uses: actions/setup-node@v5\n with:\n node-version-file: \".nvmrc\"\n cache: npm\n cache-dependency-path: package-lock.json\n \n - name: Install dependencies\n run: npm ci\n \n - name: Restore Chromium browser cache\n uses: actions/cache@v6\n with:\n path: ~/.cache/ms-playwright\n key: playwright-chromium-${{ runner.os }}-${{ hashFiles('package-lock.json') }}\n \n - name: Install Chromium browser\n run: npx playwright install --with-deps chromium\n \n- - name: Chromium UI smoke\n- id: chromium-smoke\n- run: npm run test:e2e:chromium\n+ - name: Chromium critical UI smoke\n+ run: npm run test:e2e:critical\n \n - name: Upload UI diagnostics\n if: failure()\n uses: actions/upload-artifact@v7\n with:\n- name: verify-ui-diagnostics-${{ github.run_id }}\n+ name: critical-ui-diagnostics-${{ github.run_id }}\n+ path: |\n+ test-results/\n+ playwright-report/\n+ if-no-files-found: ignore\n+\n+ ui-regression:\n+ name: Advisory UI regression\n+ needs: changes\n+ if: github.event_name == 'pull_request' && needs.changes.outputs.ui_changed == 'true'\n+ continue-on-error: true\n+ runs-on: ubuntu-24.04\n+ timeout-minutes: 45\n+ steps:\n+ - name: Checkout\n+ uses: actions/checkout@v6\n+ with:\n+ persist-credentials: false\n+\n+ - name: Setup Node.js\n+ uses: actions/setup-node@v5\n+ with:\n+ node-version-file: \".nvmrc\"\n+ cache: npm\n+ cache-dependency-path: package-lock.json\n+\n+ - name: Install dependencies\n+ run: npm ci\n+\n+ - name: Restore Chromium browser cache\n+ uses: actions/cache@v6\n+ with:\n+ path: ~/.cache/ms-playwright\n+ key: playwright-chromium-${{ runner.os }}-${{ hashFiles('package-lock.json') }}\n+\n+ - name: Install Chromium browser\n+ run: npx playwright install --with-deps chromium\n+\n+ - name: Chromium advisory regression\n+ run: npm run test:e2e:advisory\n+\n+ - name: Upload advisory UI diagnostics\n+ if: failure()\n+ uses: actions/upload-artifact@v7\n+ with:\n+ name: advisory-ui-diagnostics-${{ github.run_id }}\n path: |\n test-results/\n playwright-report/\n if-no-files-found: ignore\n \n- # Database migration replay in parallel with verify and ui-smoke. This is the\n- # repo-owned replay gate; if the external Supabase Preview check is already\n- # required and reliable, keep this advisory or path-filtered rather than\n- # requiring both replay gates on every PR.\n db-reset-verify:\n+ name: Migration replay\n+ needs: changes\n+ if: needs.changes.outputs.db_changed == 'true'\n runs-on: ubuntu-24.04\n timeout-minutes: 15\n-\n steps:\n - name: Checkout\n uses: actions/checkout@v6\n with:\n persist-credentials: false\n \n - name: Setup Supabase CLI\n uses: supabase/setup-cli@v3\n with:\n- version: latest\n+ version: ${{ env.SUPABASE_CLI_VERSION }}\n \n - name: Restore Supabase Docker image cache\n+ id: supabase-docker-cache\n uses: actions/cache@v6\n with:\n path: /tmp/supabase-docker-cache\n- key: supabase-docker-${{ runner.os }}-${{ hashFiles('supabase/config.toml') }}\n+ key: supabase-docker-${{ runner.os }}-cli-${{ env.SUPABASE_CLI_VERSION }}-${{ hashFiles('supabase/config.toml') }}\n restore-keys: |\n- supabase-docker-${{ runner.os }}-\n+ supabase-docker-${{ runner.os }}-cli-${{ env.SUPABASE_CLI_VERSION }}-\n \n - name: Load cached Supabase Docker images\n run: |\n if [ -f /tmp/supabase-docker-cache/images.tar ]; then\n docker load -i /tmp/supabase-docker-cache/images.tar\n fi\n \n - name: Start Supabase Local Emulator\n run: supabase start\n \n - name: Verify Migration Replay\n run: supabase db reset\n \n - name: Save Supabase Docker images\n- if: always()\n+ if: success() && steps.supabase-docker-cache.outputs.cache-hit != 'true'\n continue-on-error: true\n run: |\n mkdir -p /tmp/supabase-docker-cache\n docker images --format '{{.Repository}}:{{.Tag}}' \\\n | grep -E '^(supabase/|ghcr.io/supabase/)' \\\n | sort -u \\\n | xargs -r docker save -o /tmp/supabase-docker-cache/images.tar\n \n+ pr-required:\n+ name: PR required\n+ needs: [changes, static-pr, safety, coverage, build, ui-critical, db-reset-verify]\n+ if: always()\n+ runs-on: ubuntu-24.04\n+ timeout-minutes: 5\n+ steps:\n+ - name: Verify required in-scope jobs\n+ env:\n+ DOCS_ONLY: ${{ needs.changes.outputs.docs_only }}\n+ COVERAGE_CHANGED: ${{ needs.changes.outputs.coverage_changed }}\n+ UI_CHANGED: ${{ needs.changes.outputs.ui_changed }}\n+ DB_CHANGED: ${{ needs.changes.outputs.db_changed }}\n+ BUILD_CHANGED: ${{ needs.changes.outputs.build_changed }}\n+ CHANGES_RESULT: ${{ needs.changes.result }}\n+ STATIC_RESULT: ${{ needs.static-pr.result }}\n+ SAFETY_RESULT: ${{ needs.safety.result }}\n+ COVERAGE_RESULT: ${{ needs.coverage.result }}\n+ BUILD_RESULT: ${{ needs.build.result }}\n+ UI_RESULT: ${{ needs.ui-critical.result }}\n+ DB_RESULT: ${{ needs.db-reset-verify.result }}\n+ run: |\n+ set -euo pipefail\n+\n+ require_success() {\n+ local name=\"$1\"\n+ local result=\"$2\"\n+ if [ \"$result\" != \"success\" ]; then\n+ echo \"::error::$name result was $result\"\n+ exit 1\n+ fi\n+ }\n+\n+ require_skipped_or_success() {\n+ local name=\"$1\"\n+ local result=\"$2\"\n+ if [ \"$result\" != \"success\" ] && [ \"$result\" != \"skipped\" ]; then\n+ echo \"::error::$name result was $result\"\n+ exit 1\n+ fi\n+ }\n+\n+ require_success \"changes\" \"$CHANGES_RESULT\"\n+ require_success \"static-pr\" \"$STATIC_RESULT\"\n+\n+ if [ \"$DOCS_ONLY\" = \"true\" ]; then\n+ require_skipped_or_success \"safety\" \"$SAFETY_RESULT\"\n+ else\n+ require_success \"safety\" \"$SAFETY_RESULT\"\n+ fi\n+\n+ if [ \"$COVERAGE_CHANGED\" = \"true\" ]; then\n+ require_success \"coverage\" \"$COVERAGE_RESULT\"\n+ else\n+ require_skipped_or_success \"coverage\" \"$COVERAGE_RESULT\"\n+ fi\n+\n+ if [ \"$BUILD_CHANGED\" = \"true\" ]; then\n+ require_success \"build\" \"$BUILD_RESULT\"\n+ else\n+ require_skipped_or_success \"build\" \"$BUILD_RESULT\"\n+ fi\n+\n+ if [ \"$UI_CHANGED\" = \"true\" ]; then\n+ require_success \"ui-critical\" \"$UI_RESULT\"\n+ else\n+ require_skipped_or_success \"ui-critical\" \"$UI_RESULT\"\n+ fi\n+\n+ if [ \"$DB_CHANGED\" = \"true\" ]; then\n+ require_success \"db-reset-verify\" \"$DB_RESULT\"\n+ else\n+ require_skipped_or_success \"db-reset-verify\" \"$DB_RESULT\"\n+ fi\n+\n+ echo \"Required in-scope PR checks passed.\"\n+\n release-browser-matrix:\n if: github.event_name == 'workflow_dispatch' || github.event_name == 'schedule' || github.ref == 'refs/heads/main' || startsWith(github.ref, 'refs/heads/release/')\n- needs: [verify, ui-smoke, db-reset-verify]\n+ needs: [pr-required]\n runs-on: ubuntu-24.04\n timeout-minutes: 70\n \n steps:\n - name: Checkout\n uses: actions/checkout@v6\n with:\n persist-credentials: false\n \n - name: Setup Node.js\n uses: actions/setup-node@v5\n with:\n node-version-file: \".nvmrc\"\n cache: npm\n cache-dependency-path: package-lock.json\n \n - name: Install dependencies\n run: npm ci\n \n - name: Build\n run: npm run build\n \n - name: Restore browser cache\n uses: actions/cache@v6\n with:\ndiff --git a/.github/workflows/codex-autofix-review-comments.yml b/.github/workflows/codex-autofix-review-comments.yml\nindex 8514c28e8be0003ef5bb1a7d95779e9a2e68cfdd..317d2a0d56702f22038da45d35d94a0e20a8fe95 100644\n--- a/.github/workflows/codex-autofix-review-comments.yml\n+++ b/.github/workflows/codex-autofix-review-comments.yml\n@@ -1,95 +1,127 @@\n name: Codex auto-resolve review comments\n \n on:\n pull_request_review_comment:\n types: [created]\n \n permissions:\n contents: read\n issues: write\n pull-requests: read\n \n-concurrency:\n- group: codex-autoresolve-${{ github.event.pull_request.number }}\n- cancel-in-progress: false\n-\n jobs:\n request-codex-autoresolve:\n name: Request Codex auto-resolve\n runs-on: ubuntu-24.04\n if: >\n github.event.pull_request.state == 'open' &&\n- contains(github.event.comment.user.login, 'chatgpt-codex-connector')\n+ github.event.comment.user.type == 'Bot' &&\n+ (github.event.comment.user.login == 'chatgpt-codex-connector' ||\n+ github.event.comment.user.login == 'chatgpt-codex-connector[bot]')\n+ concurrency:\n+ group: codex-autoresolve-${{ github.event.pull_request.number }}\n+ cancel-in-progress: false\n steps:\n - name: Ask Codex to resolve review comments\n- uses: actions/github-script@v7\n+ uses: actions/github-script@3a2844b7e9c422d3c10d287c895573f7108da1b3 # v9.0.0\n with:\n github-token: ${{ github.token }}\n script: |\n const pr = context.payload.pull_request;\n const reviewComment = context.payload.comment;\n+ const allowedCodexBotLogins = new Set([\n+ \"chatgpt-codex-connector\",\n+ \"chatgpt-codex-connector[bot]\",\n+ ]);\n+ const scopedResolveCommand = \"@codex resolve actionable Codex review findings for this pull request and current head\";\n+\n+ if (\n+ reviewComment.user?.type !== \"Bot\" ||\n+ !allowedCodexBotLogins.has(reviewComment.user.login)\n+ ) {\n+ core.warning(\"Skipping Codex auto-resolve request because the review comment author is not the trusted Codex connector bot.\");\n+ return;\n+ }\n \n if (reviewComment.in_reply_to_id) {\n core.notice(\"Skipping Codex auto-resolve request because the comment is a review-thread reply.\");\n return;\n }\n \n- const sourceBody = reviewComment.body || \"\";\n- if (\n- sourceBody.includes(\"codex-autoresolve:\") ||\n- sourceBody.includes(\"codex-autoresolve-pr:\") ||\n- sourceBody.includes(\"@codex resolve actionable Codex review findings for this pull request and current head\")\n- ) {\n+ const sourceBody = (reviewComment.body || \"\").trimStart();\n+ const hasAutoResolveMarker =\n+ sourceBody.startsWith(\"`;\n+ const marker = ``;\n+ const maxAutoResolveRequests = 3;\n \n let existingComments;\n try {\n existingComments = await github.paginate(github.rest.issues.listComments, {\n owner,\n repo,\n issue_number,\n per_page: 100,\n });\n } catch (error) {\n if (error.status === 403) {\n- core.warning(\"Skipping Codex auto-resolve request because GitHub denied permission to list issue comments.\");\n- core.notice(\"Grant issues: read/write permission or allow the workflow token to read issue comments to enable duplicate request checks.\");\n+ const message = \"Codex auto-resolve failed because GitHub denied permission to list issue comments.\";\n+ core.warning(message);\n+ core.setFailed(message);\n return;\n }\n \n throw error;\n }\n \n- if (existingComments.some((comment) => (comment.body || \"\").includes(marker))) {\n- core.notice(\"Skipping duplicate Codex auto-resolve request for this pull request.\");\n+ const trustedExistingRequests = existingComments.filter(\n+ (comment) =>\n+ comment.user?.type === \"Bot\" &&\n+ comment.user.login === \"github-actions[bot]\" &&\n+ (comment.body || \"\").trimStart().startsWith(\"`,\n- \"@codex resolve actionable Codex review findings for this pull request and current head using the repository instructions. Always fix P0 and P1 findings. For P2 and lower findings, decide whether each is worth fixing automatically. Fix clear, scoped, low-risk issues with the best minimal change; otherwise reply explaining why the issue is deferred or not actionable. Do not update the branch from main, address unrelated reviews, broaden scope, or create more than one scoped fix commit unless explicitly asked. After each fix or decision, resolve the review conversation if supported. Do not use external APIs, paid services, credentials, dependency changes, or broad refactors unless explicitly authorized. Add targeted tests where behavior changes and run the narrowest relevant validation.\",\n+ `${scopedResolveCommand} using the repository instructions. Always fix P0 and P1 findings. For P2 and lower findings, decide whether each is worth fixing automatically. Fix clear, scoped, low-risk issues with the best minimal change; otherwise reply explaining why the issue is deferred or not actionable. Do not update the branch from main, address unrelated reviews, broaden scope, or create more than one scoped fix commit unless explicitly asked. After each fix or decision, resolve the review conversation if supported. Do not use external APIs, paid services, credentials, dependency changes, or broad refactors unless explicitly authorized. Add targeted tests where behavior changes and run the narrowest relevant validation.