\\n\\n\\n\\n\\nView logs for this [Workflow Run ↗︎](https://supabase.com/dashboard/project/fqapdpsewnpnwniwmopy/branches).\\nLearn more about [Supabase for Git ↗︎](https://supabase.com/docs/guides/platform/branching).\\n\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"\\n\\n\\n[![Review Change Stack](https://storage.googleapis.com/coderabbit_public_assets/review-stack-in-coderabbit-ui.svg)](https://app.coderabbit.ai/change-stack/BigSimmo/Database/pull/514?utm_source=github_walkthrough&utm_medium=github&utm_campaign=change_stack)\\n\\n\\n\\n\\n> [!NOTE]\\n> Currently processing new changes in this PR. This may take a few minutes, please wait...\\n> \\n>

\\n>

⚙️ Run configuration

\\n> \\n> **Configuration used**: Organization UI\\n> \\n> **Review profile**: CHILL\\n> \\n> **Plan**: Pro Plus\\n> \\n> **Run ID**: `548a5329-8182-4061-ac05-6a518e363057`\\n> \\n>

\\n> \\n>

\\n>

📥 Commits

\\n> \\n> Reviewing files that changed from the base of the PR and between eca2c84f1d241c4cbb282b8d8f621b2201afbc92 and 10f39fd8a92e03aab569c79e9af29aa11c626d3c.\\n> \\n>

\\n> \\n>

\\n>

📒 Files selected for processing (6)

\\n> \\n> * `src/components/clinical-dashboard/answer-content.tsx`\\n> * `src/lib/rag-answer-text.ts`\\n> * `supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\\n> * `tests/answer-content.test.ts`\\n> * `tests/rag-answer-text.test.ts`\\n> * `tests/source-text-sanitizer.test.ts`\\n> \\n>

\\n> \\n> ```ascii\\n> _________________________________________________________________________________________________________________\\n> < Estimate the order of your algorithms. Get a feel for how long things are likely to take before you write code. >\\n> -----------------------------------------------------------------------------------------------------------------\\n> \\\\\\n> \\\\ (\\\\__/)\\n> (•ㅅ•)\\n> / 　づ\\n> ```\\n\\n\\n\\n\\n\\n

\\n

📝 Walkthrough

\\n\\n## Walkthrough\\n\\nPreformatted answer handling now preserves structured content during sanitization and rendering, supports controlled bold-marker retention, protects safety fragments during compaction, strips bold markers from copy text, and records hybrid retrieval RPC failures through search telemetry.\\n\\n### Changes\\n\\n**Answer display handling**\\n\\n|Layer / File(s)|Summary|\\n|---|---|\\n|**Display sanitization contracts**
`src/components/clinical-dashboard/display-text.ts`, `src/lib/source-text-sanitizer.ts`, `tests/display-text.test.ts`, `tests/source-text-sanitizer.test.ts`|Preformatted normalization, optional bold preservation, and bolded sub-bullet handling are implemented and covered by tests.|\\n|**Answer formatting and safety retention**
`src/components/clinical-dashboard/answer-content.tsx`, `src/lib/rag-answer-text.ts`, `src/lib/answer-render-policy.ts`, `tests/answer-content.test.ts`, `tests/rag-answer-text.test.ts`, `tests/answer-render-policy.test.ts`|Answer formatting accepts display options, retains safety-signal fragments beyond compaction limits, and removes bold markers from copy text.|\\n|**Answer rendering integration**
`src/components/ClinicalDashboard.tsx`, `src/components/clinical-dashboard/answer-result-surface.tsx`, `src/components/clinical-dashboard/evidence-panels.tsx`, `src/components/clinical-dashboard/output-panel.tsx`|Grounded preformatted state is propagated to latest and prior answer surfaces and clinical detail rendering.|\\n\\n**Retrieval RPC telemetry**\\n\\n|Layer / File(s)|Summary|\\n|---|---|\\n|**Hybrid RPC error reporting**
`src/lib/rag.ts`, `tests/rag-offline-answer.test.ts`|Lexical, document, and table-fact RPC failures are recorded through search telemetry, while offline tests inject lexical RPC errors and verify ungrounded fail-closed output.|\\n\\n**Estimated code review effort:** 3 (Moderate) | ~25 minutes\\n\\n### Sequence Diagram(s)\\n\\n```mermaid\\nsequenceDiagram\\n participant ClinicalDashboard\\n participant sanitizeAnswerDisplayText\\n participant NaturalLanguageAnswer\\n ClinicalDashboard->>sanitizeAnswerDisplayText: sanitize grounded preformatted text\\n ClinicalDashboard->>NaturalLanguageAnswer: pass raw answer and preformatted state\\n NaturalLanguageAnswer->>sanitizeAnswerDisplayText: format with preformatted and preserveBold options\\n```\\n\\n

\\n\\n\\n\\n\\n---\\n\\n\\n> [!CAUTION]\\n> ## Pre-merge checks failed\\n> \\n> Please resolve all errors before merging. Addressing warnings is optional.\\n> \\n> - [ ] Ignore\\n\\n\\n### ❌ Failed checks (1 error, 1 warning)\\n\\n| Check name | Status | Explanation | Resolution |\\n| :-----------------: | :--------- | :---------------------------------------------------------------------------------------------------------------------------------- | :-------------------------------------------------------------------------------------------------------------------------------- |\\n| Verification Claims | ❌ Error | PR notes say \\\"Offline gates green\\\" and list passed checks (typecheck, lint, vitest, Playwright) without exact command/result pairs. | Rewrite each verification claim as \\\"Ran : passed\\\" or \\\"Not run: \\\" for every test/build/audit/browser check. |\\n| Docstring Coverage | ⚠️ Warning | Docstring coverage is 54.84% which is insufficient. The required threshold is 70.00%. | Write docstrings for the functions missing them to satisfy the coverage threshold. |\\n\\n

\\n

✅ Passed checks (9 passed)

\\n\\n\\n\\n\\n

\\n

✨ Finishing Touches

\\n\\n

\\n

📝 Generate docstrings

\\n\\n- [ ] Create stacked PR\\n- [ ] Commit on current branch\\n\\n

\\n

🧪 Generate unit tests (beta)

\\n\\n- [ ] Create PR with unit tests\\n- [ ] Commit unit tests in branch `claude/rag-review-improvements-f1bf84`\\n\\n

\\n

✨ Simplify code

\\n\\n- [ ] Create PR with simplified code\\n- [ ] Commit simplified code in branch `claude/rag-review-improvements-f1bf84`\\n\\n

\\n\\n

\\n\\n\\n\\n\\n---\\n\\n\\n\\n\\n_{Comment `@coderabbitai help` to get the list of available commands.}\\n\\n\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"**_{_{![P1 Badge](https://img.shields.io/badge/P1-orange?style=flat)}} Match full safety terms before truncating caveats**\\n\\nWhen a safety caveat appears after the first three fragments and uses normal wording such as “Escalate for senior review” or “Contraindicated in pregnancy”, this regex does not match it: the alternatives `escalat` and `contraindicat` are followed by the final `\\\\b`, so they only match the truncated stem, not `escalate`, `escalation`, `contraindicated`, or `contraindication`. In that scenario `safetyTail` stays empty and the compact answer cap can still hide the exact escalation/contraindication caveat this change is meant to preserve; use complete word forms or a prefix-safe pattern for these stems.\\n\\nUseful? React with 👍 / 👎.\",\"path\":\"src/components/clinical-dashboard/answer-content.tsx\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"**_{_{![P1 Badge](https://img.shields.io/badge/P1-orange?style=flat)}} Include RPC bodies before applying this migration**\\n\\nThis file lives under `supabase/migrations`, so as soon as `db push`/preview reset applies it, Supabase records version `20260712000000` as complete; because the migration only runs the truth-table guard and leaves the actual `create or replace function` bodies as an owner TODO here, fresh previews/DR rebuilds still get the stale fail-open/sentinel-blind retrieval RPCs that the header says this migration codifies, and appending to this same migration later will not run in environments that already recorded it. Please land the dumped RPC definitions in an applyable migration instead of an already-runnable placeholder.\\n\\nUseful? React with 👍 / 👎.\",\"path\":\"supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql\",\"side\":\"RIGHT\",\"line\":105}{\"type\":\"pull_request_comment\",\"body\":\"\\n### 💡 Codex Review\\n\\nHere are some automated review suggestions for this pull request.\\n\\n**Reviewed commit:** `e87c446854`\\n \\n\\n

ℹ️ About Codex in GitHub

\\n
\\n\\n[Your team has set up Codex to review pull requests in this repo](https://chatgpt.com/codex/cloud/settings/general). Reviews are triggered when you\\n- Open a pull request for review\\n- Mark a draft as ready\\n- Comment \\\"@codex review\\\".\\n\\nIf Codex has suggestions, it will comment; otherwise it will react with 👍.\\n\\n\\n\\n\\nCodex can also answer questions or update the PR. Try commenting \\\"@codex address that feedback\\\".\\n \\n

\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\\n\\n

\\n

🧩 Analysis chain

\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/bin/bash\\nset -euo pipefail\\n\\nprintf '\\\\n== display-text outline ==\\\\n'\\nast-grep outline src/components/clinical-dashboard/display-text.ts --view expanded || true\\n\\nprintf '\\\\n== relevant symbols/usages ==\\\\n'\\nrg -n \\\"normalizePreformattedDisplayText|polishClinicalAnswerProse|preserveBold|preformatted|PriorAnswerTurnSurface|display-text\\\" src/components/clinical-dashboard -S || true\\n\\nprintf '\\\\n== caller search across repo ==\\\\n'\\nrg -n \\\"PriorAnswerTurnSurface|preformatted: true|preserveBold:\\\" src -S || true\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 5961\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/bin/bash\\nset -euo pipefail\\nast-grep outline src/components/clinical-dashboard/display-text.ts --view expanded || true\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 1494\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/bin/bash\\nset -euo pipefail\\n\\nprintf '\\\\n== display-text outline ==\\\\n'\\nast-grep outline src/components/clinical-dashboard/display-text.ts --view expanded || true\\n\\nprintf '\\\\n== display-text relevant lines ==\\\\n'\\nsed -n '1,320p' src/components/clinical-dashboard/display-text.ts | cat -n | sed -n '1,320p'\\n\\nprintf '\\\\n== callers and tests ==\\\\n'\\nrg -n \\\"normalizePreformattedDisplayText|polishClinicalAnswerProse|preserveBold|preformatted|PriorAnswerTurnSurface\\\" src -S || true\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 19845\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/bin/bash\\nset -euo pipefail\\nsed -n '1,280p' src/components/clinical-dashboard/display-text.ts | cat -n | sed -n '180,260p'\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 4098\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/bin/bash\\nset -euo pipefail\\n\\nprintf '\\\\n== source-text-sanitizer preformatted normalizer ==\\\\n'\\nsed -n '280,340p' src/lib/source-text-sanitizer.ts | cat -n\\n\\nprintf '\\\\n== PriorAnswerTurnSurface ==\\\\n'\\nsed -n '500,585p' src/components/ClinicalDashboard.tsx | cat -n\\n\\nprintf '\\\\n== related primary answer path ==\\\\n'\\nsed -n '2840,2895p' src/components/ClinicalDashboard.tsx | cat -n\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 10940\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/bin/bash\\nset -euo pipefail\\n\\nprintf '\\\\n== NaturalLanguageAnswer ==\\\\n'\\nsed -n '585,760p' src/components/ClinicalDashboard.tsx | cat -n\\n\\nprintf '\\\\n== search tests for sanitizeAnswerDisplayText / bold / preformatted ==\\\\n'\\nrg -n \\\"sanitizeAnswerDisplayText|preformatted.*bold|\\\\\\\\*\\\\\\\\*|SafeBoldText|preserveBold\\\" src test tests __tests__ -S || true\\n\\nprintf '\\\\n== preformatted answer generation ==\\\\n'\\nsed -n '1120,1195p' src/lib/rag-extractive-answer.ts | cat -n\\nsed -n '1725,1765p' src/lib/rag-extractive-answer.ts | cat -n\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 50373\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/bin/bash\\nset -euo pipefail\\n\\nprintf '\\\\n== NaturalLanguageAnswer definition ==\\\\n'\\nrg -n \\\"function NaturalLanguageAnswer|const NaturalLanguageAnswer|export function NaturalLanguageAnswer\\\" src/components/ClinicalDashboard.tsx -n -A 120 -B 20\\n\\nprintf '\\\\n== SafeBoldText usage around ClinicalDashboard ==\\\\n'\\nrg -n \\\"SafeBoldText|parseSafeBoldText|

\\n\\n**Handle bold markers in the preformatted path.** `sanitizeAnswerDisplayText(..., { preformatted: true })` keeps `**...**` intact, and `PriorAnswerTurnSurface` renders that result in a plain `

`, so collapsed prior answers can show literal Markdown markers. Either strip/preserve bold explicitly in this branch or pass `preserveBold` through, and add a preformatted+bold regression test.\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@src/components/clinical-dashboard/display-text.ts` around lines 212 - 218,\\nUpdate the preformatted branch in sanitizeAnswerDisplayText so its handling of\\n**bold** markers matches options.preserveBold, preventing literal Markdown\\nmarkers when PriorAnswerTurnSurface renders collapsed text. Pass the\\npreserveBold setting through normalizePreformattedDisplayText or explicitly\\nstrip markers as appropriate, and add a regression test covering preformatted\\ntext with bold enabled.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\\n\\n✅ Confirmed as addressed by @BigSimmo\\n\\n\",\"path\":\"src/components/clinical-dashboard/display-text.ts\",\"side\":\"RIGHT\",\"line\":238}{\"type\":\"pull_request_comment\",\"body\":\"_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\\n\\n

\\n

🧩 Analysis chain

\\n\\n🏁 Script executed:\\n\\n```shell\\nrg -n -A8 -B8 'rhValueHeadPattern|posNegValueHeadPattern|standaloneBloodValueLinePattern' src/lib/source-text-sanitizer.ts\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 3042\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nsed -n '560,630p' src/lib/source-text-sanitizer.ts\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 4338\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nrg -n -A4 -B4 'bold|RhD|blood.*bullet|standaloneBloodValueLinePattern|bloodValueWithNounTailLinePattern' src/lib/source-text-sanitizer.ts test src\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 50374\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nrg -n -A4 -B4 'bold|RhD|blood.*bullet|standaloneBloodValueLinePattern|bloodValueWithNounTailLinePattern' src test\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 50374\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\npython3 - <<'PY'\\nimport re\\n\\nsubBullet = re.compile(r'(?<=^|[\\\\r\\\\n]|[^\\\\d\\\\s]\\\\s)o(?=\\\\s+(?:\\\\*\\\\*)?(?:\\\\d|[A-Z][a-z0-9]|[A-Z]{2,}))')\\nbloodLabelTail = re.compile(r'\\\\b(?:blood|abo|rh(?:d)?)\\\\s+(?:group|type):?\\\\s$', re.I)\\ngroupTypeLabelTail = re.compile(r'\\\\b(?:group|type):?\\\\s$', re.I)\\nqualifiedGroupTypeTail = re.compile(r'\\\\b[A-Za-z][\\\\w-]*\\\\s+(?:group|type):?\\\\s$', re.I)\\nrhValueHead = re.compile(r'^\\\\s+rh(?:d)?\\\\b', re.I)\\nposNegValueHead = re.compile(r'^\\\\s+(?:pos(?:itive)?|neg(?:ative)?)\\\\b', re.I)\\nstandaloneBloodValueLine = re.compile(r'^o\\\\s+(?:rh(?:d)?(?:\\\\s+(?:pos(?:itive)?|neg(?:ative)?))?|pos(?:itive)?|neg(?:ative)?)$', re.I)\\nbloodValueWithNounTailLine = re.compile(r'^o\\\\s+(?:rh(?:d)?\\\\s+)?(?:pos(?:itive)?|neg(?:ative)?)\\\\s+(?:blood(?!\\\\s+(?:cultures?|tests?|screens?|samples?|results?)\\\\b)|red\\\\s+cells?)\\\\b', re.I)\\n\\ncases = [\\n \\\"o RhD negative\\\",\\n \\\"o **RhD negative**\\\",\\n \\\"blood group o RhD negative\\\",\\n \\\"blood group o **RhD negative**\\\",\\n \\\"group: o RhD negative\\\",\\n \\\"group: o **RhD negative**\\\",\\n \\\"group: o Negative\\\",\\n \\\"group: o **Negative**\\\",\\n \\\"risk group: o Negative\\\",\\n \\\"risk group: o **Negative**\\\",\\n]\\n\\nfor s in cases:\\n print(\\\"CASE:\\\", s)\\n for m in subBullet.finditer(s):\\n offset = m.start()\\n before = s[:offset]\\n after = s[offset + len(m.group(0)):]\\n atItemStart = offset == 0 or s[offset-1] in \\\"\\\\r\\\\n\\\"\\n lineEnd = s.find(\\\"\\\\n\\\", offset)\\n lineTail = s[offset: len(s) if lineEnd == -1 else lineEnd].strip()\\n keep = False\\n reason = None\\n if bloodLabelTail.search(before):\\n keep = True; reason = \\\"bloodLabelTail\\\"\\n elif bloodValueWithNounTailLine.search(s[offset:]):\\n keep = True; reason = \\\"bloodValueWithNounTailLine\\\"\\n elif atItemStart and standaloneBloodValueLine.search(lineTail):\\n keep = True; reason = \\\"standaloneBloodValueLine\\\"\\n elif groupTypeLabelTail.search(before):\\n if rhValueHead.search(after):\\n keep = True; reason = \\\"groupType+rhValueHead\\\"\\n elif posNegValueHead.search(after) and not qualifiedGroupTypeTail.search(before):\\n keep = True; reason = \\\"groupType+posNegValueHead\\\"\\n print(\\\" match\\\", m.span(), \\\"after=\\\", repr(after), \\\"keep=\\\", keep, reason)\\n print()\\nPY\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 916\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\nrg -n -A4 -B4 'normalizeInlineBulletGlyphs|replaceSubBulletOGlyphs|bloodValueWithNounTailLinePattern|standaloneBloodValueLinePattern' src test\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 10491\\n\\n---\\n\\n\\n\\n

\\n\\n**Make the blood-value guards bold-aware.** \\n`o **RhD negative**` and `group/type: o **Negative**` still bypass the blood-value checks because the guard patterns read the `**` markers literally. Match or strip the bold markers in those guards, and add regressions for line-start and label-prefixed bold blood values.\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@src/lib/source-text-sanitizer.ts` around lines 568 - 571, Update the\\nblood-value guard patterns in source-text sanitization to recognize bold markers\\naround values, including line-start forms such as “o **RhD negative**” and\\nlabel-prefixed forms such as “group/type: o **Negative**”. Preserve existing\\nnon-bold matching and add regression coverage for both bold cases.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\\n\\n✅ Confirmed as addressed by @BigSimmo\\n\\n\",\"path\":\"src/lib/source-text-sanitizer.ts\",\"side\":\"RIGHT\",\"line\":590}{\"type\":\"pull_request_comment\",\"body\":\"_🔒 Security & Privacy_ | _🟠 Major_ | _🏗️ Heavy lift_\\n\\n**Append the retrieval RPC definitions before merging.**\\n\\nThis migration ends at the marker and contains no `CREATE OR REPLACE FUNCTION` statements. A fresh rebuild therefore retains the stale fail-open, sentinel-blind RPC bodies described in Lines 18-22, so the intended tenancy contract is not reproducible. Append the exact live definitions and verify the migration contains all eight functions before landing.\\n\\n\\n\\n\\n\\n\\n\\nAlso applies to: 107-107\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn\\n`@supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\\naround lines 51 - 55, Append the exact live CREATE OR REPLACE FUNCTION\\ndefinitions for all eight retrieval RPCs after the completion marker in the\\nmigration, preserving their current tenancy and sentinel-handling behavior.\\nVerify the migration contains all eight function definitions before merging.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\",\"path\":\"supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql\",\"side\":\"RIGHT\",\"line\":54}{\"type\":\"pull_request_comment\",\"body\":\"_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\\n\\n

\\n

🧩 Analysis chain

\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/usr/bin/env bash\\nset -euo pipefail\\npsql \\\"$SUPABASE_DB_URL\\\" -X -v ON_ERROR_STOP=1 -At <<'SQL'\\nselect string_agg(\\n pg_get_functiondef(p.oid) || E';\\\\n',\\n E'\\\\n' order by p.proname, p.oid\\n)\\nfrom pg_proc p\\njoin pg_namespace n on n.oid = p.pronamespace\\nwhere n.nspname = 'public'\\n and p.proname in (\\n 'match_document_chunks_hybrid',\\n 'match_document_chunks_text',\\n 'match_document_lookup_chunks_text',\\n 'match_document_table_facts_text',\\n 'match_document_embedding_fields_hybrid',\\n 'match_document_index_units_hybrid',\\n 'match_documents_for_query',\\n 'match_document_chunks'\\n );\\nSQL\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 203\\n\\n---\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/usr/bin/env bash\\nset -euo pipefail\\n\\nfile='supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql'\\nwc -l \\\"$file\\\"\\nsed -n '45,75p' \\\"$file\\\" | cat -n\\n```\\n\\nRepository: BigSimmo/Database\\n\\nLength of output: 2326\\n\\n---\\n\\n🌐 Web query:\\n\\n`PostgreSQL SELECT aggregate ORDER BY non-grouped column without GROUP BY behavior`\\n\\n💡 Result:\\n\\nIn PostgreSQL, you cannot use an aggregate function alongside non-grouped columns in a SELECT statement or ORDER BY clause without a GROUP BY clause, unless the non-grouped columns are functionally dependent on the grouped columns (such as being a primary key) [1][2][3]. When an aggregate function is present, PostgreSQL requires that all non-aggregate columns in the SELECT list, ORDER BY, and HAVING clauses must either be included in the GROUP BY clause or be wrapped in an aggregate function [1][3]. If you attempt to use an aggregate function without a GROUP BY clause while referencing ungrouped columns, PostgreSQL will raise error 42803: \\\"column must appear in the GROUP BY clause or be used in an aggregate function\\\" [2][3]. To achieve results without the standard grouping behavior, consider the following alternatives: 1. Window Functions: If you need to perform calculations across a set of rows without collapsing them into a single output row per group, use window functions (e.g., SUM(value) OVER (PARTITION BY category)) [4][5]. Window functions allow you to retain the original row identities while performing aggregations [5]. Note that window functions are evaluated after the GROUP BY and aggregate phases of query processing [5]. 2. Subqueries or CTEs: If you need to aggregate data and then join it back to the original rows for sorting or further selection, you can use a subquery or a Common Table Expression (CTE) to calculate the aggregates, and then join this result set back to the base table [6][7]. 3. Aggregate Ordering: If you specifically need an aggregate function to process input values in a specific order (e.g., for string concatenation or specific statistical aggregates), you can use the WITHIN GROUP (ORDER BY...) syntax [8][9]. For example, to order by a column that is not part of the GROUP BY clause while aggregating, you might first perform the aggregation in a subquery and then perform the ordering in an outer SELECT query [6][7].\\n\\nCitations:\\n\\n- 1: https://www.postgresql.org/docs/18/sql-select.html\\n- 2: https://www.bytebase.com/reference/postgres/error/42803-column-must-appear-in-group-by-clause/\\n- 3: https://pulse.support/kb/postgresql-grouping-error-42803\\n- 4: https://www.postgresql.org/docs/18/functions-window.html\\n- 5: https://www.postgresql.org/docs/devel/tutorial-window.html\\n- 6: https://stackoverflow.com/questions/7870148/is-it-possible-to-have-an-sql-query-that-uses-agg-functions-in-this-way\\n- 7: https://stackoverflow.com/questions/71946758/postgresql-column-must-appear-in-the-group-by-clause-or-be-used-in-an-aggregate\\n- 8: https://www.postgresql.org/docs/19/functions-aggregate.html\\n- 9: https://www.postgresql.org/docs/18/functions-aggregate.html\\n\\n---\\n\\n\\n\\n

\\n\\n**Move the ordering into `string_agg`.** The outer `ORDER BY p.proname` makes this aggregate-only query invalid in PostgreSQL; put the ordering inside `string_agg(... ORDER BY p.proname, p.oid)` and drop the trailing `ORDER BY`.\\n\\n

\\n

🤖 Prompt for AI Agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn\\n`@supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\\naround lines 56 - 65, Update the commented psql query that builds rpc_bodies.sql\\nso string_agg orders its inputs by p.proname and p.oid, and remove the trailing\\nouter ORDER BY p.proname. Keep the existing function filtering and aggregation\\nbehavior unchanged.\\n```\\n\\n

\\n\\n\\n\\n\\n\\n\\n\\n\",\"path\":\"supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql\",\"side\":\"RIGHT\",\"line\":63}{\"type\":\"pull_request_comment\",\"body\":\"**Actionable comments posted: 4**\\n\\n> [!CAUTION]\\n> Some comments are outside the diff and can’t be posted inline due to platform limitations.\\n> \\n> \\n> \\n>

\\n>

⚠️ Outside diff range comments (1)

