\n 130\t Current medications\n 131\t\n 132\t {selected.length > 0 ? (\n 133\t

\n 136\t
onToggle(slug)}\n 139\t data-testid={`patient-medication-${slug}`}\n 140\t aria-label={`Remove ${medicationDisplayName(slug)}`}\n 141\t className={cn(segmentBase, segmentActive, \"inline-flex items-center gap-1.5\")}\n 142\t >\n 143\t {medicationDisplayName(slug)}\n 144\t
\n 145\t \n 325\t selected={profile.medications ?? []}\n 326\t onToggle={toggleMedication}\n 327\t />\n 328\t\n 329\t
\n 330\t Allergies\n 331\t
\n 332\t {ALLERGY_OPTIONS.map((option) => {\n 333\t const active = allergies.has(option.value);\n 334\t return (\n 335\t toggleAllergy(option.value)}\n 340\t data-testid={`patient-allergy-${option.value}`}\n 341\t className={cn(segmentBase, active ? segmentActive : segmentIdle)}\n 342\t >\n 343\t {option.label}\n 344\t \n 345\t );\n 346\t })}\n 347\t
\n 348\t
\n 349\t\n 350\t
\n 28\texport function PatientDetailsDockAction() {\n 29\t const { profile, isEmpty } = usePatientProfile();\n 30\t const [host, setHost] = useState
(null);\n 31\t const [open, setOpen] = useState(false);\n 32\t\n 33\t useEffect(() => {\n 34\t const phoneMediaQuery = window.matchMedia(\"(max-width: 639px)\");\n 35\t let observer: MutationObserver | null = null;\n 36\t const sync = () => {\n 37\t if (!phoneMediaQuery.matches) {\n 38\t observer?.disconnect();\n 39\t observer = null;\n 40\t setHost(null);\n 41\t return;\n 42\t }\n 43\t setHost(document.getElementById(patientDetailsAddonSlotId));\n 44\t if (!observer) {\n 45\t observer = new MutationObserver(sync);\n 46\t observer.observe(document.body, { childList: true, subtree: true });\n 47\t }\n 48\t };\n 49\t sync();\n 50\t phoneMediaQuery.addEventListener(\"change\", sync);\n 51\t // The dock (and therefore the slot) mounts and unmounts with the composer,\n 52\t // so watch for it rather than assuming it exists on first paint.\n 53\t return () => {\n 54\t phoneMediaQuery.removeEventListener(\"change\", sync);\n 55\t observer?.disconnect();\n 56\t };\n 57\t }, []);\n 58\t\n 59\t // Count the entered dimensions, not just the medications, so the badge means\n 60\t // \"how much context is loaded\" rather than \"how many drugs\".\n 61\t const enteredCount = countEnteredFields(profile);\n 62\t\n 63\t const sheet = (\n 64\t setOpen(false)}\n 67\t title=\"Patient details\"\n 68\t description=\"Anonymous physiology and current medications. Cleared when the tab closes.\"\n 69\t mobilePlacement=\"bottom\"\n 70\t testId=\"patient-details-sheet\"\n 60\t });\n 61\t\n 62\t it(\"carries the unresolved row count for a medication the parser could not fully read\", () => {\n 63\t // Bupropion's CYP2D6-substrate row has no enumerable counterparty.\n 64\t const result = evaluateMedicationInteractions(\"bupropion-sr\", []);\n 65\t expect(result.unresolvedRowCount).toBeGreaterThan(0);\n 66\t expect(result.totalRowCount).toBeGreaterThanOrEqual(result.unresolvedRowCount);\n 67\t });\n 68\t\n 69\t it(\"matches methadone's later CNS-depressant clause against diazepam\", () => {\n 70\t const result = evaluateMedicationInteractions(\"methadone\", [\"diazepam\"]);\n 71\t expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n 72\t expect(result.highestTone).toBe(\"danger\");\n 73\t });\n 74\t\n 75\t it(\"matches cetirizine's sedative mechanism but keeps the row incomplete\", () => {\n 76\t const result = evaluateMedicationInteractions(\"cetirizine\", [\"diazepam\"]);\n 77\t expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n 78\t expect(result.unresolvedRowCount).toBeGreaterThan(0);\n 79\t });\n 80\t\n 81\t it(\"finds a reverse naltrexone edge when considering buprenorphine-naloxone\", () => {\n 82\t const result = evaluateMedicationInteractions(\"buprenorphine-naloxone\", [\"naltrexone\"]);\n 83\t expect(result.interactions.some((item) => item.counterpartySlug === \"naltrexone\")).toBe(true);\n 84\t expect(result.highestTone).toBe(\"danger\");\n 85\t });\n 86\t\n 87\t it(\"treats missing index data as incomplete rather than green\", () => {\n 88\t const result = evaluateMedicationInteractions(\"not-a-real-drug\", [\"sertraline\"]);\n 89\t expect(result.interactions).toHaveLength(0);\n 90\t expect(result.totalRowCount).toBe(0);\n 91\t expect(result.dataAvailable).toBe(false);\n 92\t expect(result.unresolvedRowCount).toBe(1);\n 93\t expect(\n 94\t composeMedicationVerdict({\n 95\t considerationTone: null,\n 96\t considerationCount: 0,\n 97\t unassessedCount: 0,\n 98\t interactionTone: result.highestTone,\n 99\t interactionCount: 0,\n 100\t unresolvedRowCount: result.unresolvedRowCount,\n 101\t }).tone,\n 102\t ).toBe(\"neutral\");\n 103\t expect(interactionRowCount(\"not-a-real-drug\")).toBe(0);\n 104\t });\n 105\t\n 106\t it(\"names counterparties from the index, falling back to the slug\", () => {\n 107\t expect(medicationDisplayName(\"tramadol-ir\")).toBe(\"Tramadol IR\");\n 108\t expect(medicationDisplayName(\"not-a-real-drug\")).toBe(\"not-a-real-drug\");\n 109\t });\n 110\t\n 111\t it(\"maps every severity to a tone, and never maps an unknown severity to success\", () => {\n 112\t expect(SEVERITY_TONE.critical).toBe(\"danger\");\n 113\t expect(SEVERITY_TONE.moderate).toBe(\"warning\");\n 114\t expect(SEVERITY_TONE.low).toBe(\"success\");\n 115\t expect(SEVERITY_TONE.unknown).toBe(\"neutral\");\n 116\t });\n 117\t});\n 118\t\n 119\tdescribe(\"composeMedicationVerdict\", () => {\n 120\t const base = {\n 60\t\n 61\t it(\"renders nothing when the dock exposes no slot\", () => {\n 62\t renderAction();\n 63\t expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n 64\t });\n 65\t\n 66\t it(\"renders nothing above the phone breakpoint, where the panel is already inline\", () => {\n 67\t const observe = vi.spyOn(MutationObserver.prototype, \"observe\");\n 68\t setPhoneViewport(false);\n 69\t mountSlot();\n 70\t renderAction();\n 71\t\n 72\t expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n 73\t expect(observe).not.toHaveBeenCalled();\n 74\t });\n 75\t\n 76\t it(\"is a real button that opens the patient sheet\", () => {\n 77\t mountSlot();\n 78\t renderAction();\n 79\t\n 80\t const action = screen.getByTestId(\"patient-details-dock-action\");\n 81\t expect(action).toHaveAttribute(\"type\", \"button\");\n 82\t expect(action).toHaveAttribute(\"aria-haspopup\", \"dialog\");\n 83\t expect(action).toHaveAttribute(\"aria-expanded\", \"false\");\n 84\t\n 85\t fireEvent.click(action);\n 55\t it(\"removes a medication when its chip is activated again\", () => {\n 56\t renderPanel();\n 57\t\n 58\t fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n 59\t fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n 60\t fireEvent.click(screen.getByTestId(\"patient-medication-sertraline\"));\n 61\t\n 62\t expect(storedProfile().medications).toEqual([]);\n 63\t expect(screen.queryByTestId(\"patient-medication-sertraline\")).not.toBeInTheDocument();\n 64\t });\n 65\t\n 66\t it(\"gives the remove control a name that survives without the icon\", () => {\n 67\t renderPanel();\n 68\t fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n 69\t fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n 70\t\n 71\t expect(screen.getByTestId(\"patient-medication-sertraline\")).toHaveAttribute(\"aria-label\", \"Remove Sertraline\");\n 72\t });\n 73\t\n 74\t it(\"offers nothing for a drug outside the