`,\n ].join(\"\\n\\n\");\n \n try {\n await github.rest.issues.createComment({\n owner,\n repo,\n issue_number,\n body: prompt,\n });\n } catch (error) {\n if (error.status === 403) {\n- core.warning(\"Skipping Codex auto-resolve request because this workflow token cannot comment on the pull request.\");\n+ const message = \"Codex auto-resolve failed because this workflow token cannot comment on the pull request.\";\n+ core.warning(message);\n+ core.setFailed(message);\n return;\n }\n \n throw error;\n }\ndiff --git a/.github/workflows/sast.yml b/.github/workflows/sast.yml\nindex 183f81e2fbb4cd2a3e954eb5f3cf2736049df35b..cc3907d730cf7a00301010abe0230541165c19d1 100644\n--- a/.github/workflows/sast.yml\n+++ b/.github/workflows/sast.yml\n@@ -1,52 +1,53 @@\n name: SAST\n \n on:\n push:\n branches: [main, \"release/**\"]\n pull_request:\n branches: [main, \"release/**\"]\n workflow_dispatch:\n \n concurrency:\n group: ${{ github.workflow }}-${{ github.ref }}\n cancel-in-progress: true\n \n permissions:\n contents: read\n \n jobs:\n- # Static application security testing. Semgrep is used instead of CodeQL\n+ # Advisory static application security testing. Semgrep is used instead of CodeQL\n # because this repository is private without GitHub Advanced Security, so the\n- # code-scanning SARIF upload CodeQL relies on is unavailable; a build-failing\n- # scan mirrors the existing `npm audit` gate in ci.yml. The document parsers\n+ # code-scanning SARIF upload CodeQL relies on is unavailable. The document parsers\n # (pdf-parse, pdfjs-dist, mammoth, exceljs, jszip) and the answer/ingestion\n- # paths process untrusted uploaded documents, so ERROR-severity findings block\n- # the merge. Runs OSS-engine only — no Semgrep account or token required.\n+ # paths process untrusted uploaded documents, so ERROR-severity findings remain\n+ # visible without making mutable registry rules a required merge dependency.\n+ # Runs OSS-engine only — no Semgrep account or token required.\n semgrep:\n name: Semgrep\n+ continue-on-error: true\n runs-on: ubuntu-24.04\n timeout-minutes: 15\n container:\n image: semgrep/semgrep:1.168.0\n steps:\n - name: Checkout\n uses: actions/checkout@v6\n with:\n persist-credentials: false\n \n - name: Semgrep scan\n # --error fails the job on any ERROR-severity finding; --oss-only keeps\n- # it token-free; --metrics off sends no telemetry. Rulesets are pinned by\n- # name (no network `auto` inference). Secrets are covered by Gitleaks in\n- # secret-scan.yml, so no p/secrets here. Scope is source only.\n+ # it token-free; --metrics off sends no telemetry. Named registry rules\n+ # remain advisory because they can change independently of this repository.\n+ # Secrets are covered by Gitleaks in secret-scan.yml, so no p/secrets here.\n run: >\n semgrep scan\n --error\n --severity ERROR\n --oss-only\n --metrics off\n --config p/typescript\n --config p/javascript\n --config p/react\n --config p/nodejs\n- src worker scripts\n+ src worker scripts supabase/functions\ndiff --git a/.prettierignore b/.prettierignore\nindex 2c40481a2cea7e9574fa9faeab009c954e6ad7ba..a8f1682ceae86fd968b04089b2cc93debbdb7fbf 100644\n--- a/.prettierignore\n+++ b/.prettierignore\n@@ -1,19 +1,20 @@\n node_modules/\n .next/\n out/\n build/\n coverage/\n test-results/\n+test-results-codex-remediation/\n playwright-report/\n sample-documents/\n dev-server*.log\n package-lock.json\n public/demo-documents/\n .tmp-visual/\n scratch/\n .claude/worktrees/\n .impeccable/\n # Generated by `supabase gen types`; keep the generator's formatting so\n # regeneration stays churn-free.\n src/lib/supabase/database.types.ts\n supabase/drift-manifest.json\ndiff --git a/AGENTS.md b/AGENTS.md\nindex d08affc1d215f9a63d03c13f7cd55578856a3a83..5c8c100f187e5f984cb4e0117be9bcd34f519068 100644\n--- a/AGENTS.md\n+++ b/AGENTS.md\n@@ -142,51 +142,51 @@ Review routing:\n - `release-readiness`: Use for explicit release, merge, PR readiness, or handoff confidence requests. Do not run provider-backed gates without confirmation.\n - `branch-cleanup`: Use only when the prompt explicitly asks for branch cleanup/hygiene or branch deletion candidates. Apply `docs/branch-cleanup-guide.md` and the review ledger before inspecting branch diffs.\n - `pr-ci-fix`: Confirmation-required for this repo. GitHub/GitLab API calls, PR comments, CI reruns, commits, and pushes require explicit user approval and must respect the upload/handoff rules.\n \n When a branch or PR review completes, record the reviewed branch/ref, HEAD SHA, date, scope, outcome, and checks in `docs/branch-review-ledger.md`.\n \n \n \n \n \n # Local server safety\n \n - If the user says `run`, execute `npm run ensure` and return the printed URL.\n - If the user asks for UI/frontend changes, browser QA, screenshots, mobile checks, or a local app link, run `npm run ensure` before opening or testing the app, even if the user did not say `run`.\n - Never assume `localhost:3000`, `localhost:3001`, or `localhost:3002`.\n - Never attach to a local server unless `/api/local-project-id` confirms it is this project.\n - Do not kill or modify other projects' local servers. If the stable project port is busy, let `npm run ensure` choose the next safe project URL.\n - Do not run a permanent watcher. Only start or verify the server when the current chat task needs the app or the user asks to run it.\n \n \n \n \n \n # Process hardening phases\n \n-- For non-trivial source/config/test changes, prefer `npm run verify:cheap` as the first broad gate.\n+- For non-trivial source/config/test changes, prefer `npm run verify:cheap` as the first broad gate and `npm run verify:pr-local` before PR handoff when the change is ready. The PR-local gate runs format plus `verify:cheap`, then conditionally adds the production build/client-bundle scan and code-backed offline RAG tests. Browser, dependency-audit, Docker/Supabase replay, and provider-backed checks remain separate gates. Use `npm run verify:pr-local -- --dry-run --files ` to inspect selection without running commands. The broader `--extended` plan is dry-run only unless explicit approval is reflected by `ALLOW_EXTENDED_PR_LOCAL=true`.\n - For UI, frontend, browser, routing, styling, reduced-motion, or forced-colors changes, run `npm run ensure` before browser work and use `npm run verify:ui` as the Chromium UI gate.\n - For release or handoff confidence, use `npm run verify:release`; this includes the full Playwright project set.\n - For clinical ingestion, answer generation, source governance, privacy, production-readiness, or environment changes, run the smallest relevant domain check plus `npm run check:production-readiness`.\n - For pull requests that touch ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output, complete the clinical governance preflight in `.github/pull_request_template.md`.\n - Track known verification debts and staged process improvements in `docs/process-hardening.md` instead of relying on chat-only memory.\n \n \n \n \n \n # Supabase project safety\n \n - This repo targets the live Supabase project `Clinical KB Database`.\n - Expected project ref: `sjrfecxgysukkwxsowpy`.\n - Older unused project ref `qjgitjyhxrwxsrydablr` belongs to `Database`; treat it as stale and do not use it.\n - Run `npm run check:supabase-project` after changing Supabase env values.\n \n \n \n \n \n # API and provider confirmation boundary\n \n - Never run, modify, test, or otherwise interact with OpenAI, Supabase, GitHub/GitLab, hosted CI, production-like services, or provider-backed workflows without explicit user confirmation.\n - Treat indirect API usage inside scripts, tests, release checks, PR tooling, and review automation as confirmation-required too.\n@@ -367,46 +367,51 @@ When explicitly asked to fix or resolve review findings:\n - Do not automatically fix a P2 or lower finding when it requires broad refactoring, product judgment, dependency changes, credentials, paid/external APIs, large design decisions, or risky behavior changes.\n - If a P2 or lower finding is not worth fixing automatically, comment with the reason and the recommended human decision, then resolve the review conversation when supported.\n - Preserve unrelated work and avoid opportunistic refactors.\n - Do not add dependencies unless the issue cannot reasonably be fixed without one.\n - Do not change secrets, credentials, environment configuration, billing settings, deployment settings, or external service setup unless explicitly requested.\n - Do not use external APIs, paid services, credentials, secrets, live Supabase projects, or OpenAI provider calls unless explicitly authorized.\n - If a finding is ambiguous, unsafe to fix automatically, or requires a large rewrite, stop and explain the decision instead of guessing.\n - Add or update the smallest relevant test when the issue affects behavior.\n - Run the narrowest relevant validation for the touched surface before broader suites.\n - Summarize fixed issues, changed files, validation run, and any remaining human decisions.\n \n ### Review comment lifecycle\n \n - Treat closing review conversations as part of the task when asked to fix or resolve comments.\n - After fixing a P0 or P1 finding, reply with the fix summary and resolve the review conversation when supported by GitHub permissions/tooling.\n - After fixing an approved P2 or lower finding, reply with the fix summary and resolve the review conversation when supported.\n - After deciding not to fix a P2 or lower finding, reply with the reason, note whether it is deferred or not actionable, and resolve the review conversation when supported.\n - Do not leave a review conversation open after it has been fixed or explicitly dispositioned.\n - If GitHub permissions/tooling do not allow resolving a review conversation, leave a clear reply that says the issue is fixed or dispositioned and that the conversation is ready for a human to resolve.\n \n ### Automatic resolve trigger\n \n Automatic Codex review is review-only by default. This repository includes `.github/workflows/codex-autofix-review-comments.yml`, which requests the resolve task automatically after Codex posts a PR review or inline review comment.\n \n - The workflow must only trigger from Codex review bot reviews or comments on open pull requests.\n+- Match the trusted Codex connector bot by exact login and bot type; do not use substring login checks.\n+- Keep per-pull-request concurrency on the authorized job, not the whole workflow, so unrelated review comments cannot displace a pending Codex request.\n+- Pin the supported Node 24-based `actions/github-script` release to its reviewed immutable commit SHA.\n - The workflow must skip review-thread replies and auto-resolve request comments so Codex fix summaries do not re-trigger the workflow.\n-- The workflow must ask Codex to resolve all review comments using these repository instructions.\n-- The workflow must avoid duplicate requests for the same pull request, even after follow-up commits change the head SHA.\n+- The workflow must ask Codex to resolve only actionable Codex review findings for the triggering pull request and current head using these repository instructions.\n+- The workflow may request one repair per pull-request head SHA, capped at three automatic repair cycles per pull request.\n+- Only trust a pull-request deduplication marker when it was posted by the GitHub Actions bot.\n+- Permission failures while reading or creating pull-request comments must fail the workflow visibly, not return a successful soft-skip.\n - The workflow must not run Codex directly with API credentials.\n - P0 and P1 findings should always be fixed.