\\n> \\n>
\\n>
src/components/clinical-dashboard/answer-content.tsx (1)
\\n> \\n> `231-292`: _🎯 Functional Correctness_ | _🟠 Major_ | _⚡ Quick win_\\n> \\n> **Head fragments can still lose safety cues** `primaryAnswerDisplayText` only rescues `safetyTail`; if a safety cue appears in one of the first 3 fragments after word 85, truncation still drops it. Add a regression test in `tests/rag-answer-text.test.ts` for a long head fragment containing `withhold`/`do not`, and preserve safety-bearing head content when applying the cap.\\n> \\n>
\\n>
🤖 Prompt for AI Agents
\\n> \\n> ```\\n> Verify each finding against current code. Fix only still-valid issues, skip the\\n> rest with a brief reason, keep changes minimal, and validate.\\n> \\n> In `@src/components/clinical-dashboard/answer-content.tsx` around lines 231 - 292,\\n> The 85-word truncation in primaryAnswerDisplayText can remove safety signals\\n> from the first three fragments. Update the head-cap logic to preserve\\n> safety-bearing head content, including fragments matching\\n> primaryAnswerSafetySignalPattern, while retaining the existing compact behavior\\n> for non-safety text; add a regression case in rag-answer-text.test.ts covering a\\n> long head fragment containing “withhold” or “do not”.\\n> ```\\n> \\n>
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🧹 Nitpick comments (1)

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tests/rag-offline-answer.test.ts (1)
\\n\\n`165-185`: _📐 Maintainability & Code Quality_ | _🔵 Trivial_ | _⚡ Quick win_\\n\\n**Assert the new telemetry contract directly.**\\n\\nThis test verifies fail-closed behavior, but it would still pass if `recordHybridRpcError` stopped recording `match_document_chunks_text`. Add an assertion at the telemetry or structured-logging boundary for RPC `match_document_chunks_text` and code `42P01`.\\n\\n
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🤖 Prompt for AI Agents
\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nIn `@tests/rag-offline-answer.test.ts` around lines 165 - 185, Extend the test\\naround answerOffline to assert the telemetry or structured-logging boundary\\nrecords an RPC error for match_document_chunks_text with code 42P01. Keep the\\nexisting fail-closed assertions unchanged, and use the test’s existing telemetry\\ncapture or spy mechanism rather than only checking the returned answer.\\n```\\n\\n
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🤖 Prompt for all review comments with AI agents

\\n\\n```\\nVerify each finding against current code. Fix only still-valid issues, skip the\\nrest with a brief reason, keep changes minimal, and validate.\\n\\nInline comments:\\nIn `@src/components/clinical-dashboard/display-text.ts`:\\n- Around line 212-218: Update the preformatted branch in\\nsanitizeAnswerDisplayText so its handling of **bold** markers matches\\noptions.preserveBold, preventing literal Markdown markers when\\nPriorAnswerTurnSurface renders collapsed text. Pass the preserveBold setting\\nthrough normalizePreformattedDisplayText or explicitly strip markers as\\nappropriate, and add a regression test covering preformatted text with bold\\nenabled.\\n\\nIn `@src/lib/source-text-sanitizer.ts`:\\n- Around line 568-571: Update the blood-value guard patterns in source-text\\nsanitization to recognize bold markers around values, including line-start forms\\nsuch as “o **RhD negative**” and label-prefixed forms such as “group/type: o\\n**Negative**”. Preserve existing non-bold matching and add regression coverage\\nfor both bold cases.\\n\\nIn\\n`@supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`:\\n- Around line 51-55: Append the exact live CREATE OR REPLACE FUNCTION\\ndefinitions for all eight retrieval RPCs after the completion marker in the\\nmigration, preserving their current tenancy and sentinel-handling behavior.\\nVerify the migration contains all eight function definitions before merging.\\n- Around line 56-65: Update the commented psql query that builds rpc_bodies.sql\\nso string_agg orders its inputs by p.proname and p.oid, and remove the trailing\\nouter ORDER BY p.proname. Keep the existing function filtering and aggregation\\nbehavior unchanged.\\n\\n---\\n\\nOutside diff comments:\\nIn `@src/components/clinical-dashboard/answer-content.tsx`:\\n- Around line 231-292: The 85-word truncation in primaryAnswerDisplayText can\\nremove safety signals from the first three fragments. Update the head-cap logic\\nto preserve safety-bearing head content, including fragments matching\\nprimaryAnswerSafetySignalPattern, while retaining the existing compact behavior\\nfor non-safety text; add a regression case in rag-answer-text.test.ts covering a\\nlong head fragment containing “withhold” or “do not”.\\n\\n---\\n\\nNitpick comments:\\nIn `@tests/rag-offline-answer.test.ts`:\\n- Around line 165-185: Extend the test around answerOffline to assert the\\ntelemetry or structured-logging boundary records an RPC error for\\nmatch_document_chunks_text with code 42P01. Keep the existing fail-closed\\nassertions unchanged, and use the test’s existing telemetry capture or spy\\nmechanism rather than only checking the returned answer.\\n```\\n\\n

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🪄 Autofix (Beta)

\\n\\n✅ Autofix completed\\n\\n

\\n\\n---\\n\\n

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ℹ️ Review info

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⚙️ Run configuration

\\n\\n**Configuration used**: Organization UI\\n\\n**Review profile**: CHILL\\n\\n**Plan**: Pro Plus\\n\\n**Run ID**: `7474c87f-ee2b-4c19-bea5-60ac243a0764`\\n\\n

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📥 Commits

\\n\\nReviewing files that changed from the base of the PR and between 9da527c555a817f248cc73a5a4ac8afe36b82dc3 and e87c446854c5089f16ef0fbda9d69eea59f8bf91.\\n\\n

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📒 Files selected for processing (16)

\\n\\n* `src/components/ClinicalDashboard.tsx`\\n* `src/components/clinical-dashboard/answer-content.tsx`\\n* `src/components/clinical-dashboard/answer-result-surface.tsx`\\n* `src/components/clinical-dashboard/display-text.ts`\\n* `src/components/clinical-dashboard/evidence-panels.tsx`\\n* `src/components/clinical-dashboard/output-panel.tsx`\\n* `src/lib/answer-render-policy.ts`\\n* `src/lib/rag-answer-text.ts`\\n* `src/lib/rag.ts`\\n* `src/lib/source-text-sanitizer.ts`\\n* `supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\\n* `tests/answer-render-policy.test.ts`\\n* `tests/display-text.test.ts`\\n* `tests/rag-answer-text.test.ts`\\n* `tests/rag-offline-answer.test.ts`\\n* `tests/source-text-sanitizer.test.ts`\\n\\n

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\\n\\n\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"\\n> [!NOTE]\\n> Autofix is a beta feature. Expect some limitations and changes as we gather feedback and continue to improve it.\\n\\n## Fixes Applied Successfully\\n\\nFixed 5 file(s) based on 4 unresolved review comments.\\n\\n\\n\\n**Files modified:**\\n- `src/components/clinical-dashboard/display-text.ts`\\n- `src/lib/source-text-sanitizer.ts`\\n- `supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\\n- `tests/display-text.test.ts`\\n- `tests/source-text-sanitizer.test.ts`\\n\\n**Commit:** `d5ab4c38533d94613e527d7ef7cf388c00c14cd0`\\n\\nThe changes have been pushed to the `claude/rag-review-improvements-f1bf84` branch.\\n\\n**Time taken:** `6m 49s`\\n\",\"path\":null,\"side\":null,\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"@Codex please fix this issue.\",\"path\":\"supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql\",\"side\":\"RIGHT\",\"line\":105}{\"type\":\"pull_request_comment\",\"body\":\"@Codex please fix this issue.\",\"path\":\"src/components/clinical-dashboard/answer-content.tsx\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"### Summary\\n* Replaced the placeholder/TODO migration section with an applyable codification note explaining that the migration now installs the eight primary retrieval RPC definitions and routes ownership through `retrieval_owner_matches(owner_filter, d.owner_id)`. [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL38-L44](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L38-L44)\\n* Preserved the fail-closed/public-sentinel truth-table guard for `retrieval_owner_matches` before the RPC definitions are applied. [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL48-L77](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L48-L77)\\n* Added applyable `CREATE OR REPLACE FUNCTION` definitions for the primary retrieval RPCs, including `match_document_chunks_hybrid`, `match_document_chunks_text`, `match_document_table_facts_text`, and `match_document_chunks`, so this migration no longer records successfully as a body-less placeholder. [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL79-L82](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L79-L82) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL287-L293](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L287-L293) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL436-L442](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L436-L442) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL791-L798](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L791-L798)\\n\\n### Git / PR\\n* Committed changes on the current branch with commit `9fda499` (`fix(db): codify retrieval RPC owner gates`).\\n* Created a PR via the `make_pr` tool with title: `fix(db): codify retrieval RPC owner gates`.\\n\\n**Testing**\\n* ✅ `git diff --check`\\n* ✅ `python3 - <<'PY' ... PY` — focused static validation confirmed exactly one definition for each of the eight primary retrieval RPCs, no fail-open `(owner_filter is null or .owner_id = owner_filter)` predicates in the appended RPC bodies, and each function body references `retrieval_owner_matches(owner_filter, ...)`.\\n* ⚠️ `npm run check:retrieval-owner-migration` — could not run in this environment because local dependencies are absent (`tsx` not found) and the shell resolved Node `v20.20.2` instead of the repo-required Node 24.\\n\\n [View task →](https://chatgpt.com/s/cd_6a53b9b5185081919e366ebfbc367242)\",\"path\":\"supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql\",\"side\":\"RIGHT\",\"line\":105}{\"type\":\"pull_request_comment\",\"body\":\"**Summary**\\n* Updated the compact primary-answer safety matcher to recognize full safety terms such as `Escalate`, `escalation`, `Contraindicated`, and `contraindication`, preventing those caveats from being dropped during display compaction. [src/components/clinical-dashboard/answer-content.tsxL231-L235](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/src/components/clinical-dashboard/answer-content.tsx#L231-L235)\\n* Exported `primaryAnswerDisplayText` so the compact-answer behavior can be covered directly in a focused regression test. [src/components/clinical-dashboard/answer-content.tsxL251-L256](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/src/components/clinical-dashboard/answer-content.tsx#L251-L256)\\n* Added regression coverage confirming normal-worded escalation and contraindication caveats beyond the compact answer head remain visible. [tests/rag-answer-text.test.tsL27-L42](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/tests/rag-answer-text.test.ts#L27-L42)\\n\\n**Commit / PR**\\n* Committed changes on the current branch with commit `36ed171` (`fix(rag): preserve full safety caveat terms`).\\n* Created a PR record titled `fix(rag): preserve full safety caveat terms`.\\n\\n**Testing**\\n* ✅ `npm run test -- tests/rag-answer-text.test.ts --reporter=dot`\\n* ✅ `npm run typecheck`\\n* ✅ `npx eslint src/components/clinical-dashboard/answer-content.tsx tests/rag-answer-text.test.ts`\\n\\n [View task →](https://chatgpt.com/s/cd_6a53b9ba85b88191ab1fdcf508cb790f)\",\"path\":\"src/components/clinical-dashboard/answer-content.tsx\",\"side\":\"RIGHT\",\"line\":null}{\"type\":\"pull_request_comment\",\"body\":\"> [!NOTE]\\n> Docstrings generation - SKIPPED\\n> Skipped regeneration as there are no new commits. Docstrings already generated for this pull request at https://github.com/BigSimmo/Database/pull/521.\\n\\n\\n\\n\",\"path\":\"src/lib/source-text-sanitizer.ts\",\"side\":\"RIGHT\",\"line\":590}{\"type\":\"pull_request_comment\",\"body\":\"Removed this migration. Live is already fail-closed on all 8 primary RPCs (verified); a byte-perfect codification is owner-driven (needs the DB dump), and a body-less stub would record as applied and block the real fix.\\n\\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_\",\"path\":\"supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql\",\"side\":\"RIGHT\",\"line\":54}{\"type\":\"pull_request_comment\",\"body\":\"Moot — the migration was removed from this PR. (The dump command lives in the F7 follow-up notes, where the `string_agg(... ORDER BY ...)` form is used.)\\n\\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_\",\"path\":\"supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql\",\"side\":\"RIGHT\",\"line\":63}{\"type\":\"pull_request_comment\",\"body\":\"`@BigSimmo` Thanks for the context — that's a sound resolution. Since live is already verified fail-closed on all eight primary RPCs, an incomplete migration stub would indeed just create a false \\\"applied\\\" state without capturing the exact bodies, effectively blocking a future accurate fix. Removing it until the byte-perfect codification can be done via a real DB connection is the right call.\\n\\nI'll drop this comment.\\n\\n\\n\\n\",\"path\":\"supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql\",\"side\":\"RIGHT\",\"line\":54}{\"type\":\"pull_request_comment\",\"body\":\"

\\n

🧩 Analysis chain

\\n\\n🏁 Script executed:\\n\\n```shell\\n#!/bin/bash\\nset -euo pipefail\\nrg -n \\\"normalizePreformattedDisplayText\\\" -A 20 src/lib/source-text-sanitizer.ts | head -60\\nrg -n \\\"preformatted.*bold|preserveBold\\\" tests/display-text.test.ts -A 15 -B 5\\n```\\n\\nLength of output: 6659\\n\\n---\\n\\n

\\n\\nConfirmed — the fix is in place: `normalizePreformattedDisplayText` now takes `{ preserveBold }` and strips `**` when it's falsy, `sanitizeAnswerDisplayText` forwards `options.preserveBold` on the preformatted branch, and the new regression test in tests/display-text.test.ts (\\\"handles bold markers correctly in preformatted answers\\\") covers exactly the collapsed prior-answer scenario I flagged. Thanks for the quick turnaround, `@BigSimmo`!\\n\\n(=^..^=)\\n\\n\\n\\n---\\n\\n

\\n

🧬 Code Graph Analysis Results

\\n\\n### `src/components/clinical-dashboard/display-text.ts`\\n\\n**Lines 16-26**\\n```ts\\nexport type DisplayTextSanitizeOptions = {\\n minLength?: number;\\n minTokens?: number;\\n compactSource?: boolean;\\n // Server-`preformatted` answers (doc-support lists, table/visual references)\\n // are display-ready by construction; run only lossless normalization so their\\n // document names / facility codes are not deleted as \\\"source noise\\\".\\n preformatted?: boolean;\\n // Keep server high-yield bold (**…**) so can render it.\\n preserveBold?: boolean;\\n};\\n```\\n\\n**Lines 229-252**\\n```ts\\nexport function sanitizeAnswerDisplayText(value: string, options: DisplayTextSanitizeOptions = {}) {\\n const normalized = (\\n options.preformatted\\n ? normalizePreformattedDisplayText(value, {\\n preserveBold: options.preserveBold,\\n })\\n : polishClinicalAnswerProse(sourceTextForClinicalProsePreservingBreaks(value), {\\n preserveBold: options.preserveBold,\\n })\\n ).trim();\\n if (!normalized) return \\\"\\\";\\n const artifactStart = normalizeDisplayText(normalized).search(\\n /\\\\{\\\\s*\\\"(?:answer|heading|body|grounded|confidence|citations?|answerSections?|citation_chunk_ids|source_chunk_ids|chunk_id|conflictsOrGaps|quoteCards?)\\\\s*:/i,\\n );\\n const trimmed =\\n artifactStart === -1 ? normalized : artifactStart === 0 ? \\\"\\\" : normalized.slice(0, artifactStart).trim();\\n if (!trimmed) return \\\"\\\";\\n const { minLength = 2, minTokens = 1 } = options;\\n if (trimmed.length < minLength) return \\\"\\\";\\n const tokenCount = normalizeDisplayText(trimmed).split(/\\\\s+/).filter(Boolean).length;\\n if (tokenCount < minTokens) return \\\"\\\";\\n if (!/[A-Za-z]{2,}/.test(trimmed)) return \\\"\\\";\\n return looksLikeDisplayArtifact(trimmed) ? \\\"\\\" : trimmed;\\n}\\n```\\n\\n**Lines 281-288**\\n```ts\\nexport function comparableAnswerText(value: string) {\\n return value\\n .replace(/\\\\*\\\\*/g, \\\"\\\")\\n .replace(/\\\\.\\\\.\\\\.$/, \\\"\\\")\\n .toLowerCase()\\n .replace(/[^a-z0-9]+/g, \\\" \\\")\\n .trim();\\n}\\n```\\n\\n---\\n\\n### `src/lib/source-text-sanitizer.ts`\\n\\n**Lines 314-317**\\n```ts\\nexport function normalizePreformattedDisplayText(text: string, options: { preserveBold?: boolean } = {}) {\\n const normalized = readableWhitespace(text);\\n return options.preserveBold ? normalized : normalized.replace(/\\\\*\\\\*([^*]+)\\\\*\\\\*/g, \\\"$1\\\");\\n}\\n```\\n\\n---\\n\\n### `src/lib/rag-answer-text.ts`\\n\\n**Lines 220-252 (relevant preserveBold behavior summarized)**\\n```ts\\n/**\\n * polishClinicalAnswerProse(value, options)\\n * - Params:\\n * - value: string\\n * - options: { preserveBold?: boolean }\\n * - Bold handling:\\n * - If options.preserveBold is true: keeps `**...**` during normalization.\\n * - Otherwise: strips markdown bold markers via `normalized.replace(/\\\\*\\\\*([^*]+)\\\\*\\\\*/g, \\\"$1\\\")`.\\n * - Returns: string (cleaned/normalized clinical prose for display).\\n * - Error handling: none (pure string transformations).\\n */\\n```\\n\\n