catalogue, and says why\", () => {\n 75\t renderPanel();\n 76\t\n 77\t fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"warfarinx\" } });\n 78\t\n 79\t expect(screen.getByText(/Only medications in this catalogue can be interaction-checked/i)).toBeInTheDocument();\n 80\t });\n 81\t\n 82\t it(\"drops the medication list and the search term on Clear\", () => {\n 83\t const consoleError = vi.spyOn(console, \"error\").mockImplementation(() => undefined);\n 84\t renderPanel();\n 85\t fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n","/bin/bash -lc \"git status --short --branch; git rev-parse HEAD; git show --stat --oneline --decorate HEAD; nl -ba scripts/build-medication-interaction-index.ts | sed -n '125,310p'; nl -ba src/lib/medication-interactions.ts | sed -n '45,245p'; nl -ba src/components/clinical-dashboard/patient-profile-panel.tsx | sed -n '112,145p;325,350p'; nl -ba src/components/clinical-dashboard/patient-details-dock-action.tsx | sed -n '28,70p'; nl -ba tests/medication-interactions.test.ts | sed -n '60,120p'; nl -ba tests/patient-details-dock-action.dom.test.tsx | sed -n '60,85p'; nl -ba tests/patient-profile-medications.dom.test.tsx | sed -n '55,85p'\"",[1144],401,"exec-0ec4d9f7-1640-42e8-9308-b95fcebd07d6","52309",{"_925":1145,"_96":941},"git status --short --branch; git rev-parse HEAD; git show --stat --oneline --decorate HEAD; nl -ba scripts/build-medication-interaction-index.ts | sed -n '125,310p'; nl -ba src/lib/medication-interactions.ts | sed -n '45,245p'; nl -ba src/components/clinical-dashboard/patient-profile-panel.tsx | sed -n '112,145p;325,350p'; nl -ba src/components/clinical-dashboard/patient-details-dock-action.tsx | sed -n '28,70p'; nl -ba tests/medication-interactions.test.ts | sed -n '60,120p'; nl -ba tests/patient-details-dock-action.dom.test.tsx | sed -n '60,85p'; nl -ba tests/patient-profile-medications.dom.test.tsx | sed -n '55,85p'",{"_881":1147,"_860":861,"_883":867},{"_944":1148,"_45":-5,"_888":1149,"_204":-5,"_947":1150,"_96":949},"call_IIGqfKXzKad2dFW1M4IF39LT",{"_893":867},{"_355":1151,"_951":-5},[1152,1153],{"_49":1155,"_96":955},{"_49":1154,"_96":955},"## codex/pr-interaction-review-fixes\na3d55baf39d2585077ccdc8de3807e9a94a90426\na3d55ba (HEAD -> codex/pr-interaction-review-fixes) fix(medications): fail interaction checks closed\n data/medication-interaction-index.json | 1024 ++++++++++++++------\n scripts/build-medication-interaction-index.ts | 34 +-\n .../patient-details-dock-action.tsx | 17 +-\n .../clinical-dashboard/patient-profile-panel.tsx | 23 +-\n src/lib/medication-interaction-lexicon.ts | 9 +-\n src/lib/medication-interactions.ts | 49 +-\n ...medication-interaction-lexicon-coverage.test.ts | 12 +-\n tests/medication-interactions.test.ts | 32 +-\n tests/patient-details-dock-action.dom.test.tsx | 2 +\n tests/patient-profile-medications.dom.test.tsx | 4 +-\n 10 files changed, 831 insertions(+), 375 deletions(-)\n 125\t}\n 126\t\n 127\t/**\n 128\t * Counterparty clauses after the severity token, excluding explicit mitigation\n 129\t * advice. Interaction rows regularly name additional mechanisms in later\n 130\t * sentences, so truncating at sentence one creates false negatives.\n 131\t *\n 132\t * This is deliberate and load-bearing. Scanning the whole row over-matches:\n 133\t * \"HIGH — NSAIDs and Aspirin. SSRIs deplete platelet serotonin … Cover with PPI\n 134\t * if combined.\" mentions PPIs only as the mitigation, and a patient on a PPI\n 135\t * must not light up as HIGH-interacting. Restricting to the first sentence\n 136\t * keeps the counterparty and drops the advice.\n 137\t */\n 138\tfunction counterpartySegment(value: string): { severityToken: string | null; segment: string } {\n 139\t const match = SEVERITY_PATTERN.exec(value);\n 140\t const severityToken = match ? match[1].trim() : null;\n 141\t const body = (match ? match[2] : value).replace(/\\*\\*/g, \"\").trim();\n 142\t const clauses = body.split(/(?<=[.;])\\s+/).filter((clause) => {\n 143\t return !/^(?:cover|monitor|consider|check|use|avoid|prefer|give|dose|reduce|increase)\\b/i.test(clause);\n 144\t });\n 145\t return { severityToken, segment: clauses.join(\" \") };\n 146\t}\n 147\t\n 148\tfunction main(): void {\n 149\t const checkOnly = process.argv.includes(\"--check\");\n 150\t const snapshotPath = path.resolve(process.cwd(), SNAPSHOT_PATH);\n 151\t const records = JSON.parse(readFileSync(snapshotPath, \"utf8\")) as MedicationRecord[];\n 152\t\n 153\t // Pre-resolve every catalogue term once.\n 154\t const termSlugs = new Map();\n 155\t for (const term of INTERACTION_LEXICON) {\n 156\t if (term.select) {\n 157\t termSlugs.set(term.id, selectCatalogueSlugs(term.select, records));\n 158\t }\n 159\t }\n 160\t\n 161\t // Surface forms for individual catalogue drugs, longest-first so\n 162\t // \"Aripiprazole LAI\" wins over \"Aripiprazole\".\n 163\t //\n 164\t // Catalogue names carry formulation qualifiers the prose never uses: the\n 165\t // catalogue says \"Tramadol IR\" and \"Oxycodone SR / MR\" where an interaction\n 166\t // row just says \"Tramadol\" or \"Oxycodone\". Indexing only the full name silently\n 167\t // loses those matches — a false-negative class, i.e. exactly the direction that\n 168\t // produces a wrong green. So each name also contributes its base form with the\n 169\t // trailing dosage-form tokens stripped.\n 170\t const drugSurfaces = records\n 171\t .flatMap((record) => {\n 172\t const parts = record.name\n 173\t .split(\"/\")\n 174\t .map((part) => part.trim())\n 175\t .filter((part) => part.length >= 4);\n 176\t const surfaces = new Set(parts);\n 177\t for (const part of parts) surfaces.add(stripDosageForm(part));\n 178\t surfaces.add(stripDosageForm(record.name));\n 179\t return Array.from(surfaces)\n 180\t .filter((surface) => surface.length >= 4)\n 181\t .map((surface) => ({ surface, slug: record.slug, name: record.name }));\n 182\t })\n 183\t .sort((a, b) => b.surface.length - a.surface.length);\n 184\t\n 185\t const nameBySlug = new Map(records.map((record) => [record.slug, record.name]));\n 186\t const bySlug: Record = {};\n 187\t let sourceRowCount = 0;\n 188\t let resolvedRows = 0;\n 189\t let unresolvedRows = 0;\n 190\t let rowsWithCatalogueTarget = 0;\n 191\t\n 192\t for (const record of records) {\n 193\t const rows: IndexRow[] = [];\n 194\t\n 195\t for (const section of record.sections ?? []) {\n 196\t if (section.type !== \"inter\") continue;\n 197\t\n 198\t section.rows?.forEach((row, rowIndex) => {\n 199\t sourceRowCount += 1;\n 200\t const value = row.val ?? \"\";\n 201\t const { severityToken, segment } = counterpartySegment(value);\n 202\t const severity = severityToken ? (SEVERITY_BY_TOKEN[severityToken] ?? \"unknown\") : \"unknown\";\n 203\t\n 204\t const counterparties = new Map();\n 205\t const termIds = new Set();\n 206\t let sawClassifiableTerm = false;\n 207\t\n 208\t // 1. Lexicon terms, longest surface first.\n 209\t const consumed: string[] = [];\n 210\t for (const { surface, term } of LEXICON_SURFACES_BY_LENGTH) {\n 211\t if (!mentions(segment, surface)) continue;\n 212\t // A longer surface already covering this text wins (\"thiazide\n 213\t // diuretics\" must not also register the generic \"diuretics\").