\n - P2 and lower findings should be fixed only when clear, scoped, low-risk, and testable; otherwise explain the decision and resolve or mark ready for human resolution.\n \n ### Primary PR command\n \n `@codex resolve actionable Codex review findings for this pull request and current head using the repository instructions. Always fix P0 and P1 findings. For P2 and lower findings, decide whether each is worth fixing automatically. Fix clear, scoped, low-risk issues with the best minimal change; otherwise reply explaining why the issue is deferred or not actionable. Do not update the branch from main, address unrelated reviews, broaden scope, or create more than one scoped fix commit unless explicitly asked. After each fix or decision, resolve the review conversation if supported. Do not use external APIs, paid services, credentials, dependency changes, or broad refactors unless explicitly authorized. Add targeted tests where behavior changes and run the narrowest relevant validation.`\n \n ## Cursor Cloud specific instructions\n \n Durable notes for Cloud Agents. Standard commands live in `README.md` and `package.json`; only non-obvious caveats are captured here.\n \n - Runtime: the app hard-requires Node 24.x / npm 11.x (`engine-strict`, and `scripts/dev-free-port.mjs` exits on any other major). Node 24 is installed via nvm and symlinked into `/usr/local/cargo/bin` (first entry in `PATH`) so `node`/`npm` resolve to v24 in every shell. If a shell ever resolves `/exec-daemon/node` (v22) instead, prepend `\"$HOME/.nvm/versions/node/v24.18.0/bin\"` to `PATH`.\n - Live vs demo mode: the app auto-detects. When the Supabase + OpenAI env vars below are present (set them as Cloud Agent **Secrets** so they inject into `.env.local`/`process.env`), `isDemoMode()` (`src/lib/env.ts`) is false and the app runs against the live `Clinical KB Database` project (~2000 indexed docs) with OpenAI answer generation. When they are absent, dev auto-falls back to demo mode using the synthetic corpus in `src/lib/demo-data.ts` / `public/demo-documents/`. Required for live mode: `NEXT_PUBLIC_SUPABASE_URL`, `SUPABASE_PROJECT_REF`, `SUPABASE_PROJECT_NAME`, `NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY` (`sb_publishable_…`), `SUPABASE_SERVICE_ROLE_KEY` (accepts the `sb_secret_…` secret key), `OPENAI_API_KEY`. Keep `RAG_PROVIDER_MODE=auto` so OpenAI is used with graceful source-only fallback. `E2E_USER_EMAIL`/`E2E_USER_PASSWORD` power CI env-check and Playwright.\n - Live-mode caveat: `RAG_PROVIDER_MODE=auto` attempts OpenAI (fast → strong route); if generation fails the built-in quality gates it silently degrades to a deterministic \"Source-only\" answer that still cites real documents — this is expected, not a failure. The header sign-in UI exposes magic-link + OAuth only (no password field), but the `/api/answer` + retrieval flow works server-side without a browser session.\n - What still won't run in this VM even with secrets: `npm run worker` also needs the Python OCR stack (`worker/python/requirements.txt`) and heavy parsing deps; Supabase edge functions need Deno v2.x + deployment. `verify:release` additionally runs governance/eval gates. Treat missing-secret failures of `check:supabase-project`/`verify:release` in demo mode as expected, not regressions.\n - Dev server: `npm run dev` selects a stable per-project localhost port (e.g. `4461`), binds `0.0.0.0`, and prints the exact URL. Never assume port 3000/3001/3002. `npm run ensure` starts/verifies it in the background.\n-- Verification without secrets: `npm run lint`, `npm run typecheck`, and `npm run test` (vitest) all pass offline. `npm run verify:cheap` also runs `check:runtime` + `sitemap:check` and is safe offline.\n+- Verification without secrets: `npm run lint`, `npm run typecheck`, and `npm run test` (vitest) all pass offline. `npm run verify:cheap` also runs runtime, GitHub Actions pin, CI-scope, and sitemap checks. `npm run verify:pr-local` adds format, conditional build/client-bundle scanning, and code-backed offline RAG tests; browser, Docker/Supabase, audit, and provider checks remain separate.\ndiff --git a/Dockerfile b/Dockerfile\nindex 0694c456086eade38d45e18c6361c61564917e53..084661ddcea0e49bd73fe61748c87392caec25dc 100644\n--- a/Dockerfile\n+++ b/Dockerfile\n@@ -28,34 +28,35 @@ FROM node:24-bookworm-slim AS build\n WORKDIR /app\n ENV NEXT_TELEMETRY_DISABLED=1\n COPY --from=deps /app/node_modules ./node_modules\n COPY . .\n ARG NEXT_PUBLIC_SUPABASE_URL=https://sjrfecxgysukkwxsowpy.supabase.co\n ARG NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY=placeholder-build-publishable-key\n ENV NEXT_PUBLIC_SUPABASE_URL=${NEXT_PUBLIC_SUPABASE_URL}\n ENV NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY=${NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY}\n # The repo build script allocates an 8 GiB heap; give the builder >= 10 GiB.\n RUN npm run build\n \n FROM node:24-bookworm-slim AS prod-deps\n WORKDIR /app\n COPY package.json package-lock.json .npmrc ./\n COPY scripts/check-node-engine.cjs scripts/check-node-engine.cjs\n RUN npm ci --omit=dev\n \n FROM node:24-bookworm-slim AS runner\n WORKDIR /app\n ENV NODE_ENV=production\n ENV NEXT_TELEMETRY_DISABLED=1\n ENV PORT=3000\n COPY --from=prod-deps /app/node_modules ./node_modules\n COPY --from=build /app/.next ./.next\n COPY public ./public\n+COPY --from=build /app/src/lib/security-headers.ts ./src/lib/security-headers.ts\n COPY package.json next.config.ts ./\n USER node\n EXPOSE 3000\n # /api/health is the app's own ops health route.\n HEALTHCHECK --interval=30s --timeout=5s --start-period=30s --retries=3 \\\n CMD node -e \"fetch('http://127.0.0.1:'+(process.env.PORT||3000)+'/api/health').then((r)=>process.exit(r.ok?0:1)).catch(()=>process.exit(1))\"\n # Bypass scripts/dev-free-port.mjs (a local-dev port picker): a container has\n # exactly one app, so bind 0.0.0.0 on $PORT directly.\n CMD [\"sh\", \"-c\", \"node node_modules/next/dist/bin/next start -H 0.0.0.0 -p ${PORT:-3000}\"]\ndiff --git a/docs/branch-review-ledger.md b/docs/branch-review-ledger.md\nindex e4d61b8c5bd0150d51b5a898fdf44b93718b1bd5..14570b6fe06be69a4da2f524e02b09d7aa90fdcf 100644\n--- a/docs/branch-review-ledger.md\n+++ b/docs/branch-review-ledger.md\n@@ -1,23 +1,49 @@\n # Branch Review Ledger\n \n Use this ledger to prevent repeated branch and PR reviews when the reviewed HEAD has not changed.\n \n ## Lookup Procedure\n \n 1. Identify the target branch or ref from the user request. If no target is named, use the current branch.\n 2. Resolve the current HEAD:\n \n ```powershell\n git rev-parse \n ```\n \n 3. Search this file for a row with the same branch/ref, reviewed HEAD, and review scope.\n 4. If the HEAD and scope match an existing completed row, do not repeat the review. Summarize the prior outcome and ask before doing a fresh pass.\n 5. If the HEAD changed, or the user explicitly requests a fresh review, review the changed scope and append a new row.\n 6. For branch-cleanup passes, run this lookup before inspecting branch diffs so unchanged reviewed branches are filtered out early.\n \n ## Review Records\n \n-| Date | Branch or ref | Reviewed HEAD | Scope | Outcome | Checks |\n-| ---------- | -------------- | ------------- | -------------- | ------------------------------------------------------------- | ---------------------------------------------------------------------------------------------------------- |\n-| 2026-07-09 | example/branch | abc1234 | branch-cleanup | Example: already merged into `main`; no unique patch content. | `git log --right-only --cherry-pick main...example/branch`; `git diff --name-status main...example/branch` |\n+| Date | Branch or ref | Reviewed HEAD | Scope | Outcome | Checks |\n+| ---------- | ------------------------------------------------------ | ---------------------------------------- | ------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |\n+| 2026-07-10 | codex/design-ux-review-fixes | 648abfa3f7c91395b5eeca543f70e0b6ea59e9e0 | design-system + UX + design | Five issue groups confirmed; scoped fixes applied in the worktree. | `npm run check:type-scale`; focused Vitest (19/19); `npm run typecheck`; `npm run lint`; `npm run sitemap:check`; browser/API-backed checks awaiting approval |\n+| 2026-07-11 | codex/design-ux-review-integration | 98093ec7b | branch-integration-review | Replayed the reviewed design and UX fixes onto current `origin/main`, preserved the lightweight evidence-panel boundary, and retained the merged quality fixes. | `npm run check:type-scale`; combined focused Vitest (8 files, 42 tests); runtime/action/sitemap/type-scale/lint stages of `verify:cheap`; typecheck blocked by stale worktree dependencies pending hosted clean install; `git diff --check` |\n+| 2026-07-09 | example/branch | abc1234 | branch-cleanup | Example: already merged into `main`; no unique patch content. | `git log --right-only --cherry-pick main...example/branch`; `git diff --name-status main...example/branch` |\n+| 2026-07-10 | codex/pr-testing-streamlining | 155c801cd58f797037d8aaa8b885405a1c599249 | working-tree diff: PR testing streamlining | Changes requested: 2 P1 clinical-gate defects and 7 P2/P3 scope, local parity, and UI-process defects. | `npm run check:ci-scope`; `npm run check:github-actions`; `npm run check:codex-autofix-workflow`; `npm run eval:rag:offline`; `npm run test:e2e:critical`; targeted scope classifications; `git diff --check` |\n+| 2026-07-10 | codex/pr-testing-streamlining | 155c801cd58f797037d8aaa8b885405a1c599249 | working-tree remediation review | All recorded P1-P3 findings fixed; no remaining high-confidence issue in the changed scope. | `npm run verify:cheap`; `npm run verify:pr-local`; `npm run eval:rag:offline`; `npm run test:e2e:critical`; `npm run test:e2e:advisory`; CI YAML parse; scope/action/Codex guards; `git diff --check` |\n+| 2026-07-10 | codex/review-autofix-flow | 155c801cd58f797037d8aaa8b885405a1c599249 | codex-autofix-flow | Fixed exact connector authorization, trusted-marker deduplication, and strict self-trigger matching; added regression coverage. | `npm run check:codex-autofix-workflow`; focused Vitest (4 passed); `npm run verify:cheap` pre-test stages passed before tool timeout; `npm test` (1,415 passed, 1 skipped); focused Prettier check; `npm run check:github-actions` |\n+| 2026-07-10 | codex/review-autofix-flow | 155c801cd58f797037d8aaa8b885405a1c599249 | codex-autofix-flow-followup | Fixed untrusted workflow-level concurrency interference and migrated the bridge from the Node 20 action runtime to `actions/github-script@v9`; added direct embedded-script execution coverage. | Focused Vitest (13 passed); targeted ESLint; `tsc --noEmit`; `npm run check:codex-autofix-workflow`; `npm run check:github-actions`; focused Prettier check; `git diff --check` |\n+| 2026-07-10 | codex/review-autofix-flow | 155c801cd58f797037d8aaa8b885405a1c599249 | codex-autofix-residual-fixes | Replaced one-shot PR deduplication with a three-cycle head-SHA cap, made comment permission failures fail visibly, and pinned `github-script` v9.0.0 to its verified immutable commit. | TDD red run (7 expected failures); focused Vitest green run (15 passed); `npm run verify:cheap` (152 files passed, 1 skipped; 1,426 tests passed, 1 skipped); focused Prettier check; `git diff --check`; official `git ls-remote` tag verification |\n+| 2026-07-10 | codex/architecture-review-fixes | 648abfa3f7c91395b5eeca543f70e0b6ea59e9e0 | architecture-review | Seven findings fixed in the working tree: three runtime cycles, unbounded owner caches, a client/server env boundary breach, reversed runtime-to-scripts ownership, and architecture-doc drift. | `npm run test -- tests/architecture-boundaries.test.ts tests/bounded-ttl-cache.test.ts tests/rag-score.test.ts tests/rag-cache-utils.test.ts tests/rag-cache-invalidation.test.ts tests/evidence-panels.test.ts