\\n\\n\\n\\n\",\"path\":\"src/components/clinical-dashboard/display-text.ts\",\"side\":\"RIGHT\",\"line\":238}{\"type\":\"pull_request_comment\",\"body\":\"`@BigSimmo` Understood — thanks for the clarification. Since the migration file was removed from this PR, the ordering issue no longer applies here. Good to know the corrected `string_agg(... ORDER BY ...)` form is captured in the F7 follow-up notes for whenever that migration gets reintroduced.\\n\\n\\n\\n\",\"path\":\"supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql\",\"side\":\"RIGHT\",\"line\":63}","text_elements",[],{"_621":963,"_602":603,"_623":609},{"_624":964,"_626":-5,"_42":-5,"_627":-5,"_628":-5,"_96":512,"_92":630},[965],{"_46":959,"_92":966},"input_text",{"_621":968,"_602":603,"_623":609},{"_624":969,"_626":-5,"_42":-5,"_627":-5,"_628":-5,"_96":512,"_92":630},[970,971],{"_46":973,"_92":966},{"_46":972,"_92":966},"\n /workspace/Database\n bash\n 2026-07-12\n Etc/UTC\n","# AGENTS.md instructions for /workspace/Database\n\n\n\n\n# This is NOT the Next.js you know\n\nThis version has breaking changes — APIs, conventions, and file structure may all differ from your training data. Read the relevant guide in `node_modules/next/dist/docs/` before writing any code. Heed deprecation notices.\n\n\n\n\n\n## Dependency shortcut\n\nWhen the user types exactly `dependency` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for safe dependency maintenance. This is a Codex chat shortcut, not an app feature, script, automation, or CI workflow.\n\nGoal:\nUpdate direct project dependencies to the newest stable compatible versions, regenerate the existing lockfile, identify source/config/test code that relies on old dependency behavior, make the smallest safe compatibility changes, and verify the result. Do not rewrite the project, switch package managers, discard user work, commit, push, deploy, or run destructive cleanup without explicit confirmation.\n\nStart with read-only inspection:\n\n- Check branch, upstream, worktrees, recent relevant history, and `git status`.\n- If on `main`, `master`, `develop`, `release/*`, or another protected/base branch, create/switch to `codex/dependency-maintenance` before editing, if safe.\n- Inspect manifests, lockfiles, package-manager config, runtime/toolchain files, workspace layout, CI config, scripts, and documented checks.\n- Detect repo-local install/dev/test/build/watch/server processes that could race dependency updates.\n- Preserve all existing staged, unstaged, and untracked user work.\n\nPackage-manager rules:\n\n- Use the package manager already used by the repo: npm, pnpm, yarn, bun, pip, poetry, uv, cargo, go, bundler, gradle, maven, dotnet, or equivalent.\n- Do not switch package managers or create a new lockfile type.\n- Respect engines, runtime versions, lockfiles, workspaces, wrappers, and repo conventions.\n- In monorepos or polyglot repos, update each ecosystem through its native workspace-aware workflow.\n\nDependency update rules:\n\n- Identify outdated direct production and development dependencies.\n- Compare both manifest ranges and locked/installed versions against latest stable compatible releases.\n- Treat “outdated packages found” exit codes as normal where applicable.\n- Avoid prerelease, alpha, beta, canary, rc, next, nightly, and experimental versions unless the stable channel points there and explain why.\n- Do not use force or legacy flags that bypass peer, engine, resolver, or lockfile integrity checks unless explicitly approved.\n- Do not run forced audit fixes or broad destructive codemods.\n- If latest is incompatible, use the newest compatible version and document why.\n- Group risky updates coherently, such as framework plus plugins, test runner plus coverage, lint core plus plugins, or runtime plus adapter packages.\n\nCompatibility audit:\n\n- For every major update and every core framework/runtime/build/test/lint/UI/database update, inspect release notes, migration guides, peer ranges, engines, and changelogs when available.\n- Search source, tests, scripts, config, and CI for imports, APIs, CLI flags, config keys, environment variables, plugin names, generated types, or file paths tied to changed dependencies.\n- If old dependency behavior is used, make the smallest safe migration that preserves behavior.\n- If migration is large, risky, architectural, or product-affecting, stop after discovery and provide a concrete fix plan with affected files, package versions, sequence, and verification commands.\n- Add or adjust focused tests only when needed to prove migrated behavior.\n\nGenerated and sensitive files:\n\n- Do not intentionally keep dependency directories, build outputs, caches, logs, local state, test artifacts, browser artifacts, `.env*`, secrets, keys, tokens, credentials, or machine-local config.\n- Manifest and existing lockfile changes are allowed.\n\nVerification:\n\n- Run a cheap baseline first when useful to distinguish pre-existing failures.\n- After updates, run install/dependency validation, then relevant lint, type check, tests, build, smoke/UI/a11y, codegen, integration checks, or equivalent.\n- For frontend/browser-facing changes, run browser/UI verification when framework, bundler, router, styling, test runner, or browser automation changed.\n- If a check fails, fix dependency-related breakage and rerun the smallest failing check before broader checks.\n- Run non-mutating audit/vulnerability checks when available.\n- Confirm no repo-owned dev server, watcher, or temporary process was left running unless requested.\n\nFinal response for `dependency` must include:\n\n- Branch and worktree state.\n- Package manager, runtime, manifests, and lockfiles detected.\n- Outdated dependencies found.\n- Dependencies updated, old version -> new version.\n- Dependencies not updated and why.\n- Files changed.\n- Compatibility migrations and old APIs found/fixed.\n- Checks run and results.\n- Checks not run and why.\n- Audit/vulnerability summary.\n- Generated/untracked files left behind.\n- Branch movement, external repo changes, or process cleanup observed.\n- Risks or follow-up work.\n- Confirmation that no commit or push was made unless explicitly requested.\n\nAfter setup:\n\n- Verify root `AGENTS.md` contains exactly one `## Dependency shortcut` section.\n- Show the final diff for `AGENTS.md`.\n- Summarize what changed.\n- Confirm no dependency update, install, test, build, audit, commit, or push was performed.\n\n\n\n\n\n## Bug-hunter shortcut\n\nWhen the user types exactly `bug-hunter` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for targeted defect discovery.\n\nExecution rules:\n\n- Invoke the `bug-hunter` skill first.\n- Prioritize reproducible defects over code style, naming, or formatting feedback.\n- Trace realistic failure paths: invalid input, empty states, retries, race/concurrency issues, stale state/cache, network/auth failures, permissions, and boundary values.\n- For each finding, include trigger, expected behavior, actual risk, and the smallest proof (or targeted test/check) that would catch it.\n- If no high-confidence defect is found, explicitly state that and list the most likely residual risk area.\n\nScope and safety:\n\n- Keep the hunt scoped to code touched by the user request unless the defect clearly crosses module boundaries.\n- Do not make broad refactors while hunting; propose minimal fixes for confirmed issues.\n- Run the smallest focused verification for each confirmed defect, then expand only if needed.\n\n\n\n\n\n## Codex review throttling and routing\n\nDo not review branches opportunistically. Review the current changed diff, PR, or branch only when the user explicitly asks for review/audit/hunter/cleanup/upload work, when CI/check failures are the task, or when the current change touches high-risk areas that require a targeted review before handoff.\n\nUse `docs/codex-review-protocol.md` as the shared review protocol for every repo-local review skill, branch/PR review, audit, bug hunt, release-readiness check, and PR/CI review.\n\nBefore reviewing a branch or PR:\n\n- Check `docs/branch-review-ledger.md` if it exists.\n- Resolve the target with `git rev-parse `.\n- If the same branch/ref and HEAD SHA were already reviewed for the same scope, summarize the prior ledger outcome and skip the repeat review unless the user explicitly requests a fresh pass.\n- If the target HEAD changed, review only the changed scope and update the ledger after the review.\n\nBefore reviewing multiple branches:\n\n- Build a short branch inventory first: branch, upstream, ahead/behind, last commit, and merged status.\n- Skip branches already merged into `main`.\n- Skip unchanged branches already recorded in `docs/branch-review-ledger.md`.\n- Do not re-review every branch after ordinary coding tasks.\n- If a repeated request targets unchanged reviewed branches, summarize the prior result and ask before doing another full pass.\n\nReview routing:\n\n- `diff-review`: Use for explicit review of the current diff, PR, or named branch. Findings first, ordered by severity, with file/line evidence.\n- `bug-hunter`: Use only for the exact `bug-hunter` shortcut or an explicit defect-hunt request. Prioritize reproducible bugs and smallest proof.\n- `repo-auditor`: Use for explicit repo-wide audit/refactor/dead-code/import/dependency-structure requests. Treat outputs as triage, not automatic delete lists.\n- `release-readiness`: Use for explicit release, merge, PR readiness, or handoff confidence requests. Do not run provider-backed gates without confirmation.\n- `branch-cleanup`: Use only when the prompt explicitly asks for branch cleanup/hygiene or branch deletion candidates. Apply `docs/branch-cleanup-guide.md` and the review ledger before inspecting branch diffs.\n- `pr-ci-fix`: Confirmation-required for this repo. GitHub/GitLab API calls, PR comments, CI reruns, commits, and pushes require explicit user approval and must respect the upload/handoff rules.\n\nWhen a branch or PR review completes, record the reviewed branch/ref, HEAD SHA, date, scope, outcome, and checks in `docs/branch-review-ledger.md`.\n\n\n\n\n\n# Local server safety\n\n- If the user says `run`, execute `npm run ensure` and return the printed URL.\n- If the user asks for UI/frontend changes, browser QA, screenshots, mobile checks, or a local app link, run `npm run ensure` before opening or testing the app, even if the user did not say `run`.\n- Never assume `localhost:3000`, `localhost:3001`, or `localhost:3002`.\n- Never attach to a local server unless `/api/local-project-id` confirms it is this project.\n- Do not kill or modify other projects' local servers. If the stable project port is busy, let `npm run ensure` choose the next safe project URL.\n- Do not run a permanent watcher. Only start or verify the server when the current chat task needs the app or the user asks to run it.\n\n\n\n\n\n# Process hardening phases\n\n- For non-trivial source/config/test changes, prefer `npm run verify:cheap` as the first broad gate and `npm run verify:pr-local` before PR handoff when the change is ready. The PR-local gate runs format plus `verify:cheap`, then conditionally adds the production build/client-bundle scan and code-backed offline RAG tests. Browser, dependency-audit, Docker/Supabase replay, and provider-backed checks remain separate gates. Use `npm run verify:pr-local -- --dry-run --files ` to inspect selection without running commands. The broader `--extended` plan is dry-run only unless explicit approval is reflected by `ALLOW_EXTENDED_PR_LOCAL=true`.\n- For UI, frontend, browser, routing, styling, reduced-motion, or forced-colors changes, run `npm run ensure` before browser work and use `npm run verify:ui` as the Chromium UI gate.\n- For release or handoff confidence, use `npm run verify:release`; this includes the full Playwright project set.\n- For clinical ingestion, answer generation, source governance, privacy, production-readiness, or environment changes, run the smallest relevant domain check plus `npm run check:production-readiness`.\n- For pull requests that touch ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output, complete the clinical governance preflight in `.github/pull_request_template.md`.\n- Track known verification debts and staged process improvements in `docs/process-hardening.md` instead of relying on chat-only memory.\n\n\n\n\n\n# Supabase project safety\n\n- This repo targets the live Supabase project `Clinical KB Database`.\n- Expected project ref: `sjrfecxgysukkwxsowpy`.\n- Older unused project ref `qjgitjyhxrwxsrydablr` belongs to `Database`; treat it as stale and do not use it.\n- Run `npm run check:supabase-project` after changing Supabase env values.\n\n\n\n\n\n# API and provider confirmation boundary\n\n- Never run, modify, test, or otherwise interact with OpenAI, Supabase, GitHub/GitLab, hosted CI, production-like services, or provider-backed workflows without explicit user confirmation.\n- Treat indirect API usage inside scripts, tests, release checks, PR tooling, and review automation as confirmation-required too.\n- Prefer local, static, mocked, or offline checks. If a recommended verification would touch a provider, report the command and ask before running it.\n- `npm run check:supabase-project`, live PR/CI tooling, answer-generation checks, ingestion checks against live services, and release gates that call providers are not automatic.\n\n\n\n\n\n# `upload` shortcut\n\nWhen the user types exactly:\n\nupload\n\nas the entire task message, treat it as a shortcut for the safe Git handoff workflow below.\n\nThe goal is to leave useful completed work safely committed and, where safe, pushed to the current feature branch. The goal is not to merge into main, delete branches, discard work, force-push, close PRs, deploy, or perform destructive cleanup without explicit user confirmation.\n\n## Protected and base branches\n\nTreat `main`, `master`, `develop`, and `release/*` as protected/base branches for this workflow.\n\nIf `upload` is run while on `main`, automatically create or use a branch named exactly `temporary` before staging, committing, or pushing, then continue the upload workflow from `temporary`:\n\n- If neither local `temporary` nor `origin/temporary` exists, run `git switch -c temporary`.\n- If local `temporary` exists and is not checked out in another worktree, switch to it only when it is clearly safe.\n- If `origin/temporary` exists, use it only when it is clearly the matching intended branch.\n- If any `temporary` branch state is ambiguous, diverged, checked out elsewhere, or unsafe, stop and ask instead of overwriting.\n\nIf already on a non-protected feature branch, continue using that branch.\n\n## Required inspection\n\nStart with read-only inspection before making changes. Check:\n\n- Current branch or detached HEAD state\n- `git status`\n- Staged, unstaged, and untracked files\n- Recent commits relevant to the current branch\n- Remote configuration and upstream branch\n- Whether the branch is ahead, behind, or diverged\n- Whether the current branch appears protected/base\n- Other Git worktrees, if detectable\n- Available checks such as tests, lint, type check, or build scripts\n- Existing branch, commit, PR, and release-flow conventions\n\nDo not assume branch names, remotes, package managers, test commands, deployment targets, or project structure. Inspect first.\n\n## Safe actions allowed without further confirmation\n\nWhen the repository state makes it clearly safe, you may:\n\n- Stage coherent completed changes that clearly belong together\n- Create one or more logical commits with clear messages based on the diff\n- Fast-forward pull only when there are no local commits or conflict risks\n- Push the current non-protected feature branch if it has a valid upstream\n- Set an upstream for the current feature branch only when the correct remote and branch name are obvious\n- Leave the worktree clean by committing safe completed changes\n\n## Actions requiring explicit confirmation\n\nDo not perform these without asking the user first:\n\n- `git reset --hard`\n- `git clean -fd` or other destructive cleanup\n- Discarding, overwriting, or reverting uncommitted changes\n- Deleting local or remote branches\n- Renaming branches\n- Force-pushing\n- Rebasing a shared/public branch\n- Resolving divergent branch history\n- Merging into `main`, `master`, `develop`, `release/*`, or any protected/base branch\n- Closing pull requests\n- Changing GitHub default branch, branch protection, repository settings, or deployment settings\n- Modifying production data or deployment configuration\n- Committing secrets, credentials, tokens, private keys, or sensitive local configuration\n- Updating branch references where the correct replacement branch is ambiguous\n\nIf any of these seem necessary, stop and report what is risky, why it is risky, the recommended next step, and the exact confirmation needed.\n\n## Mixed, suspicious, or unsafe changes\n\nDo not automatically commit files that look like `.env` files, credentials, secrets, logs, caches, build artifacts, editor or OS files, temporary/debug files, or generated files not normally committed by this project. Report only the path and concern for possible secrets; never print secret values.\n\nIf changes appear unrelated, incomplete, experimental, or WIP, do not commit everything together automatically. Commit only clearly coherent completed changes when safe; otherwise summarize the groups and ask what should be included.\n\n## Branch cleanup and reference updates\n\nDuring `upload`, branch cleanup is limited to the current branch and its upstream unless the user explicitly asks for `branch-cleanup`, branch hygiene, deletion candidates, or stale branch review.\n\nDo not enumerate, diff, or re-review unrelated stale branches during a normal upload/handoff. If the user explicitly asks for branch cleanup, first apply `docs/branch-review-ledger.md` to skip unchanged reviewed branches, then follow `docs/branch-cleanup-guide.md`.\n\nIf stale, inappropriate, merged, or unnecessary current-branch references are detected, list cleanup candidates but do not delete or rename branches automatically.\n\nBefore recommending deletion or rename for the current branch, audit accessible references including `.github/workflows/*`, CI/CD config, deployment config, scripts, package scripts, docs, release notes or release scripts, safe environment/config files, branch-specific config, open PR metadata if accessible, and GitHub branch protection/default branch metadata if safely accessible.\n\nUpdate repo-tracked references to a renamed or replacement branch only when the old branch reference is clearly found, the replacement is obvious, the change is low-risk, and the user has approved the branch rename or deletion. If the replacement is unclear, report the reference and ask what it should point to.\n\n## Syncing and verification\n\nDo not rebase, merge, or resolve remote divergence automatically. Fast-forward pulls are allowed only when clearly safe. Push only the current non-protected feature branch when clearly safe.\n\nRun the smallest relevant checks that are available and appropriate, such as tests, lint, type check, or build checks. Do not claim checks passed unless they were actually run. If checks cannot be run, explain why and state the command that would normally be used.\n\n## Final report\n\nAfter completing `upload`, summarize the current branch and worktree state, whether the worktree is clean, what changed, files committed, commit hash and message if created, whether anything was pushed, remote branch and likely PR target, checks run and results, checks not run and why, current-branch cleanup candidates or why broader branch cleanup was skipped, branch references found or updated, risky actions skipped, and exact confirmation needed for any recommended follow-up.\n\n\n\n\n\n## Codex productivity defaults\n\n- Treat terse prompts as workflow shortcuts when the intent is clear. If the user says `run`, execute `npm run ensure`, verify the project identity through that helper, and return the printed local URL without a long log dump.\n- For non-trivial changes, start from concrete repo state: branch, `git status`, relevant package scripts, recent failures, and local logs such as `dev-server.log` when runtime behavior is involved. For architecture and module orientation, read `docs/codebase-index.md` (routes: `docs/site-map.md`).\n- For UI, browser, styling, routing, accessibility, or screenshot work, run `npm run ensure` before opening the app, then use browser QA and the smallest relevant UI proof before broader gates.\n- Prefer the smallest failing check first. For this repo, use focused Vitest or Playwright targets before widening to `npm run verify:cheap`, `npm run verify:ui`, or `npm run verify:release`.\n- When the user says `safely`, preserve unrelated staged, unstaged, and untracked work; stop only clearly repo-owned transient processes; and verify the result instead of doing broad cleanup.\n- After auth, Supabase, ingestion, answer generation, search/ranking, clinical output, or source-governance changes, run the smallest domain check plus `npm run check:production-readiness`. Run `npm run check:supabase-project` after Supabase env/config changes.\n- For handoff, archive-safety, or upload-style requests, inspect branch/upstream/status first, run the appropriate verification gate, and only commit or push when the request explicitly asks for that workflow.\n- For codebase appraisal exports, stage outside the repo, include `EXPORT_MANIFEST.md`, exclude secrets/dependencies/build outputs/local state, and verify the archive can be opened before handoff.\n- When a repeated repo-specific workflow is discovered, update this file or ask the user whether it should be remembered.\n\n\n\n## Codex GitHub review behavior\n\nThese instructions apply to Codex GitHub pull request reviews and Codex tasks started from PR comments.\n\n- Keep automatic reviews focused and cost-conscious.\n- Prioritize high-confidence findings that affect correctness, security, privacy, data loss, auth/permissions, migrations, API contracts, production reliability, clinical behavior, source governance, or user-facing behavior.\n- Do not comment on formatting, naming, style, minor cleanup, or speculative refactors unless they create a real bug or maintainability risk.\n- Prefer fewer, stronger findings over exhaustive low-value review comments.\n- A finding must cite concrete changed code and explain the failure mode.\n- Do not suggest broad rewrites during review. Recommend the smallest change that resolves the issue.\n- Do not propose or start fixes unless explicitly asked with an `@codex fix...` or `@codex resolve...` comment, or when the repository's Codex auto-resolve workflow posts that command.\n\n### Severity calibration\n\n- P0: active security exposure, data loss/corruption already possible, severe production outage risk, credential leakage, or a critical issue that must be fixed immediately.\n- P1: security vulnerability, auth bypass, data exposure/loss, destructive migration risk, production-breaking regression, public API contract break, severe clinical/user-facing bug, or missing validation with realistic exploit/failure impact.\n- P2: important correctness bug, missing behavior test for meaningful changed behavior, edge case likely to affect users, reliability issue, unsafe assumption, or maintainability issue that will likely cause defects.\n- P3: style, naming, formatting, small cleanup, speculative improvements, or optional refactors. Avoid raising these in automatic reviews unless explicitly requested.\n\nFor GitHub automatic reviews, focus mainly on P1-level findings. If a P2 issue is important enough to block the PR, explain why it should be treated as P1.\n\n### PR risk detection\n\nWhen reviewing, identify whether the PR touches any high-risk area:\n\n- authentication or authorization\n- user data, privacy, or private document access\n- database schema, migrations, RLS, SECURITY DEFINER functions, or Supabase privileges\n- clinical answer generation, source governance, retrieval/ranking, ingestion, or document access\n- payment, billing, subscriptions, or quotas\n- public API contracts\n- production configuration or deployment behavior\n- background jobs, scheduled tasks, workers, or queue processing\n- file upload/download or generated document access\n- AI/API provider calls, paid external services, or credential-dependent workflows\n\nIf a high-risk area is touched, review more carefully for regressions, missing tests, rollback/safety notes, and conservative failure behavior.\n\n### Cost and usage control\n\nAvoid broad repeated review passes. Do not request exhaustive review behavior unless the PR touches security, auth, data loss, migrations, billing, production reliability, clinical output, source governance, or private document access. Prefer targeted validation and targeted review comments.\n\n### Fix behavior\n\nWhen explicitly asked to fix or resolve review findings:\n\n- Always fix P0 and P1 findings using the best minimal fix.\n- For P2 and lower-severity findings, decide whether the issue is worth fixing automatically.\n- Fix a P2 or lower finding only when the fix is clear, scoped, low-risk, and testable.\n- Do not automatically fix a P2 or lower finding when it requires broad refactoring, product judgment, dependency changes, credentials, paid/external APIs, large design decisions, or risky behavior changes.\n- If a P2 or lower finding is not worth fixing automatically, comment with the reason and the recommended human decision, then resolve the review conversation when supported.\n- Preserve unrelated work and avoid opportunistic refactors.\n- Do not add dependencies unless the issue cannot reasonably be fixed without one.\n- Do not change secrets, credentials, environment configuration, billing settings, deployment settings, or external service setup unless explicitly requested.\n- Do not use external APIs, paid services, credentials, secrets, live Supabase projects, or OpenAI provider calls unless explicitly authorized.\n- If a finding is ambiguous, unsafe to fix automatically, or requires a large rewrite, stop and explain the decision instead of guessing.\n- Add or update the smallest relevant test when the issue affects behavior.\n- Run the narrowest relevant validation for the touched surface before broader suites.\n- Summarize fixed issues, changed files, validation run, and any remaining human decisions.\n\n### Review comment lifecycle\n\n- Treat closing review conversations as part of the task when asked to fix or resolve comments.\n- After fixing a P0 or P1 finding, reply with the fix summary and resolve the review conversation when supported by GitHub permissions/tooling.\n- After fixing an approved P2 or lower finding, reply with the fix summary and resolve the review conversation when supported.\n- After deciding not to fix a P2 or lower finding, reply with the reason, note whether it is deferred or not actionable, and resolve the review conversation when supported.\n- Do not leave a review conversation open after it has been fixed or explicitly dispositioned.\n- If GitHub permissions/tooling do not allow resolving a review conversation, leave a clear reply that says the issue is fixed or dispositioned and that the conversation is ready for a human to resolve.\n\n### Automatic resolve trigger\n\nAutomatic Codex review is review-only by default. This repository includes `.github/workflows/codex-autofix-review-comments.yml`, which requests the resolve task automatically after Codex posts a PR review or inline review comment.\n\n- The workflow must only trigger from Codex review bot reviews or comments on open pull requests.\n- Match the trusted Codex connector bot by exact login and bot type; do not use substring login checks.\n- Keep per-pull-request concurrency on the authorized job, not the whole workflow, so unrelated review comments cannot displace a pending Codex request.\n- Pin the supported Node 24-based `actions/github-script` release to its reviewed immutable commit SHA.\n- The workflow must skip review-thread replies and auto-resolve request comments so Codex fix summaries do not re-trigger the workflow.\n- The workflow must ask Codex to resolve only actionable Codex review findings for the triggering pull request and current head using these repository instructions.\n- The workflow may request one repair per pull-request head SHA, capped at three automatic repair cycles per pull request.\n- Only trust a pull-request deduplication marker when it was posted by the GitHub Actions bot.\n- Permission failures while reading or creating pull-request comments must fail the workflow visibly, not return a successful soft-skip.\n- The workflow must not run Codex directly with API credentials.\n- P0 and P1 findings should always be fixed.\n- P2 and lower findings should be fixed only when clear, scoped, low-risk, and testable; otherwise explain the decision and resolve or mark ready for human resolution.\n\n### Primary PR command\n\n`@codex resolve actionable Codex review findings for this pull request and current head using the repository instructions. Always fix P0 and P1 findings. For P2 and lower findings, decide whether each is worth fixing automatically. Fix clear, scoped, low-risk issues with the best minimal change; otherwise reply explaining why the issue is deferred or not actionable. Do not update the branch from main, address unrelated reviews, broaden scope, or create more than one scoped fix commit unless explicitly asked. After each fix or decision, resolve the review conversation if supported. Do not use external APIs, paid services, credentials, dependency changes, or broad refactors unless explicitly authorized. Add targeted tests where behavior changes and run the narrowest relevant validation.`\n\n## Cursor Cloud specific instructions\n\nDurable notes for Cloud Agents. Standard commands live in `README.md` and `package.json`; only non-obvious caveats are captured here.\n\n- Runtime: the app hard-requires Node 24.x / npm 11.x (`engine-strict`, and `scripts/dev-free-port.mjs` exits on any other major). Node 24 is installed via nvm and symlinked into `/usr/local/cargo/bin` (first entry in `PATH`) so `node`/`npm` resolve to v24 in every shell. If a shell ever resolves `/exec-daemon/node` (v22) instead, prepend `\"$HOME/.nvm/versions/node/v24.18.0/bin\"` to `PATH`.\n- Live vs demo mode: the app auto-detects. When the Supabase + OpenAI env vars below are present (set them as Cloud Agent **Secrets** so they inject into `.env.local`/`process.env`), `isDemoMode()` (`src/lib/env.ts`) is false and the app runs against the live `Clinical KB Database` project (~2000 indexed docs) with OpenAI answer generation. When they are absent, dev auto-falls back to demo mode using the synthetic corpus in `src/lib/demo-data.ts` / `public/demo-documents/`. Required for live mode: `NEXT_PUBLIC_SUPABASE_URL`, `SUPABASE_PROJECT_REF`, `SUPABASE_PROJECT_NAME`, `NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY` (`sb_publishable_…`), `SUPABASE_SERVICE_ROLE_KEY` (accepts the `sb_secret_…` secret key), `OPENAI_API_KEY`. Keep `RAG_PROVIDER_MODE=auto` so OpenAI is used with graceful source-only fallback. `E2E_USER_EMAIL`/`E2E_USER_PASSWORD` power CI env-check and Playwright.\n- Live-mode caveat: `RAG_PROVIDER_MODE=auto` attempts OpenAI (fast → strong route); if generation fails the built-in quality gates it silently degrades to a deterministic \"Source-only\" answer that still cites real documents — this is expected, not a failure. The header sign-in UI exposes magic-link + OAuth only (no password field), but the `/api/answer` + retrieval flow works server-side without a browser session.\n- What still won't run in this VM even with secrets: `npm run worker` also needs the Python OCR stack (`worker/python/requirements.txt`) and heavy parsing deps; Supabase edge functions need Deno v2.x + deployment. `verify:release` additionally runs governance/eval gates. Treat missing-secret failures of `check:supabase-project`/`verify:release` in demo mode as expected, not regressions.\n- Dev server: `npm run dev` selects a stable per-project localhost port (e.g. `4461`), binds `0.0.0.0`, and prints the exact URL. Never assume port 3000/3001/3002. `npm run ensure` starts/verifies it in the background.\n- Verification without secrets: `npm run lint`, `npm run typecheck`, and `npm run test` (vitest) all pass offline. `npm run verify:cheap` also runs runtime, GitHub Actions pin, CI-scope, and sitemap checks. `npm run verify:pr-local` adds format, conditional build/client-bundle scanning, and code-backed offline RAG tests; browser, Docker/Supabase, audit, and provider checks remain separate.\n\n",{"_621":975,"_602":603,"_623":609},{"_624":976,"_626":-5,"_42":-5,"_627":-5,"_628":-5,"_96":977,"_92":630},[978,979],"developer",{"_46":981,"_92":966},{"_46":980,"_92":966},"\n## Skills\nA skill is a set of local instructions to follow that is stored in a `SKILL.md` file. Below is the list of skills that can be used. Each entry includes a name, description, and file path so you can open the source for full instructions when using a specific skill.\n### Available skills\n- imagegen: Generate or edit raster images when the task benefits from AI-created bitmap visuals such as photos, illustrations, textures, sprites, mockups, or transparent-background cutouts. Use when Codex should create a brand-new image, transform an existing image, or derive visual variants from references, and the output should be a bitmap asset rather than repo-native code or vector. Do not use when the task is better handled by editing existing SVG/vector/code-native assets, extending an established icon or logo system, or building the visual directly in HTML/CSS/canvas. (file: /opt/codex/skills/.system/imagegen/SKILL.md)\n- openai-docs: Use when the user asks how to build with OpenAI products or APIs and needs up-to-date official documentation with citations, help choosing the latest model for a use case, or model upgrade and prompt-upgrade guidance; prioritize OpenAI docs MCP tools, use bundled references only as helper context, and restrict any fallback browsing to official OpenAI domains. (file: /opt/codex/skills/.system/openai-docs/SKILL.md)\n- plugin-creator: Create and scaffold plugin directories for Codex with a required `.codex-plugin/plugin.json`, optional plugin folders/files, and baseline placeholders you can edit before publishing or testing. Use when Codex needs to create a new local plugin, add optional plugin structure, or generate or update repo-root `.agents/plugins/marketplace.json` entries for plugin ordering and availability metadata. (file: /opt/codex/skills/.system/plugin-creator/SKILL.md)\n- skill-creator: Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations. (file: /opt/codex/skills/.system/skill-creator/SKILL.md)\n- skill-installer: Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including private repos). (file: /opt/codex/skills/.system/skill-installer/SKILL.md)\n### How to use skills\n- Discovery: The list above is the skills available in this session (name + description + file path). Skill bodies live on disk at the listed paths.\n- Trigger rules: If the user names a skill (with `$SkillName` or plain text) OR the task clearly matches a skill's description shown above, you must use that skill for that turn. Multiple mentions mean use them all. Do not carry skills across turns unless re-mentioned.\n- Missing/blocked: If a named skill isn't in the list or the path can't be read, say so briefly and continue with the best fallback.\n- How to use a skill (progressive disclosure):\n 1) After deciding to use a skill, open its `SKILL.md`. Read only enough to follow the workflow.\n 2) When `SKILL.md` references relative paths (e.g., `scripts/foo.py`), resolve them relative to the skill directory listed above first, and only consider other paths if needed.\n 3) If `SKILL.md` points to extra folders such as `references/`, load only the specific files needed for the request; don't bulk-load everything.\n 4) If `scripts/` exist, prefer running or patching them instead of retyping large code blocks.\n 5) If `assets/` or templates exist, reuse them instead of recreating from scratch.\n- Coordination and sequencing:\n - If multiple skills apply, choose the minimal set that covers the request and state the order you'll use them.\n - Announce which skill(s) you're using and why (one short line). If you skip an obvious skill, say why.\n- Context hygiene:\n - Keep context small: summarize long sections instead of pasting them; only load extra files when needed.\n - Avoid deep reference-chasing: prefer opening only files directly linked from `SKILL.md` unless you're blocked.\n - When variants exist (frameworks, providers, domains), pick only the relevant reference file(s) and note that choice.\n- Safety and fallback: If a skill can't be applied cleanly (missing files, unclear instructions), state the issue, pick the next-best approach, and continue.\n","\nFilesystem sandboxing defines which files can be read or written. `sandbox_mode` is `danger-full-access`: No filesystem sandboxing - all commands are permitted. Network access is enabled.\nApproval policy is currently never. Do not provide the `sandbox_permissions` for any reason, commands will be rejected.\n","turn/started",{"_602":603,"_87":984},{"_103":-5,"_42":609,"_610":985,"_612":613,"_614":986},[],"inProgress",{"_614":988,"_602":603},{"_989":990,"_92":991},"activeFlags",[],"active","thread/started",{"_994":995},"thread",{"_996":-5,"_997":-5,"_998":999,"_1000":1001,"_669":670,"_1002":15,"_1003":-5,"_1004":-5,"_1005":-5,"_1006":1007,"_42":603,"_1008":1009,"_367":-5,"_1010":-5,"_256":1011,"_1012":396,"_1013":-5,"_674":1014,"_614":1015,"_1016":-5,"_77":1017,"_1018":1001},"agentNickname","agentRole","cliVersion","0.128.0","createdAt",1783878849,"ephemeral","extra","forkedFromId","gitInfo","historyMode","legacy","modelProvider","openai","parentThreadId","/opt/codex/sessions/2026/07/12/rollout-2026-07-12T17-54-09-019f5777-1236-78c1-a74e-46cd4a8315ce.jsonl","preview","recencyAt","vscode",{"_92":618},"threadSource",[],"updatedAt",[],"messages",[1022],{"_42":1023,"_1024":1025,"_1026":1027,"_1028":1027,"_624":1029,"_614":1030,"_626":-5,"_1031":32,"_1032":1033,"_1034":1035,"_1036":-5},"b35f6eaa-bc8d-4ee2-b5b4-ea19664ba084","author",{"_96":512,"_367":-5,"_1032":1045},"create_time",1783878848.301272,"update_time",{"_1041":46,"_1042":1043},"finished_successfully","weight","metadata",{"_1037":1038},"recipient","all","channel","l1239dk1",{"_1039":1040},"inline_comments",[],"content_type","parts",[1044],"@Codex resolve all comments\nfix(rag): honor preformatted answers, render high-yield bold, guard safety caveats + retrieval telemetry\n\n## Summary\n\nRAG review pass — safe, offline-provable improvements to how answers are formatted/rendered, plus retrieval observability. **No retrieval-ranking, scoring, cache-key, or answer-generation logic was changed.**\n\n- **F1 — client honors `preformatted`.** The server exempts deterministic document-support-list and table/visual answers from the prose sanitizer, but the client re-ran it unconditionally and deleted their document names / facility codes on display. The client now mirrors the server contract (`answer.preformatted && answer.grounded`) via a lossless `normalizePreformattedDisplayText`, threaded through the display chain (`display-text.ts`, `answer-content.tsx`, `ClinicalDashboard.tsx`, `answer-result-surface.tsx`, `output-panel.tsx`, `evidence-panels.tsx`).\n- **F3 — high-yield bold reaches the screen; copy draft is clean.** The primary answer renders via ``, but `polishClinicalAnswerProse` stripped `**` first, so server emphasis (and the verified-vs-unverified number signal) never rendered. Added a **display-only** `preserveBold` (the shared server answer-gen path is unchanged) and stopped the copy/paste clinical draft from leaking literal `**`.\n- **F4 — safety caveats can't be truncated away.** The compact primary-answer cap now always keeps a fragment carrying a safety signal (withhold/stop/threshold/escalate/…); byte-identical output when none is present.\n- **F8 — retrieval telemetry.** The terminal lexical RPCs (`match_document_chunks_text`, `match_document_table_facts_text`, `match_documents_for_query`) swallowed RPC errors with no signal; they now record `hybrid_rpc_errors` before the unchanged `return []` (retrieval results byte-identical).\n- **F7 — owner-filter drift migration (spec).** Read-only live inspection confirmed **all 8 primary retrieval RPCs already use the fail-closed `retrieval_owner_matches`** — no live hole; the gap is committed-source reproducibility (fresh rebuilds/previews/DR get the stale fail-open bodies). Because live has diverged forward and this env has no Postgres DSN, the migration is a replay-safe, verified, **owner-runnable byte-perfect codification spec** (runnable fail-closed truth-table guard + exact `pg_get_functiondef` dump command). It also flags two non-primary functions still carrying a fail-open inline predicate (`match_document_embedding_fields_text`, `get_related_document_metadata`).\n\n## Verification\n\n- [x] Offline gates green: `typecheck`, `lint`, `format:check`, full `vitest` (1655 passed, 1 skipped), `eval:rag:offline` (59). (`verify:pr-local` constituents run individually.)\n- [x] `@critical` demo answer-flow Playwright test green (exercises the modified `plain-answer-response` render path).\n- [x] **`npm run eval:retrieval:quality` — 36/36** (belt-and-suspenders; doc_recall@5=1, content_recall@5=1, hit@k=1, content_mrr@10=0.9255, force-embedding failures=0). Confirms F8 did not disturb retrieval.\n- [~] `npm run eval:quality -- --rag-only --limit 8` — 7/8 grounded (0.875). The one miss (`discharge-documentation`) is **pre-existing and unrelated to this PR**: it fails on grounding (`route=extractive, model=none`), produced entirely by retrieval-selection/grounding code this PR does not touch (the `rag.ts` diff is 3 additive telemetry lines that fire only on RPC error, of which there were none). Its `expectedFiles` is an intentional synthetic alias (`eval-document-matching.ts`), so it is not a stale-fixture issue. Tracked as a separate clinical-governance calibration follow-up.\n\n## Clinical Governance Preflight\n\n- [x] Source-backed claims still require linked source verification before clinical use (unchanged; the \"Source-only\" disclosure and verify-first copy are preserved).\n- [x] No patient-identifiable document workflow was introduced or expanded.\n- [x] Supabase target remains `Clinical KB Database` (`sjrfecxgysukkwxsowpy`) — verified via `check:supabase-project`.\n- [x] Service-role keys and private document access remain server-only (no change; F8 is server-side telemetry only).\n- [x] Demo/synthetic content remains clearly separated from real clinical sources.\n- [x] Source metadata, review status, and outdated/unknown-source behavior remain conservative (untouched).\n- [x] No clinical decision-support behavior changed — these are display-formatting + observability changes; retrieval ranking and answer generation are unchanged, so no TGA SaMD impact.\n\n## Notes\n\n- The F7 migration is intentionally a verified spec, not a functional schema change — completing it (appending the byte-perfect live RPC bodies) requires the owner's DB connection string and a preview-branch + golden-eval verification before it reaches live.\n\n🤖 Generated with [Claude Code](https://claude.com/claude-code)\n\n[supa]:fqapdpsewnpnwniwmopy\n**Updates to [Preview Branch (claude/rag-review-improvements-f1bf84) ↗︎](https://supabase.com/dashboard/project/fqapdpsewnpnwniwmopy)**\n\n| Deployments | Status | Updated |\n| ----------- | --------------------------- | ------------------------- |\n| Database | ✅ | Sun, 12 Jul 2026 17:51:15 UTC |\n| Services | ✅ | Sun, 12 Jul 2026 17:51:15 UTC |\n| APIs | ✅ | Sun, 12 Jul 2026 17:51:15 UTC |\n\nTasks are run on every commit but only new migration files are pushed.\nClose and reopen this PR if you want to apply changes from existing seed or migration files.\n\n| Tasks | Status | Updated |\n| -------------- | ---------------------------- | -------------------------- |\n| Configurations | ✅ | Sun, 12 Jul 2026 17:51:17 UTC |\n| Migrations | ✅ | Sun, 12 Jul 2026 17:51:19 UTC |\n| Seeding | ✅ | Sun, 12 Jul 2026 17:51:20 UTC |\n| Edge Functions | ✅ | Sun, 12 Jul 2026 17:51:21 UTC |\n\n