\n 214\t if (consumed.some((taken) => taken.includes(surface))) continue;\n 215\t consumed.push(surface);\n 216\t termIds.add(term.id);\n 217\t sawClassifiableTerm = true;\n 218\t addTermTargets(term, counterparties, record.slug);\n 219\t }\n 220\t\n 221\t // 2. Individual catalogue drugs named outright.\n 222\t for (const { surface, slug } of drugSurfaces) {\n 223\t if (slug === record.slug) continue; // never self-interact\n 224\t if (!mentions(segment, surface)) continue;\n 225\t sawClassifiableTerm = true;\n 226\t if (!counterparties.has(slug)) {\n 227\t counterparties.set(slug, { slug, name: nameBySlug.get(slug) ?? slug, via: surface });\n 228\t }\n 229\t }\n 230\t\n 231\t // A row is resolved when we could classify what it refers to — either\n 232\t // catalogue targets, or a known external/non-drug entity. A bare\n 233\t // mechanism class (\"CYP3A4 inhibitors\") with no named example is NOT\n 234\t // resolved: it could include catalogue drugs we have not enumerated.\n 235\t const hasUnresolvedMechanism = Array.from(termIds).some((id) => termIsIncomplete(id));\n 236\t const resolved = sawClassifiableTerm && !hasUnresolvedMechanism;\n 237\t\n 238\t if (resolved) resolvedRows += 1;\n 239\t else unresolvedRows += 1;\n 240\t if (counterparties.size > 0) rowsWithCatalogueTarget += 1;\n 241\t\n 242\t rows.push({\n 243\t rowKey: row.key,\n 244\t rowIndex,\n 245\t severity,\n 246\t counterparties: Array.from(counterparties.keys()).sort(),\n 247\t termIds: Array.from(termIds).sort(),\n 248\t resolved,\n 249\t });\n 250\t });\n 251\t }\n 252\t\n 253\t if (rows.length > 0) {\n 254\t bySlug[record.slug] = { rows, unresolvedRowCount: rows.filter((row) => !row.resolved).length };\n 255\t }\n 256\t }\n 257\t\n 258\t function termIsIncomplete(id: string): boolean {\n 259\t const term = INTERACTION_LEXICON.find((candidate) => candidate.id === id);\n 260\t return !term || term.kind === \"mechanism\" || term.incompleteEnumeration === true;\n 261\t }\n 262\t\n 263\t function addTermTargets(term: LexiconTerm, into: Map, sourceSlug: string): void {\n 264\t if (!term.select) return;\n 265\t for (const slug of termSlugs.get(term.id) ?? []) {\n 266\t // A drug is never its own counterparty. Ibuprofen's own row says \"NSAIDs\",\n 267\t // and the class resolves to every NSAID including ibuprofen — which would\n 268\t // make the drug flag itself the moment the patient is taking it.\n 269\t if (slug === sourceSlug || into.has(slug)) continue;\n 270\t into.set(slug, { slug, name: nameBySlug.get(slug) ?? slug, via: term.id });\n 271\t }\n 272\t }\n 273\t\n 274\t const index: InteractionIndex = {\n 275\t version: 1,\n 276\t generatedFrom: SNAPSHOT_PATH,\n 277\t sourceRowCount,\n 278\t stats: {\n 279\t resolvedRows,\n 280\t unresolvedRows,\n 281\t rowsWithCatalogueTarget,\n 282\t medicationsWithUnresolvedRows: Object.values(bySlug).filter((entry) => entry.unresolvedRowCount > 0).length,\n 283\t },\n 284\t names: Object.fromEntries(\n 285\t records.map((record) => [record.slug, record.name] as const).sort(([a], [b]) => a.localeCompare(b)),\n 286\t ),\n 287\t bySlug,\n 288\t };\n 289\t\n 290\t const serialised = `${JSON.stringify(index, null, 2)}\\n`;\n 291\t const outputPath = path.resolve(process.cwd(), OUTPUT_PATH);\n 292\t\n 293\t if (checkOnly) {\n 294\t const current = readFileSync(outputPath, \"utf8\");\n 295\t let currentIndex: unknown;\n 296\t try {\n 297\t currentIndex = JSON.parse(current);\n 298\t } catch {\n 299\t currentIndex = null;\n 300\t }\n 301\t if (JSON.stringify(currentIndex) !== JSON.stringify(index)) {\n 302\t console.error(\n 303\t `[medication-interactions] ${OUTPUT_PATH} is stale.\\n` +\n 304\t \"Run `npm run medications:interactions` and commit the result.\",\n 305\t );\n 306\t process.exit(1);\n 307\t }\n 308\t console.log(`[medication-interactions] ${OUTPUT_PATH} is up to date (${sourceRowCount} rows).`);\n 309\t return;\n 310\t }\n 45\t\n 46\texport type MedicationInteractionResult = {\n 47\t interactions: MedicationInteraction[];\n 48\t counts: Record;\n 49\t /** Highest tone across matched interactions, or null when none matched. */\n 50\t highestTone: SemanticTone | null;\n 51\t /**\n 52\t * Interaction rows on this medication whose counterparty could not be\n 53\t * machine-resolved. Non-zero must suppress any green verdict.\n 54\t */\n 55\t unresolvedRowCount: number;\n 56\t /** Total interaction rows the catalogue carries for this medication. */\n 57\t totalRowCount: number;\n 58\t /** False when the catalogue names the medication but the index has no entry. */\n 59\t dataAvailable: boolean;\n 60\t};\n 61\t\n 62\ttype IndexRow = {\n 63\t rowKey: string;\n 64\t rowIndex: number;\n 65\t severity: string;\n 66\t counterparties: string[];\n 67\t termIds: string[];\n 68\t resolved: boolean;\n 69\t};\n 70\ttype InteractionIndexShape = {\n 71\t version: number;\n 72\t sourceRowCount: number;\n 73\t names: Record;\n 74\t bySlug: Record;\n 75\t};\n 76\t\n 77\tconst INDEX = interactionIndex as unknown as InteractionIndexShape;\n 78\t\n 79\t/** Display name for a catalogue slug, falling back to the slug itself. */\n 80\texport function medicationDisplayName(slug: string): string {\n 81\t return INDEX.names[slug] ?? slug;\n 82\t}\n 83\t\n 84\texport type MedicationOption = { slug: string; name: string };\n 85\t\n 86\tlet cachedOptions: MedicationOption[] | null = null;\n 87\t\n 88\t/**\n 89\t * Every catalogue medication as a pickable `{ slug, name }`, name-sorted.\n 90\t *\n 91\t * Sourced from the interaction index rather than the 3.5 MB catalogue snapshot:\n 92\t * the picker only needs slugs and names, and the index is already loaded on the\n 93\t * surfaces that host the picker.\n 94\t */\n 95\texport function catalogueMedicationOptions(): MedicationOption[] {\n 96\t cachedOptions ??= Object.entries(INDEX.names)\n 97\t .map(([slug, name]) => ({ slug, name }))\n 98\t .sort((a, b) => a.name.localeCompare(b.name));\n 99\t return cachedOptions;\n 100\t}\n 101\t\n 102\t/** True when the slug names a real catalogue medication. */\n 103\texport function isCatalogueMedicationSlug(slug: string): boolean {\n 104\t return Object.hasOwn(INDEX.names, slug);\n 105\t}\n 106\t\n 107\texport const SEVERITY_TONE: Record = {\n 108\t critical: \"danger\",\n 109\t high: \"danger\",\n 110\t moderate: \"warning\",\n 111\t caution: \"warning\",\n 112\t low: \"success\",\n 113\t none: \"success\",\n 114\t safe: \"success\",\n 115\t beneficial: \"success\",\n 116\t // An unparsed severity token must not be optimistic.\n 117\t unknown: \"neutral\",\n 118\t};\n 119\t\n 120\tconst EMPTY_COUNTS: Record = {\n 121\t danger: 0,\n 122\t warning: 0,\n 123\t clinical: 0,\n 124\t success: 0,\n 125\t neutral: 0,\n 126\t info: 0,\n 127\t};\n 128\t\n 129\tconst SEVERITY_ORDER: InteractionSeverity[] = [\n 130\t \"critical\",\n 131\t \"high\",\n 132\t \"moderate\",\n 133\t \"caution\",\n 134\t \"unknown\",\n 135\t \"low\",\n 136\t \"none\",\n 137\t \"safe\",\n 138\t \"beneficial\",\n 139\t];\n 140\t\n 141\tfunction normaliseSeverity(value: string): InteractionSeverity {\n 142\t return (SEVERITY_ORDER as string[]).includes(value) ? (value as InteractionSeverity) : \"unknown\";\n 143\t}\n 144\t\n 145\t/** Total interaction rows the catalogue carries for a medication. */\n 146\texport function interactionRowCount(slug: string): number {\n 147\t return INDEX.bySlug[slug]?.rows.length ?? 