tests/clinical-dashboard-merge-artifacts.test.ts`; `npm run verify:cheap`; `npm run check:production-readiness:ci` |\n+| 2026-07-10 | codex/architecture-review-fixes | 648abfa3f7c91395b5eeca543f70e0b6ea59e9e0 | frontend-architecture-review | Shared cycle/env findings confirmed and fixed; three additional findings fixed for defeated lazy boundaries, duplicate shell/dashboard subscriptions, and unstable search-context values. | `npm run test -- tests/architecture-boundaries.test.ts tests/evidence-panels.test.ts tests/clinical-dashboard-merge-artifacts.test.ts`; `npm run verify:cheap`; UI gate deferred pending explicit local-API approval |\n+| 2026-07-11 | codex/architecture-review-integration | b45df727b29aad8ba4ec5d4e96d1f0599d7dad8a | branch-integration-review | Replayed the reviewed architecture fixes onto current `origin/main`; preserved current CI/autofix history and found no new high-confidence defect in the integrated diff. | `npm run check:runtime`; `npm run check:github-actions`; `npm run sitemap:check`; `npm run lint`; `npm run typecheck`; focused Vitest (24 passed); full Vitest with `--testTimeout=30000` (1,433 passed, 1 skipped); `git diff --check` |\n+| 2026-07-10 | codex/quality-testing-typescript-fixes | 648abfa3f | code-quality + testing + TypeScript | 17 confirmed P2/P3 issues fixed; no P0/P1 findings; residual large-module complexity noted. | Focused Vitest and Playwright; full Vitest 1427 passed/1 skipped; coverage; lint; typecheck; production-readiness CI |\n+| 2026-07-11 | codex/quality-review-integration | d3fcef8bbc9ab12b929771421b532c1ed8b7e1e7 | branch-integration-review | Replayed the quality, testing, and TypeScript fixes onto current `origin/main` and consolidated the stronger standalone auth callback coverage into this branch. | Changed-file Prettier; focused Vitest (5 files, 23 tests); `git diff --check`; original branch full Vitest/coverage/lint/typecheck and targeted Chromium evidence retained |\n+| 2026-07-11 | codex/architecture-review-integration | 665103250ccc33b5870862b8d8467607a1ae5d23 | coderabbit-followup | Fixed POSIX project-root identity collisions and closed dynamic-import and self-cycle gaps in the architecture regression guard. | Local-server Vitest passed; architecture-boundaries Vitest passed (6 tests); `npm run typecheck`; focused Prettier; `git diff --check` |\n+| 2026-07-11 | codex/architecture-review-followup | f5deaaee98864f1d32c1060ae14966a4f5975872 | coderabbit-test-followup | Removed probabilistic no-collision assertions from the local identity test and replaced them with deterministic normalization, repeatability, ID-shape, and port-range checks. | Local-server Vitest (2 passed); focused Prettier; `git diff --check`; hosted CI/SAST/Secret Scan passed on the reviewed head |\n+| 2026-07-11 | codex/pr-check-followup | 298e8f5bec2a4673dd225da3f446f008b8f25953 | residual-pr-check-hardening | Ported only the three PR-check improvements not already merged by PR #454: pinned Supabase CLI/cache ownership, advisory Semgrep coverage for Edge Functions, and regression guards for both contracts. | `npm run check:github-actions`; `npm run check:ci-scope`; focused Prettier; `git diff --check` |\n+| 2026-07-11 | claude/mobile-search-bar-fix (PR #456) | b73196c2e2e4a536804cdcdb50879c29e2c582c5 | PR required-testing review | All 4 Advisory UI regression failures confirmed PR-caused via A/B against pre-merge main (01f2cee0d): the 640px mode-home query moved the phone composer out of the hero, contradicting the design tests; residual ≥640px vanish remained when the slot never mounts. PR merged (b32c17b34) before the rework landed; follow-up fix shipped on `claude/mode-home-composer-hero-fix` (0px hero query restored, portal-outcome inline fallback, new `@critical` composer-presence test). Also found: main CI red on every push — missing `RAG_QUERY_HASH_SECRET` secret fails the deployment boot smoke and skips `release-browser-matrix`; owner adding the secret. | Local chromium A/B (PR head 4/5 fail vs baseline product-pass); rework targeted run 6/6 pass incl. new `@critical`; `npm run typecheck`; `npm run lint`; focused Prettier check |\n+| 2026-07-11 | PR #487 / claude/answer-page-design-polish-ffd5a6 | b2c772606126f8323424bc9c0b636bac77c08789 | open-PR review, unresolved comments, and CI | Two findings fixed: expanded weak/unsupported prior answers retain an explicit source-review warning, and cross-mode search actions no longer log an incorrect detail-open telemetry event. Added a persisted prior-turn browser assertion. No additional high-confidence defect was found in the changed scope. | Focused answer-render and cross-mode Vitest (20/20); TypeScript; focused Prettier; `git diff --check`. Browser assertion delegated to hosted CI because Turbopack rejects the isolated worktree's external node_modules junction. |\n+| 2026-07-11 | PR #469 / claude/response-formatting-cleanup-b57a9c | f1864308e0b287bb83b2a13daca4c3aa2ab95a3e | open-PR review, unresolved comments, and CI | P2 fixed: the OCR bullet sanitizer now preserves line-start O blood values when followed by blood or red-cell noun tails while still stripping non-blood bullets such as `o Negative screen`. No additional high-confidence defect was found in the nine-file diff. | Focused sanitizer/extractive Vitest (75/75); TypeScript; focused Prettier; `git diff --check`. Production-readiness script ran fail-closed with provider variables cleared and reported only expected missing provider configuration. |\n+| 2026-07-11 | PR #466 / claude/search-timeout-failure-s6aiuj | 54d52292eeb9e1c7856b3dad89d1b72e0d49fd53 | open-PR review, unresolved comments, and CI | P2 fixed: SSE progress/token/error emission now tolerates a client cancellation racing an enqueue, so the catch path cannot throw while reporting the original stream error. No additional high-confidence defect was found in the six-file diff. | Focused SSE and search utility Vitest (13/13); TypeScript; focused Prettier. Hosted advisory browser failure was shared stale assertion drift and is rerun after this push. |\n+| 2026-07-11 | PR #483 / claude/differentials-page-review-a3daaf | 36cca1bf7c13718dcc60a61b75272c7c4fa5cd44 | open-PR review, unresolved comments, and CI | P2 fixed: authenticated diagnosis detail responses now derive related links, overlap links, and comparison presentation from the owner's current diagnosis and presentation rows rather than the bundled snapshot. Added an owner-only catalog regression test. No additional high-confidence defect was found in the changed scope. | Focused differentials route/catalog Vitest (26/26); TypeScript; focused Prettier; `git diff --check`. Production readiness ran fail-closed with provider variables cleared and reported only expected missing provider configuration. |\n+| 2026-07-11 | PR #489 / claude/document-viewer-redesign-55b68b | 9130c8b15a22dbbc965464a247ae930c04f2da62 | open-PR review, unresolved comments, and CI | P2 fixed: document deep links now expand the mobile indexed-text details and scroll the branch-specific visible mobile or desktop chunk instead of the first duplicated DOM match. Added focused desktop/mobile assertions. No additional high-confidence defect was found in the three-file diff. | Focused Prettier; TypeScript; `git diff --check`. Browser proof delegated to hosted CI because Turbopack rejects the isolated worktree's external node_modules junction. |\n+| 2026-07-11 | PR #488 / claude/code-review-42a2c3 | 7a8ea145013444f7cc29631499f48a8b0454937a | open-PR review, unresolved comments, and CI | Confirmed the remaining public error-code finding was already fixed at the reviewed head. Added the two focused advisory UI assertion stabilizations required by the hosted failure logs; no additional high-confidence defect was found in the changed scope. | `tests/http-error-response.test.ts` (3/3); Prettier check on affected files; `git diff --check`; hosted required CI passed before the test-only fix. Browser rerun deferred to hosted CI because Turbopack rejects the isolated worktree's external node_modules junction. |\n+| 2026-07-11 | PR #473 / claude/mobile-search-bar-popup-bx163m | 7cef01852a9713ec51184578868212df5805adbf | open-PR review, unresolved comments, and CI | P1 merge-conflict markers removed from the shared search header while retaining the all-viewport hero portal and inline fallback. P2 fixed: phone-hidden command results can no longer open, report expanded state, receive keyboard navigation, or execute an invisible selection. The launcher and global-shell conflict findings were already resolved at the reviewed head. | No conflict markers; TypeScript; focused Prettier; app-mode/search/universal-search Vitest (37/37); `git diff --check`. Browser proof delegated to hosted CI because Turbopack rejects the isolated worktree's external node_modules junction. |\n+| 2026-07-11 | PR #461 / claude/differentials-search-ux-polish-f2ff06 | 8bf455325b0915898417dd66aa61d419080c5528 | open-PR review, unresolved comments, and CI | Preserved diagnosis selections through workflow-aware comparison routing, constrained cross-workflow IDs to supported candidates, and removed comparison controls from presentation rows. Restored all four required core UI smoke markers and hardened answer/search mocks against invalid payloads and stale-response races. | Focused differential Vitest (22/22); TypeScript; full required CI, advisory Chromium, CodeRabbit, Semgrep, Gitleaks, and GitGuardian passed on the final head. |\n+| 2026-07-11 | PR #485 / claude/home-answer-page-layout-rtx10n | 96dbd0394888d5a52c916dba52b94d0f83e4507e | open-PR review and CI | Integrated the all-viewport hero composer, retained the compact hero scale, made composer width continuous across 1024px, and restored a mobile centering height floor. Review ledger SHAs were expanded to full IDs and source guards cover the layout invariants. | Focused source guards (30/30); TypeScript; full Vitest (1,594 passed, 1 skipped); required and advisory UI, build, static, unit, CodeRabbit, Semgrep, Gitleaks, GitGuardian, and post-merge main CI passed. |\n+| 2026-07-11 | PR #481 / claude/perf-r2-auth-roundtrip | 24fad070fb9834510309e74e1dc0e216cd08646b | main-integration follow-up | The stacked PR had merged into an already-merged feature base, so its reviewed delta was not present on `main`. Replayed only PR #481's first-parent patch onto current `main`, preserving current answer-route behavior while adding client payload trimming and cookie-authenticated proxy refresh coverage. | `npm run verify:cheap`; focused proxy/payload/clinical-safety Vitest (18/18); `npm run check:production-readiness:ci`; focused Prettier; `git diff --check`. |\ndiff --git a/docs/codebase-index.md b/docs/codebase-index.md\nindex bc47dabb471d99b33cc98f0b6b1e80d28e51f8f4..4bbbda55a75a7766d69075c0c03a3dbe6798897d 100644\n--- a/docs/codebase-index.md\n+++ b/docs/codebase-index.md\n@@ -19,141 +19,143 @@ Structured map for AI agents and onboarding. For live routes, see `docs/site-map\n \n ---\n \n ## Top-level layout\n \n | Path | Purpose |\n | ----------- | ---------------------------------------------------------------- |\n | `src/` | Next.js App Router UI, API routes, shared lib, components |\n | `supabase/` | SQL migrations, schema mirror, Edge Functions, CLI config |\n | `worker/` | Local ingestion worker (parse, OCR, chunk, embed, DB writes) |\n | `scripts/` | CLI ops: reindex, eval, backfill, governance, dev-server helpers |\n | `tests/` | Vitest unit (`*.test.ts`) + Playwright E2E (`ui-*.spec.ts`) |\n | `docs/` | Runbooks, governance, search/RAG plans, generated sitemap |\n | `public/` | Static assets (`public/llms.txt`) |\n | `.github/` | CI workflows, PR template (clinical governance preflight) |\n \n **Do not commit:** `.next/`, `node_modules/`, `coverage/`, `.env*`, `sample-documents/`, logs.