\n\n\n\n\nView logs for this [Workflow Run ↗︎](https://supabase.com/dashboard/project/fqapdpsewnpnwniwmopy/branches).\nLearn more about [Supabase for Git ↗︎](https://supabase.com/docs/guides/platform/branching).\n\n\n\n\n[![Review Change Stack](https://storage.googleapis.com/coderabbit_public_assets/review-stack-in-coderabbit-ui.svg)](https://app.coderabbit.ai/change-stack/BigSimmo/Database/pull/514?utm_source=github_walkthrough&utm_medium=github&utm_campaign=change_stack)\n\n\n\n\n> [!NOTE]\n> Currently processing new changes in this PR. This may take a few minutes, please wait...\n> \n>

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⚙️ Run configuration

\n> \n> **Configuration used**: Organization UI\n> \n> **Review profile**: CHILL\n> \n> **Plan**: Pro Plus\n> \n> **Run ID**: `548a5329-8182-4061-ac05-6a518e363057`\n> \n>

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📥 Commits

\n> \n> Reviewing files that changed from the base of the PR and between eca2c84f1d241c4cbb282b8d8f621b2201afbc92 and 10f39fd8a92e03aab569c79e9af29aa11c626d3c.\n> \n>

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📒 Files selected for processing (6)

\n> \n> * `src/components/clinical-dashboard/answer-content.tsx`\n> * `src/lib/rag-answer-text.ts`\n> * `supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\n> * `tests/answer-content.test.ts`\n> * `tests/rag-answer-text.test.ts`\n> * `tests/source-text-sanitizer.test.ts`\n> \n>

\n> \n> ```ascii\n> _________________________________________________________________________________________________________________\n> < Estimate the order of your algorithms. Get a feel for how long things are likely to take before you write code. >\n> -----------------------------------------------------------------------------------------------------------------\n> \\\n> \\ (\\__/)\n> (•ㅅ•)\n> / 　づ\n> ```\n\n\n\n\n\n

📝 Walkthrough

\n\n## Walkthrough\n\nPreformatted answer handling now preserves structured content during sanitization and rendering, supports controlled bold-marker retention, protects safety fragments during compaction, strips bold markers from copy text, and records hybrid retrieval RPC failures through search telemetry.\n\n### Changes\n\n**Answer display handling**\n\n|Layer / File(s)|Summary|\n|---|---|\n|**Display sanitization contracts**
`src/components/clinical-dashboard/display-text.ts`, `src/lib/source-text-sanitizer.ts`, `tests/display-text.test.ts`, `tests/source-text-sanitizer.test.ts`|Preformatted normalization, optional bold preservation, and bolded sub-bullet handling are implemented and covered by tests.|\n|**Answer formatting and safety retention**
`src/components/clinical-dashboard/answer-content.tsx`, `src/lib/rag-answer-text.ts`, `src/lib/answer-render-policy.ts`, `tests/answer-content.test.ts`, `tests/rag-answer-text.test.ts`, `tests/answer-render-policy.test.ts`|Answer formatting accepts display options, retains safety-signal fragments beyond compaction limits, and removes bold markers from copy text.|\n|**Answer rendering integration**
`src/components/ClinicalDashboard.tsx`, `src/components/clinical-dashboard/answer-result-surface.tsx`, `src/components/clinical-dashboard/evidence-panels.tsx`, `src/components/clinical-dashboard/output-panel.tsx`|Grounded preformatted state is propagated to latest and prior answer surfaces and clinical detail rendering.|\n\n**Retrieval RPC telemetry**\n\n|Layer / File(s)|Summary|\n|---|---|\n|**Hybrid RPC error reporting**
`src/lib/rag.ts`, `tests/rag-offline-answer.test.ts`|Lexical, document, and table-fact RPC failures are recorded through search telemetry, while offline tests inject lexical RPC errors and verify ungrounded fail-closed output.|\n\n**Estimated code review effort:** 3 (Moderate) | ~25 minutes\n\n### Sequence Diagram(s)\n\n```mermaid\nsequenceDiagram\n participant ClinicalDashboard\n participant sanitizeAnswerDisplayText\n participant NaturalLanguageAnswer\n ClinicalDashboard->>sanitizeAnswerDisplayText: sanitize grounded preformatted text\n ClinicalDashboard->>NaturalLanguageAnswer: pass raw answer and preformatted state\n NaturalLanguageAnswer->>sanitizeAnswerDisplayText: format with preformatted and preserveBold options\n```\n\n

\n\n\n\n\n---\n\n\n> [!CAUTION]\n> ## Pre-merge checks failed\n> \n> Please resolve all errors before merging. Addressing warnings is optional.\n> \n> - [ ] Ignore\n\n\n### ❌ Failed checks (1 error, 1 warning)\n\n| Check name | Status | Explanation | Resolution |\n| :-----------------: | :--------- | :---------------------------------------------------------------------------------------------------------------------------------- | :-------------------------------------------------------------------------------------------------------------------------------- |\n| Verification Claims | ❌ Error | PR notes say \"Offline gates green\" and list passed checks (typecheck, lint, vitest, Playwright) without exact command/result pairs. | Rewrite each verification claim as \"Ran : passed\" or \"Not run: \" for every test/build/audit/browser check. |\n| Docstring Coverage | ⚠️ Warning | Docstring coverage is 54.84% which is insufficient. The required threshold is 70.00%. | Write docstrings for the functions missing them to satisfy the coverage threshold. |\n\n

✅ Passed checks (9 passed)

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✨ Finishing Touches

\n\n

📝 Generate docstrings

\n\n- [ ] Create stacked PR\n- [ ] Commit on current branch\n\n

🧪 Generate unit tests (beta)

\n\n- [ ] Create PR with unit tests\n- [ ] Commit unit tests in branch `claude/rag-review-improvements-f1bf84`\n\n

✨ Simplify code

\n\n- [ ] Create PR with simplified code\n- [ ] Commit simplified code in branch `claude/rag-review-improvements-f1bf84`\n\n

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\n\n\n\n\n---\n\n\n\n\n_{Comment `@coderabbitai help` to get the list of available commands.}\n\n\n**_{_{![P1 Badge](https://img.shields.io/badge/P1-orange?style=flat)}} Match full safety terms before truncating caveats**\n\nWhen a safety caveat appears after the first three fragments and uses normal wording such as “Escalate for senior review” or “Contraindicated in pregnancy”, this regex does not match it: the alternatives `escalat` and `contraindicat` are followed by the final `\\b`, so they only match the truncated stem, not `escalate`, `escalation`, `contraindicated`, or `contraindication`. In that scenario `safetyTail` stays empty and the compact answer cap can still hide the exact escalation/contraindication caveat this change is meant to preserve; use complete word forms or a prefix-safe pattern for these stems.\n\nUseful? React with 👍 / 👎.\n**_{_{![P1 Badge](https://img.shields.io/badge/P1-orange?style=flat)}} Include RPC bodies before applying this migration**\n\nThis file lives under `supabase/migrations`, so as soon as `db push`/preview reset applies it, Supabase records version `20260712000000` as complete; because the migration only runs the truth-table guard and leaves the actual `create or replace function` bodies as an owner TODO here, fresh previews/DR rebuilds still get the stale fail-open/sentinel-blind retrieval RPCs that the header says this migration codifies, and appending to this same migration later will not run in environments that already recorded it. Please land the dumped RPC definitions in an applyable migration instead of an already-runnable placeholder.\n\nUseful? React with 👍 / 👎.\n\n### 💡 Codex Review\n\nHere are some automated review suggestions for this pull request.\n\n**Reviewed commit:** `e87c446854`\n \n\n

ℹ️ About Codex in GitHub

\n
\n\n[Your team has set up Codex to review pull requests in this repo](https://chatgpt.com/codex/cloud/settings/general). Reviews are triggered when you\n- Open a pull request for review\n- Mark a draft as ready\n- Comment \"@codex review\".\n\nIf Codex has suggestions, it will comment; otherwise it will react with 👍.\n\n\n\n\nCodex can also answer questions or update the PR. Try commenting \"@codex address that feedback\".\n \n

\n_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\n\n

🧩 Analysis chain

\n\n🏁 Script executed:\n\n```shell\n#!/bin/bash\nset -euo pipefail\n\nprintf '\\n== display-text outline ==\\n'\nast-grep outline src/components/clinical-dashboard/display-text.ts --view expanded || true\n\nprintf '\\n== relevant symbols/usages ==\\n'\nrg -n \"normalizePreformattedDisplayText|polishClinicalAnswerProse|preserveBold|preformatted|PriorAnswerTurnSurface|display-text\" src/components/clinical-dashboard -S || true\n\nprintf '\\n== caller search across repo ==\\n'\nrg -n \"PriorAnswerTurnSurface|preformatted: true|preserveBold:\" src -S || true\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 5961\n\n---\n\n🏁 Script executed:\n\n```shell\n#!/bin/bash\nset -euo pipefail\nast-grep outline src/components/clinical-dashboard/display-text.ts --view expanded || true\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 1494\n\n---\n\n🏁 Script executed:\n\n```shell\n#!/bin/bash\nset -euo pipefail\n\nprintf '\\n== display-text outline ==\\n'\nast-grep outline src/components/clinical-dashboard/display-text.ts --view expanded || true\n\nprintf '\\n== display-text relevant lines ==\\n'\nsed -n '1,320p' src/components/clinical-dashboard/display-text.ts | cat -n | sed -n '1,320p'\n\nprintf '\\n== callers and tests ==\\n'\nrg -n \"normalizePreformattedDisplayText|polishClinicalAnswerProse|preserveBold|preformatted|PriorAnswerTurnSurface\" src -S || true\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 19845\n\n---\n\n🏁 Script executed:\n\n```shell\n#!/bin/bash\nset -euo pipefail\nsed -n '1,280p' src/components/clinical-dashboard/display-text.ts | cat -n | sed -n '180,260p'\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 4098\n\n---\n\n🏁 Script executed:\n\n```shell\n#!/bin/bash\nset -euo pipefail\n\nprintf '\\n== source-text-sanitizer preformatted normalizer ==\\n'\nsed -n '280,340p' src/lib/source-text-sanitizer.ts | cat -n\n\nprintf '\\n== PriorAnswerTurnSurface ==\\n'\nsed -n '500,585p' src/components/ClinicalDashboard.tsx | cat -n\n\nprintf '\\n== related primary answer path ==\\n'\nsed -n '2840,2895p' src/components/ClinicalDashboard.tsx | cat -n\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 10940\n\n---\n\n🏁 Script executed:\n\n```shell\n#!/bin/bash\nset -euo pipefail\n\nprintf '\\n== NaturalLanguageAnswer ==\\n'\nsed -n '585,760p' src/components/ClinicalDashboard.tsx | cat -n\n\nprintf '\\n== search tests for sanitizeAnswerDisplayText / bold / preformatted ==\\n'\nrg -n \"sanitizeAnswerDisplayText|preformatted.*bold|\\\\*\\\\*|SafeBoldText|preserveBold\" src test tests __tests__ -S || true\n\nprintf '\\n== preformatted answer generation ==\\n'\nsed -n '1120,1195p' src/lib/rag-extractive-answer.ts | cat -n\nsed -n '1725,1765p' src/lib/rag-extractive-answer.ts | cat -n\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 50373\n\n---\n\n🏁 Script executed:\n\n```shell\n#!/bin/bash\nset -euo pipefail\n\nprintf '\\n== NaturalLanguageAnswer definition ==\\n'\nrg -n \"function NaturalLanguageAnswer|const NaturalLanguageAnswer|export function NaturalLanguageAnswer\" src/components/ClinicalDashboard.tsx -n -A 120 -B 20\n\nprintf '\\n== SafeBoldText usage around ClinicalDashboard ==\\n'\nrg -n \"SafeBoldText|parseSafeBoldText|

\n\n**Handle bold markers in the preformatted path.** `sanitizeAnswerDisplayText(..., { preformatted: true })` keeps `**...**` intact, and `PriorAnswerTurnSurface` renders that result in a plain `

`, so collapsed prior answers can show literal Markdown markers. Either strip/preserve bold explicitly in this branch or pass `preserveBold` through, and add a preformatted+bold regression test.\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@src/components/clinical-dashboard/display-text.ts` around lines 212 - 218,\nUpdate the preformatted branch in sanitizeAnswerDisplayText so its handling of\n**bold** markers matches options.preserveBold, preventing literal Markdown\nmarkers when PriorAnswerTurnSurface renders collapsed text. Pass the\npreserveBold setting through normalizePreformattedDisplayText or explicitly\nstrip markers as appropriate, and add a regression test covering preformatted\ntext with bold enabled.\n```\n\n

\n\n\n\n\n\n\n\n\n\n✅ Confirmed as addressed by @BigSimmo\n\n\n_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\n\n

🧩 Analysis chain

\n\n🏁 Script executed:\n\n```shell\nrg -n -A8 -B8 'rhValueHeadPattern|posNegValueHeadPattern|standaloneBloodValueLinePattern' src/lib/source-text-sanitizer.ts\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 3042\n\n---\n\n🏁 Script executed:\n\n```shell\nsed -n '560,630p' src/lib/source-text-sanitizer.ts\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 4338\n\n---\n\n🏁 Script executed:\n\n```shell\nrg -n -A4 -B4 'bold|RhD|blood.*bullet|standaloneBloodValueLinePattern|bloodValueWithNounTailLinePattern' src/lib/source-text-sanitizer.ts test src\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 50374\n\n---\n\n🏁 Script executed:\n\n```shell\nrg -n -A4 -B4 'bold|RhD|blood.*bullet|standaloneBloodValueLinePattern|bloodValueWithNounTailLinePattern' src test\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 50374\n\n---\n\n🏁 Script executed:\n\n```shell\npython3 - <<'PY'\nimport re\n\nsubBullet = re.compile(r'(?<=^|[\\r\\n]|[^\\d\\s]\\s)o(?=\\s+(?:\\*\\*)?(?:\\d|[A-Z][a-z0-9]|[A-Z]{2,}))')\nbloodLabelTail = re.compile(r'\\b(?:blood|abo|rh(?:d)?)\\s+(?:group|type):?\\s$', re.I)\ngroupTypeLabelTail = re.compile(r'\\b(?:group|type):?\\s$', re.I)\nqualifiedGroupTypeTail = re.compile(r'\\b[A-Za-z][\\w-]*\\s+(?:group|type):?\\s$', re.I)\nrhValueHead = re.compile(r'^\\s+rh(?:d)?\\b', re.I)\nposNegValueHead = re.compile(r'^\\s+(?:pos(?:itive)?|neg(?:ative)?)\\b', re.I)\nstandaloneBloodValueLine = re.compile(r'^o\\s+(?:rh(?:d)?(?:\\s+(?:pos(?:itive)?|neg(?:ative)?))?|pos(?:itive)?|neg(?:ative)?)$', re.I)\nbloodValueWithNounTailLine = re.compile(r'^o\\s+(?:rh(?:d)?\\s+)?(?:pos(?:itive)?|neg(?:ative)?)\\s+(?:blood(?!\\s+(?:cultures?|tests?|screens?|samples?|results?)\\b)|red\\s+cells?)\\b', re.I)\n\ncases = [\n \"o RhD negative\",\n \"o **RhD negative**\",\n \"blood group o RhD negative\",\n \"blood group o **RhD negative**\",\n \"group: o RhD negative\",\n \"group: o **RhD negative**\",\n \"group: o Negative\",\n \"group: o **Negative**\",\n \"risk group: o Negative\",\n \"risk group: o **Negative**\",\n]\n\nfor s in cases:\n print(\"CASE:\", s)\n for m in subBullet.finditer(s):\n offset = m.start()\n before = s[:offset]\n after = s[offset + len(m.group(0)):]\n atItemStart = offset == 0 or s[offset-1] in \"\\r\\n\"\n lineEnd = s.find(\"\\n\", offset)\n lineTail = s[offset: len(s) if lineEnd == -1 else lineEnd].strip()\n keep = False\n reason = None\n if bloodLabelTail.search(before):\n keep = True; reason = \"bloodLabelTail\"\n elif bloodValueWithNounTailLine.search(s[offset:]):\n keep = True; reason = \"bloodValueWithNounTailLine\"\n elif atItemStart and standaloneBloodValueLine.search(lineTail):\n keep = True; reason = \"standaloneBloodValueLine\"\n elif groupTypeLabelTail.search(before):\n if rhValueHead.search(after):\n keep = True; reason = \"groupType+rhValueHead\"\n elif posNegValueHead.search(after) and not qualifiedGroupTypeTail.search(before):\n keep = True; reason = \"groupType+posNegValueHead\"\n print(\" match\", m.span(), \"after=\", repr(after), \"keep=\", keep, reason)\n print()\nPY\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 916\n\n---\n\n🏁 Script executed:\n\n```shell\nrg -n -A4 -B4 'normalizeInlineBulletGlyphs|replaceSubBulletOGlyphs|bloodValueWithNounTailLinePattern|standaloneBloodValueLinePattern' src test\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 10491\n\n---\n\n\n\n

\n\n**Make the blood-value guards bold-aware.** \n`o **RhD negative**` and `group/type: o **Negative**` still bypass the blood-value checks because the guard patterns read the `**` markers literally. Match or strip the bold markers in those guards, and add regressions for line-start and label-prefixed bold blood values.\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@src/lib/source-text-sanitizer.ts` around lines 568 - 571, Update the\nblood-value guard patterns in source-text sanitization to recognize bold markers\naround values, including line-start forms such as “o **RhD negative**” and\nlabel-prefixed forms such as “group/type: o **Negative**”. Preserve existing\nnon-bold matching and add regression coverage for both bold cases.\n```\n\n

\n\n\n\n\n\n\n\n\n\n✅ Confirmed as addressed by @BigSimmo\n\n\n_🔒 Security & Privacy_ | _🟠 Major_ | _🏗️ Heavy lift_\n\n**Append the retrieval RPC definitions before merging.**\n\nThis migration ends at the marker and contains no `CREATE OR REPLACE FUNCTION` statements. A fresh rebuild therefore retains the stale fail-open, sentinel-blind RPC bodies described in Lines 18-22, so the intended tenancy contract is not reproducible. Append the exact live definitions and verify the migration contains all eight functions before landing.\n\n\n\n\n\n\n\nAlso applies to: 107-107\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn\n`@supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\naround lines 51 - 55, Append the exact live CREATE OR REPLACE FUNCTION\ndefinitions for all eight retrieval RPCs after the completion marker in the\nmigration, preserving their current tenancy and sentinel-handling behavior.\nVerify the migration contains all eight function definitions before merging.\n```\n\n