0;\n 148\t}\n 149\t\n 150\t/**\n 151\t * Evaluate one medication against the patient's current medication list.\n 152\t *\n 153\t * `patientMedicationSlugs` are catalogue slugs. The source medication is\n 154\t * excluded automatically, so a patient already taking the drug being viewed does\n 155\t * not produce a self-interaction.\n 156\t */\n 157\texport function evaluateMedicationInteractions(\n 158\t slug: string,\n 159\t patientMedicationSlugs: readonly string[],\n 160\t /**\n 161\t * The medication's own record, when the caller has it. Used to recover the\n 162\t * verbatim `Key Interactions` row text by index — that text is deliberately\n 163\t * not duplicated into the generated index (see the build script). Without a\n 164\t * record the interaction still reports correctly, just with an empty `note`.\n 165\t */\n 166\t record?: { sections?: { type: string; rows?: { key: string; val: string }[] }[] } | null,\n 167\t): MedicationInteractionResult {\n 168\t const entry = INDEX.bySlug[slug];\n 169\t if (!entry) {\n 170\t return {\n 171\t interactions: [],\n 172\t counts: { ...EMPTY_COUNTS },\n 173\t highestTone: null,\n 174\t unresolvedRowCount: 1,\n 175\t totalRowCount: 0,\n 176\t dataAvailable: false,\n 177\t };\n 178\t }\n 179\t\n 180\t const patient = new Set(patientMedicationSlugs.filter((value) => value !== slug));\n 181\t const interactions: MedicationInteraction[] = [];\n 182\t const sourceRows = record?.sections?.find((section) => section.type === \"inter\")?.rows ?? [];\n 183\t\n 184\t const addMatches = (\n 185\t sourceSlug: string,\n 186\t rows: IndexRow[],\n 187\t counterpartySlugs: ReadonlySet,\n 188\t reverse = false,\n 189\t ) => {\n 190\t for (const row of rows) {\n 191\t for (const matchedSlug of row.counterparties) {\n 192\t if (!counterpartySlugs.has(matchedSlug)) continue;\n 193\t const counterpartySlug = reverse ? sourceSlug : matchedSlug;\n 194\t const severity = normaliseSeverity(row.severity);\n 195\t interactions.push({\n 196\t id: `${sourceSlug}:${row.rowIndex}:${matchedSlug}`,\n 197\t counterpartySlug,\n 198\t counterpartyName: medicationDisplayName(counterpartySlug),\n 199\t matchedTerms: row.termIds,\n 200\t severity,\n 201\t tone: SEVERITY_TONE[severity],\n 202\t kind: row.rowKey,\n 203\t note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \"\") : \"\",\n 204\t });\n 205\t }\n 206\t }\n 207\t };\n 208\t\n 209\t addMatches(slug, entry.rows, patient);\n 210\t for (const patientSlug of patient) {\n 211\t if (interactions.some((interaction) => interaction.counterpartySlug === patientSlug)) continue;\n 212\t const reverseEntry = INDEX.bySlug[patientSlug];\n 213\t if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]), true);\n 214\t }\n 215\t\n 216\t interactions.sort((a, b) => {\n 217\t const byTone = SEMANTIC_TONE_PRIORITY[b.tone] - SEMANTIC_TONE_PRIORITY[a.tone];\n 218\t if (byTone !== 0) return byTone;\n 219\t const bySeverity = SEVERITY_ORDER.indexOf(a.severity) - SEVERITY_ORDER.indexOf(b.severity);\n 220\t if (bySeverity !== 0) return bySeverity;\n 221\t return a.counterpartyName.localeCompare(b.counterpartyName);\n 222\t });\n 223\t\n 224\t const counts: Record = { ...EMPTY_COUNTS };\n 225\t for (const interaction of interactions) counts[interaction.tone] += 1;\n 226\t\n 227\t return {\n 228\t interactions,\n 229\t counts,\n 230\t highestTone: interactions[0]?.tone ?? null,\n 231\t unresolvedRowCount: entry.unresolvedRowCount,\n 232\t totalRowCount: entry.rows.length,\n 233\t dataAvailable: true,\n 234\t };\n 235\t}\n 236\t\n 237\t// ---------------------------------------------------------------------------\n 238\t// Composition with the physiology engine\n 239\t// ---------------------------------------------------------------------------\n 240\t\n 241\texport type MedicationVerdict = {\n 242\t tone: SemanticTone;\n 243\t /** True when something prevented a complete assessment (grey, not green). */\n 244\t incomplete: boolean;\n 245\t interactionCount: number;\n 112\t * Restricted to catalogue medications on purpose: an interaction can only be\n 113\t * checked against a drug the catalogue actually carries, so accepting free text\n 114\t * would let a clinician enter \"warfarin\", see no alert, and read that as an\n 115\t * all-clear when nothing was ever checked.\n 116\t */\n 117\tfunction MedicationPicker({ selected, onToggle }: { selected: string[]; onToggle: (slug: string) => void }) {\n 118\t const [term, setTerm] = useState(\"\");\n 119\t const listId = useId();\n 120\t\n 121\t const options = catalogueMedicationOptions();\n 122\t const selectedSet = new Set(selected);\n 123\t const query = term.trim().toLowerCase();\n 124\t const matches = query\n 125\t ? options.filter((option) => option.name.toLowerCase().includes(query) && !selectedSet.has(option.slug)).slice(0, 8)\n 126\t : [];\n 127\t\n 128\t return (\n 129\t
\n 130\t Current medications\n 131\t\n 132\t {selected.length > 0 ? (\n 133\t
\n 134\t {selected.map((slug) => (\n 135\t
\n 136\t onToggle(slug)}\n 139\t data-testid={`patient-medication-${slug}`}\n 140\t aria-label={`Remove ${medicationDisplayName(slug)}`}\n 141\t className={cn(segmentBase, segmentActive, \"inline-flex items-center gap-1.5\")}\n 142\t >\n 143\t {medicationDisplayName(slug)}\n 144\t \n 145\t \n 325\t selected={profile.medications ?? []}\n 326\t onToggle={toggleMedication}\n 327\t />\n 328\t\n 329\t
\n 330\t Allergies\n 331\t
\n 332\t {ALLERGY_OPTIONS.map((option) => {\n 333\t const active = allergies.has(option.value);\n 334\t return (\n 335\t toggleAllergy(option.value)}\n 340\t data-testid={`patient-allergy-${option.value}`}\n 341\t className={cn(segmentBase, active ? segmentActive : segmentIdle)}\n 342\t >\n 343\t {option.label}\n 344\t \n 345\t );\n 346\t })}\n 347\t
\n 348\t
\n 349\t\n 350\t
\n 28\texport function PatientDetailsDockAction() {\n 29\t const { profile, isEmpty } = usePatientProfile();\n 30\t const [host, setHost] = useState(null);\n 31\t const [open, setOpen] = useState(false);\n 32\t\n 33\t useEffect(() => {\n 34\t const phoneMediaQuery = window.matchMedia(\"(max-width: 639px)\");\n 35\t let observer: MutationObserver | null = null;\n 36\t const sync = () => {\n 37\t if (!phoneMediaQuery.matches) {\n 38\t observer?.disconnect();\n 39\t observer = null;\n 40\t setHost(null);\n 41\t return;\n 42\t }\n 43\t setHost(document.getElementById(patientDetailsAddonSlotId));\n 44\t if (!observer) {\n 45\t observer = new MutationObserver(sync);\n 46\t observer.observe(document.body, { childList: true, subtree: true });\n 47\t }\n 48\t };\n 49\t sync();\n 50\t phoneMediaQuery.addEventListener(\"change\", sync);\n 51\t // The dock (and therefore the slot) mounts and unmounts with the composer,\n 52\t // so watch for it rather than assuming it exists on first paint.\n 53\t return () => {\n 54\t phoneMediaQuery.removeEventListener(\"change\", sync);\n 55\t observer?.disconnect();\n 56\t };\n 57\t }, []);\n 58\t\n 59\t // Count the entered dimensions, not just the medications, so the badge means\n 60\t // \"how much context is loaded\" rather than \"how many drugs\".\n 61\t const enteredCount = countEnteredFields(profile);\n 62\t\n 63\t const sheet = (\n 64\t setOpen(false)}\n 67\t title=\"Patient details\"\n 68\t description=\"Anonymous physiology and current medications. Cleared when the tab closes.