\n \n ---\n \n ## Application architecture\n \n ### Shell and routing\n \n - **Root layout:** `src/app/layout.tsx` — fonts, `AuthProvider`, global CSS\n-- **App shell:** `src/app/app-shell-client.tsx` — `GlobalSearchShell` via `src/lib/shell-route-config.ts`\n+- **App shell:** `src/components/clinical-dashboard/global-search-shell.tsx` — route-aware standalone shell and lazy dashboard dispatch via `global-mockup-search-shell.tsx`\n - **Home:** `src/app/page.tsx` — dashboard rendered by shell\n - **Dashboard:** `src/components/ClinicalDashboard.tsx` + `src/components/clinical-dashboard/`\n - **Modes (8):** `src/lib/app-modes.ts` — answer, documents, services, forms, favourites, differentials, prescribing, tools\n \n ### Product pages (`src/app/`)\n \n | Route | File |\n | ---------------------------------------------------- | -------------------------------------- |\n | `/` | `src/app/page.tsx` |\n | `/applications` | `src/app/applications/page.tsx` |\n | `/differentials`, `/diagnoses`, `/presentations` | `src/app/differentials/` |\n | `/documents/search`, `/source`, `/evidence`, `/[id]` | `src/app/documents/` |\n | `/favourites` | `src/app/favourites/page.tsx` |\n | `/forms`, `/forms/[slug]` | `src/app/forms/` |\n | `/medications`, `/medications/[slug]` | `src/app/medications/` |\n | `/services`, `/services/[slug]` | `src/app/services/` |\n | `/mockups/*` | `src/app/mockups/` (404 in production) |\n | `/auth/callback` | `src/app/auth/callback/route.ts` |\n \n ### API routes (`src/app/api/`)\n \n | Area | Routes | Entry files |\n | ----------- | ----------------------------------------------------------------------- | ----------------------------------------------- |\n | Answers | `/api/answer`, `/api/answer/stream` | `answer/route.ts`, `answer/stream/route.ts` |\n | Search | `/api/search`, `/api/search/interaction` | `search/` |\n | Upload | `/api/upload` | `upload/route.ts` |\n | Documents | CRUD, bulk, reindex, labels, search, summarize, table-facts, signed-url | `documents/` |\n | Ingestion | batches, jobs, retry, quality | `ingestion/` |\n | Registry | records CRUD | `registry/records/` |\n | Images | signed URLs | `images/[id]/signed-url/route.ts` |\n | Ops | health, setup-status, local-project-id | `health/`, `setup-status/`, `local-project-id/` |\n | Eval / jobs | eval cases, job state | `eval-cases/`, `jobs/` |\n \n ---\n \n ## `src/lib/` module map\n \n ### RAG, retrieval, answers\n \n-| Module | Role |\n-| ----------------------------------------------------------------------------------------------------------------------- | ------------------------------------------ |\n-| `rag.ts` | Main answer pipeline orchestrator |\n-| `rag-routing.ts`, `rag-provider.ts`, `rag-answer-text.ts`, `smart-rag-api.ts` | Model routing, provider modes, API surface |\n-| `clinical-search.ts`, `clinical-query-mode.ts`, `retrieval-selection.ts` | Query modes and retrieval selection |\n-| `answer-ranking.ts`, `answer-verification.ts`, `answer-formatting.ts`, `answer-follow-up.ts`, `answer-render-policy.ts` | Answer quality and rendering |\n-| `citations.ts`, `cross-document-synthesis.ts`, `evidence-relevance.ts` | Evidence and synthesis |\n-| `ranking-config.ts`, `search-scope.ts`, `rag-eval-cases.ts` | Ranking tuning and eval fixtures |\n+| Module | Role |\n+| ----------------------------------------------------------------------------------------------------------------------- | ------------------------------------------------- |\n+| `rag.ts` | Main answer pipeline orchestrator |\n+| `rag-routing.ts`, `rag-provider.ts`, `rag-answer-text.ts`, `smart-rag-api.ts` | Model routing, provider modes, API surface |\n+| `rag-contracts.ts`, `rag-answer-support.ts`, `rag-query-guard.ts` | Shared RAG contracts and pure answer/query policy |\n+| `rag-cache.ts`, `rag-retrieval-variants.ts` | Bounded caches and retrieval variants |\n+| `clinical-search.ts`, `clinical-query-mode.ts`, `retrieval-selection.ts` | Query modes and retrieval selection |\n+| `answer-ranking.ts`, `answer-verification.ts`, `answer-formatting.ts`, `answer-follow-up.ts`, `answer-render-policy.ts` | Answer quality and rendering |\n+| `citations.ts`, `cross-document-synthesis.ts`, `evidence-relevance.ts` | Evidence and synthesis |\n+| `ranking-config.ts`, `search-scope.ts`, `rag-eval-cases.ts` | Ranking tuning and eval fixtures |\n \n ### Ingestion and indexing\n \n | Module | Role |\n | ----------------------------------------------------------------------- | -------------------------------- |\n | `ingestion.ts`, `ingestion-recovery.ts`, `ingestion-mutation-safety.ts` | Job queue semantics and recovery |\n | `chunking.ts`, `extractors/document.ts` | Text extraction and chunking |\n | `document-index-units.ts`, `document-enrichment.ts`, `deep-memory.ts` | Index artifacts and enrichment |\n | `visual-intelligence.ts`, `image-filtering.ts` | Image captioning and filtering |\n | `index-quality.ts`, `indexing-coverage.ts`, `model-index-extraction.ts` | Index quality gates |\n | `reindex-pipeline.ts`, `reindex-eval-gate.ts`, `bulk-import.ts` | Atomic reindex and bulk import |\n \n ### Source governance and metadata\n \n | Module | Role |\n | ------------------------------------------------------------------------------ | -------------------------------- |\n | `source-metadata.ts`, `source-governance.ts`, `source-text-sanitizer.ts` | Source provenance and governance |\n | `document-label-governance.ts`, `document-tags.ts`, `document-organization.ts` | Labels and organization |\n | `table-review.ts`, `accessible-table-normalization.ts` | Table facts |\n \n ### Supabase, auth, env\n \n | Module | Role |\n | ------------------------------------------------------------------------------------ | ---------------------------- |\n | `supabase/client.tsx`, `server.ts`, `admin.ts`, `auth.ts`, `health.ts`, `project.ts` | Clients and auth |\n | `supabase/database.types.ts` | Generated DB types |\n | `env.ts` | Zod-validated environment |\n | `owner-scope.ts`, `query-privacy.ts`, `privacy.ts`, `audit.ts` | Multi-user scope and privacy |\n \n ### Clinical product data\n \n | Module | Role |\n | -------------------------------------------------------------------- | ------------------------- |\n | `differentials.ts`, `forms.ts`, `services.ts`, `registry-records.ts` | Registry-backed content |\n | `clinical-safety.ts`, `demo-data.ts`, `ui-copy.ts` | Safety copy and demo mode |\n \n ### Infra helpers\n \n-| Module | Role |\n-| ------------------------------------------------------------------------------- | ------------------------------------------------------------- |\n-| `openai.ts`, `embedding-dimensions.ts`, `api-rate-limit.ts` | External APIs and rate limits |\n-| `validation/` | `body.ts`, `query.ts`, `params.ts`, `http.ts`, `form-data.ts` |\n-| `shell-route-config.ts`, `document-flow-routes.ts`, `local-project-identity.ts` | Routing and project identity |\n+| Module | Role |\n+| ------------------------------------------------------------------------------------------------ | ------------------------------------------------------------- |\n+| `openai.ts`, `embedding-dimensions.ts`, `api-rate-limit.ts` | External APIs and rate limits |\n+| `validation/` | `body.ts`, `query.ts`, `params.ts`, `http.ts`, `form-data.ts` |\n+| `app-modes.ts`, `document-flow-routes.ts`, `local-project-identity.ts`, `local-server-utils.mjs` | Routing and project identity |\n \n ---\n \n ## Supabase\n \n ### Config and schema\n \n - **CLI:** `supabase/config.toml` — `indexing-v3-agent` function, `verify_jwt = false`\n - **Schema mirror:** `supabase/schema.sql` (reference; migrations are source of truth)\n - **Migrations:** `supabase/migrations/*.sql` (~90 files, May–Jul 2026)\n - **Drift policy:** `docs/supabase-migration-reconciliation.md`\n \n ### Core tables\n \n `documents`, `document_pages`, `document_images`, `document_chunks`, `document_embedding_fields`, `document_index_units`, `document_table_facts`, `document_labels`, `document_summaries`, `document_sections`, `document_memory_cards`, `document_index_quality`, `ingestion_jobs`, `ingestion_job_stages`, `indexing_v3_agent_jobs`, `import_batches`, `rag_queries`, `rag_query_misses`, `rag_aliases`, `rag_response_cache`, `rag_retrieval_logs`, `clinical_registry_records`, `api_rate_limits`, `audit_logs`, `storage_cleanup_jobs`\n \n **Storage buckets:** `clinical-documents`, `clinical-images` (private)\n \n ### Migration themes\n \n | Theme | Examples |\n | --------------------------------- | --------------------------------------------------------------------------------------------------------------- |\n | Bulk ingestion and job queue | `20260527000000_bulk_ingestion.sql`, `20260616001000_ingestion_job_state_rpcs.sql` |\n | Hybrid retrieval RPCs | `20260607183245_search_trigram_indexes_and_response_cache.sql`, `20260701140631_codify_live_retrieval_rpcs.sql` |\n | Embeddings / HNSW | `20260623014639_finalize_embedding_fields_hnsw_health.sql` |\ndiff --git a/docs/database-drift-detection.md b/docs/database-drift-detection.md\nindex 852291ec0970991f59f0a70e852e48e2c2a1ffbd..c64fcf327e7f3085f7c2f51d0d8fd57d56eea67f 100644\n--- a/docs/database-drift-detection.md\n+++ b/docs/database-drift-detection.md\n@@ -1,28 +1,28 @@\n # Database drift detection (`npm run check:drift`)\n \n-Last updated: 2026-07-07\n+Last updated: 2026-07-10\n \n This repo's worst operational incidents were live-vs-repo schema drift: hybrid\n retrieval RPCs silently broken on live for an unknown period, and migrations\n recorded as applied whose objects were absent. `search_schema_health()` guards\n a curated subset (signatures, 22 required indexes, execution smoke).\n `check:drift` generalizes that into a full-inventory comparison of **every**\n application-owned object against `supabase/schema.sql`.\n \n ## How it works\n \n Three committed artifacts:\n \n | Artifact | Role |\n | -------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |\n | `supabase/migrations/20260706200000_schema_drift_snapshot.sql` | `public.schema_drift_snapshot()` — service-role-only RPC returning the normalized live inventory (also declared in `supabase/schema.sql`; a test enforces byte parity). |\n | `supabase/drift-manifest.json` | The expected state: the same snapshot captured from a **from-scratch replay of `supabase/schema.sql`** into a disposable `supabase/postgres` Docker container (`npm run drift:manifest`). Embeds the sha256 of the schema.sql it came from. |\n | `supabase/drift-allowlist.json` | Known, documented divergence (each entry has a `reason`). Reported as warnings; anything not listed fails the check. |\n \n `npm run check:drift` (needs live service-role env) verifies the project ref,\n fails fast if the manifest is stale, calls the RPC, diffs, applies the\n allowlist, and exits 1 on unallowlisted divergence. The offline half runs in\n `tests/drift-detection.test.ts` under `verify:cheap`: manifest freshness\n (sha256), migration↔schema.sql parity for the snapshot function, allowlist\n hygiene, and unit tests of the comparison engine.\n \n@@ -77,75 +77,89 @@ live inventory. 166 divergent keys, fully classified:\n 3 `content_not_blank` NOT VALID checks, autovacuum reloptions on 5 RAG\n tables, `content_hash` nullability alignment, 4 live-only functions\n (`set_owner_id_from_auth_uid` + rag_queries/misses triggers,\n `purge_expired_rag_queries`, `correct_clinical_query_terms`,\n `invoke_ingestion_worker`) and 2 ACL tightenings; schema.sql function/policy\n text realigned to the migration-chain truth for `analyze_rag_tables`,\n `claim_indexing_v3_agent_jobs`, `is_committed_artifact_generation(uuid,jsonb)`,\n `match_document_memory_cards_hybrid`, and 6 owner-read policies (operand\n order only).\n - **Allowlisted (124 entries)** — see `supabase/drift-allowlist.json`; backlog\n below.\n \n ## Reconciliation backlog\n \n Ordered; each item removes allowlist entries when it lands. Items touching the\n live project need explicit operator approval.