\n\n\n\n\n\n\n\n\n_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\n\n

🧩 Analysis chain

\n\n🏁 Script executed:\n\n```shell\n#!/usr/bin/env bash\nset -euo pipefail\npsql \"$SUPABASE_DB_URL\" -X -v ON_ERROR_STOP=1 -At <<'SQL'\nselect string_agg(\n pg_get_functiondef(p.oid) || E';\\n',\n E'\\n' order by p.proname, p.oid\n)\nfrom pg_proc p\njoin pg_namespace n on n.oid = p.pronamespace\nwhere n.nspname = 'public'\n and p.proname in (\n 'match_document_chunks_hybrid',\n 'match_document_chunks_text',\n 'match_document_lookup_chunks_text',\n 'match_document_table_facts_text',\n 'match_document_embedding_fields_hybrid',\n 'match_document_index_units_hybrid',\n 'match_documents_for_query',\n 'match_document_chunks'\n );\nSQL\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 203\n\n---\n\n🏁 Script executed:\n\n```shell\n#!/usr/bin/env bash\nset -euo pipefail\n\nfile='supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql'\nwc -l \"$file\"\nsed -n '45,75p' \"$file\" | cat -n\n```\n\nRepository: BigSimmo/Database\n\nLength of output: 2326\n\n---\n\n🌐 Web query:\n\n`PostgreSQL SELECT aggregate ORDER BY non-grouped column without GROUP BY behavior`\n\n💡 Result:\n\nIn PostgreSQL, you cannot use an aggregate function alongside non-grouped columns in a SELECT statement or ORDER BY clause without a GROUP BY clause, unless the non-grouped columns are functionally dependent on the grouped columns (such as being a primary key) [1][2][3]. When an aggregate function is present, PostgreSQL requires that all non-aggregate columns in the SELECT list, ORDER BY, and HAVING clauses must either be included in the GROUP BY clause or be wrapped in an aggregate function [1][3]. If you attempt to use an aggregate function without a GROUP BY clause while referencing ungrouped columns, PostgreSQL will raise error 42803: \"column must appear in the GROUP BY clause or be used in an aggregate function\" [2][3]. To achieve results without the standard grouping behavior, consider the following alternatives: 1. Window Functions: If you need to perform calculations across a set of rows without collapsing them into a single output row per group, use window functions (e.g., SUM(value) OVER (PARTITION BY category)) [4][5]. Window functions allow you to retain the original row identities while performing aggregations [5]. Note that window functions are evaluated after the GROUP BY and aggregate phases of query processing [5]. 2. Subqueries or CTEs: If you need to aggregate data and then join it back to the original rows for sorting or further selection, you can use a subquery or a Common Table Expression (CTE) to calculate the aggregates, and then join this result set back to the base table [6][7]. 3. Aggregate Ordering: If you specifically need an aggregate function to process input values in a specific order (e.g., for string concatenation or specific statistical aggregates), you can use the WITHIN GROUP (ORDER BY...) syntax [8][9]. For example, to order by a column that is not part of the GROUP BY clause while aggregating, you might first perform the aggregation in a subquery and then perform the ordering in an outer SELECT query [6][7].\n\nCitations:\n\n- 1: https://www.postgresql.org/docs/18/sql-select.html\n- 2: https://www.bytebase.com/reference/postgres/error/42803-column-must-appear-in-group-by-clause/\n- 3: https://pulse.support/kb/postgresql-grouping-error-42803\n- 4: https://www.postgresql.org/docs/18/functions-window.html\n- 5: https://www.postgresql.org/docs/devel/tutorial-window.html\n- 6: https://stackoverflow.com/questions/7870148/is-it-possible-to-have-an-sql-query-that-uses-agg-functions-in-this-way\n- 7: https://stackoverflow.com/questions/71946758/postgresql-column-must-appear-in-the-group-by-clause-or-be-used-in-an-aggregate\n- 8: https://www.postgresql.org/docs/19/functions-aggregate.html\n- 9: https://www.postgresql.org/docs/18/functions-aggregate.html\n\n---\n\n\n\n

\n\n**Move the ordering into `string_agg`.** The outer `ORDER BY p.proname` makes this aggregate-only query invalid in PostgreSQL; put the ordering inside `string_agg(... ORDER BY p.proname, p.oid)` and drop the trailing `ORDER BY`.\n\n

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn\n`@supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\naround lines 56 - 65, Update the commented psql query that builds rpc_bodies.sql\nso string_agg orders its inputs by p.proname and p.oid, and remove the trailing\nouter ORDER BY p.proname. Keep the existing function filtering and aggregation\nbehavior unchanged.\n```\n\n

\n\n\n\n\n\n\n\n\n**Actionable comments posted: 4**\n\n> [!CAUTION]\n> Some comments are outside the diff and can’t be posted inline due to platform limitations.\n> \n> \n> \n>

\n>

⚠️ Outside diff range comments (1)

\n> \n>
\n>
src/components/clinical-dashboard/answer-content.tsx (1)
\n> \n> `231-292`: _🎯 Functional Correctness_ | _🟠 Major_ | _⚡ Quick win_\n> \n> **Head fragments can still lose safety cues** `primaryAnswerDisplayText` only rescues `safetyTail`; if a safety cue appears in one of the first 3 fragments after word 85, truncation still drops it. Add a regression test in `tests/rag-answer-text.test.ts` for a long head fragment containing `withhold`/`do not`, and preserve safety-bearing head content when applying the cap.\n> \n>
\n>
🤖 Prompt for AI Agents
\n> \n> ```\n> Verify each finding against current code. Fix only still-valid issues, skip the\n> rest with a brief reason, keep changes minimal, and validate.\n> \n> In `@src/components/clinical-dashboard/answer-content.tsx` around lines 231 - 292,\n> The 85-word truncation in primaryAnswerDisplayText can remove safety signals\n> from the first three fragments. Update the head-cap logic to preserve\n> safety-bearing head content, including fragments matching\n> primaryAnswerSafetySignalPattern, while retaining the existing compact behavior\n> for non-safety text; add a regression case in rag-answer-text.test.ts covering a\n> long head fragment containing “withhold” or “do not”.\n> ```\n> \n>
\n> \n> \n> \n>
\n> \n>

\n\n

🧹 Nitpick comments (1)

\n\n
\n
tests/rag-offline-answer.test.ts (1)
\n\n`165-185`: _📐 Maintainability & Code Quality_ | _🔵 Trivial_ | _⚡ Quick win_\n\n**Assert the new telemetry contract directly.**\n\nThis test verifies fail-closed behavior, but it would still pass if `recordHybridRpcError` stopped recording `match_document_chunks_text`. Add an assertion at the telemetry or structured-logging boundary for RPC `match_document_chunks_text` and code `42P01`.\n\n
\n
🤖 Prompt for AI Agents
\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@tests/rag-offline-answer.test.ts` around lines 165 - 185, Extend the test\naround answerOffline to assert the telemetry or structured-logging boundary\nrecords an RPC error for match_document_chunks_text with code 42P01. Keep the\nexisting fail-closed assertions unchanged, and use the test’s existing telemetry\ncapture or spy mechanism rather than only checking the returned answer.\n```\n\n
\n\n\n\n
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\n\n

🤖 Prompt for all review comments with AI agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nInline comments:\nIn `@src/components/clinical-dashboard/display-text.ts`:\n- Around line 212-218: Update the preformatted branch in\nsanitizeAnswerDisplayText so its handling of **bold** markers matches\noptions.preserveBold, preventing literal Markdown markers when\nPriorAnswerTurnSurface renders collapsed text. Pass the preserveBold setting\nthrough normalizePreformattedDisplayText or explicitly strip markers as\nappropriate, and add a regression test covering preformatted text with bold\nenabled.\n\nIn `@src/lib/source-text-sanitizer.ts`:\n- Around line 568-571: Update the blood-value guard patterns in source-text\nsanitization to recognize bold markers around values, including line-start forms\nsuch as “o **RhD negative**” and label-prefixed forms such as “group/type: o\n**Negative**”. Preserve existing non-bold matching and add regression coverage\nfor both bold cases.\n\nIn\n`@supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`:\n- Around line 51-55: Append the exact live CREATE OR REPLACE FUNCTION\ndefinitions for all eight retrieval RPCs after the completion marker in the\nmigration, preserving their current tenancy and sentinel-handling behavior.\nVerify the migration contains all eight function definitions before merging.\n- Around line 56-65: Update the commented psql query that builds rpc_bodies.sql\nso string_agg orders its inputs by p.proname and p.oid, and remove the trailing\nouter ORDER BY p.proname. Keep the existing function filtering and aggregation\nbehavior unchanged.\n\n---\n\nOutside diff comments:\nIn `@src/components/clinical-dashboard/answer-content.tsx`:\n- Around line 231-292: The 85-word truncation in primaryAnswerDisplayText can\nremove safety signals from the first three fragments. Update the head-cap logic\nto preserve safety-bearing head content, including fragments matching\nprimaryAnswerSafetySignalPattern, while retaining the existing compact behavior\nfor non-safety text; add a regression case in rag-answer-text.test.ts covering a\nlong head fragment containing “withhold” or “do not”.\n\n---\n\nNitpick comments:\nIn `@tests/rag-offline-answer.test.ts`:\n- Around line 165-185: Extend the test around answerOffline to assert the\ntelemetry or structured-logging boundary records an RPC error for\nmatch_document_chunks_text with code 42P01. Keep the existing fail-closed\nassertions unchanged, and use the test’s existing telemetry capture or spy\nmechanism rather than only checking the returned answer.\n```\n\n

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🪄 Autofix (Beta)

\n\n✅ Autofix completed\n\n

\n\n---\n\n

ℹ️ Review info

\n\n

⚙️ Run configuration

\n\n**Configuration used**: Organization UI\n\n**Review profile**: CHILL\n\n**Plan**: Pro Plus\n\n**Run ID**: `7474c87f-ee2b-4c19-bea5-60ac243a0764`\n\n

\n\n

📥 Commits

\n\nReviewing files that changed from the base of the PR and between 9da527c555a817f248cc73a5a4ac8afe36b82dc3 and e87c446854c5089f16ef0fbda9d69eea59f8bf91.\n\n

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📒 Files selected for processing (16)

\n\n* `src/components/ClinicalDashboard.tsx`\n* `src/components/clinical-dashboard/answer-content.tsx`\n* `src/components/clinical-dashboard/answer-result-surface.tsx`\n* `src/components/clinical-dashboard/display-text.ts`\n* `src/components/clinical-dashboard/evidence-panels.tsx`\n* `src/components/clinical-dashboard/output-panel.tsx`\n* `src/lib/answer-render-policy.ts`\n* `src/lib/rag-answer-text.ts`\n* `src/lib/rag.ts`\n* `src/lib/source-text-sanitizer.ts`\n* `supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\n* `tests/answer-render-policy.test.ts`\n* `tests/display-text.test.ts`\n* `tests/rag-answer-text.test.ts`\n* `tests/rag-offline-answer.test.ts`\n* `tests/source-text-sanitizer.test.ts`\n\n

\n\n

\n\n\n\n> [!NOTE]\n> Autofix is a beta feature. Expect some limitations and changes as we gather feedback and continue to improve it.\n\n## Fixes Applied Successfully\n\nFixed 5 file(s) based on 4 unresolved review comments.\n\n\n\n**Files modified:**\n- `src/components/clinical-dashboard/display-text.ts`\n- `src/lib/source-text-sanitizer.ts`\n- `supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\n- `tests/display-text.test.ts`\n- `tests/source-text-sanitizer.test.ts`\n\n**Commit:** `d5ab4c38533d94613e527d7ef7cf388c00c14cd0`\n\nThe changes have been pushed to the `claude/rag-review-improvements-f1bf84` branch.\n\n**Time taken:** `6m 49s`\n\n@Codex please fix this issue.\n@Codex please fix this issue.\n### Summary\n* Replaced the placeholder/TODO migration section with an applyable codification note explaining that the migration now installs the eight primary retrieval RPC definitions and routes ownership through `retrieval_owner_matches(owner_filter, d.owner_id)`. [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL38-L44](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L38-L44)\n* Preserved the fail-closed/public-sentinel truth-table guard for `retrieval_owner_matches` before the RPC definitions are applied. [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL48-L77](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L48-L77)\n* Added applyable `CREATE OR REPLACE FUNCTION` definitions for the primary retrieval RPCs, including `match_document_chunks_hybrid`, `match_document_chunks_text`, `match_document_table_facts_text`, and `match_document_chunks`, so this migration no longer records successfully as a body-less placeholder. [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL79-L82](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L79-L82) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL287-L293](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L287-L293) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL436-L442](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L436-L442) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL791-L798](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L791-L798)\n\n### Git / PR\n* Committed changes on the current branch with commit `9fda499` (`fix(db): codify retrieval RPC owner gates`).\n* Created a PR via the `make_pr` tool with title: `fix(db): codify retrieval RPC owner gates`.\n\n**Testing**\n* ✅ `git diff --check`\n* ✅ `python3 - <<'PY' ... PY` — focused static validation confirmed exactly one definition for each of the eight primary retrieval RPCs, no fail-open `(owner_filter is null or .owner_id = owner_filter)` predicates in the appended RPC bodies, and each function body references `retrieval_owner_matches(owner_filter, ...)`.\n* ⚠️ `npm run check:retrieval-owner-migration` — could not run in this environment because local dependencies are absent (`tsx` not found) and the shell resolved Node `v20.20.2` instead of the repo-required Node 24.\n\n [View task →](https://chatgpt.com/s/cd_6a53b9b5185081919e366ebfbc367242)\n**Summary**\n* Updated the compact primary-answer safety matcher to recognize full safety terms such as `Escalate`, `escalation`, `Contraindicated`, and `contraindication`, preventing those caveats from being dropped during display compaction. [src/components/clinical-dashboard/answer-content.tsxL231-L235](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/src/components/clinical-dashboard/answer-content.tsx#L231-L235)\n* Exported `primaryAnswerDisplayText` so the compact-answer behavior can be covered directly in a focused regression test. [src/components/clinical-dashboard/answer-content.tsxL251-L256](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/src/components/clinical-dashboard/answer-content.tsx#L251-L256)\n* Added regression coverage confirming normal-worded escalation and contraindication caveats beyond the compact answer head remain visible. [tests/rag-answer-text.test.tsL27-L42](https://github.com/BigSimmo/Database/blob/e87c446854c5089f16ef0fbda9d69eea59f8bf91/tests/rag-answer-text.test.ts#L27-L42)\n\n**Commit / PR**\n* Committed changes on the current branch with commit `36ed171` (`fix(rag): preserve full safety caveat terms`).\n* Created a PR record titled `fix(rag): preserve full safety caveat terms`.\n\n**Testing**\n* ✅ `npm run test -- tests/rag-answer-text.test.ts --reporter=dot`\n* ✅ `npm run typecheck`\n* ✅ `npx eslint src/components/clinical-dashboard/answer-content.tsx tests/rag-answer-text.test.ts`\n\n [View task →](https://chatgpt.com/s/cd_6a53b9ba85b88191ab1fdcf508cb790f)\n> [!NOTE]\n> Docstrings generation - SKIPPED\n> Skipped regeneration as there are no new commits. Docstrings already generated for this pull request at https://github.com/BigSimmo/Database/pull/521.\n\n\n\n\nRemoved this migration. Live is already fail-closed on all 8 primary RPCs (verified); a byte-perfect codification is owner-driven (needs the DB dump), and a body-less stub would record as applied and block the real fix.\n\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_\nMoot — the migration was removed from this PR. (The dump command lives in the F7 follow-up notes, where the `string_agg(... ORDER BY ...)` form is used.)\n\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_\n`@BigSimmo` Thanks for the context — that's a sound resolution. Since live is already verified fail-closed on all eight primary RPCs, an incomplete migration stub would indeed just create a false \"applied\" state without capturing the exact bodies, effectively blocking a future accurate fix. Removing it until the byte-perfect codification can be done via a real DB connection is the right call.\n\nI'll drop this comment.\n\n\n\n\n

🧩 Analysis chain

\n\n🏁 Script executed:\n\n```shell\n#!/bin/bash\nset -euo pipefail\nrg -n \"normalizePreformattedDisplayText\" -A 20 src/lib/source-text-sanitizer.ts | head -60\nrg -n \"preformatted.*bold|preserveBold\" tests/display-text.test.ts -A 15 -B 5\n```\n\nLength of output: 6659\n\n---\n\n

\n\nConfirmed — the fix is in place: `normalizePreformattedDisplayText` now takes `{ preserveBold }` and strips `**` when it's falsy, `sanitizeAnswerDisplayText` forwards `options.preserveBold` on the preformatted branch, and the new regression test in tests/display-text.test.ts (\"handles bold markers correctly in preformatted answers\") covers exactly the collapsed prior-answer scenario I flagged. Thanks for the quick turnaround, `@BigSimmo`!\n\n(=^..^=)\n\n\n\n---\n\n

🧬 Code Graph Analysis Results

\n\n### `src/components/clinical-dashboard/display-text.ts`\n\n**Lines 16-26**\n```ts\nexport type DisplayTextSanitizeOptions = {\n minLength?: number;\n minTokens?: number;\n compactSource?: boolean;\n // Server-`preformatted` answers (doc-support lists, table/visual references)\n // are display-ready by construction; run only lossless normalization so their\n // document names / facility codes are not deleted as \"source noise\".\n preformatted?: boolean;\n // Keep server high-yield bold (**…**) so can render it.\n preserveBold?: boolean;\n};\n```\n\n**Lines 229-252**\n```ts\nexport function sanitizeAnswerDisplayText(value: string, options: DisplayTextSanitizeOptions = {}) {\n const normalized = (\n options.preformatted\n ? normalizePreformattedDisplayText(value, {\n preserveBold: options.preserveBold,\n })\n : polishClinicalAnswerProse(sourceTextForClinicalProsePreservingBreaks(value), {\n preserveBold: options.preserveBold,\n })\n ).trim();\n if (!normalized) return \"\";\n const artifactStart = normalizeDisplayText(normalized).search(\n /\\{\\s*\"(?:answer|heading|body|grounded|confidence|citations?|answerSections?|citation_chunk_ids|source_chunk_ids|chunk_id|conflictsOrGaps|quoteCards?)\\s*:/i,\n );\n const trimmed =\n artifactStart === -1 ? normalized : artifactStart === 0 ? \"\" : normalized.slice(0, artifactStart).trim();\n if (!trimmed) return \"\";\n const { minLength = 2, minTokens = 1 } = options;\n if (trimmed.length < minLength) return \"\";\n const tokenCount = normalizeDisplayText(trimmed).split(/\\s+/).filter(Boolean).length;\n if (tokenCount < minTokens) return \"\";\n if (!/[A-Za-z]{2,}/.test(trimmed)) return \"\";\n return looksLikeDisplayArtifact(trimmed) ? \"\" : trimmed;\n}\n```\n\n**Lines 281-288**\n```ts\nexport function comparableAnswerText(value: string) {\n return value\n .replace(/\\*\\*/g, \"\")\n .replace(/\\.\\.\\.$/, \"\")\n .toLowerCase()\n .replace(/[^a-z0-9]+/g, \" \")\n .trim();\n}\n```\n\n---\n\n### `src/lib/source-text-sanitizer.ts`\n\n**Lines 314-317**\n```ts\nexport function normalizePreformattedDisplayText(text: string, options: { preserveBold?: boolean } = {}) {\n const normalized = readableWhitespace(text);\n return options.preserveBold ? normalized : normalized.replace(/\\*\\*([^*]+)\\*\\*/g, \"$1\");\n}\n```\n\n---\n\n### `src/lib/rag-answer-text.ts`\n\n**Lines 220-252 (relevant preserveBold behavior summarized)**\n```ts\n/**\n * polishClinicalAnswerProse(value, options)\n * - Params:\n * - value: string\n * - options: { preserveBold?: boolean }\n * - Bold handling:\n * - If options.preserveBold is true: keeps `**...**` during normalization.\n * - Otherwise: strips markdown bold markers via `normalized.replace(/\\*\\*([^*]+)\\*\\*/g, \"$1\")`.\n * - Returns: string (cleaned/normalized clinical prose for display).\n * - Error handling: none (pure string transformations).\n */\n```\n\n