\"\n 69\t mobilePlacement=\"bottom\"\n 70\t testId=\"patient-details-sheet\"\n 60\t });\n 61\t\n 62\t it(\"carries the unresolved row count for a medication the parser could not fully read\", () => {\n 63\t // Bupropion's CYP2D6-substrate row has no enumerable counterparty.\n 64\t const result = evaluateMedicationInteractions(\"bupropion-sr\", []);\n 65\t expect(result.unresolvedRowCount).toBeGreaterThan(0);\n 66\t expect(result.totalRowCount).toBeGreaterThanOrEqual(result.unresolvedRowCount);\n 67\t });\n 68\t\n 69\t it(\"matches methadone's later CNS-depressant clause against diazepam\", () => {\n 70\t const result = evaluateMedicationInteractions(\"methadone\", [\"diazepam\"]);\n 71\t expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n 72\t expect(result.highestTone).toBe(\"danger\");\n 73\t });\n 74\t\n 75\t it(\"matches cetirizine's sedative mechanism but keeps the row incomplete\", () => {\n 76\t const result = evaluateMedicationInteractions(\"cetirizine\", [\"diazepam\"]);\n 77\t expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n 78\t expect(result.unresolvedRowCount).toBeGreaterThan(0);\n 79\t });\n 80\t\n 81\t it(\"finds a reverse naltrexone edge when considering buprenorphine-naloxone\", () => {\n 82\t const result = evaluateMedicationInteractions(\"buprenorphine-naloxone\", [\"naltrexone\"]);\n 83\t expect(result.interactions.some((item) => item.counterpartySlug === \"naltrexone\")).toBe(true);\n 84\t expect(result.highestTone).toBe(\"danger\");\n 85\t });\n 86\t\n 87\t it(\"treats missing index data as incomplete rather than green\", () => {\n 88\t const result = evaluateMedicationInteractions(\"not-a-real-drug\", [\"sertraline\"]);\n 89\t expect(result.interactions).toHaveLength(0);\n 90\t expect(result.totalRowCount).toBe(0);\n 91\t expect(result.dataAvailable).toBe(false);\n 92\t expect(result.unresolvedRowCount).toBe(1);\n 93\t expect(\n 94\t composeMedicationVerdict({\n 95\t considerationTone: null,\n 96\t considerationCount: 0,\n 97\t unassessedCount: 0,\n 98\t interactionTone: result.highestTone,\n 99\t interactionCount: 0,\n 100\t unresolvedRowCount: result.unresolvedRowCount,\n 101\t }).tone,\n 102\t ).toBe(\"neutral\");\n 103\t expect(interactionRowCount(\"not-a-real-drug\")).toBe(0);\n 104\t });\n 105\t\n 106\t it(\"names counterparties from the index, falling back to the slug\", () => {\n 107\t expect(medicationDisplayName(\"tramadol-ir\")).toBe(\"Tramadol IR\");\n 108\t expect(medicationDisplayName(\"not-a-real-drug\")).toBe(\"not-a-real-drug\");\n 109\t });\n 110\t\n 111\t it(\"maps every severity to a tone, and never maps an unknown severity to success\", () => {\n 112\t expect(SEVERITY_TONE.critical).toBe(\"danger\");\n 113\t expect(SEVERITY_TONE.moderate).toBe(\"warning\");\n 114\t expect(SEVERITY_TONE.low).toBe(\"success\");\n 115\t expect(SEVERITY_TONE.unknown).toBe(\"neutral\");\n 116\t });\n 117\t});\n 118\t\n 119\tdescribe(\"composeMedicationVerdict\", () => {\n 120\t const base = {\n 60\t\n 61\t it(\"renders nothing when the dock exposes no slot\", () => {\n 62\t renderAction();\n 63\t expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n 64\t });\n 65\t\n 66\t it(\"renders nothing above the phone breakpoint, where the panel is already inline\", () => {\n 67\t const observe = vi.spyOn(MutationObserver.prototype, \"observe\");\n 68\t setPhoneViewport(false);\n 69\t mountSlot();\n 70\t renderAction();\n 71\t\n 72\t expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n 73\t expect(observe).not.toHaveBeenCalled();\n 74\t });\n 75\t\n 76\t it(\"is a real button that opens the patient sheet\", () => {\n 77\t mountSlot();\n 78\t renderAction();\n 79\t\n 80\t const action = screen.getByTestId(\"patient-details-dock-action\");\n 81\t expect(action).toHaveAttribute(\"type\", \"button\");\n 82\t expect(action).toHaveAttribute(\"aria-haspopup\", \"dialog\");\n 83\t expect(action).toHaveAttribute(\"aria-expanded\", \"false\");\n 84\t\n 85\t fireEvent.click(action);\n 55\t it(\"removes a medication when its chip is activated again\", () => {\n 56\t renderPanel();\n 57\t\n 58\t fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n 59\t fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n 60\t fireEvent.click(screen.getByTestId(\"patient-medication-sertraline\"));\n 61\t\n 62\t expect(storedProfile().medications).toEqual([]);\n 63\t expect(screen.queryByTestId(\"patient-medication-sertraline\")).not.toBeInTheDocument();\n 64\t });\n 65\t\n 66\t it(\"gives the remove control a name that survives without the icon\", () => {\n 67\t renderPanel();\n 68\t fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n 69\t fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n 70\t\n 71\t expect(screen.getByTestId(\"patient-medication-sertraline\")).toHaveAttribute(\"aria-label\", \"Remove Sertraline\");\n 72\t });\n 73\t\n 74\t it(\"offers nothing for a drug outside the catalogue, and says why\", () => {\n 75\t renderPanel();\n 76\t\n 77\t fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"warfarinx\" } });\n 78\t\n 79\t expect(screen.getByText(/Only medications in this catalogue can be interaction-checked/i)).toBeInTheDocument();\n 80\t });\n 81\t\n 82\t it(\"drops the medication list and the search term on Clear\", () => {\n 83\t const consoleError = vi.spyOn(console, \"error\").mockImplementation(() => undefined);\n 84\t renderPanel();\n 85\t fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n","Script completed\nWall time 0.7 seconds\nOutput:\n",{"_881":1157,"_860":861,"_883":867},{"_944":1148,"_45":1158,"_972":1159,"_888":1160,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd881b7808193aa9fd97d516894d3","const r = await tools.exec_command({cmd:\"git status --short --branch; git rev-parse HEAD; git show --stat --oneline --decorate HEAD; nl -ba scripts/build-medication-interaction-index.ts | sed -n '125,310p'; nl -ba src/lib/medication-interactions.ts | sed -n '45,245p'; nl -ba src/components/clinical-dashboard/patient-profile-panel.tsx | sed -n '112,145p;325,350p'; nl -ba src/components/clinical-dashboard/patient-details-dock-action.tsx | sed -n '28,70p'; nl -ba tests/medication-interactions.test.ts | sed -n '60,120p'; nl -ba tests/patient-details-dock-action.dom.test.tsx | sed -n '60,85p'; nl -ba tests/patient-profile-medications.dom.test.tsx | sed -n '55,85p'\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":1162,"_860":861,"_883":867},{"_884":-5,"_905":1163,"_45":1164,"_888":1165,"_909":1166,"_96":911},"gAAAAABqfNiB5cIReAaFn4q-W7nj_djunREwxfHECbbybzXtRLR79idotcSbgrqVr8UGUrijreUqBKvmC0nK5XAsDu2s-ftDOVM-m0jRXTv5mJx5TqxtkqZUrsQUaYyugNvJ55E-lWbHZNFk5Cukg5PoyfjwZYGzUOBxN1GchODPa14ewPwFhLCEjsh2peSXjYUEmMsOrV7zkqUSVv6CF8oS3Z8OtDapOHZAxulDUtNljMIqoaPYQmNGLtU-tn2fUNr7d3ZBD3hs1ltR45bK-AQlPLY11ZwK96ugH9c1rJ5TNZaDDrG-kTGVewXNG834uEq14clRtV4uEUtU-yz6KXYCrCIdNqdozurLhRmqyJA_yp8htXm1YFrriavortJ0p_XLDd_qXAIE5lZugLrcD-XRPQAXsfX2aQuM8lZU_RDTxUPJvMlSmNYMsL23rC24B6yeJYc-mAi9XZ1qAy9X2jAesD2mS8qbXpzkyhuEdeMyr9ZG45d6MVv40oFCJafmdCO1PcLj3NHIzDzl-TlA3CA_cvGH1Ou-4mYMt4LcDKGg8fiBjEKbIhBBwEC-n6u4M-Xanmhb9y0swzvPiCQV4dXA0Zjb7uCY3ga7OFFo20qviUw087PP5VBDdIp3FSOgiRF3vD_HOIwTYAt97G4WPHOKgy08G_iZx_5heZO1Bo6RVmShaGETDGiuU2YRX7McsHs5i8wMyzCeg56U6X6sXtpuq-qxtKq1QIipnaIK3K1XMO3tNGWuGyj6tkcy8eFbxdiBl5yCWpBs1gBHfteAlIU2GbklaRPzMAYSf5biV5WFMaD6QfDE_p2CFJd0IlTcNb4pDJScWuEyiNXN3E0YaMcFvKxfgPwLwzm6Ly9d2eUsWaFQFE1NErd_LzN8o4bvdNeAJUFHJzaI7fxpSo68Zrmv8RssW46-GComBAlWTD5zpWYCHVJzYDqAjW2i8dbdcsfbaA-zxV5nOb2hg_LWHPgwiNlfLaWM9ASZA_vaxIxLRr6EKVnndMvIi8xCP7XwknIMTLAaS1-pplSxoNk1jiaIRZ2ih7luFEdnpGA0du8VOqfcBlcsTbDv2-GdVgD6UzQuwwZPedWCW-s6ydW_Z9QoV3yp19WwsDy9sDARNH6-PHqSjkNWq7rLPHazFKKC9rUOiVI2k9FKuKBiFBSOU4CGi6BL6YNDAHEDz9vsPi0Mj75RqIsPuQNkQblRp8W9-4cvrGCWNQi8PQNRNe2cI-JBbdZWyZp-AB7-F3N36u4PKBi9tCD9jvWAAW51cc0l-DUDdh-KnPZltTEgtEs0ucgSi5_SdRR-ZJ7ckhPThC8UkPv2TR3jepJPcUzge95oHFKMhj2zIuuVHL2-oy6V5IRVVe1os680y0XgBlxfKsHd8Dx-yp_H14NGr0419s2YxZSzeNOWUQh2PKRv7AKG_-H_Y-5BrjGhiHaVJ2mKgAokYbntHVigSqHY9lC7dCbzy0ah5xLjLC9WMX_OU_eG1pTCLC8a81ZeVnqYGL-5ahItGg61sE70moYR6pBOPD5EvSYHrIlrP0u26jN3Xy3m0St_sp1xFPBDtkZFVP9Y5wv4qNqq0H2V30Gx4dU-UhLgC_8V-Tu4hY2tXK2xqUJ63CgXeKtKJSc1SrFF9iM8-Z0pzhztKAJto1Ac9Z_xb6-wpwwfxiwQnjoPqHLZF6jKQpuZntM1N9p8HKiHlVYUROYJzUM3qc3Cjvm0VC7PyJSFK4i4b_yBaqHIKZ6bTaW01rGWDnGDTYi072t6ganY3TxMt5wXU7yp7UU=","rs_0e577ca7e8f114c6016a7cd87ee9708193bdae05d52c64dafe",{"_893":867},[1167],{"_49":1168,"_96":914},"**Assessing commit push limitations**",{"_899":1170,"_881":1171,"_860":861,"_883":867},1786566785695,{"_884":1172,"_45":1164,"_909":1173,"_96":911},[],[1168],{"_899":1175,"_881":1176,"_860":861,"_883":867},1786566776150,{"_923":1177,"_925":1178,"_927":1179,"_929":930,"_865":1180,"_932":35,"_45":1181,"_934":1182,"_936":937,"_874":117,"_96":938},"You are not logged into any GitHub hosts. To log in, run: gh auth login\n","/bin/bash -lc 'gh auth status 2>&1 || true'",[1183],363,"exec-5ea427c8-7d8a-48dc-a26f-e5e3cc478365","66191",{"_925":1184,"_96":941},"gh auth status 2>&1 || true",{"_881":1186,"_860":861,"_883":867},{"_944":1187,"_45":-5,"_888":1188,"_204":-5,"_947":1189,"_96":949},"call_aAPILjQtA9j6WE7GTMLPktY3",{"_893":867},{"_355":1190,"_951":-5},[1191,1192],{"_49":1193,"_96":955},{"_49":1177,"_96":955},"Script completed\nWall time 0.6 seconds\nOutput:\n",{"_881":1195,"_860":861,"_883":867},{"_944":1187,"_45":1196,"_972":1197,"_888":1198,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd876c42481938d6b0b1ae2b5ad10","const r = await tools.exec_command({cmd:\"gh auth status 2>&1 || true\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":5000});\ntext(r.output);\n",{"_893":867},{"_881":1200,"_860":861,"_883":867},{"_884":-5,"_905":1201,"_45":1202,"_888":1203,"_909":1204,"_96":911},"gAAAAABqfNh2FAy2gvHuvPHG7YC74Tl-KZjb_PsRlivs_1NNm-iqCbzRBePcp7RHrO8yWSB34165GMtr6RLNPJ68VoF0IdLfn5PJUqzxtxPYs8_o-inZHvY12gFaGBA9PqJFwDFaBRJCHp7cMxsu3mXV017BM0HHc0xTrLDO1lxRcoFGGUAZQikBmHccMP8F59B03pfl_rSXc8HPnpp4QRQBZByTE44LTTJPURKIDVRW7LaXj6wEsyAj0DTWJLGqmmDMCS8lTF30Hl9lZiIejKvg4_E35swBCQ4piL84u6J8uDOS9GyGJdamrTmEbnpaWrQ0ZHGZhF1FBNvr0xIE6vm9Nb7ZfUCcbonGJJ6HhHRNC7OuNOeEAbLVZNFqF63t9zO8VOJK4cNjnvrokDwvTNYWXhajkfwyrXc1aI-OBDsOX2is-C7D-zRctSFYz7RH3MHlAYy3HVD8XXiRJMxJLq6P0TA1D0QSi3Oel4ilLOM-63r12XzRSHCSAzmPHPmqrTNShejcwyiR3IgWYOYH0Cc9vc9k9LlzSQmKv7O-1ZzqlamnK_shAAZsQ-TP6cvzcUNfseQaqlhlRzeZ6H7y8tT3xaGFn3UaxRNwSeGRqO6tsTh1J7sDPbLPAOyKv2cgtnTilH4RwaQq-567yqVHsx7NX-io2nJ1O--DNbRPVw9HNikLHlpEXwBvWi2GNCV953IrtMLODrhvExIV5Asm5G8oMY1ftkI2t8Js4Rv8w0EuCX78UdoURHN7tlT2mkazSRW0FWo3FRoZU6zgmcJJfSeguEg0px4vMFq8SYfeW2TZFbaubUL71fKW2qTs-bmjwDXKqpxT_8JMHfIxS9CgPjAfKNRZ-NbYdjj2Z-e5dHgmK1dJIA-2PcfU0c-tx-2QN7_Z_shpMPNBl_l8MZqhsFn8DerdEYAG06F-U8qBSi1YGb-siYa1RC7OQV7DYENK6UXw6RvfdK-RCB0vfX1nD_GDpVipqXz2TGDbxZSHXHzigUg7d4Lyc8ctoJBFYXpOJVniBPsr7b4w","rs_0e577ca7e8f114c6016a7cd875e4cc8193bb523bf8e374f281",{"_893":867},[1205],{"_49":1206,"_96":914},"**Verifying GitHub CLI authentication status**",{"_899":1208,"_881":1209,"_860":861,"_883":867},1786566774750,{"_884":1210,"_45":1202,"_909":1211,"_96":911},[],[1206],{"_899":1213,"_881":1214,"_860":861,"_883":867},1786566772345,{"_923":1215,"_925":1216,"_927":1217,"_929":930,"_865":1218,"_932":1219,"_45":1220,"_934":1221,"_936":937,"_874":966,"_96":938},"fatal: could not read Username for 'https://github.com': No such device or address\n","/bin/bash -lc 'git push -u origin codex/pr-interaction-review-fixes'",[1222],483,128,"exec-f2064f21-36e2-400f-870a-de5dacadf6a6","99520",{"_925":1223,"_96":941},"git push -u origin codex/pr-interaction-review-fixes",{"_881":1225,"_860":861,"_883":867},{"_944":1226,"_45":-5,"_888":1227,"_204":-5,"_947":1228,"_96":949},"call_2oUlw5lfiKdrIqbbtD8IHTcf",{"_893":867},{"_355":1229,"_951":-5},[1230,1231],{"_49":1155,"_96":955},{"_49":1215,"_96":955},{"_881":1233,"_860":861,"_883":867},{"_944":1226,"_45":1234,"_972":1235,"_888":1236,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd87280c48193a4e410048ff98558","const r = await tools.exec_command({cmd:\"git push -u origin codex/pr-interaction-review-fixes\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":10000});\ntext(r.output); if (r.session_id) text(`SESSION_ID=${r.session_id}`);\n",{"_893":867},{"_881":1238,"_860":861,"_883":867},{"_884":-5,"_905":1239,"_45":1240,"_888":1241,"_909":1242,"_96":911},"gAAAAABqfNhyerA0fBHWI2VIeWq05BG4i8-vC8edDqhhnmK3acI-1UuyUAAwNkFJ4_4Z_caLMkqgzLlsbPxSkosm-XrnOMYN7J5-XniskldN2n8pM2uzGbf0NAD2nLDSzy2qplT2BZwZWIhbh98KN3UC3eyad3HuJBHMU4QJz7efVcPROJ6rpEZm-Qu3HmA7H1XzJPLU_5-GFCEg1RmiJkSmkXxGO9G9H4ZhGprV5aEzsTE3qam4ks2_vkEKq5-isTofDWJ-7q6aGLutSdWxxOi31od0Gx5ao5_HAOZnXk8RvlOzUIWkkEVo_8tqSkIS2rotk-adU10UqF4r7xRIK5TqcJVkpOgdX-Ref3Hs5K_w28RTlN4RitbniccW9sWkvupn1hyScXrx8yEUGvCTH3rasAQPvvFXIAEpmAaXx0sKe284shsMsPtqZ-zsCbzo7uzl6PfD2b9vN9JfRFEf5CzE19UfhKXiymJr5QY5akYOttWCxPYdvPw9TMbQHp59hjtDjX_0xTuQzPFGi9ZU3wWx8aFUd6ZKKbnA1qyCOIwdQ1k3-STJ8rly6Yl9sbwxzd3gxfv7I_5yIsdvXjOpdDGx5Bgocofi9B_HCV7zx_3lpGOqAdwY5N0YxYrYPbbNRuEClwMPACJtSlD4REUJR0wHaqiKO5u-Po4v46Fa6TMes87TPBhDe-LOzc6ZFTQHCbXtQuyLwxxYvd8MrTudttJaLv7iwC7Dr8W-yVZ79JQhIJD6srr9HNMWl2hIoI3pGIkVV_p8TC6XJiKfkCLAn0CQJx68oRZFRFW4k9D7DkUeZJOieEDXVFLj0pTWSrojKFxxZBC4gpwkgm2q_6sUUR65Bp3sxYQa179gMr3bQ8lQFn_rmal3qsQ36fHY-LzATZCw3XKOW3-lqrrgW6_0yN2Jk9VVRBv3tx99nfXOXzxAx8INIVGoGDo9-VOfK7DtHiA-ed1OnjhOBYyjo4xb4V_DHcaBjimNdyjDmF-CeuI9Rq8rzONM1Cw8MqY_lMwCLMpQeBv1x5ucnZGCASkpLPUXKrkrsNPMBm73yqrzH44dCeVHMTp2G0DV3cluAftTVrIsQ4tq6MRYVhm9XG7x3dgR7_UDqeNvfbfHpjO13wuBevcbPpvfbOw=","rs_0e577ca7e8f114c6016a7cd87182388193bbeb14d553725409",{"_893":867},[1243],{"_49":1244,"_96":914},"**Preparing code push before PR creation**",{"_899":1246,"_881":1247,"_860":861,"_883":867},1786566770483,{"_884":1248,"_45":1240,"_909":1249,"_96":911},[],[1244],{"_881":1251,"_860":861,"_883":867},{"_944":1252,"_45":-5,"_888":1253,"_204":-5,"_947":1254,"_96":949},"call_U4FNkt2uBJQZiTflfcgJpRMS",{"_893":867},{"_355":1255,"_951":-5},[1256,1257],{"_49":1259,"_96":955},{"_49":1258,"_96":955},"## codex/pr-interaction-review-fixes\na3d55baf39d2585077ccdc8de3807e9a94a90426 fix(medications): fail interaction checks closed\n","Script completed\nWall time 6.5 seconds\nOutput:\n",{"_899":1261,"_881":1262,"_860":861,"_883":867},1786566767250,{"_923":1258,"_925":1263,"_927":1264,"_929":930,"_865":1265,"_932":35,"_45":1266,"_934":1267,"_936":937,"_874":117,"_96":938},"/bin/bash -lc \"while ps -p 123130 >/dev/null; do sleep 3; done; git status --short --branch; git log -1 --format='%H %s'\"",[1268],6302,"exec-10a9f290-4ad6-4e9a-9a6b-fa13aa39b110","74676",{"_925":1269,"_96":941},"while ps -p 123130 >/dev/null; do sleep 3; done; git status --short --branch; git log -1 --format='%H %s'",{"_899":1271,"_881":1272,"_860":861,"_883":867},1786566764856,{"_923":1258,"_925":1273,"_927":1274,"_929":930,"_865":1275,"_932":35,"_45":1276,"_934":1277,"_936":937,"_874":117,"_96":938},"/bin/bash -lc \"while ps -p 123130 >/dev/null; do sleep 2; done; git status --short --branch; git log -1 --format='%H %s'\"",[1278],42099,"exec-ebfee9d0-80a1-42f5-b878-9276d2067b37","95150",{"_925":1279,"_96":941},"while ps -p 123130 >/dev/null; do sleep 2; done; git status --short --branch; git log -1 --format='%H %s'",{"_899":1281,"_881":1282,"_860":861,"_883":867},1786566764223,{"_923":1283,"_925":1284,"_927":1285,"_929":930,"_865":1286,"_932":35,"_45":1287,"_934":1288,"_936":937,"_874":117,"_96":938},"codex@openai.com\nSwitched to a new branch 'codex/pr-interaction-review-fixes'\n[pre-commit] Synchronizing generated documentation...