\n \n > **2026-07-08 update:** the safe pending migrations were **applied to live**\n > (`20260706010000`, `20260706130000`, `20260706200000`, `20260707000000`, and\n > `20260708000000` re-applying `20260703030000`'s storage-index effects — items 1\n > and 2 below are DONE, verified byte-faithful + site retrieval green).\n > `20260705210000` was **NOT applied and was neutralized** — the investigation\n > found live had diverged _forward_ from its retrieval bodies (item 0, new).\n > Live is under active concurrent multi-session editing, so the allowlist is a\n > point-in-time snapshot needing periodic regeneration.\n+>\n+> **2026-07-10 update:** local `check:drift` surfaced five repo-ahead live debts\n+> for the July 8 hardening batch: fail-closed `retrieval_owner_matches`, R17's\n+> one-open-ingestion-job index, and R5's document metadata deep-merge helpers /\n+> `commit_document_index_generation` body. These are now allowlisted as known\n+> pending live-apply work. Applying them to live remains an explicit\n+> operator-approved migration action.\n \n 0. **NEW — forward-codify the live-ahead retrieval RPCs** (was the \"apply\n 20260705210000\" item, inverted). Live carries newer raw-SQL retrieval bodies\n than the repo: `match_document_chunks` (hnsw.ef_search=100 plpgsql wrapper),\n `match_document_chunks_text` / `match_document_table_facts_text` (richer\n multi-strategy), `match_document_chunks_hybrid` (left-join quality_score),\n plus `match_documents_for_query`, `get_related_document_metadata`,\n `match_document_memory_cards_hybrid`, `repair_strict_enrichment_gate_batch`.\n Applying the OLD `20260705210000` bodies would regress live, so it is\n neutralized. Codify the **live** bodies into schema.sql + a new migration (a\n generation script, not hand-editing — the bodies are complex and actively\n churning) so the repo matches live and a `db push` never regresses it. These\n are the currently-allowlisted retrieval entries.\n - **Partially reconciled 2026-07-08:** `retrieval_owner_matches` was in this\n group by mistake — its **body is identical** to schema.sql; it only drifted\n on `search_path` (live `pg_catalog` vs repo `pg_temp`) and ACL. The\n search_path half is now codified into schema.sql + the manifest `def_hash`\n (verified read-only against live via `schema_drift_snapshot`); only the\n PUBLIC-execute ACL remains allowlisted, same as `search_document_chunks`.\n 1. ✅ **DONE 2026-07-08** — applied `20260706010000`, `20260706130000`,\n `20260706200000`, `20260707000000` to live (verified). `check:drift` can now\n run against live once a service-role key is available in the environment.\n 2. ✅ **DONE 2026-07-08** — `20260703030000`'s effects (recorded-but-absent on\n live) re-applied via `20260708000000_reapply_storage_cleanup_jobs_indexes`;\n live storage_cleanup_jobs indexes now match schema.sql.\n+ 2a. **Apply the remaining July 8 hardening batch to live**: run the approved\n+ migration workflow for `20260708160001_retrieval_owner_matches_fail_closed`,\n+ `20260708170000_ingestion_jobs_one_open_per_document`, and\n+ `20260708310000_r5_document_metadata_merge`. Remove the matching allowlist\n+ entries for `retrieval_owner_matches`, `ingestion_jobs_one_open_per_document_uidx`,\n+ `jsonb_merge_deep`, `apply_document_metadata_patch`, and\n+ `commit_document_index_generation` after `check:drift` verifies live parity.\n 3. **Codify the remaining live-only functions**: `get_visual_evidence_cards`,\n `repair_enrichment_quality_batch`, `run_all_visual_eval_cases`,\n `run_visual_eval_case` (same pattern as `20260707000000`).\n 4. **Authenticated-grant posture decision**: live revoked the authenticated\n Data API grants on 17 tables (fail-closed hardening; the owner-read RLS\n policies are currently dead on live) while schema.sql still declares them.\n Either codify the revokes (schema.sql + tests + migration) or restore the\n grants live.\n 5. **PUBLIC-execute revokes**: 4 security-invoker functions retain default\n PUBLIC execute on live (`detect_legacy_ivfflat_indexes`,\n `document_summary_text`, `search_document_chunks`,\n `set_document_embedding_field_content_hash`).\n 6. **`document_label_metadata` direction**: schema.sql is AHEAD (hidden-label\n filtering added without a migration). Ship the migration or revert.\n 7. **Index estate**: rename 10 legacy-named live indexes to schema.sql names;\n decide the 24 schema.sql-declared indexes absent on live (recreate vs\n remove — includes `documents_search_idx`, `document_chunks_anchor_idx`,\n `documents_owner_content_hash_unique_idx`); drop ~45 live-only duplicate\n indexes after `pg_stat_user_indexes` scan verification; reshape 3\n (`import_batches_status_created_idx`, `ingestion_jobs_document_status_idx`,\n `ingestion_jobs_status_next_run_idx`).\n 8. **Constraints**: ~~add `ingestion_job_stages_job_id_fkey` to live~~ —\n **reversed (R24e, 2026-07-08):** the FK was **removed from `schema.sql`**\n (migration `20260708140000`) instead of added to live. Live has ~253 orphan\n stage rows and 0 rows whose `job_id` resolves to an `ingestion_jobs` row, and\ndiff --git a/docs/deployment-architecture.md b/docs/deployment-architecture.md\nindex 3bb2ccbac5f1e206302bfa69653f49ab4be2b19a..b2130c7b07fdb03671a4d80887c4064fb0b1184d 100644\n--- a/docs/deployment-architecture.md\n+++ b/docs/deployment-architecture.md\n@@ -47,53 +47,56 @@ latency would multiply across the per-answer fan-out).\n - **In-memory coalescing and caches are load-bearing.** The answer pipeline\n coalesces identical in-flight questions (`answer_inflight_coalesced` in\n `src/lib/rag.ts`) and holds LRU answer/search caches\n (`RAG_ANSWER_CACHE_TTL_MS`/`RAG_ANSWER_CACHE_SIZE`). Serverless isolates get\n one request each, so coalescing never fires and every duplicate ward-round\n question pays the full ~6-RPC fan-out plus an OpenAI generation.\n - **Fire-and-forget background work.** Cache invalidation and telemetry writes\n run as `void (async () => ...)` after the response; serverless platforms may\n freeze the isolate at response end.\n - **Long requests.** The strong answer route runs up to\n `OPENAI_ANSWER_TIMEOUT_MS` (30 s) plus retrieval; streaming responses run\n longer. That is hostile to per-request serverless billing/limits.\n - **Connection amplification.** Many cold instances multiply concurrent\n PostgREST/auth traffic against a database whose auth server is capped at 10\n absolute connections (see `docs/capacity-review.md`).\n \n Scale-out plan: stay at 1 instance (vertical scaling first) until sustained\n load demands more; replicas are safe but dilute in-memory coalescing, so add\n them only after the shared `rag_response_cache` hit rate is confirmed healthy.\n \n ### Image contract (`Dockerfile`)\n \n - `node:24-bookworm-slim` in all stages — respects `engines`/`engine-strict`\n and the `preinstall` engine guard.\n - The build stage runs the repo's own `npm run build`\n- (`guard-next-build.mjs` + `next build --webpack`) — **the image build fails\n- exactly where a local build would**. The build allocates an 8 GiB heap; give\n- the Docker builder ≥ 10 GiB memory.\n+ (`guard-next-build.mjs` + `next build --webpack` + the client-bundle secret\n+ scan) — **the image build fails exactly where a local build would**. The\n+ `--webpack` flag is deliberate: `next.config.ts` carries a webpack-specific\n+ WasmHash workaround and the CSP-nonce work was validated against webpack\n+ prod chunks, so switching bundlers needs its own verified change. The build\n+ allocates an 8 GiB heap; give the Docker builder ≥ 10 GiB memory.\n - `NEXT_PUBLIC_SUPABASE_URL` and `NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY` are\n build args (they inline into the client bundle). The publishable key is\n public by design; the placeholder default exists so CI can build without\n secrets. **Production images must be built with the real publishable key.**\n - Runtime is a non-root `node` user, prod-only `node_modules`, direct\n `next start -H 0.0.0.0 -p $PORT` (the local port-picker script is\n deliberately bypassed), and a `HEALTHCHECK` against `/api/health`.\n - No secret is ever baked into a layer. `SUPABASE_SERVICE_ROLE_KEY`,\n `OPENAI_API_KEY`, etc. are injected at run time by the host's secret store.\n \n Minimal Fly config (create at deploy time; not committed until an app is\n provisioned):\n \n ```toml\n # fly.toml (sketch — values fixed at provisioning time)\n app = \"clinical-kb\"\n primary_region = \"syd\"\n [build]\n [env]\n PORT = \"3000\"\n [http_service]\n internal_port = 3000\n force_https = true\n min_machines_running = 1 # keep the warm instance: caches + coalescing\n auto_stop_machines = false # no scale-to-zero: cold starts defeat the SLOs\n@@ -191,44 +194,45 @@ Rules:\n \n - Secrets never enter images, the repo, or `NEXT_PUBLIC_*` names. `.env.local`\n is a local-dev convenience only.\n - Each environment (production, staging, CI) gets **separate** service-role and\n OpenAI keys so rotation and blast radius stay per-environment.\n - Rotation: publishable-key rotation is already an operator runbook item\n (`docs/archive/operator-decisions-2026-07-04.md`); service-role rotation is a\n Supabase dashboard action + host secret update + redeploy.\n - `npm run check:supabase-project` runs after any Supabase env change (repo\n rule), and the eval canary runs it before every scheduled eval.\n \n ## 5. Staging environment\n \n - **A second, dedicated Supabase project** (same org, ap-southeast-2) — not a\n branch of production. Rationale: staging must absorb soak tests, destructive\n ingestion experiments, and migration rehearsal without any shared compute,\n pooling, or the production auth 10-connection cap; per-environment keys fall\n out naturally.\n - Seeded via the existing pipeline (`npm run import:docs`, `registry:seed`,\n `differentials:seed`, `medications:seed`) with a small (~50-document)\n synthetic/public corpus. `public/demo-documents/` plus generated samples\n (`npm run samples`) are sufficient for load-shape realism; do not copy\n clinical production documents into staging.\n - One staging app container + one staging worker container from the _same_\n images, different env. `RAG_PROVIDER_MODE=auto` with staging OpenAI key.\n-- **Known change required:** `src/lib/supabase/project.ts` pins the expected\n- project to production, so `check:supabase-project` will (correctly) fail on\n- staging until the expected-project table is made environment-aware. Do this\n- when the staging project is provisioned — a deliberate speed bump so staging\n- cannot silently be pointed at production.\n+- `src/lib/supabase/project.ts` is staging-aware only when both\n+ `SUPABASE_STAGING_PROJECT_REF` and `SUPABASE_STAGING_PROJECT_NAME` are set.\n+ The declared staging ref must differ from production and every stale project;\n+ otherwise `check:supabase-project` fails closed. See `docs/staging-setup.md`.\n - The soak test (`scripts/soak-test.ts`) targets staging **only** — see\n `docs/capacity-review.md`.\n \n ## 6. Rollout and rollback\n \n-- Images are built from `main` (CI job to be added once a host account\n- exists), tagged with the git SHA, and deployed after the standard gates\n+- `.github/workflows/docker-image.yml` validates both container builds on\n+ `main`, release branches, a weekly schedule, and container-affecting pull\n+ requests. It deliberately does not push to a registry; registry publication\n+ and deployment remain host-specific release steps after the standard gates\n (`verify` + `ui-smoke` + the clinical governance preflight where relevant).\n - Rollback = redeploy the previous image tag. Database migrations follow the\n existing rule: committed migrations + `schema.sql` reconciliation only, never\n raw SQL against live.\n - The nightly eval canary (`.github/workflows/eval-canary.yml`) is the standing\n guard that retrieval/answer quality did not silently regress after any\n deploy — see `docs/observability-slos.md`.