\n\n\n\n\n`@BigSimmo` Understood — thanks for the clarification. Since the migration file was removed from this PR, the ordering issue no longer applies here. Good to know the corrected `string_agg(... ORDER BY ...)` form is captured in the F7 follow-up notes for whenever that migration gets reintroduced.\n\n\n\n",{},"created",1783878999.2543664,"Completing the task","event_type","info",{"_92":630,"_96":93,"_624":2133},{"_92":1053,"_1054":1055},"partial_repo_snapshot","files",[1056,1057,1058,1059],{"_256":1438,"_1061":-5,"_1062":1439,"_1064":-5},{"_256":1408,"_1061":-5,"_1062":1409,"_1064":-5},{"_256":1167,"_1061":-5,"_1062":1168,"_1064":-5},{"_256":1060,"_1061":-5,"_1062":1063,"_1064":-5},"tests/rag-answer-text.test.ts","contents","line_range_contents",[1065],"missing_reason",{"_1066":832,"_1067":1068,"_624":1069,"_1070":59},"line_range_start","line_range_end",152,[1071,1072,1073,1074,1075,1076,1077,1078,1079,396,1080,1081,1082,1083,1084,1085,396,1086,1087,1088,1089,1090,1091,1085,396,1092,1093,1094,1095,1096,1097,1098,1099,1085,396,1100,1101,1102,1103,1104,1085,396,1105,1106,1107,1108,1109,1085,396,1110,1101,1111,1112,1085,396,1113,1114,1115,1108,1116,1085,396,1117,1118,1119,396,1120,396,1121,1122,1108,1123,1124,1125,1126,1127,1085,396,1128,1118,1129,396,1120,396,1121,1122,1108,1130,1085,396,1131,1118,1132,396,1133,396,1134,1135,1136,1085,396,1137,1101,1138,1139,1140,1103,1141,1142,1085,396,1143,1101,1144,1145,1085,396,1146,1147,1148,1149,1150,1151,1108,1085,396,1152,1153,1154,1085,396,1155,1156,1157,1085,396,1158,1101,1159,1160,1085,396,1161,1162,1085,396,1163,1164,1165,1108,1085,1166],"contains_end_of_file","import { describe, expect, it } from \"vitest\";","import {"," hasClinicalAnswerQualityIssue,"," looksLikeJsonArtifact,"," polishClinicalAnswerProse,"," sanitizeAnswerText,"," sanitizeStructuredText,"," splitBalancedWords,","} from \"../src/lib/rag-answer-text\";","describe(\"RAG answer text helpers\", () => {"," it(\"strips bold by default but preserves it under preserveBold\", () => {"," const input = \"Escalate if **ANC below 1.5**.\";"," expect(polishClinicalAnswerProse(input)).not.toContain(\"**\");"," expect(polishClinicalAnswerProse(input, { preserveBold: true })).toContain(\"**ANC below 1.5**\");"," });"," it(\"normalizes a bolded sub-bullet while preserving the bold\", () => {"," const out = polishClinicalAnswerProse(\"Actions: o **Reduce dose** o **Recheck ANC**\", { preserveBold: true });"," expect(out).toContain(\"**Reduce dose**\");"," expect(out).toContain(\"**Recheck ANC**\");"," // The leading \"o\" sub-bullet glyph is normalized away, not left as a literal."," expect(out).not.toMatch(/\\bo\\s+\\*\\*Reduce/);"," it(\"normalizes balanced word tokens for query/source matching\", () => {"," expect(splitBalancedWords(\"Clozapine: red-range blood results!\")).toEqual(["," \"clozapine\","," \"red\","," \"range\","," \"blood\","," \"results\","," ]);"," it(\"detects structured-output fragments as display artifacts\", () => {"," expect("," looksLikeJsonArtifact('{\"answer\":\"Use monitoring\",\"citations\":[{\"chunk_id\":\"chunk-1\"}],\"confidence\":\"high\"}'),"," ).toBe(true);"," expect(looksLikeJsonArtifact(\"Use clozapine monitoring forms during initiation.\")).toBe(false);"," it(\"strips leading schema keys and rejects JSON fragments\", () => {"," expect(sanitizeStructuredText(\"body: Complete the Clozapine Monitoring Form.\", { minTokens: 3 })).toBe("," \"Complete the Clozapine Monitoring Form.\","," );"," expect(sanitizeStructuredText('{\"heading\":\"Monitoring\",\"body\":\"Complete the form\"}', { minTokens: 2 })).toBe(\"\");"," it(\"removes a mid-stream JSON leak after clean prose without leaving a dangling brace\", () => {"," sanitizeStructuredText('Withhold clozapine when ANC is low. {\"answer\": \"ignore me\"}', { minTokens: 3 }),"," ).toBe(\"Withhold clozapine when ANC is low.\");"," it(\"keeps clinically useful answer text with the stricter answer threshold\", () => {"," expect(sanitizeAnswerText(\"Complete baseline monitoring before clozapine initiation.\")).toBe("," \"Complete baseline monitoring before clozapine initiation.\","," expect(sanitizeAnswerText(\"OK\")).toBe(\"\");"," it(\"removes product catalogue, all-caps headings, and citation suffixes from answer prose\", () => {"," const noisy ="," \"Lithium Carbonate 250 mg Tablet – Lithicarb®. Lithium Carbonate 450 mg Modified Release Tablet – Quilonum SR® Imprest location: Formulary One DOSAGE & DOSAGE ADJUSTMENTS Therapy with lithium should always begin with conventional tablets (Lithium Carbonate 250 mg) to stabilise the do. Lithium MONITORING Baseline Tests1.\";"," const cleaned = sanitizeAnswerText(noisy);"," expect(cleaned).toBe("," \"Therapy with lithium should always begin with conventional tablets (lithium carbonate 250 mg).\","," expect(cleaned).not.toContain(\"Lithicarb\");"," expect(cleaned).not.toContain(\"Quilonum\");"," expect(cleaned).not.toContain(\"DOSAGE\");"," expect(cleaned).not.toContain(\"MONITORING\");"," expect(cleaned).not.toContain(\"Tests1\");"," it(\"removes markdown-heavy catalogue fragments before preserving useful clinical prose\", () => {"," \"Dose evidence: **Lithium** Carbonate **250 mg** Tablet - Lithicarb®. Dose evidence: **Lithium** Carbonate **450 mg** Modified Release Tablet - Quilonum SR® Imprest location: Formulary One DOSAGE & DOSAGE ADJUSTMENTS Therapy with **lithium** should always begin with conventional tablets (**lithium** carbonate **250 mg**) to stabilise the do. Dose evidence: **Lithium** MONITORING Baseline Tests1.\";"," expect(cleaned).not.toMatch(/Lithicarb|Quilonum|Imprest|DOSAGE|Dose evidence|Tests1/i);"," it(\"strips bolded catalogue noise when preserveBold keeps clinical emphasis\", () => {"," \"Dose evidence: **Lithium** Carbonate **250 mg** Tablet - Lithicarb®. Therapy with **lithium** should always begin with conventional tablets (**lithium** carbonate **250 mg**).\";"," const cleaned = polishClinicalAnswerProse(noisy, { preserveBold: true });"," expect(cleaned).toContain(\"Therapy with **lithium**\");"," expect(cleaned).toContain(\"**250 mg**\");"," expect(cleaned).not.toMatch(/Lithicarb|Dose evidence/i);"," it(\"flags source-inventory wording and truncated clinical fragments as answer quality issues\", () => {"," hasClinicalAnswerQualityIssue("," \"The indexed source passages matched the question, but no concise source sentence could be extracted.\","," ),"," expect(hasClinicalAnswerQualityIssue(\"Liver functi should be checked before treatment.\")).toBe(true);"," expect(hasClinicalAnswerQualityIssue(\"Monitor for respiratio before discharge.\")).toBe(true);"," it(\"polishes cached answer display text without requiring regeneration\", () => {"," polishClinicalAnswerProse(\"Serum lithium concentrations should be monitored once every three months.1\"),"," ).toBe(\"Serum lithium concentrations should be monitored once every three months.\");"," it(\"removes answer footnote markers without damaging clinical numbers and scales\", () => {"," expect(sanitizeAnswerText(\"Monitor FBC [1] and ANC (2).\")).toBe(\"Monitor FBC and ANC.\");"," expect(sanitizeAnswerText(\"Check ANC1 and FBC2 before clozapine.\")).toBe(\"Check ANC and FBC before clozapine.\");"," expect(sanitizeAnswerText(\"Vitamin B12 should be checked.\")).toBe(\"Vitamin B12 should be checked.\");"," expect(sanitizeAnswerText(\"Use PHQ-9 score, not HAM-D17, for this check.\")).toBe("," \"Use PHQ-9 score, not HAM-D17, for this check.\","," it(\"flags citation-marker residue as an answer quality issue\", () => {"," expect(hasClinicalAnswerQualityIssue(\"Monitor FBC [1] and ANC (2).\")).toBe(true);"," expect(hasClinicalAnswerQualityIssue(\"Check ANC1 and FBC2 before clozapine.\")).toBe(true);"," it(\"treats source form codes as quality issues while preserving clinical scales\", () => {"," expect(hasClinicalAnswerQualityIssue(\"Complete the Consent to Clozapine Treatment Form EMR0270.\")).toBe(true);"," expect(hasClinicalAnswerQualityIssue(\"Use PHQ-9 score, not HAM-D17, for this check.\")).toBe(false);"," it(\"converts bullet glyphs and the sub-bullet 'o' into readable separators in answer prose\", () => {"," sanitizeAnswerText(\"Check levels weekly • Avoid concurrent nephrotoxins o Reduce dose in renal impairment\"),"," ).toBe(\"Check levels weekly; Avoid concurrent nephrotoxins; Reduce dose in renal impairment\");"," it(\"keeps a temperature-style ' o ' glyph untouched in answer prose\", () => {"," expect(sanitizeAnswerText(\"Store the solution below 37 o C at all times\")).toContain(\"37 o C\");"," it(\"converts a sub-bullet whose item is bold-emphasized\", () => {"," expect(sanitizeAnswerText(\"Check levels weekly o **Reduce dose in renal impairment**\")).toBe("," \"Check levels weekly; Reduce dose in renal impairment\",","});","src/lib/rag-answer-text.ts",[1169],{"_1066":832,"_1067":1170,"_624":1171,"_1070":59},313,[1072,1172,1173,1174,1175,1176,396,1177,1178,1179,1180,1181,1182,1183,1184,1185,1186,1187,1188,1189,1190,1191,1192,1193,1194,1195,1196,1197,1198,1199,1200,1201,1202,1203,1204,1205,1206,1207,1208,1209,1210,1211,1212,1213,1214,396,1215,1216,1217,396,1218,1219,1220,1221,1222,1223,1224,1217,396,1225,1226,1227,1228,1229,1230,1231,1232,1233,1234,1235,1236,1237,1238,1239,1240,1241,1108,396,1242,1243,1244,396,1245,1246,1247,1248,1249,1250,1251,1252,1253,1243,1244,396,1245,1254,1255,1251,1256,1257,1253,1243,1244,396,1258,1245,1259,1246,1260,1261,1253,1243,1244,396,1262,1217,396,1263,1264,1265,1266,1267,1268,1269,396,1270,1271,1272,1273,1274,1275,1276,1277,1278,1279,1280,1281,1282,1283,1284,396,1285,1286,1287,1288,1289,1290,1291,1292,1293,1294,1217,396,1295,1296,1297,1298,1244,1299,1217,396,1300,1301,1217,396,1302,1303,1304,1305,1306,1307,1308,1309,1310,1311,1312,1217,396,1313,1303,1304,1305,1306,1307,1308,1314,1315,1316,1317,1318,1310,1311,1312,1217,396,1319,1320,1321,1322,1323,1324,1325,1326,1327,1328,1329,1330,1331,1332,1217,396,1323,1333,1325,1334,1335,1336,1337,1328,1338,1219,1339,1340,1341,1342,1343,1344,1345,1346,1347,1348,1349,1350,1351,1352,1353,1354,1217,396,1355,1356,1357,1358,1359,1360,1244,1361,1217,396,1362,1363,1364,1365,1366,1367,1368,1369,1226,1370,1371,1372,1373,1374,1375,1376,1377,396,1378,1379,1373,396,1380,1217,396,1381,1382,1383,1217,396,1384,1226,1227,1385,1386,1387,1388,1389,1390,1391,1392,1393,1394,1395,1396,1397,1398,1399,1400,1373,1217,396,1401,1402,1217,396,1403,1404,1217,396,1405,1406,1407,1217]," clinicalProseUsefulness,"," isLowYieldClinicalText,"," normalizeInlineBulletGlyphs,"," sourceTextForClinicalProse,","} from \"@/lib/source-text-sanitizer\";","const likelyFragmentPhrases ="," /\\b(?:answer|heading|body|grounded|confidence|citations?|answerSections?|citation_chunk_ids|conflictsOrGaps|quoteCards?|source_chunk_ids|chunk_id)\\b/i;","const answerSectionArtifactPattern ="," /\"?(answer|heading|body|grounded|confidence|citations?|answerSections?|citation_chunk_ids|conflictsOrGaps|quoteCards?|source_chunk_ids|chunk_id)\"?\\s*:\\s*/i;","// Mid-text truncation must only fire on a genuine leaked JSON key — i.e. a","// double-quoted key followed by a colon (\"confidence\":). A bare English word +","// colon (\"...document the confidence: high...\") is legitimate clinical prose and","// must NOT cause the rest of the answer/section to be sliced away.","const leakedJsonKeyPattern ="," /\"(answer|heading|body|grounded|confidence|citations?|answerSections?|citation_chunk_ids|conflictsOrGaps|quoteCards?|source_chunk_ids|chunk_id)\"\\s*:/i;","const productCatalogueFragmentPattern ="," /\\b[A-Z][A-Za-z ]+\\s+\\d+\\s*mg\\b[^.?!]*?\\b(?:tablet|capsule|solution|modified release|enteric-coated)\\b[^.?!]*?[®™]\\s*/gi;","const brandOrFormularyFragmentPattern ="," /\\b(?:Lithicarb|Quilonum\\s+SR|Campral)[®™]?|\\b(?:imprest|formulary)\\s+(?:location|one)\\b.*?(?=\\b(?:therapy|treatment|start|commence|begin|check|monitor|baseline|dose|dosing)\\b|[.?!]|$)/gi;","const imprestLocationPattern ="," /\\bimprest\\s+location\\s*:\\s*.*?(?=\\b(?:therapy|treatment|start|commence|begin|check|monitor|baseline|dose|dosing)\\b|$)/gi;","const allCapsSourceHeadingPattern = /\\b(?=[A-Z0-9/&,+() -]*\\s[A-Z0-9])[A-Z][A-Z0-9/&,+() -]{8,}\\b/g;","const sourceFormCodePattern = /\\b[A-Z]{2,8}\\d{3,}(?:\\/\\d+)?\\b/g;","const bracketedCitationMarkerPattern ="," /\\s*(?:\\[\\s*\\d+(?:\\s*[-,]\\s*\\d+)*\\s*\\]|\$\\s*\\d+(?:\\s*[-,]\\s*\\d+)*\\s*\$)(?=\\.?(?:\\s|$))/g;","const trailingCitationDigitPattern = /(?<=[a-z)])\\d+(?=\\.?(?:\\s|$))/g;","const clinicalAbbreviationCitationDigitPattern ="," /\\b(ANC|FBC|WBC|ECG|EEG|LFTs?|UEC|U&E|QTc|BMI|BP|HR|RR|CRP|ESR|TSH|HbA1c)\\d+(?=\\.?(?:\\s|$))/gi;","const orphanSourceHeadingPattern ="," /^(?:lithium\\s+)?(?:monitoring|baseline tests?|dose|dosage|dosage adjustments?|therapy|source|table|section)$/i;","const sourceInventoryWordingPattern ="," /\\b(?:the\\s+(?:strongest\\s+)?retrieved\\s+(?:source|sources|passages|excerpts)\\s+(?:support|supports|show|shows|indicate|indicates)|retrieved\\s+(?:source|sources|passages|excerpts)|indexed\\s+source\\s+passages\\s+matched|no\\s+concise\\s+source\\s+sentence|source-backed|based\\s+on\\s+(?:the\\s+)?(?:provided\\s+)?(?:sources|excerpts|passages|retrieved\\s+sources)|dose evidence|monitoring evidence|table evidence|direct source-backed answer)\\b/i;","const clippedClinicalFragmentPattern ="," /\\b(?:stabili[sz]e\\s+the\\s+do|the\\s+do\\b|liver\\s+functi\\b|respiratio\\b|if\\s+a\\s+60%\\s+decrease\\s+in\\s+b\\b)\\b/i;","const genericMedicationCasePatterns: Array<[RegExp, string]> = ["," [/\\bLithium Carbonate\\b/g, \"lithium carbonate\"],"," [/\\bClozapine\\b/g, \"clozapine\"],"," [/\\bAcamprosate\\b/g, \"acamprosate\"],"," [/\\bSertraline\\b/g, \"sertraline\"],"," [/\\bNaltrexone\\b/g, \"naltrexone\"],"," [/\\bDisulfiram\\b/g, \"disulfiram\"],"," [/\\bBaclofen\\b/g, \"baclofen\"],","];","export function normalizeSectionText(value: string) {"," return value.trim().replace(/\\s+/g, \" \");","}","export function splitBalancedWords(text: string) {"," return text"," .toLowerCase()"," .replace(/[^a-z0-9]+/g, \" \")"," .trim()"," .split(/\\s+/)"," .filter(Boolean);","export function looksLikeJsonArtifact(value: string) {"," const normalized = normalizeSectionText(value);"," if (!normalized) return true;"," const tokenCount = normalized.split(/\\s+/).filter(Boolean).length;"," const hasJsonStructure = /[{}\\[\\]]/.test(normalized);"," const quoteCount = (normalized.match(/\"/g) ?? []).length;"," const colonCount = (normalized.match(/:/g) ?? []).length;"," const keyValuePairs = (normalized.match(/\"[^\"]+\"\\s*:\\s*/g) ?? []).length;"," const keyPairDensity = tokenCount > 0 ? keyValuePairs / tokenCount : 0;"," const hasKnownKeys = likelyFragmentPhrases.test(normalized);"," const hasBalancedBraces = (normalized.match(/[{}\\[\\]]/g) ?? []).length >= 2;"," const hasBalancedBrackets = (normalized.match(/[\\[\\]]/g) ?? []).length >= 2;"," const tokenDensity = splitBalancedWords(normalized);"," const isMostlyPunctuationNoise = tokenDensity.length >= 6 && tokenDensity.every((word) => word.length <= 2);"," const hasBracketKeyPairs ="," /\"\\s*(?:answer|heading|body|grounded|confidence|citation_chunk_ids|conflictsOrGaps|quoteCards?|source_chunk_ids|chunk_id)\\s*\"/i.test("," normalized,"," if (normalized.startsWith(\"{\") && normalized.endsWith(\"}\") && (hasKnownKeys || quoteCount >= 4)) {"," return true;"," }"," if ("," hasJsonStructure &&"," hasBalancedBraces &&"," keyValuePairs >= 2 &&"," quoteCount >= 4 &&"," colonCount >= 2 &&"," hasKnownKeys &&"," (tokenCount <= 70 || keyPairDensity > 0.2)"," ) {"," normalized.includes(\"}\") &&"," normalized.includes(\"{\") &&"," /\"[^\"]+\":\\s*\"/.test(normalized) &&"," tokenCount <= 40"," if (isMostlyPunctuationNoise) return true;"," hasBracketKeyPairs &&"," (quoteCount >= 2 || colonCount >= 2 || hasBalancedBrackets) &&"," tokenCount <= 70"," return false;","export function sanitizeStructuredText("," value: string,"," options: { minLength?: number; minTokens?: number; keepLeading?: boolean } = {},",") {"," const { minLength = 2, minTokens = 1, keepLeading = false } = options;"," const normalized = normalizeSectionText(sourceTextForClinicalProse(value));"," if (!normalized) return \"\";"," // A leaked key at the very start is stripped (lenient: it is clearly an"," // artifact prefix). Mid-text, only truncate at a genuine quoted JSON key so we"," // never cut real prose at an ordinary word like \"confidence:\" or \"body:\"."," const leakedKeyIndex = normalized.search(leakedJsonKeyPattern);"," const trimmed ="," normalized.search(answerSectionArtifactPattern) === 0"," ? normalized.replace(answerSectionArtifactPattern, \"\").trim()"," : leakedKeyIndex > 0"," ? // Slice off the leaked JSON tail and also drop any opening brace/bracket"," // left dangling just before it (e.g. \"...daily. {\" -> \"...daily.\")."," normalized"," .slice(0, leakedKeyIndex)"," .replace(/[\\s{[]+$/, \"\")"," .trim()"," : normalized;"," const finalText = keepLeading ? trimmed : trimmed.trim();"," if (!finalText) return \"\";"," if (finalText.length < minLength) return \"\";"," if (looksLikeJsonArtifact(finalText)) return \"\";"," const tokenCount = finalText.split(/\\s+/).filter(Boolean).length;"," if (tokenCount < minTokens) return \"\";"," if (!/[A-Za-z]{2,}/.test(finalText)) return \"\";"," const usefulness = clinicalProseUsefulness(finalText);"," if (!usefulness.useful && isLowYieldClinicalText(finalText)) return \"\";"," return usefulness.text || finalText;","function normalizeGenericMedicationCase(value: string) {"," let normalized = value;"," for (const [pattern, replacement] of genericMedicationCasePatterns) {"," normalized = normalized.replace(pattern, replacement);"," return normalized;","function answerSentenceFragments(value: string) {"," return value.match(/(?:\\d+\\.\\d+|[^.!?])+[.!?]?/g) ?? [value];","function removeOrphanAnswerHeadings(value: string) {"," const fragments = answerSentenceFragments(value);"," return fragments"," .map((fragment) => normalizeSectionText(fragment))"," .filter((fragment) => {"," const normalized = fragment.replace(/[.!?]+$/, \"\").trim();"," if (!normalized) return false;"," if (orphanSourceHeadingPattern.test(normalized)) return false;"," return true;"," })"," .join(\" \");","function removeBadAnswerFragments(value: string) {"," if (sourceInventoryWordingPattern.test(normalized)) return false;"," if (clippedClinicalFragmentPattern.test(normalized)) return false;"," brandOrFormularyFragmentPattern.lastIndex = 0;"," if (brandOrFormularyFragmentPattern.test(normalized)) return false;"," if (/\\btable\\s+\\d+\\b/i.test(normalized) && normalized.length > 180) return false;","// Dense monitoring tables are sometimes flattened into run-ons where an inpatient schedule is","// immediately followed by a community schedule with no sentence break (e.g. \"...monitored daily","// for inpatients for community patients weekly...\"). The synthesis prompt handles most of these,","// but this is a narrow deterministic safety-net for the clearest recurring pattern. It also","/**"," * Separates flattened inpatient and community patient schedule phrases into distinct sentences."," *"," * @param value - Clinical prose containing a setting-related run-on phrase"," * @returns The prose with the targeted setting run-on replaced by separate sentences"," */","function separateSettingRunOns(value: string): string {"," return value"," .replace(/\\bfor inpatients,?\\s+for community patients,?/gi, \"for inpatients. For community patients,\")"," .replace(/\\bfor community patients,?\\s+for inpatients,?/gi, \"for community patients. For inpatients,\");"," * Cleans clinical answer text by removing artifacts, normalizing formatting, and improving readability."," * @param value - The clinical answer text to polish"," * @param options - Formatting options"," * @param options.preserveBold - Whether to preserve inline bold markers"," * @returns The polished clinical answer text","function stripAnswerArtifactNoise(text: string) {"," .replace(productCatalogueFragmentPattern, \" \")"," .replace(brandOrFormularyFragmentPattern, \" \")"," .replace(imprestLocationPattern, \" \")"," .replace(allCapsSourceHeadingPattern, \" \")"," .replace(sourceFormCodePattern, \" \")"," .replace(/\\b(?:dose evidence|monitoring evidence|table evidence|source point)\\s*:\\s*/gi, \" \")"," .replace(/\\s+to\\s+stabili[sz]e\\s+the\\s+do\\b\\.?/gi, \".\")"," .replace(/\\b(?:liver functi|respiratio)\\b[^.?!]*[.?!]?/gi, \" \")"," .replace(bracketedCitationMarkerPattern, \"\")"," .replace(clinicalAbbreviationCitationDigitPattern, \"$1\")"," .replace(/(?<=[a-z)])\\s*\\.\\s*\\d+(?=\\.?(?:\\s|$))/g, \".\")"," .replace(trailingCitationDigitPattern, \"\")"," .replace(/\\s+([,.;:])/g, \"$1\")"," .replace(/(?:\\.\\s*){2,}/g, \". \")"," .replace(/\\s+/g, \" \")"," .trim();","function restoreBoldSpans(text: string, boldSpans: string[]) {"," let restored = text;"," for (const span of boldSpans) {"," if (restored.includes(span) && !restored.includes(`**${span}**`)) {"," restored = restored.replace(span, `**${span}**`);"," }"," return restored;","export function polishClinicalAnswerProse(value: string, options: { preserveBold?: boolean } = {}) {"," // Bold markers normally come off before bullet normalization so an emphasized"," // item (\"o **Reduce dose**\") still reads as a sub-bullet to the \"o\" matcher."," // The display path passes preserveBold so can render the"," // server's high-yield emphasis (and the un-bold unverified-number safety"," // signal); the sub-bullet matcher tolerates a leading \"**\" so bolded"," // sub-bullets still normalize. The server answer-gen path keeps the default"," // (strip), so its quality gates are unchanged."," const boldSpans = [...normalized.matchAll(/\\*\\*([^*]+)\\*\\*/g)].map((match) => match[1]);"," const bulletNormalized = normalizeInlineBulletGlyphs("," options.preserveBold ? normalized : normalized.replace(/\\*\\*([^*]+)\\*\\*/g, \"$1\"),"," );"," // Artifact regexes were written for unbolded catalogue/source noise; run"," // them on a de-bolded copy so preserveBold still strips Lithicarb-style junk."," const deBolded = bulletNormalized.replace(/\\*\\*([^*]+)\\*\\*/g, \"$1\");"," const cleaned = stripAnswerArtifactNoise(deBolded);"," const polished = normalizeGenericMedicationCase("," separateSettingRunOns(removeOrphanAnswerHeadings(removeBadAnswerFragments(cleaned))),"," return options.preserveBold ? restoreBoldSpans(polished, boldSpans) : polished;","export function sanitizeAnswerText(value: string) {"," const cleaned = sanitizeStructuredText(value, { minLength: 8, minTokens: 2, keepLeading: true });"," return cleaned ? polishClinicalAnswerProse(cleaned) : \"\";","export function hasClinicalAnswerQualityIssue(value: string) {"," productCatalogueFragmentPattern.lastIndex = 0;"," brandOrFormularyFragmentPattern.lastIndex = 0;"," allCapsSourceHeadingPattern.lastIndex = 0;"," sourceFormCodePattern.lastIndex = 0;"," bracketedCitationMarkerPattern.lastIndex = 0;"," clinicalAbbreviationCitationDigitPattern.lastIndex = 0;"," return ("," sourceInventoryWordingPattern.test(normalized) ||"," clippedClinicalFragmentPattern.test(normalized) ||"," productCatalogueFragmentPattern.test(normalized) ||"," brandOrFormularyFragmentPattern.test(normalized) ||"," allCapsSourceHeadingPattern.test(normalized) ||"," sourceFormCodePattern.test(normalized) ||"," bracketedCitationMarkerPattern.test(normalized) ||"," clinicalAbbreviationCitationDigitPattern.test(normalized) ||"," /(?<=[a-z)])\\d+(?=\\.?(?:\\s|$))/.test(normalized)","export function isUsableAnswerSectionText(value: string, options: { minTokens?: number; minLength?: number } = {}) {"," return Boolean(sanitizeStructuredText(value, options));","export function safeRecord(value: unknown) {"," return value && typeof value === \"object\" && !Array.isArray(value) ? (value as Record) : {};","export function metadataText(metadata: Record, key: string) {"," const value = metadata[key];"," return typeof value === \"string\" && value.trim() ? value.trim() : null;","tests/answer-content.test.ts",[1410],{"_1066":832,"_1067":1411,"_624":1412,"_1070":59},43,[1071,1413,396,1414,1415,1416,396,1417,1085,396,1418,1419,1420,1421,1422,1423,1085,396,1424,1425,1426,1421,1427,1428,1085,396,1429,1421,1430,1431,1085,396,1432,1421,1433,1434,1085,396,1435,1436,1437,1085,1166],"import { primaryAnswerDisplayText } from \"../src/components/clinical-dashboard/answer-content\";","describe(\"primaryAnswerDisplayText\", () => {"," it(\"keeps a safety cue in a long leading fragment beyond the compact word budget\", () => {"," const lead = `${Array.from({ length: 90 }, (_, index) => `detail${index + 1}`).join(\" \")} Do not administer the medicine.`;"," expect(primaryAnswerDisplayText(lead)).toContain(\"Do not administer the medicine.\");"," it(\"keeps a full-word escalation caveat that appears beyond the compact head\", () => {"," // A bare `escalat\\b` stem never matched \"Escalate\", so this caveat (the"," // fourth fragment) was silently dropped before the fix."," const answer ="," \"Give paracetamol for ongoing pain. Review the observations hourly overnight. Document the management plan clearly in the notes. Escalate to the senior doctor if the patient deteriorates.\";"," expect(primaryAnswerDisplayText(answer)).toContain(\"Escalate to the senior doctor\");"," it(\"keeps a short contraindication caveat under the 8-word usefulness floor\", () => {"," // \"Contraindicated in pregnancy and severe renal impairment\" is 7 words, so"," // the usefulness/length filter dropped it before the safety-aware exception."," \"Offer oral rehydration first. Reassess fluid balance after two hours. Record the intake and output totals. Contraindicated in pregnancy and severe renal impairment.\";"," expect(primaryAnswerDisplayText(answer)).toContain(\"Contraindicated in pregnancy\");"," it(\"keeps a short stop instruction after normal leading prose\", () => {"," \"Give paracetamol for ongoing pain. Review the observations hourly overnight. Document the management plan clearly in the notes. Stop lithium.\";"," expect(primaryAnswerDisplayText(answer)).toContain(\"Stop lithium.\");"," it(\"keeps a passive held caveat beyond the compact head\", () => {"," \"Give paracetamol for ongoing pain. Review the observations hourly overnight. Document the management plan clearly in the notes. Clozapine should be held.\";"," expect(primaryAnswerDisplayText(answer)).toContain(\"should be held\");"," it(\"is unchanged for a short answer with no safety signal\", () => {"," const answer = \"Offer simple analgesia and reassess in one hour.\";"," expect(primaryAnswerDisplayText(answer)).toBe(answer);","src/components/clinical-dashboard/answer-content.tsx",[1440],{"_1066":832,"_1067":1441,"_624":1442,"_1070":59},898,[1443,396,1444,396,1445,1446,1072,1447,1448,1449,1450,1451,1452,1453,1454,1455,1456,396,1457,1458,1072,1459,1460,1461,1462,1463,1464,1465,1466,1467,1468,1469,1470,1471,1072,1472,1473,1474,1475,1476,1477,1478,1479,1480,1072,1481,1482,1483,1484,1485,1486,1487,1488,1489,1490,1491,1492,1493,1494,396,1495,1496,1497,1498,1499,1500,1501,1502,1503,1504,1505,1506,1507,1508,396,1509,1510,1511,396,1512,1513,1514,1515,1516,1517,1518,1519,1520,1521,1522,1523,1524,1525,1517,1526,1527,1528,1529,1530,1531,1532,396,1533,1534,1535,1536,1537,1538,1244,396,1539,1534,1537,1540,1244,396,1541,1542,1543,1544,1545,1546,1547,1548,1549,1550,1551,1552,1553,1554,1555,1556,1557,1558,1559,1560,1108,1244,396,1561,1562,1563,1564,1391,1565,1566,1567,1568,1569,1570,1571,1572,1573,1574,1575,1576,1577,1578,1579,1580,1581,1582,1583,1584,1585,1586,1587,1588,1559,1584,1589,1373,1166,396,1323,1590,1325,1591,1592,1328,1593,1594,1595,1499,1596,1597,1503,1598,1599,1600,1601,1602,1603,1391,1604,1605,1606,1607,1608,1609,1584,1610,1611,1612,1613,1614,1615,1584,1616,1611,1617,1618,1619,1620,1621,1622,1623,1624,1625,1626,1614,1615,1584,1589,1373,1217,396,1627,1628,1629,1630,1631,1632,1633,1634,396,1635,1636,1637,1638,1639,396,1323,1640,1325,1641,1642,1643,1328,1644,1645,1646,1647,1648,1649,1650,1651,1652,1653,1654,1354,1217,396,1323,1655,1325,1656,1657,1658,1328,1659,1660,1661,1662,1663,1664,1665,1666,1667,1649,1650,1668,1652,1653,1654,1354,1669,1670,1671,1672,1673,1674,1675,1676,1677,1678,1679,1680,1681,1673,1682,1683,1684,1674,1685,1673,1686,1687,1688,1689,1690,1691,1692,1693,1694,1695,1696,1697,1698,1699,1360,1700,1701,1702,1703,1698,1704,1705,1706,1707,1708,1709,1710,1711,1712,1360,1244,1713,1217,396,1714,1715,1716,1717,1718,1719,1720,1721,1722,1217,396,1723,1724,1725,1726,1727,1217,396,1728,1729,1730,1731,1732,1733,1734,1735,1736,1737,1634,396,1738,1739,1217,396,1740,1741,1742,1244,1743,1744,1244,1745,1217,396,1746,1747,1748,1749,1750,1751,1217,396,1752,1753,1754,1755,1756,1217,396,1757,1758,1759,1760,1217,396,1761,1762,1763,1764,1266,1765,1766,1767,1768,1769,1770,1771,1772,396,1773,1774,1775,1776,1777,1778,1779,1780,1781,1782,1691,1085,396,1783,1774,1784,1785,1786,1787,1788,1789,1790,1691,1244,396,1791,1774,1792,1776,1777,1793,1794,1795,1796,1691,1085,396,1797,1217,396,1798,1799,1800,1801,1802,1803,1499,1804,1805,1806,1807,1808,1503,1809,1810,1811,1373,396,1391,1812,1813,1814,1815,1816,1817,1818,1819,1820,1821,1822,1823,1559,1584,1543,1824,1825,1826,1548,1827,1828,1829,1830,1831,1832,1833,1834,1835,1556,1836,1837,1838,1839,1840,1841,1842,1843,1844,1845,1846,1847,1848,1849,1850,1851,1820,1852,1853,1854,1855,1856,1857,1858,1859,1860,1861,1862,1863,1864,1865,1866,1867,1868,1869,1870,1871,1872,1873,1874,1875,1820,1876,1877,1846,1878,1879,1880,1881,1849,1882,1850,1883,1884,1885,1821,1823,1886,1560,1887,1888,1889,1890,1584,1891,1892,1893,1894,1895,1896,1556,1897,1898,1899,1900,1901,1902,1903,1904,1558,1900,1560,1905,1906,1579,1907,1908,1582,1909,1910,1911,1912,1913,1914,1892,1893,1894,1915,1556,1916,1897,1899,1900,1560,1917,1373,1217,396,1323,1918,1325,1919,1920,1921,1922,1923,1924,1925,1926,1927,1928,1328,1929,1930,1931,1932,1933,1934,1935,1936,1937,1938,1499,1939,1940,1941,1631,1942,1943,1944,1945,1946,1947,1948,1503,1949,1950,1951,1952,1953,1954,1509,1529,1955,1531,1956,1957,1958,1959,1960,1961,1962,1963,1964,1965,1966,1967,1955,1968,1969,1970,1360,1244,1971,1972,1973,1974,1975,1976,1977,1978,1979,1980,1570,1981,1982,1983,1984,1985,1986,1987,1988,1583,1584,1989,1373,396,1391,1990,1991,1992,1993,1570,1994,1995,1996,1997,1548,1998,1999,2000,2001,2002,2003,2004,1609,2005,2006,2007,2008,2009,2010,2011,2012,2013,2014,2015,2016,2017,2018,2019,2020,2021,1850,2022,2023,2024,2025,2026,2027,2028,2029,2030,2031,2032,2033,2034,2035,2036,1858,2037,2038,2039,2040,2041,2042,1625,2043,2044,2045,1559,2046,2047,2048,2049,2050,1556,2051,2052,2053,2054,2055,2056,2057,1900,2058,2059,2060,2061,2062,2063,2064,2065,2066,2067,2068,2069,2070,2071,1909,2072,2051,2052,2053,2054,2055,2073,2056,1823,2074,2075,1552,1553,2076,1895,2077,1556,1903,2078,1558,1559,1560,2079,1373,1217,396,2080,2081,1958,396,1391,2082,1543,2083,2084,1548,2085,1560,2079,1373,1217,396,2086,1729,2087,2088,1634,396,2089,2090,2091,2092,2093,2094,2095,2096,2097,1217,396,2098,2099,2100,2101,2102,2103,2104,2105,2106,2107,2108,2109,2110,2111,2112,2113,2114,2115,2116,1673,2117,2118,1217,396,2119,2120,2121,396,2122,2123,2124,2125,2126,2127,2128,2129,2130,2131,1311,2132,2118,1217],"\"use client\";","/* eslint-disable @next/next/no-img-element */","import Link from \"next/link\";","import { memo, useEffect, useRef, useState } from \"react\";"," AlertCircle,"," CheckCircle2,"," ChevronDown,"," Copy,"," ExternalLink,"," Layers,"," Loader2,"," ShieldCheck,"," Sparkles,","} from \"lucide-react\";","import { SafeBoldText } from \"@/components/SafeBoldText\";","import { Sheet } from \"@/components/ui/sheet\";"," chatActionRow,"," chatAnswerText,"," chatMicroAction,"," cn,"," sourceCapsule,"," sourceCapsuleCountBadge,"," statusDotMuted,"," statusDotReady,"," statusDotReview,"," subtleStatusPill,"," textMuted,","} from \"@/components/ui-primitives\";","import { sourceResultHref } from \"@/components/clinical-dashboard/source-actions\";"," cleanDisplayTitle,"," comparableAnswerText,"," sanitizeAnswerDisplayText,","} from \"@/components/clinical-dashboard/display-text\";","import { useMobilePreviewSheet } from \"@/components/clinical-dashboard/use-mobile-preview-sheet\";","import { SourcePreviewPopover } from \"@/components/clinical-dashboard/source-preview-popover\";","import { clearCachedSignedUrl, getCachedSignedUrl, setCachedSignedUrl } from \"@/lib/signed-url-cache\";","import { normalizeSourceMetadata, sourceStatusLabel } from \"@/lib/source-metadata\";","import { clinicalProseUsefulness } from \"@/lib/source-text-sanitizer\";"," frontendSourceGovernanceWarnings,"," groupSourceGovernanceWarnings,"," type SourceGovernanceWarning,","} from \"@/lib/source-governance\";","import { type SourceLink } from \"@/lib/answer-render-policy\";","import { useAuthSession } from \"@/lib/supabase/client\";","import type {"," AnswerSection,"," AnswerSectionKind,"," BestSourceRecommendation,"," SearchResult,"," SearchScopeSummary,"," VisualEvidenceCard,","} from \"@/lib/types\";","export const SourceImage = memo(function SourceImage({"," endpoint,"," caption,"," className = \"max-h-52\",","}: {"," endpoint: string;"," caption: string;"," className?: string;","}) {"," const [url, setUrl] = useState(() => getCachedSignedUrl(endpoint)?.url ?? null);"," const [failed, setFailed] = useState(false);"," const [attempt, setAttempt] = useState(0);"," const [loaded, setLoaded] = useState(false);"," const { authorizationHeader, markSessionExpired } = useAuthSession();"," useEffect(() => {"," const cached = getCachedSignedUrl(endpoint);"," if (cached) return () => undefined;"," let active = true;"," fetch(endpoint, { headers: authorizationHeader })"," .then((response) => {"," if (response.status === 401) markSessionExpired();"," return response.ok ? response.json() : null;"," })"," .then((data) => {"," if (active && data?.url) {"," setCachedSignedUrl(endpoint, data);"," setUrl(data.url);"," setFailed(false);"," } else if (active) {"," setFailed(true);"," }"," .catch(() => {"," if (active) setFailed(true);"," });"," return () => {"," active = false;"," };"," }, [attempt, authorizationHeader, endpoint, markSessionExpired]);"," function retryImage() {"," clearCachedSignedUrl(endpoint);"," setUrl(null);"," setFailed(false);"," setLoaded(false);"," setAttempt((current) => current + 1);"," function handleImageError() {"," setFailed(true);"," if (failed) {"," return ("," ","