\ndiff --git a/docs/operator-apply-july8-batch.md b/docs/operator-apply-july8-batch.md\nindex 6c6afe2daf0d7aabc04533fedae17582424c5b2e..a011ebdce981e4762383dd4d6b5db03cee53bce2 100644\n--- a/docs/operator-apply-july8-batch.md\n+++ b/docs/operator-apply-july8-batch.md\n@@ -1,76 +1,76 @@\n # Operator apply — July 8 ingestion & tenancy batch\n \n Consolidated runbook for migrations merged to `main` in PRs **#380**, **#405**,\n **#408**, and **#409** that are **in the repo but not yet verified on live** as\n of 2026-07-09. Companion to\n [`docs/supabase-migration-reconciliation.md`](supabase-migration-reconciliation.md)\n and [`docs/ingestion-concurrency-fix-workorder.md`](ingestion-concurrency-fix-workorder.md).\n \n ## Pre-flight\n \n - Live env vars must target **production** (verify with `npm run check:supabase-project`). `npm run check:july8-live-batch` refuses staging or other non-production targets so a green probe cannot mask an unapplied production database. Set `SUPABASE_ENVIRONMENT=production` (or leave unset — production is the default).\n \n ```bash\n npx supabase migration list --linked\n npm run supabase:recovery-status # or npm run check:supabase-project\n npm run reindex:health # jobs_pending = 0 AND jobs_processing = 0 before R17\n ```\n \n Do **not** redeploy the ingestion worker from current `main` until step 2 below\n is live — `worker/main.ts` already passes `p_worker_id` to completion RPCs.\n \n ## Apply order\n \n All steps below are safe through a single `supabase db push` when the ingestion\n queue is quiet. R17 uses its **own migration version** (`20260708170000`, not\n-`20260708160000`) so history/repair cannot collide with the fail-closed tenancy\n-migration at `20260708160000`.\n+`20260708160001`) so history/repair cannot collide with the fail-closed tenancy\n+migration at `20260708160001`.\n \n | Step | Migration | What | How |\n | ---- | --------------------------------------------------------- | -------------------------------------------- | ---------------------------------------------- |\n | 1 | `20260708140000_drop_ingestion_job_stages_job_id_fk.sql` | R24e — drop phantom FK from fresh-env schema | Normal `supabase db push` (no-op on live) |\n | 2 | `20260708130000_ingestion_concurrency_rpc_hardening.sql` | R1/R2 lease fences, R7/R9/R23 RPC hardening | Normal push — **apply before worker redeploy** |\n | 3 | `20260708150000_ensure_retrieval_owner_matches.sql` | Ensure helper exists before fail-closed | Normal push |\n-| 4 | `20260708160000_retrieval_owner_matches_fail_closed.sql` | Tenancy fail-closed (#409) | Normal push |\n+| 4 | `20260708160001_retrieval_owner_matches_fail_closed.sql` | Tenancy fail-closed (#409) | Normal push |\n | 5 | `20260708310000_r5_document_metadata_merge.sql` | R5 metadata deep-merge (#408) | Normal push (safe before worker) |\n | 6 | `20260708170000_ingestion_jobs_one_open_per_document.sql` | R17 one-open-job index (#405) | Normal push when queue quiet — see below |\n \n Reindex routes for R17 (409 on duplicate job) are already on `main`.\n \n ### R17 on a busy live queue (optional)\n \n When `jobs_pending` / `jobs_processing` are non-zero, or you want a lock-free\n build, apply the index manually **before** recording migration history:\n \n ```sql\n create unique index concurrently if not exists ingestion_jobs_one_open_per_document_uidx\n on public.ingestion_jobs (document_id)\n where status in ('pending', 'processing');\n ```\n \n-Then mark only the R17 version as applied (never `20260708160000`):\n+Then mark only the R17 version as applied (never `20260708160001`):\n \n ```bash\n supabase migration repair --linked --status applied 20260708170000\n ```\n \n If the queue is quiet, skip the manual SQL — step 6 in the table applies the\n transactional `CREATE UNIQUE INDEX` via `db push`.\n \n ## Post-apply verification\n \n ```bash\n SUPABASE_ENVIRONMENT=production npm run check:july8-live-batch # requires live keys — fails if absent or staging\n npm run check:drift\n npm run check:indexing\n npm run eval:retrieval:quality # must stay 36/36 (retrieval-affecting: step 4 only)\n ```\n \n Then redeploy the ingestion **worker** so R5 merge + `p_worker_id` fences are\n active end-to-end.\n \n ## Probe semantics (`check:july8-live-batch`)\n \n | Check | Pass means |\n | ---------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |\n | `retrieval_owner_matches(null, …)` | Returns **false** (fail-closed live) |\ndiff --git a/docs/process-hardening.md b/docs/process-hardening.md\nindex 1043f28e3e63b917e50fedc7c91f2b37f366e48f..f9d9cd98aab4ec2a041b1eb4e680b9bade20837f 100644\n--- a/docs/process-hardening.md\n+++ b/docs/process-hardening.md\n@@ -1,35 +1,36 @@\n # Process Hardening Plan\n \n This document turns the current process review into phased, durable repo practice. It separates changes that already take effect from work that should stay explicit until it is implemented.\n \n ## Phase 1 - Active now\n \n - `npm run verify:cheap` is the default broad local gate for source/config/test changes: `check:runtime`, `sitemap:check`, lint, typecheck, and unit tests.\n+- `npm run verify:pr-local` is the closest local mirror of the normal PR gate: runtime, format, lint, typecheck, unit tests, conditional build, and offline RAG preflight when changed-file scope requires it. Local scope resolves against the repository default base rather than a feature-branch upstream; set `PR_BASE_REF` explicitly for release-targeted PRs.\n - `npm run verify:ui` is the default UI gate: `check:runtime` plus Chromium Playwright smoke, stress, and accessibility media checks (`test:e2e:chromium`).\n - `npm run verify:release` is the release-confidence gate: `check:runtime`, lint, typecheck, unit tests, build, full Playwright browser matrix, `check:production-readiness`, `governance:release`, and `eval:quality:release` (the last step needs live Supabase and OpenAI keys).\n-- CI runs three parallel PR jobs in the `CI` workflow: `verify` (runtime alignment, dependency vulnerability audit, edge-function typecheck, CI-safe production readiness, `format:check`, lint, typecheck, unit tests with coverage, build), `ui-smoke` (Chromium Playwright against its own dev server), and `db-reset-verify` (Supabase local start plus `supabase db reset` migration replay). The external `Supabase Preview` check also replays the migration chain on branch databases when enabled. A gated `release-browser-matrix` job runs the full Playwright browser set on `main`, `release/*`, manual dispatch, and the weekly schedule.\n+- CI uses a risk-scoped PR gate: `changes` classifies paths, `static-pr` always runs runtime/action/scope/format/lint/typecheck/unit checks, and `pr-required` is the single always-reporting required aggregate. Coverage, build, critical UI smoke, migration replay, safety/config, Codex workflow validation, and the production-backed offline RAG preflight run only when their file scopes apply. UI PRs also run a non-blocking advisory Chromium regression job. The external `Supabase Preview` check may still replay migrations on branch databases when enabled. A gated `release-browser-matrix` job runs the full Playwright browser set on `main`, `release/*`, manual dispatch, and the weekly schedule.\n - `tests/ui-accessibility.spec.ts` covers reduced-motion and forced-colors dashboard usability so those modes are no longer only reviewed by inspection.\n - `tests/ui-tools.spec.ts` covers the Applications dashboard mode at mobile and desktop sizes, including the `/applications` compatibility redirect.\n - `AGENTS.md` now points future agents to these gates and to this document.\n \n ## Phase 2 - Active now\n \n - Previous deterministic smoke failures are reclassified as resolved in the current Chromium UI gate: `npm run verify:ui` passed 26/26 on June 23, 2026.\n - Local scratch and visual-capture output are excluded from Prettier through `.prettierignore` so generated investigation files do not block the format gate.\n - Pull requests now include a clinical governance preflight for ingestion, answer generation, source rendering, privacy, production environment, and clinical-output changes.\n - Applications mode now has dedicated Playwright coverage in the UI gate.\n - `tests/ui-stress.spec.ts` uses a **1000px** desktop viewport (below `lg`) because scope and evidence open in sheets, not side panels, at that width; widening to ≥1024 exercises a different UI path.\n \n ## Phase 3 - Structural cleanup\n \n - [x] Decompose `src/components/ClinicalDashboard.tsx` into the planned `src/components/clinical-dashboard/` modules. **DONE** — all 6 approved render-surface modules extracted (~8.8k → ~4.7k lines); see the progress log below. Only the deferred admin surfaces remain in the monolith.\n - Preserved `data-testid`, `aria-label`, and AST-pinned `ClinicalOutputPanel`/`NaturalLanguageAnswer` contracts across every move (byte-identical sha1 checksum + retargeted AST guards).\n - After decomposition, run `npm run verify:cheap`, `npm run verify:ui`, and focused visual/browser checks against the dashboard and document viewer.\n \n ### Phase 3 progress (started)\n \n - Added `src/components/clinical-dashboard/` as the module boundary.\n - `src/app/page.tsx` now imports `ClinicalDashboard` from the module path (`@/components/clinical-dashboard`) while preserving\n the legacy source declaration file for AST and merge-guard compatibility.\n - **2026-07-03:** extracted `AuthPanel` (+ its solely-consumed auth-email snapshot helpers) into `clinical-dashboard/auth-panel.tsx`. Monolith 7924 → 7800 lines. Per-module gate established: `npm run typecheck` + `npx vitest run tests/clinical-dashboard-merge-artifacts.test.ts tests/rendered-text-formatting.test.ts` + a `data-testid`/`aria-label` sha1 checksum over `ClinicalDashboard.tsx` + `clinical-dashboard/*.tsx` (must be byte-identical before/after each move) + lint + prettier.\n - **2026-07-03:** extracted `answer-content.tsx` — `SourceImage`, `ScopeAndGovernanceNotice`, the answer/source formatters, `SourcePreviewContent`, `NaturalLanguageAnswer`, `UserQuestionBubble`, `KeyClinicalItems` (block 510–1249 against the post-drift monolith), moved verbatim (block diff empty; testid/aria checksum byte-identical). Two shared helpers went to clean homes instead of a monolith↔module cycle: `useMobilePreviewSheet` (+ its media-query snapshot helpers) → new `clinical-dashboard/use-mobile-preview-sheet.ts`, and `comparableAnswerText` → `clinical-dashboard/display-text.ts`. Retargeted the `NaturalLanguageAnswer` AST pin to scan `answer-content.tsx`, and widened `rendered-text-formatting.test.ts` negative scans to the monolith+module corpus (both strengthened, not weakened). Reusable finding: the answer/evidence families' helpers already live in `@/lib/*` and extracted sibling modules, so extractions re-import rather than needing wide monolith exports; only `comparableAnswerText`/`useMobilePreviewSheet` were monolith-internal.\n@@ -106,56 +107,57 @@ All approved render-surface modules are extracted. `ClinicalDashboard.tsx` went\n - **Operator-only:** publishable key rotation (`docs/archive/operator-decisions-2026-07-04.md`).\n \n ## Full-inventory drift detection & DR rehearsal (2026-07-07)\n \n - `npm run check:drift` generalizes the `search_schema_health()` single-hash approach into a full-inventory comparison of every live function (normalized `pg_get_functiondef` hash + ACLs), index, RLS policy, table shape, constraint, trigger, view, and storage bucket against `supabase/schema.sql`. Expected state is `supabase/drift-manifest.json` (generated by `npm run drift:manifest`, which replays schema.sql from scratch into a Docker container — so schema.sql replayability is re-proven on every regeneration); known divergence lives in `supabase/drift-allowlist.json` with per-entry reasons. Offline halves (manifest freshness, migration↔schema.sql snapshot parity, allowlist hygiene, engine unit tests) run in `verify:cheap` via `tests/drift-detection.test.ts`. See [docs/database-drift-detection.md](database-drift-detection.md).\n - The 2026-07-07 three-way audit (live vs schema.sql replay vs migration-chain replay) found 166 divergent keys: worker-written columns existing only on live (codified by `20260707000000`), schema.sql not replayable from scratch (fixed), pending migrations explaining 11 function-body drifts, `20260703030000` **recorded as applied but ineffective on live**, live-revoked authenticated grants, and a large legacy index estate. Full classified backlog in the drift doc.\n - DR rehearsal completed: schema restore ≈ 19 s to a local container, `search_schema_health()` ok and all four hybrid RPCs proven on the restored copy with seeded vectors; measured RPO/RTO and the did-not-survive list are in [docs/disaster-recovery-runbook.md](disaster-recovery-runbook.md). Expand/contract policy for retrieval tables added to [docs/supabase-migration-reconciliation.md](supabase-migration-reconciliation.md).\n - Migration `20260706200000_schema_drift_snapshot.sql` (the snapshot RPC) and `20260707000000_codify_live_observed_drift.sql` were **applied to live 2026-07-08** (see below).\n \n ### Pending-migration apply + retrieval-drift discovery (2026-07-08)\n \n - **Applied to live** (via MCP `apply_migration`, each verified byte-faithful against a Docker replay, `search_schema_health` ok, site retrieval smoke green): `20260706010000` (search_schema_health M13 guard), `20260706130000` (embedding-fields-text owner sentinel — not app-called), `20260706200000` (schema_drift_snapshot RPC — enables `check:drift`), `20260707000000` (codify observed drift — no-op on live), and `20260708000000_reapply_storage_cleanup_jobs_indexes` (re-applies `20260703030000`'s effects, which were recorded-but-absent on live).\n - **`20260705210000_retrieval_owner_filter_sentinel` was NOT applied and was NEUTRALIZED.** The pre-apply investigation found live has **diverged forward** from that migration's retrieval bodies via later raw-SQL work never captured in a migration: `match_document_chunks` carries an `hnsw.ef_search=100` plpgsql wrapper (higher vector recall), and `match_document_chunks_text` / `match_document_table_facts_text` carry richer multi-strategy implementations. Applying it would have **regressed live retrieval quality**. Its owner-sentinel purpose was already live and identical. The correct fix is forward-codification of the live bodies (drift backlog), not applying the old migration.\n - **Live is under active concurrent multi-session editing** — during this work a new `corpus_topic_term_stats` function appeared and `search_schema_health` re-drifted minutes after apply. The drift allowlist is therefore an explicit point-in-time snapshot needing periodic regeneration.\n - `apply_migration` records history rows under a current-UTC version with the passed name (documented churn), not the repo file's version number; re-applying the repo files later is a harmless idempotent no-op.\n \n ### July 8 ingestion & tenancy batch — merged to main, pending live apply (2026-07-09)\n \n PRs **#380**, **#405**, **#408**, **#409** landed ingestion RPC hardening (R1/R2/R7/R9/R23), R17\n one-open-job index, R5 metadata deep-merge, and `retrieval_owner_matches` fail-closed. Migrations are\n in `supabase/migrations/` but **not yet verified on live** as of 2026-07-09. **Do not redeploy the\n ingestion worker from current `main` until `20260708130000` is live** — `worker/main.ts` already\n passes `p_worker_id`. Ordered apply steps, R17 manual `CONCURRENTLY` index, and post-apply probes:\n [`docs/operator-apply-july8-batch.md`](operator-apply-july8-batch.md) · `npm run check:july8-live-batch`.\n \n-## PR merge gate: tiered CI + required checks (2026-07-02)\n+## PR merge gate: risk-scoped CI + required aggregate (2026-07-10)\n \n-- CI is now three parallel PR jobs instead of one serial 6-7 minute job: `verify` (runtime alignment, production dependency audit, edge typecheck, CI-safe production readiness, format, lint, typecheck, unit tests with coverage gate, build), `ui-smoke` (Chromium Playwright smoke against its own dev server), and `db-reset-verify` (local Supabase migration replay). Wall-clock PR feedback drops to the slowest independent gate, and a flaky smoke rerun no longer repeats lint/typecheck/tests/build.\n-- The deployment boot smoke, full browser matrix, live drift check, live eval canary, and Docker image builds remain gated, scheduled, manual, or path-filtered — they are deliberately not normal required checks for every source-only PR.\n-- **Required-check debt: RESOLVED 2026-07-02; updated 2026-07-09.** Branch protection for `main` should require the exact active check contexts for `CI / verify`, `CI / ui-smoke`, `Secret Scan / Gitleaks`, and one migration replay gate. Prefer the external `Supabase Preview` check when it is enabled and reliable; otherwise require `CI / db-reset-verify`. Requiring both replay gates is conservative but usually redundant. Keep `SAST / Semgrep` required only if the repository owner accepts its external-rule/network dependency as part of the normal merge gate. Do not require path-filtered or scheduled/manual contexts such as `Docker image build / app-image`, `Docker image build / worker-image`, `CI / release-browser-matrix`, `Eval Canary`, or `Live drift check`; they can be absent on ordinary PRs and would leave branches stuck at \"Expected - Waiting for status to be reported.\" Keep \"require branches up to date\" OFF unless the branch flow changes, keep `enforce_admins` OFF only as an emergency bypass decision, and avoid requiring duplicate legacy contexts named only `verify` or `ui-smoke` when GitHub already reports the active `CI / ...` contexts.\n-- If `ui-smoke` proves flaky as a required check, demote it to advisory (remove from required contexts) rather than tolerating red merges — the deterministic `verify` gate stays required regardless. If `db-reset-verify` becomes the bottleneck, path-filter it to Supabase migrations/schema/config and database-access code before demoting it entirely.\n+- CI now has one always-reporting required aggregate: `CI / PR required`. The aggregate depends on `changes`, `static-pr`, `safety`, `coverage`, `build`, `ui-critical`, and `db-reset-verify`, then enforces only the jobs whose scopes apply.\n+- `static-pr` is the deterministic baseline for every PR: runtime, action pin check, CI scope self-test, format, lint, typecheck, and unit tests. Coverage, build, safety/config, critical UI, production-backed offline RAG preflight, and migration replay are independent jobs so reruns stay focused. Coverage is limited to `src`/test changes; process-only changes do not trigger builds.\n+- `db-reset-verify` is path-scoped to Supabase migrations/schema/config and database-access code. Do not also require an external Supabase Preview replay unless the repo owner intentionally wants duplicate migration replay.\n+- `ui-critical` is path-scoped to UI/routing/styling/browser-facing changes and runs only the `@critical` Chromium smoke subset. `ui-regression` runs the remaining Chromium cases on UI pull requests as advisory feedback and is deliberately excluded from `pr-required`. The full browser matrix remains main/release/manual/scheduled.\n+- Branch protection for `main` should require `CI / PR required` and `Secret Scan / Gitleaks`. Keep `SAST / Semgrep` required only if the repository owner accepts its external-rule/network dependency as part of the normal merge gate. Do not require path-filtered or scheduled/manual contexts such as `CI / Unit coverage`, `CI / Critical UI smoke`, `CI / Migration replay`, `Docker image build / app-image`, `Docker image build / worker-image`, `CI / release-browser-matrix`, `Eval Canary`, or `Live drift check`; they can be skipped on ordinary PRs and would leave branches stuck at \"Expected - Waiting for status to be reported.\"\n \n ## CSS cascade layering (2026-07-02)\n \n - The custom component classes in `src/app/globals.css` predate cascade layers, so they sat unlayered and silently beat Tailwind v4 utilities (which live in `@layer utilities`) on the same element. This caused three shipped UI bugs: the header source ledger ignoring responsive `hidden`, the composer clear button covering typed text (`pr-*` defeated), and the standalone-home status chips sliding under the mode pill.\n - Conflict-free helper classes (`app-edge-backdrop`, `mobile-app-shell`, `mobile-popover-scroll`, `citation-link`, `animate-skeleton-shimmer`, `focus-ring-premium`, `source-capsule-hover`, `polished-scroll`) now live in `@layer components`, so utilities override them normally. Their call sites were audited for same-property utility collisions before the move.\n - **Header chrome now layered (2026-07-02):** `edge-glass-header` (+ responsive padding), `universal-header`, `universal-header-mode-button`, and `universal-header-icon-control` moved into `@layer components`. The header/mode-pill was the source of the recurring overlap+shadow bugs, so utilities on those elements now win. Reconciliation was three call-site shadow edits (drop the dead `shadow-[var(--shadow-tight)]` on the two `edge-glass-header` headers; drop `shadow-[var(--shadow-inset)]` on the mode button and the New-chat icon control so the layered class supplies the shadow directly). Proven byte-identical across 16 states with `scripts/capture-chrome-parity.ts`.\n - **Verification tooling:** `scripts/capture-chrome-parity.ts` dumps `getComputedStyle` (incl. `::placeholder`/`::after`) for the header+composer chrome across home/answer/focus/document × mobile/desktop × light/dark and diffs two snapshots. **Gotcha:** it is only reliable once the dev server has fully settled on the current CSS — capture right after a hot-reload and it silently compares against the stale bundle. Always capture twice and confirm the two agree before trusting a diff.\n - **Remaining debt (grew with PR #171) — pill portion resolved 2026-07-08:** the COMPOSER chrome (`answer-footer-search-*`, `universal-home-search-edge`/`universal-top-search-edge` (the home-composer edges), `document-mobile-search-pill`, `*-composer-edge`) was intentionally unlayered. #171's frosted rework pushed these from ~19 to ~92 computed-style conflicts, concentrated in the shared `ui-primitives` constants (`chatComposerShell/Input`, `chatSendButton`, `chatComposerIconButton`). The **pill surface** is now layered via a `chatComposerShell` base/delta split (next bullet); the pill-interior controls and the positioning chrome stay unlayered for the reasons below. When adding a utility to a still-unlayered composer-chrome element, check the class body first — the class wins.\n - **Composer PILL surface now layered (2026-07-08):** the base/delta split shipped for the pill. `chatComposerShell` (the pill's shared `ui-primitives` constant) is split into `chatComposerShellBase` (utilities the pill class does NOT set — `flex items-center rounded-full border`) and `chatComposerShellDelta` (utilities the class ALSO sets — `min-h-14 gap-2 border-colour bg px-2 shadow focus-within:border`). `chatComposerShell` stays `base + delta` (byte-identical class set) for any non-layered caller. The pill call sites (`master-search-header.tsx`, `universal-search-command-mockups.tsx`) pass `chatComposerShellBase`, so `.answer-footer-search-pill` (+ `:hover`/`:focus-within`/`@640`) moved into `@layer components` with **zero computed-style change** (16/16 parity states byte-identical). The pill is a `

`, so no global element reset competes with it.\n - **Why the pill-interior controls (`answer-footer-search-input/-send/-action`) were NOT layered — and why the earlier \"reverted, nothing shipped\" attempt misread this:** the controls land on ``/`