"," "," Image preview could not load."," "," Retry image"," ","

"," "," // A fixed-aspect frame reserves the image's box up front so the loaded image"," // never resizes the layout (the placeholder and the image share one box). The"," // image object-contains within it and fades in on decode, so nothing below"," // shifts when it arrives."," "," {url ? ("," setLoaded(true)}"," onError={handleImageError}"," className={cn("," \"absolute inset-0 h-full w-full rounded-lg object-contain transition-opacity duration-300 motion-reduce:transition-none\","," loaded ? \"opacity-100\" : \"opacity-0\","," )}"," />"," ) : null}"," {!url || !loaded ? (","

"," "," Loading image","

"," * Displays the active search scope and source governance warnings."," * @param scope - The current search scope summary, or `null` when unavailable"," * @param warnings - Source governance warnings to display","export function ScopeAndGovernanceNotice({"," scope,"," warnings,"," scope: SearchScopeSummary | null;"," warnings: SourceGovernanceWarning[];"," const groupedWarnings = groupSourceGovernanceWarnings(frontendSourceGovernanceWarnings(warnings)).slice(0, 4);"," const showScope ="," Boolean(scope && scope.activeFilterCount > 0) ||"," Boolean(scope?.warnings?.length) ||"," scope?.matchedDocumentCount === 0;"," if (!showScope && groupedWarnings.length === 0) return null;","

"," {showScope && scope ? (","

"," Scope: {scope.summary}"," {scope.queryMode && scope.queryMode !== \"auto\" ? ` · ${scope.queryMode.replaceAll(\"_\", \" \")}` : \"\"}","

"," {scope?.warnings?.length ? (","

{warning}

"," {groupedWarnings.length ? ("," {groupedWarnings.map((warning) => (","

"," {warning.message}"," {warning.titles.length ? (","

","

Sources affected

"," {warning.titles.slice(0, 5).join(\", \")}","

"," ) : null}","

","export type AnswerDisplayTextOptions = {"," // Server-`preformatted` answers are display-ready by construction; skip the"," // noise-stripping prose sanitizer and fragment slicing so their document"," // names / facility codes survive."," preformatted?: boolean;"," // Keep server high-yield bold (**…**) so can render it."," preserveBold?: boolean;","};","// Fragments carrying a safety-critical signal must never be dropped by the","// compact 3-fragment / 85-word cap — a withhold/threshold/escalation caveat","// hidden from the primary prose is a clinical-safety regression.","const primaryAnswerSafetySignalPattern ="," /\\b(?:withhold|withheld|stop|cease|hold|held|threshold|escalat\\w*|urgent|red\\s*zone|amber|immediately|do not|contraindicat\\w*|toxic)\\b/i;"," * Produces sanitized, display-ready text for an answer."," * @param value - The answer text to sanitize"," * @param options - Controls preformatted handling and bold-text preservation"," * @returns The sanitized answer text","export function plainAnswerText(value: string, options: AnswerDisplayTextOptions = {}) {"," // clinicalProseUsefulness runs the source-noise stripper, so preformatted"," // answers bypass it and go straight to the lossless display path."," const base = options.preformatted ? value : clinicalProseUsefulness(value).text || value;"," return sanitizeAnswerDisplayText(base, {"," minLength: 8,"," minTokens: 2,"," preformatted: options.preformatted,"," preserveBold: options.preserveBold,"," })"," .replace(/(?:\\s*\\n\\s*)?Synthetic demo only:.*$/i, \"\")"," * Selects and compacts the primary answer text while preserving safety-critical guidance."," * @param value - The answer text to prepare for display"," * @param options - Formatting options, including preformatted mode"," * @returns The display-ready answer text","export function primaryAnswerDisplayText(value: string, options: AnswerDisplayTextOptions = {}) {"," // Deterministic preformatted answers are already concise and display-ready;"," // the fragment-level usefulness pass below would re-strip the very names/codes"," // the preformatted path just preserved, so return them as-is."," if (options.preformatted) return plainAnswerText(value, options);"," // Skip whole-text clinicalProseUsefulness: its 3-token floor drops short"," // safety sentences (\"Stop lithium.\") before the fragment-level safety"," // bypass below can rescue them."," const cleaned = sanitizeAnswerDisplayText(value, {"," preformatted: false,"," const fragments = cleaned"," .split(/\\r?\\n+/)"," .flatMap((line: string) =>"," line.split(/(?<=[.!?])\\s+(?=(?:[A-Z]|\\*\\*|If\\b|When\\b|Do\\b|Use\\b|Monitor\\b|Escalate\\b|Document\\b))/),"," )"," .map((fragment: string) =>"," fragment"," .replace(/^(?:[-*•]|\\d+[.)])\\s+/, \"\")"," .replace("," /^(?:\\*\\*)?(?:answer|summary|bottom line|direct answer|clinical point|key point|required actions?|monitoring(?:\\/timing)?|thresholds?|dose detail|medication(?:\\/dose details?)?|escalation(?:\\/risk)?|risk|safety|documentation(?:\\/forms)?|source gaps?)(?:\\*\\*)?:\\s+/i,"," \"\","," )"," .trim(),"," // Safety-bearing fragments pass through untouched and are never dropped by"," // the usefulness/length gate — a short caveat like \"Contraindicated in"," // pregnancy\" (under the 8-word floor) must still reach the display."," primaryAnswerSafetySignalPattern.test(fragment) ? fragment : clinicalProseUsefulness(fragment).text || fragment,"," .filter((fragment: string) => {"," if (!fragment) return false;"," if (primaryAnswerSafetySignalPattern.test(fragment)) return true;"," const useful = clinicalProseUsefulness(fragment);"," return useful.useful || fragment.split(/\\s+/).length >= 8;"," });"," const uniqueFragments = Array.from(new Set(fragments));"," const selected: string[] = [];"," let nonSafetyKept = 0;"," let wordBudget = 85;"," for (const fragment of uniqueFragments) {"," if (primaryAnswerSafetySignalPattern.test(fragment)) {"," selected.push(fragment);"," continue;"," if (nonSafetyKept >= 3 || wordBudget <= 0) continue;"," nonSafetyKept += 1;"," const words = fragment.split(/\\s+/).filter(Boolean);"," if (words.length <= wordBudget) {"," wordBudget -= words.length;"," } else {"," selected.push("," `${words"," .slice(0, wordBudget)"," .join(\" \")"," .replace(/[;,:-]\\s*$/, \"\")}...`,"," );"," wordBudget = 0;"," return selected.join(\" \") || cleaned;","// One compact \"Sources\" pill in every state: the amber Source-only pill and the","// \"Review source match\" banner already carry the verify-first caveat, so the","// capsule label no longer restates grounding strength.","function sourceCapsuleDisplay({ sourceCount }: { sourceCount: number }): {"," label: string;"," showCountBadge: boolean;","} {"," if (sourceCount <= 0) return { label: \"No direct source found\", showCountBadge: false };"," return { label: \"Sources\", showCountBadge: true };","export function sourceStatusDotClass(metadata: ReturnType | null | undefined) {"," if (!metadata) return statusDotMuted;"," if (metadata.document_status === \"current\") return statusDotReady;"," if (metadata.document_status === \"review_due\" || metadata.document_status === \"outdated\") return statusDotReview;"," return statusDotMuted;","type CapsulePreviewSource = {"," id: string;"," title: string;"," pageNumber: number | null;"," metadata: ReturnType;"," score: number;"," href: string;"," snippet?: string;"," sourceStrength?:"," SourceLink[\"sourceStrength\"] | BestSourceRecommendation[\"source_strength\"] | SearchResult[\"source_strength\"];","function sourceBadgeLabel(index: number) {"," return `S${index + 1}`;","function sourceBadgeToneClass(metadata: ReturnType, index: number) {"," if (metadata.document_status === \"review_due\" || metadata.document_status === \"outdated\") {"," return \"border-[color:var(--warning-border)] bg-[color:var(--warning-soft)] text-[color:var(--warning)]\";"," if (index === 0) {"," return \"border-[color:var(--clinical-accent-border)] bg-[color:var(--clinical-accent)] text-[color:var(--clinical-accent-contrast)]\";"," return \"border-[color:var(--clinical-accent-border)] bg-[color:var(--clinical-accent-soft)] text-[color:var(--clinical-accent)]\";","function sourceSupportLabel(source: CapsulePreviewSource, index: number) {"," if (!source.sourceStrength || source.sourceStrength === \"none\") return \"Unsupported\";"," if (source.sourceStrength === \"limited\") return \"Partial\";"," if (source.sourceStrength === \"moderate\") return \"Partial\";"," if (index === 0 || source.sourceStrength === \"strong\") return \"Direct\";"," return \"Partial\";","function sourceStatusShortLabel(metadata: ReturnType) {"," if (metadata.document_status === \"review_due\") return \"Review due\";"," if (metadata.document_status === \"outdated\") return \"Outdated\";"," if (metadata.document_status === \"current\") return \"Current\";"," return sourceStatusLabel(metadata);","function sourcePreviewPageCountLabel(previewSources: CapsulePreviewSource[]) {"," const uniquePages = new Set(previewSources.map((source) => source.pageNumber).filter((page) => page !== null));"," const count = uniquePages.size || previewSources.length;"," return `${count} page${count === 1 ? \"\" : \"s\"}`;","function capsulePreviewSources("," bestSource: BestSourceRecommendation | null,"," sources: SearchResult[],"," sourceLinks: SourceLink[] = [],"," const rows: CapsulePreviewSource[] = [];"," const seen = new Set();"," const pushRow = (row: CapsulePreviewSource) => {"," const key = `${row.id}:${row.title}:${row.pageNumber ?? \"n/a\"}`;"," if (seen.has(key)) return;"," seen.add(key);"," rows.push(row);"," };"," sourceLinks.slice(0, 5).forEach((source) => {"," pushRow({"," id: source.chunk_id,"," title: source.title || source.file_name || \"Source\","," pageNumber: source.page_number,"," metadata: normalizeSourceMetadata(source.sourceMetadata),"," score: source.score ?? 0,"," href: source.href,"," snippet: source.snippet,"," sourceStrength: source.sourceStrength,"," if (bestSource) {"," id: bestSource.chunk_id,"," title: bestSource.title || bestSource.file_name || \"Source\","," pageNumber: bestSource.page_number,"," metadata: normalizeSourceMetadata(bestSource.source_metadata),"," score: bestSource.score,"," href: bestSource.viewer_href,"," sourceStrength: bestSource.source_strength,"," sources.slice(0, 5).forEach((source) => {"," id: source.id,"," metadata: normalizeSourceMetadata(source.source_metadata),"," score: source.hybrid_score ?? source.similarity ?? source.lexical_score ?? 0,"," href: sourceResultHref(source),"," sourceStrength: source.source_strength,"," return rows.slice(0, 4);","function SourcePreviewContent({"," previewSources,"," quoteText,"," copiedQuote,"," onCopyQuote,"," showHeader = true,"," previewSources: CapsulePreviewSource[];"," quoteText?: string | null;"," copiedQuote: boolean;"," onCopyQuote: () => void;"," showHeader?: boolean;"," const primaryPreviewSource = previewSources[0] ?? null;"," const reviewDueSource = previewSources.find("," (source) => source.metadata.document_status === \"review_due\" || source.metadata.document_status === \"outdated\","," <>"," {showHeader ? (","

","

Sources

"," "," {sourcePreviewPageCountLabel(previewSources)}"," ","

","

Open the original PDF page.

","

"," className={cn(\"grid gap-0 divide-y divide-[color:var(--border)]\", showHeader ? \"mt-3\" : \"\")}"," role=\"list\""," aria-label=\"Sources behind this answer\""," {previewSources.map((source, index) => ("," "," "," Best match","

"," ) : index === 1 ? (","

Also used

"," ) : null}","

"," "," {sourceBadgeLabel(index)}"," "," "," {cleanDisplayTitle(source.title)}"," "," "," p. {source.pageNumber ?? \"n/a\"}"," ·"," {sourceSupportLabel(source, index)}"," "," "," {sourceStatusShortLabel(source.metadata)}"," "," "," "," {index === 0 ? Open : null}"," "," ))}"," {quoteText ? (","

"," “{quoteText}”","

","

"," {primaryPreviewSource ? ("," "," Open source page"," "," ) : null}"," {quoteText ? ("," "," {sourceOnlyNoticeOpen ? ("," "," This answer was assembled from your documents without the AI model, so it may be less complete."," Verify dose, threshold, route, timing, monitoring, and risk details against the cited passages"," below.","

","

"," "," ) : null}"," {sourceCapsuleButton}"," {canOpenSourcePreview && !usePreviewSheet ? ("," setSourcePreviewOpen(false)}"," anchorRef={sourceCapsuleRef}"," "," "," setSourcePreviewOpen(false)}"," title=\"Sources\""," description=\"Open the original PDF page.\""," titleAccessory={"," "," {sourcePreviewPageCountLabel(previewSources)}"," "," }"," closeLabel=\"Close answer sources\""," contentClassName=\"sm:max-w-xl\""," returnFocusRef={sourceCapsuleRef}"," portal","

"," showHeader={false}"," ","

"," onClick={onCopy}"," aria-label=\"Copy answer with source status\""," {copied ? \"Copied with sources\" : \"Copy with sources\"}"," ","export function UserQuestionBubble({ query }: { query: string }) {"," const cleaned = query.trim();","

"," data-testid=\"user-question-bubble\""," className=\"ml-auto max-w-[min(28rem,86%)] rounded-lg border border-[color:var(--border)] bg-[color:var(--clinical-accent-soft)] px-3 py-2 text-right shadow-[var(--shadow-inset)] sm:max-w-[28rem]\"","

{cleaned}

","type KeyClinicalItem = {"," label?: string;"," detail: string;","function keyClinicalItemFromText(item: string): KeyClinicalItem | null {"," const cleaned = item.replace(/^[-*•]\\s*/, \"\").trim();"," if (cleaned.length < 24) return null;"," const [labelCandidate, ...detailParts] = cleaned.split(/\\s+(?:—|-)\\s+/);"," const label = labelCandidate?.trim();"," const detail = detailParts.join(\" — \").trim();"," const id = comparableAnswerText(cleaned);"," if (label && detail && label.length <= 64) return { id, label, detail };"," return { id, detail: cleaned };","export function keyClinicalItemsFromSections("," sections: Array,","): KeyClinicalItem[] {"," const usefulKinds = new Set(["," \"required_actions\","," \"monitoring_timing\","," \"medication_dose\","," \"thresholds\","," \"escalation_risk\","," \"contraindications_cautions\","," \"comparison\","," ]);"," return sections"," .filter((section) => usefulKinds.has(section.kind))"," .flatMap((section) =>"," section.body"," .split(/\\n+|(?<=\\.)\\s+(?=(?:Monitor|Check|Use|Avoid|Escalate|Withhold|Review|Document|Repeat|Consider)\\b)/)"," .map((item) => keyClinicalItemFromText(item))"," .filter((item): item is KeyClinicalItem => Boolean(item)),"," .filter((item, index, items) => items.findIndex((candidate) => candidate.id === item.id) === index)"," .slice(0, 5);","export function keyClinicalItemsFromTable(item: VisualEvidenceCard | null): KeyClinicalItem[] {"," const rows = item?.tableRows?.filter((row) => row.some((cell) => cell.trim())) ?? [];"," if (rows.length < 2) return [];"," return rows"," .slice(0, 3)"," .map((row): KeyClinicalItem | null => {"," const [domain, baseline] = row.map((cell) => cell.trim()).filter(Boolean);"," if (!domain || !baseline) return null;"," return {"," id: comparableAnswerText([domain, baseline].join(\" \")),"," label: domain,"," detail: baseline,"," };"," .filter((value): value is KeyClinicalItem => value !== null)",[2134,2135,2136,2137,2138,2139,2140,2141,2142,2143],{"_1041":46,"_46":2159},{"_1041":2145,"_256":1438,"_1066":2157,"_1067":2158},{"_1041":2145,"_256":1438,"_1066":2155,"_1067":2156},{"_1041":46,"_46":2154},{"_1041":2145,"_256":1408,"_1066":2152,"_1067":2153},{"_1041":46,"_46":2151},{"_1041":2145,"_256":1167,"_1066":2149,"_1067":2150},{"_1041":46,"_46":2148},{"_1041":2145,"_256":1060,"_1066":2146,"_1067":2147},{"_1041":46,"_46":2144},"\n* No commit or PR was created because the worktree was clean and I made no new changes.\n\n**Testing**\n* ⚠️ `npx -y node@24 $(which npm) run test -- tests/answer-content.test.ts tests/rag-answer-text.test.ts --reporter=dot` — initially failed because dependencies were not installed (`vitest` missing from `node_modules`).\n* ✅ `npx -y node@24 $(which npm) ci`\n* ✅ `npx -y node@24 $(which npm) run test -- tests/answer-content.test.ts tests/rag-answer-text.test.ts --reporter=dot`\n* ✅ `npx -y node@24 $(which npm) run typecheck`\n* ✅ `git status --short --branch` — confirmed clean worktree on branch `work`.","repo_file_citation",91,100,"\n* Regression coverage exists for preserving useful bold emphasis while removing bolded catalogue noise. ",250,272,"\n* Bold-preserving answer polishing now strips catalogue/source artifacts on a de-bolded copy, then restores surviving bold spans, so bolded catalogue noise does not bypass artifact removal. ",27,37,"\n* Regression coverage exists for the passive safety phrasing (`Clozapine should be held.`), along with stop/escalation/contraindication compact-answer cases. ",301,319,237,241,"### Summary\n* I inspected the current PR workspace and found the remaining actionable review items already addressed on the current branch; there were no new file changes to commit.\n* The passive “held” safety caveat is covered by the safety matcher via `held`, and safety-bearing fragments bypass the usefulness/length filter and compact-answer cap. ",{"_92":512,"_42":84,"_96":512,"_2162":2163,"_2164":2165,"_2166":2167,"_132":-5,"_119":2168},[83],"input_items",[2187,2188,2189,2190,2191,2192,2193,2194,2195,2196,2197,2198,2199,2200,2201,2202,2203,2204,2205,2206,2207,2208,2209,2210,2211,2212,2213,2214,2215,2216,2217,2218,2219,2220,2221,2222],"external_post_config",{"_2169":2170,"_449":382,"_2171":492,"_460":-5,"_2172":443,"_2173":-5,"_2174":-5,"_2175":2176,"_2177":2178,"_2179":-5,"_2180":-5,"_2181":2182,"_2183":15,"_2184":59,"_2185":54,"_2186":15},"user_model_slug","slug",1783878839.176918,"installation_id",131602480,"pr_number","repo_id","gitlab_service_account_project_id","review_trigger","comment_id",4952175528,"comment_type","issue","pr_write_guard_token","pending_pr_reaction_id","pending_comment_reaction_id",381601921,"comment_if_no_findings","comment_on_error","share_url","is_parallel_review",{"_92":630,"_96":512,"_624":2271},{"_499":500,"_501":502,"_2268":506,"_2269":129,"_508":-5,"_92":2270},{"_92":2223,"_501":2267,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2266,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2265,"_256":1438,"_2226":2227,"_2228":-5},{"_92":2223,"_501":2264,"_256":2225,"_2226":2227,"_2228":2245},{"_92":2223,"_501":2263,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2262,"_256":2231,"_2226":2227,"_2228":2232},{"_92":2223,"_501":2261,"_256":2238,"_2226":2227,"_2228":2239},{"_92":2223,"_501":2260,"_256":2225,"_2226":2227,"_2228":2234},{"_92":2223,"_501":2259,"_256":2225,"_2226":2227,"_2228":2229},{"_92":2223,"_501":2258,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2257,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2256,"_256":2225,"_2226":2227,"_2228":2245},{"_92":2223,"_501":2256,"_256":1438,"_2226":2227,"_2228":-5},{"_92":2223,"_501":2255,"_256":2225,"_2226":2227,"_2228":2245},{"_92":2223,"_501":2254,"_256":1438,"_2226":2227,"_2228":-5},{"_92":2223,"_501":2253,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2252,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2251,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2250,"_256":1438,"_2226":2227,"_2228":2156},{"_92":2223,"_501":2249,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2248,"_256":1167,"_2226":2227,"_2228":-5},{"_92":2223,"_501":2247,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2246,"_256":1438,"_2226":2227,"_2228":-5},{"_92":2223,"_501":2244,"_256":2225,"_2226":2227,"_2228":2245},{"_92":2223,"_501":2243,"_256":1438,"_2226":2227,"_2228":-5},{"_92":2223,"_501":2242,"_256":-5,"_2226":-5,"_2228":-5},{"_92":2223,"_501":2241,"_256":2231,"_2226":2227,"_2228":2232},{"_92":2223,"_501":2240,"_256":2238,"_2226":2227,"_2228":2239},{"_92":2223,"_501":2237,"_256":2238,"_2226":2227,"_2228":2239},{"_92":2223,"_501":2236,"_256":2225,"_2226":2227,"_2228":2234},{"_92":2223,"_501":2235,"_256":2225,"_2226":2227,"_2228":2229},{"_92":2223,"_501":2233,"_256":2225,"_2226":2227,"_2228":2234},{"_92":2223,"_501":2230,"_256":2231,"_2226":2227,"_2228":2232},{"_92":2223,"_501":2224,"_256":2225,"_2226":2227,"_2228":2229},"pull_request_comment","`@BigSimmo` Understood — thanks for the clarification. Since the migration file was removed from this PR, the ordering issue no longer applies here. Good to know the corrected `string_agg(... ORDER BY ...)` form is captured in the F7 follow-up notes for whenever that migration gets reintroduced.\n\n\n\n","supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql","side","RIGHT","line",63,"

🧩 Analysis chain

🧬 Code Graph Analysis Results

\n\n\n\n","src/components/clinical-dashboard/display-text.ts",238,"`@BigSimmo` Thanks for the context — that's a sound resolution. Since live is already verified fail-closed on all eight primary RPCs, an incomplete migration stub would indeed just create a false \"applied\" state without capturing the exact bodies, effectively blocking a future accurate fix. Removing it until the byte-perfect codification can be done via a real DB connection is the right call.\n\nI'll drop this comment.\n\n\n\n",54,"Moot — the migration was removed from this PR. (The dump command lives in the F7 follow-up notes, where the `string_agg(... ORDER BY ...)` form is used.)\n\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_","Removed this migration. Live is already fail-closed on all 8 primary RPCs (verified); a byte-perfect codification is owner-driven (needs the DB dump), and a body-less stub would record as applied and block the real fix.\n\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_","`@BigSimmo` Confirmed — the updated `rhValueHeadPattern`, `posNegValueHeadPattern`, `standaloneBloodValueLinePattern`, and `bloodValueWithNounTailLinePattern` all now wrap the value tokens with optional `(?:\\*\\*)?`, so `o **RhD negative**` and `group: o **Negative**` are correctly guarded as blood values rather than converted to bullets, while the non-bold matching stays unchanged. Thanks for addressing this.\n\n(ノ◕‿◕)ノ*:･ﾟ✧\n\n\n\n","src/lib/source-text-sanitizer.ts",590,"Addressed: the blood-value guards are now bold-aware (optional `**` around the value) — a pure superset that leaves non-bold matching unchanged. Kept the auto-fix and verified.\n\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_","Addressed: `normalizePreformattedDisplayText` now honours `preserveBold` and strips `**` on the non-bold path (collapsed prior-answer preview), so no literal Markdown leaks. Kept the auto-fix and verified.\n\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_","\n### 💡 Codex Review\n\nHere are some automated review suggestions for this pull request.\n\n**Reviewed commit:** `eca2c84f1d`\n \n\n

ℹ️ About Codex in GitHub

","**_{_{![P1 Badge](https://img.shields.io/badge/P1-orange?style=flat)}} Preserve passive held safety caveats**\n\nWhen a short safety caveat is phrased in passive voice after the first three primary fragments, such as `Clozapine should be held.`, the current safety regex matches `hold` and `withheld` but not `held`. That fragment then falls through the usefulness/8-word filter and can be omitted from the compact primary answer, hiding the exact withhold instruction this guard is intended to preserve; a focused test with three ordinary leading sentences plus a fourth `...should be held` caveat would catch it.\n\nUseful? React with 👍 / 👎.","Removed this migration. Live already gates all 8 primary retrieval RPCs with fail-closed `retrieval_owner_matches` (verified via read-only pg_get_functiondef), a byte-perfect codification needs the owner's DB dump (not reproducible here), and a body-less stub records as applied and would block a later proper migration. F7 stays an owner-driven follow-up.\n\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_",105,"Fixed: the safety matcher now uses `escalat\\w*`/`contraindicat\\w*` (the bare stem + `\\b` never matched the inflected words), and safety-bearing fragments now bypass the usefulness/length filter and the 3-fragment/85-word cap. Regression tests added in tests/answer-content.test.ts.\n\n_🤖 Addressed by [Claude Code](https://claude.com/claude-code)_","\n### 💡 Codex Review\n\nHere are some automated review suggestions for this pull request.\n\n**Reviewed commit:** `af8d86117e`\n \n\n

ℹ️ About Codex in GitHub

","**_{_{![P2 Badge](https://img.shields.io/badge/P2-yellow?style=flat)}} Keep artifact stripping effective when preserving bold**\n\nWhen the display path preserves bold markers (e.g. `NaturalLanguageAnswer` now calls this with `preserveBold: true`), a generated or cached answer containing bolded catalogue/source noise such as `Dose evidence: **Lithium** Carbonate **250 mg** Tablet - Lithicarb®...` reaches the product/formulary stripping regexes with the `**` still embedded. Those regexes were written for unbolded text, so the catalogue fragment can survive into the primary answer even though the old path stripped bold first; make the artifact matching operate on an unbolded copy or make the patterns tolerate safe bold markers.\n\nUseful? React with 👍 / 👎.","\n### 💡 Codex Review\n\nHere are some automated review suggestions for this pull request.\n\n**Reviewed commit:** `71bd4c6cd0`\n \n\n

ℹ️ About Codex in GitHub

","**_{_{![P1 Badge](https://img.shields.io/badge/P1-orange?style=flat)}} Preserve safety fragments before usefulness filtering**\n\nSeparate from the fixed `escalat\\w*`/`contraindicat\\w*` stems, this safety check still only runs after `plainAnswerText`/the fragment filter have already applied `clinicalProseUsefulness` and the 8-word fallback. In an answer with normal leading prose followed by a short safety sentence such as `Stop lithium.` or `Cease clozapine.`, that sentence is removed before this branch can see it, so the compact primary answer can still omit the exact stop/cease instruction the guard is meant to preserve; move the safety-signal exemption before the usefulness/length filtering or include it in that filter.\n\nUseful? React with 👍 / 👎.","### Summary\n* Appended applyable primary retrieval RPC definitions to the owner-filter codification migration so fresh rebuilds/previews no longer record a body-less migration; the migration now documents applyable codification, keeps the fail-closed truth-table guard, and includes all eight primary RPC definitions. [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL38-L44](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L38-L44) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL48-L77](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L48-L77) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL81-L87](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L81-L87) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL289-L295](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L289-L295) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL425-L431](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L425-L431) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL484-L490](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L484-L490) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL587-L593](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L587-L593) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL661-L667](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L661-L667) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL737-L742](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L737-L742) [supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sqlL821-L827](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql#L821-L827)\n* Fixed compact answer safety-caveat preservation by matching full escalation/contraindication word forms, splitting contraindication sentences as safety fragments, and retaining safety-bearing fragments even when they are shorter than the general usefulness threshold. [src/components/clinical-dashboard/answer-content.tsxL231-L235](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/src/components/clinical-dashboard/answer-content.tsx#L231-L235) [src/components/clinical-dashboard/answer-content.tsxL251-L277](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/src/components/clinical-dashboard/answer-content.tsx#L251-L277) [src/components/clinical-dashboard/answer-content.tsxL279-L292](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/src/components/clinical-dashboard/answer-content.tsx#L279-L292)\n* Added focused regression coverage proving full-word “Escalate” and “Contraindicated” caveats remain visible after compact-answer processing. [tests/rag-answer-text.test.tsL1-L10](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/tests/rag-answer-text.test.ts#L1-L10) [tests/rag-answer-text.test.tsL27-L39](https://github.com/BigSimmo/Database/blob/d5ab4c38533d94613e527d7ef7cf388c00c14cd0/tests/rag-answer-text.test.ts#L27-L39)\n* Committed changes on the current branch: `21f8ec5 fix(ci): codify retrieval RPCs and safety caveats`.\n* Created a PR record with title: `fix(ci): codify retrieval RPCs and safety caveats`.\n\n**Testing**\n* ✅ `npx -y node@24 $(which npm) ci`\n* ✅ `npx -y node@24 $(which npm) run test -- tests/rag-answer-text.test.ts --reporter=dot`\n* ✅ `python3 - <<'PY' ... PY` — static migration validation confirmed exactly one definition for each of the eight primary retrieval RPCs, helper-based owner checks, and no legacy fail-open owner predicate in appended bodies.\n* ✅ `git diff --check`\n* ✅ `npx -y node@24 $(which npm) run typecheck`\n* ✅ `npx -y node@24 ./node_modules/eslint/bin/eslint.js src/components/clinical-dashboard/answer-content.tsx tests/rag-answer-text.test.ts --no-error-on-unmatched-pattern`\n\n⚠️ Did not run provider-backed Supabase checks because repository instructions require explicit confirmation before live/provider interactions.\n\n [View task →](https://chatgpt.com/s/cd_6a53c0dc61ec8191aab554b14744c7e7)","@Codex diagnose and fix failing CI test ","> [!NOTE]\n> Docstrings generation - SKIPPED\n> Skipped regeneration as there are no new commits. Docstrings already generated for this pull request at https://github.com/BigSimmo/Database/pull/521.\n\n\n> [!NOTE]\n> Autofix is a beta feature. Expect some limitations and changes as we gather feedback and continue to improve it.\n\n## Fixes Applied Successfully\n\nFixed 5 file(s) based on 4 unresolved review comments.\n\n\n\n**Files modified:**\n- `src/components/clinical-dashboard/display-text.ts`\n- `src/lib/source-text-sanitizer.ts`\n- `supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\n- `tests/display-text.test.ts`\n- `tests/source-text-sanitizer.test.ts`\n\n**Commit:** `d5ab4c38533d94613e527d7ef7cf388c00c14cd0`\n\nThe changes have been pushed to the `claude/rag-review-improvements-f1bf84` branch.\n\n**Time taken:** `6m 49s`\n","**Actionable comments posted: 4**\n\n> [!CAUTION]\n> Some comments are outside the diff and can’t be posted inline due to platform limitations.\n> \n> \n> \n>

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⚠️ Outside diff range comments (1)

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src/components/clinical-dashboard/answer-content.tsx (1)
\n> \n> `231-292`: _🎯 Functional Correctness_ | _🟠 Major_ | _⚡ Quick win_\n> \n> **Head fragments can still lose safety cues** `primaryAnswerDisplayText` only rescues `safetyTail`; if a safety cue appears in one of the first 3 fragments after word 85, truncation still drops it. Add a regression test in `tests/rag-answer-text.test.ts` for a long head fragment containing `withhold`/`do not`, and preserve safety-bearing head content when applying the cap.\n> \n>
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🤖 Prompt for AI Agents
\n> \n> ```\n> Verify each finding against current code. Fix only still-valid issues, skip the\n> rest with a brief reason, keep changes minimal, and validate.\n> \n> In `@src/components/clinical-dashboard/answer-content.tsx` around lines 231 - 292,\n> The 85-word truncation in primaryAnswerDisplayText can remove safety signals\n> from the first three fragments. Update the head-cap logic to preserve\n> safety-bearing head content, including fragments matching\n> primaryAnswerSafetySignalPattern, while retaining the existing compact behavior\n> for non-safety text; add a regression case in rag-answer-text.test.ts covering a\n> long head fragment containing “withhold” or “do not”.\n> ```\n> \n>
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🧹 Nitpick comments (1)

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tests/rag-offline-answer.test.ts (1)
\n\n`165-185`: _📐 Maintainability & Code Quality_ | _🔵 Trivial_ | _⚡ Quick win_\n\n**Assert the new telemetry contract directly.**\n\nThis test verifies fail-closed behavior, but it would still pass if `recordHybridRpcError` stopped recording `match_document_chunks_text`. Add an assertion at the telemetry or structured-logging boundary for RPC `match_document_chunks_text` and code `42P01`.\n\n
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🤖 Prompt for AI Agents
\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn `@tests/rag-offline-answer.test.ts` around lines 165 - 185, Extend the test\naround answerOffline to assert the telemetry or structured-logging boundary\nrecords an RPC error for match_document_chunks_text with code 42P01. Keep the\nexisting fail-closed assertions unchanged, and use the test’s existing telemetry\ncapture or spy mechanism rather than only checking the returned answer.\n```\n\n
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🤖 Prompt for all review comments with AI agents

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🪄 Autofix (Beta)

\n\n✅ Autofix completed\n\n

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ℹ️ Review info

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⚙️ Run configuration

\n\n**Configuration used**: Organization UI\n\n**Review profile**: CHILL\n\n**Plan**: Pro Plus\n\n**Run ID**: `7474c87f-ee2b-4c19-bea5-60ac243a0764`\n\n

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📥 Commits

\n\nReviewing files that changed from the base of the PR and between 9da527c555a817f248cc73a5a4ac8afe36b82dc3 and e87c446854c5089f16ef0fbda9d69eea59f8bf91.\n\n

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📒 Files selected for processing (16)

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\n\n","_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\n\n

🧩 Analysis chain

🤖 Prompt for AI Agents

\n\n```\nVerify each finding against current code. Fix only still-valid issues, skip the\nrest with a brief reason, keep changes minimal, and validate.\n\nIn\n`@supabase/migrations/20260712000000_forward_codify_retrieval_owner_matches.sql`\naround lines 56 - 65, Update the commented psql query that builds rpc_bodies.sql\nso string_agg orders its inputs by p.proname and p.oid, and remove the trailing\nouter ORDER BY p.proname. Keep the existing function filtering and aggregation\nbehavior unchanged.\n```\n\n

\n\n\n\n\n\n\n\n","_🔒 Security & Privacy_ | _🟠 Major_ | _🏗️ Heavy lift_\n\n**Append the retrieval RPC definitions before merging.**\n\nThis migration ends at the marker and contains no `CREATE OR REPLACE FUNCTION` statements. A fresh rebuild therefore retains the stale fail-open, sentinel-blind RPC bodies described in Lines 18-22, so the intended tenancy contract is not reproducible. Append the exact live definitions and verify the migration contains all eight functions before landing.\n\n\n\n\n\n\n\nAlso applies to: 107-107\n\n

🤖 Prompt for AI Agents

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🧩 Analysis chain

🤖 Prompt for AI Agents

\n\n\n\n\n\n\n\n\n\n✅ Confirmed as addressed by @BigSimmo\n\n","_🎯 Functional Correctness_ | _🟡 Minor_ | _⚡ Quick win_\n\n

🧩 Analysis chain

\n\n**Handle bold markers in the preformatted path.** `sanitizeAnswerDisplayText(..., { preformatted: true })` keeps `**...**` intact, and `PriorAnswerTurnSurface` renders that result in a plain `

`, so collapsed prior answers can show literal Markdown markers. Either strip/preserve bold explicitly in this branch or pass `preserveBold` through, and add a preformatted+bold regression test.\n\n

🤖 Prompt for AI Agents

\n\n\n\n\n\n\n\n\n\n✅ Confirmed as addressed by @BigSimmo\n\n","\n### 💡 Codex Review\n\nHere are some automated review suggestions for this pull request.\n\n**Reviewed commit:** `e87c446854`\n \n\n

ℹ️ About Codex in GitHub

","**_{_{![P1 Badge](https://img.shields.io/badge/P1-orange?style=flat)}} Include RPC bodies before applying this migration**\n\nThis file lives under `supabase/migrations`, so as soon as `db push`/preview reset applies it, Supabase records version `20260712000000` as complete; because the migration only runs the truth-table guard and leaves the actual `create or replace function` bodies as an owner TODO here, fresh previews/DR rebuilds still get the stale fail-open/sentinel-blind retrieval RPCs that the header says this migration codifies, and appending to this same migration later will not run in environments that already recorded it. Please land the dumped RPC definitions in an applyable migration instead of an already-runnable placeholder.\n\nUseful? React with 👍 / 👎.","**_{_{![P1 Badge](https://img.shields.io/badge/P1-orange?style=flat)}} Match full safety terms before truncating caveats**\n\nWhen a safety caveat appears after the first three fragments and uses normal wording such as “Escalate for senior review” or “Contraindicated in pregnancy”, this regex does not match it: the alternatives `escalat` and `contraindicat` are followed by the final `\\b`, so they only match the truncated stem, not `escalate`, `escalation`, `contraindicated`, or `contraindication`. In that scenario `safetyTail` stays empty and the compact answer cap can still hide the exact escalation/contraindication caveat this change is meant to preserve; use complete word forms or a prefix-safe pattern for these stems.\n\nUseful? React with 👍 / 👎.","\n\n\n[![Review Change Stack](https://storage.googleapis.com/coderabbit_public_assets/review-stack-in-coderabbit-ui.svg)](https://app.coderabbit.ai/change-stack/BigSimmo/Database/pull/514?utm_source=github_walkthrough&utm_medium=github&utm_campaign=change_stack)\n\n\n\n\n> [!NOTE]\n> Currently processing new changes in this PR. This may take a few minutes, please wait...\n> \n>

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⚙️ Run configuration

\n> \n> **Configuration used**: Organization UI\n> \n> **Review profile**: CHILL\n> \n> **Plan**: Pro Plus\n> \n> **Run ID**: `548a5329-8182-4061-ac05-6a518e363057`\n> \n>

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📥 Commits

\n> \n> Reviewing files that changed from the base of the PR and between eca2c84f1d241c4cbb282b8d8f621b2201afbc92 and 10f39fd8a92e03aab569c79e9af29aa11c626d3c.\n> \n>

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📝 Walkthrough

✅ Passed checks (9 passed)

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✨ Finishing Touches

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📝 Generate docstrings

\n\n- [ ] Create stacked PR\n- [ ] Commit on current branch\n\n

🧪 Generate unit tests (beta)

\n\n- [ ] Create PR with unit tests\n- [ ] Commit unit tests in branch `claude/rag-review-improvements-f1bf84`\n\n

✨ Simplify code

\n\n- [ ] Create PR with simplified code\n- [ ] Commit simplified code in branch `claude/rag-review-improvements-f1bf84`\n\n

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\n\n\n\n\n---\n\n\n\n\n_{Comment `@coderabbitai help` to get the list of available commands.}\n\n","[supa]:fqapdpsewnpnwniwmopy\n**Updates to [Preview Branch (claude/rag-review-improvements-f1bf84) ↗︎](https://supabase.com/dashboard/project/fqapdpsewnpnwniwmopy)**\n\n| Deployments | Status | Updated |\n| ----------- | --------------------------- | ------------------------- |\n| Database | ✅ | Sun, 12 Jul 2026 17:51:15 UTC |\n| Services | ✅ | Sun, 12 Jul 2026 17:51:15 UTC |\n| APIs | ✅ | Sun, 12 Jul 2026 17:51:15 UTC |\n\nTasks are run on every commit but only new migration files are pushed.\nClose and reopen this PR if you want to apply changes from existing seed or migration files.\n\n| Tasks | Status | Updated |\n| -------------- | ---------------------------- | -------------------------- |\n| Configurations | ✅ | Sun, 12 Jul 2026 17:51:17 UTC |\n| Migrations | ✅ | Sun, 12 Jul 2026 17:51:19 UTC |\n| Seeding | ✅ | Sun, 12 Jul 2026 17:51:20 UTC |\n| Edge Functions | ✅ | Sun, 12 Jul 2026 17:51:21 UTC |\n\n

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