\nDocs inventory current: 228 script files, 239 npm scripts.\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-inventory\n> node scripts/update-docs-inventory.mjs --check\n\nDocs inventory current: 228 script files, 239 npm scripts.\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-index\n> node scripts/check-codebase-index-coverage.mjs\n\ndocs/codebase-index.md coverage OK: all 50 repository roots/modules/routes and all schema tables are indexed.\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 design-system:adoption:update\n> node scripts/generate-design-system-adoption.mjs --write\n\ndesign-system adoption updated: 54 components, 59 roots\n[pre-commit] Documentation is synchronized.\n[codex/pr-interaction-review-fixes a3d55ba] fix(medications): fail interaction checks closed\n 10 files changed, 831 insertions(+), 375 deletions(-)\n","/bin/bash -lc 'command -v make_pr || true; command -v gh || true; git config --get user.name; git config --get user.email; git switch -c codex/pr-interaction-review-fixes && git add data/medication-interaction-index.json scripts/build-medication-interaction-index.ts src/components/clinical-dashboard/patient-details-dock-action.tsx src/components/clinical-dashboard/patient-profile-panel.tsx src/lib/medication-interaction-lexicon.ts src/lib/medication-interactions.ts tests/medication-interaction-lexicon-coverage.test.ts tests/medication-interactions.test.ts tests/patient-details-dock-action.dom.test.tsx tests/patient-profile-medications.dom.test.tsx && git commit -m \"fix(medications): fail interaction checks closed\"'",[1289],85935,"exec-4ece6b22-4fb3-43bd-9bd1-c7bafd6b7008","32417",{"_925":1290,"_96":941},"command -v make_pr || true; command -v gh || true; git config --get user.name; git config --get user.email; git switch -c codex/pr-interaction-review-fixes && git add data/medication-interaction-index.json scripts/build-medication-interaction-index.ts src/components/clinical-dashboard/patient-details-dock-action.tsx src/components/clinical-dashboard/patient-profile-panel.tsx src/lib/medication-interaction-lexicon.ts src/lib/medication-interactions.ts tests/medication-interaction-lexicon-coverage.test.ts tests/medication-interactions.test.ts tests/patient-details-dock-action.dom.test.tsx tests/patient-profile-medications.dom.test.tsx && git commit -m \"fix(medications): fail interaction checks closed\"",{"_881":1292,"_860":861,"_883":867},{"_944":1252,"_45":1293,"_972":1294,"_888":1295,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd8674fec8193af85416895f2311b","const r = await tools.exec_command({cmd:\"while ps -p 123130 >/dev/null; do sleep 3; done; git status --short --branch; git log -1 --format='%H %s'\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":10000});\ntext(r.output);\n",{"_893":867},{"_881":1297,"_860":861,"_883":867},{"_884":-5,"_905":1298,"_45":1299,"_888":1300,"_909":1301,"_96":911},"gAAAAABqfNhnAXlRmq9Ta4r2scDQXAJEj7AZjqH8r2Cgasbs4C2wCN7cG4-NtIcrc_iFQ9DOPXGXnnfPeytGOjtbM_FJ167FDc3hcAvXu_IGwTEvs0UX-IdBSCWgX22iwgtjrsST6o_F0bfBTwSiqOr9-U0NPgvNweSu50FUwpS4xn_XMEQjQocE78WspYN93IJGfR-CfW1rlGWryT_bFwmcz9ElL0yZ0vDC6U6kWOgRGkDc80O5HgRC7SCccfmdTwVjvrMf2gaCgYZ48zgfVN7jXzRDcwF1xBeKIrnn8Hv-hoQPtpEDEdye-tbhnRb2t-85tZuDkV3dFpn_qPDsUhrXq7aEvt0lks3S7F_uW0P7XGluyEgTnWlLLqY6yCFVneHUfFtSwSzHn1aBYzV4zL3IyKlFM6deBV8-fQyRIzJl6Ygiy2w6hwDDYgCLqZRwdx5VCjhFI1A2u2Ot6-VeiqnylsYcstEWrtz2sfYpl6sRc2qI6ololnxceViswjX9nOS1qvf2kKV5FnEbbcCJNQ97KZc_teWZyt8v1j1DP4RJsmPFpc7qZFTXQVipXgKa2k9jvYZcPIdF9ee1lCBTDTpwHkERvD_ORMw_etyTDs8sZzusFz8UTE7WNxzEme9S1n8-_DWU1V8drC8fFWMCUgzZEmJ3f08FcHF6kS71Dq5XIl-DiipCYyVCSQHlv98jmfnYLR4vlpiagfZ1QtKm8cbu9Zjf-OFFZL2b6manYGl7xqh1zFuCyXoHhJTBS30aqgycpN7uQ2fyg6K3kzAm5LLARzdPbmMVw-gxOAmQv7ilZj1Bpvg5y1MS4wq7isRX99MN-ewHlTvtoz8MJXo7UOYD3HHqazBLJPBCS_vP_Qtbmuei4oFviOCyeGuEPwj7Yv51hyEPIoATNpbKcgofEktu37hq_YKYE0Jnpynw1981XbWoORUDWOQ=","rs_0e577ca7e8f114c6016a7cd866d51c8193ae7f854bd153e703",{"_893":867},[],{"_899":1303,"_881":1304,"_860":861,"_883":867},1786566759294,{"_884":1305,"_45":1299,"_909":1306,"_96":911},[],[],{"_899":1308,"_881":1309,"_860":861,"_883":867},1786566757346,{"_923":1310,"_925":1311,"_927":1312,"_929":930,"_865":1313,"_932":35,"_45":1314,"_934":1315,"_936":937,"_874":117,"_96":938}," PID ELAPSED CMD\n 123130 01:18 git commit -m fix(medications): fail interaction checks closed\n PID ELAPSED CMD\n 128668 00:28 npm run design-system:adoption:update\n","/bin/bash -lc 'ps -p 123130 -o pid,etime,cmd; ps --ppid 123144 -o pid,etime,cmd | tail'",[1316],206,"exec-9da09c06-d57b-4020-99d4-bb5dfceb8003","15184",{"_925":1317,"_96":941},"ps -p 123130 -o pid,etime,cmd; ps --ppid 123144 -o pid,etime,cmd | tail",{"_881":1319,"_860":861,"_883":867},{"_944":1320,"_45":-5,"_888":1321,"_204":-5,"_947":1322,"_96":949},"call_1Jjob9TOIkoqdJkTzzFRAPHT",{"_893":867},{"_355":1323,"_951":-5},[1324,1325],{"_49":1193,"_96":955},{"_49":1310,"_96":955},{"_881":1327,"_860":861,"_883":867},{"_944":1320,"_45":1328,"_972":1329,"_888":1330,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd86345548193ac50c659b8205844","const r = await tools.exec_command({cmd:\"ps -p 123130 -o pid,etime,cmd; ps --ppid 123144 -o pid,etime,cmd | tail\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":3000});\ntext(r.output);\n",{"_893":867},{"_881":1332,"_860":861,"_883":867},{"_944":1333,"_45":-5,"_888":1334,"_947":1335,"_96":1055},"call_1qzHKMmCgsiYfW8h9ytMIjyZ",{"_893":867},{"_355":1336,"_951":-5},[1337,1338],{"_49":1339,"_96":955},{"_49":341,"_96":955},"Script completed\nWall time 18.1 seconds\nOutput:\n",{"_881":1341,"_860":861,"_883":867},{"_1063":1342,"_944":1333,"_45":1343,"_888":1344,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"84\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd84e3bc08193908bc7e806aab3a2",{"_893":867},{"_881":1346,"_860":861,"_883":867},{"_944":1347,"_45":-5,"_888":1348,"_204":-5,"_947":1349,"_96":949},"call_Wj6xivA9U4QyTFFN3d4PHzc3",{"_893":867},"Script running with cell ID 84\nWall time 10.1 seconds\nOutput:\n",{"_881":1351,"_860":861,"_883":867},{"_944":1347,"_45":1352,"_972":1353,"_888":1354,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd840fddc819396623cebef72cfa5","const r = await tools.exec_command({cmd:\"while ps -p 123130 >/dev/null; do sleep 2; done; git status --short --branch; git log -1 --format='%H %s'\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":10000});\ntext(r.output);\n",{"_893":867},{"_881":1356,"_860":861,"_883":867},{"_884":-5,"_905":1357,"_45":1358,"_888":1359,"_909":1360,"_96":911},"gAAAAABqfNhAsb_HBvbhgru0LzfOHH8ZNNSiYhQi-l3OTuuNyx0-u3K0a1PB8qbBdP0ecrXLxfzbV6R_eHqvcctVigTkBnfYkF1E7cCivfmO930oEPmP0-ewqD_1ePJ3ig_ato7wkGZsPVlxC2TLTcbidFid8w7t91K2-t3W1ZVdh_hNGTWIMcy54LaJGRYQ88fu97UQpCjuV-N8nvujDAUJ6JjSXF4DxtmYVb1d6fKwqxT9hvn0ZbKM_ptcVOGB7GEf8Y6D0G58M72s-8QRBs38lPZ_uqUcOahQiZ2irlkEWbP-Df6gK4hUlZUxKZGj_7O2pG0db0Em_I4Ka8dRTeKAwYIwdftPQ8NcMUwTNSvpw0deTVbVblZYCmWmRTHo10zc7pFuMnon8lgbBg66SAThPL2a34voxw90ZZIwvFtCddY-BQaWhmc-gOV0NIao-uraFQ2SwuNlFVElUyGeEVWt616aFsoFvnozP_cyHRG0_g0kXHcR6YubdyVXNW24t0rH5301cuk2PId144rq0mUOhyKDvaWImHz2-0Z09kdOhTyd6YB7bTMUJ6ngvcdQ8mFNPaAPu-WJFq3boqmeK-eelfKaffSFwlFIntXswAeUoQaLaMhkLjioDfNc86LNN8WuRcYRf42Zf1znIia6ZiSR0EXec7oBAJz6Cp1u7NTZ2JI1RyMEKC7HfZ6CvEQV-pgmexhNI-e30XLNvVvP0DtWB_4weWF7v1JGG9_hPOyh6vvnq1-b-nlFYG_MJ4R8YBeG3uIoFyTCWv0TuJ2hqW9UYk9kTEYXApDVkZ381_59_Fqk0-sxqSZB6WQUkf_zcEPJMlgeUnjx1059RvyyrkMcKxlVsPdjvWEWbdvNE8EXob8Ihz2O6SP_v4yVgF5FBSOnMX6ZWcoBu8aFU1l7mxNQVtcBrj6k6B_rTF49aD4FacB6_B2jbYc=","rs_0e577ca7e8f114c6016a7cd84088e081938f00d63e5ac3cea9",{"_893":867},[],{"_899":1362,"_881":1363,"_860":861,"_883":867},1786566720984,{"_884":1364,"_45":1358,"_909":1365,"_96":911},[],[],{"_899":1367,"_881":1368,"_860":861,"_883":867},1786566718253,{"_923":1369,"_925":1370,"_927":1371,"_929":930,"_865":1372,"_932":35,"_45":1373,"_934":1374,"_936":937,"_874":117,"_96":938},"root 111673 1 0 20:29 ? 00:00:01 /root/.nvm/versions/node/v24.19.0/bin/node --experimental-import-meta-resolve --require /workspace/Database/node_modules/vitest/suppress-warnings.cjs --conditions node --conditions development /workspace/Database/node_modules/vitest/dist/workers/forks.js\nroot 123107 18520 0 20:31 ? 00:00:00 /bin/bash -c command -v make_pr || true; command -v gh || true; git config --get user.name; git config --get user.email; git switch -c codex/pr-interaction-review-fixes && git add data/medication-interaction-index.json scripts/build-medication-interaction-index.ts src/components/clinical-dashboard/patient-details-dock-action.tsx src/components/clinical-dashboard/patient-profile-panel.tsx src/lib/medication-interaction-lexicon.ts src/lib/medication-interactions.ts tests/medication-interaction-lexicon-coverage.test.ts tests/medication-interactions.test.ts tests/patient-details-dock-action.dom.test.tsx tests/patient-profile-medications.dom.test.tsx && git commit -m \"fix(medications): fail interaction checks closed\"\nroot 123130 123107 0 20:31 ? 00:00:00 git commit -m fix(medications): fail interaction checks closed\nroot 123144 123130 0 20:31 ? 00:00:00 /bin/sh .githooks/pre-commit\nroot 126312 123144 5 20:31 ? 00:00:00 bash /root/.local/bin/node /root/.nvm/versions/node/v24.19.0/bin/npm run docs:check-index\nroot 127545 126312 0 20:31 ? 00:00:00 bash /root/.local/bin/node /root/.nvm/versions/node/v24.19.0/bin/npm run docs:check-index\nroot 127546 127545 0 20:31 ? 00:00:00 bash /root/.local/bin/node /root/.nvm/versions/node/v24.19.0/bin/npm run docs:check-index\n","/bin/bash -lc \"ps -ef | rg 'git commit|pre-commit|docs:check|node ' | rg -v 'rg ' | tail -30\"",[1375],194,"exec-adb75568-5bc2-476b-8355-6b8d75f5dce4","47757",{"_925":1376,"_96":941},"ps -ef | rg 'git commit|pre-commit|docs:check|node ' | rg -v 'rg ' | tail -30",{"_881":1378,"_860":861,"_883":867},{"_944":1379,"_45":-5,"_888":1380,"_204":-5,"_947":1381,"_96":949},"call_fcmKgkkDRAkrI1EgP2uzJJbK",{"_893":867},{"_355":1382,"_951":-5},[1383,1384],{"_49":1155,"_96":955},{"_49":1369,"_96":955},{"_881":1386,"_860":861,"_883":867},{"_944":1379,"_45":1387,"_972":1388,"_888":1389,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd83c4198819382ccfe24c2df8355","const r = await tools.exec_command({cmd:\"ps -ef | rg 'git commit|pre-commit|docs:check|node ' | rg -v 'rg ' | tail -30\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":5000});\ntext(r.output);\n",{"_893":867},{"_881":1391,"_860":861,"_883":867},{"_884":-5,"_905":1392,"_45":1393,"_888":1394,"_909":1395,"_96":911},"gAAAAABqfNg8TaZUv54LZbvMhQw_pO7Z4WX5AjWe6-CnU4rYamqm8jf6W0qYQRSDiWWJnugQFX7Y-IP70XjU1FxTsJp5yXxyi9S5AfEn6hsGUdfiImfbgHAEnJZvQ-yKN06z8LVgbEjkbdmYzPQkBGaXK3Rqu9Q7sIULRlHLd8uLZnolRys8H4NS_hAlSzUA-FXlgOHpP-8AiKoypv-zJwmyrqUlGsgHZT5WLPe9YMsDZtu_IcCN0wM3EuxcGlyJpadeB8tEjVmKYTvsGOltqkc4-mRJKkTp2ve07z1Ums0lCOtYIWCLocO4shXFhAonXDq1iLM6eqIf45PcE7yXKT-QqJ5EPo9b2XRompZ-5aXCr8NCZ3JBorR_-VepmtXZnOZnevC36Bm8sDPmDb_5jsXWF7ZQIU_g7U32_uIP7ejnmewxjLgeU9vRH6pZyt7NrlcAVVsPACLWQsYWttIXLDpqolbkc7WGkmtJY2fanpmz_e3bqJtWbOqMlHKJwie5LcNbZifyMutLEiWH-SO8KdDM5X9CpnWTVBErho9dqi1ysYltJCZpE-f2jlpoICVLaVcShvGojbQvjZkTD9mg22AkAQCrTCFhlsR46F3JYU8LYxPG-caUHc6SBjOfsXS-sYkWP6mNN2fYPR9_dLjERI0-WqH0Y1OWstieKtEotazPunVuJaMpf3Q_crn8FVFRZpn8Ty1Md_QiCdZJbnQfd-nhcZPuwHQNheP4bam_lH-888YodC1RqVj_46g1_QJg7X3iLKQDA_jNhvPZH9PA0yHm43YQD1LBILS7PXdK-pHGDqDUDAkZCVlP6J2FatOkXru1SzuQcH_sXF6GepciHg4-8Qvra1TcW71p2fBbZZE0yD6P3cddoD_rpb9M6fGvDOk7GhBup0ZgEZe_xsAMimm56J6S3qCftATTF3OY4_xcP0kW1uz2GVK-QVPq83tIQd_2_21WabQte_6JOQhYnq6lHutSOqYztA==","rs_0e577ca7e8f114c6016a7cd83baa2081939ee800b09659790f",{"_893":867},[1396],{"_49":1397,"_96":914},"**Checking commit hook process**",{"_899":1399,"_881":1400,"_860":861,"_883":867},1786566716241,{"_884":1401,"_45":1393,"_909":1402,"_96":911},[],[1397],{"_899":1404,"_881":1405,"_860":861,"_883":867},1786566713920,{"_923":1406,"_925":1407,"_927":1408,"_929":930,"_865":1409,"_932":35,"_45":1410,"_934":1411,"_936":937,"_874":117,"_96":938},"## codex/pr-interaction-review-fixes\nM data/medication-interaction-index.json\nM scripts/build-medication-interaction-index.ts\nM src/components/clinical-dashboard/patient-details-dock-action.tsx\nM src/components/clinical-dashboard/patient-profile-panel.tsx\nM src/lib/medication-interaction-lexicon.ts\nM src/lib/medication-interactions.ts\nM tests/medication-interaction-lexicon-coverage.test.ts\nM tests/medication-interactions.test.ts\nM tests/patient-details-dock-action.dom.test.tsx\nM tests/patient-profile-medications.dom.test.tsx\n76a22e4 feat(medications): surface interactions on the record page and ice every verdict\n","/bin/bash -lc 'git status --short --branch; git log -1 --oneline'",[1412],226,"exec-0b4a2cd2-8a53-4bc4-bfa7-7412f89f8ac3","47267",{"_925":1413,"_96":941},"git status --short --branch; git log -1 --oneline",{"_881":1415,"_860":861,"_883":867},{"_944":1416,"_45":-5,"_888":1417,"_204":-5,"_947":1418,"_96":949},"call_jpzgDJYBV1tNdlS9W0kESwX5",{"_893":867},{"_355":1419,"_951":-5},[1420,1421],{"_49":1193,"_96":955},{"_49":1406,"_96":955},{"_881":1423,"_860":861,"_883":867},{"_944":1416,"_45":1424,"_972":1425,"_888":1426,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd8387c688193aa57b80c920e5c09","const r = await tools.exec_command({cmd:\"git status --short --branch; git log -1 --oneline\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":3000});\ntext(r.output);\n",{"_893":867},{"_881":1428,"_860":861,"_883":867},{"_884":-5,"_905":1429,"_45":1430,"_888":1431,"_909":1432,"_96":911},"gAAAAABqfNg4w329BektFXYjX8rzGV7dGzRd5qC47jCQ-wu20BL5Ddte6x6LFaI54Mws0WQO8ZKHXfAyAwvw04yIF2GtUCfMMWhKpcVZFKQh1-rpUxVa_6oQSjvFFmYNjabv_TH3RT9tGk7cxLONH_FUKvNfrOWOxSLiqWj69cIizTTlYiJCPbEWyfaVyq0OTL2u0VpZoiH-j70rjgJN-em603CM4WcAiRdLI6TN6Cd6LIl3Min6HRhe4xtwBCCZG6ev9nTpiOp6OcX3gbJXs0zSluTIPF8cNrOVSgmbnGeUi0M4_ASuVQz2f363hfdqvGvoOq8M_yqcANIeQPRvZROU8E0Q3r8ayODKw-YyzVRzcPtDAWJdVkj5UKBlByctT-JEjOIeIwtRh0szb1t2N5Yi_hh5YHev2V92TVvO32KFUtTVIZTWdn82dN9WAOOF3D_RR4yDGbOnSAXU5AARlAb3oJPvILM4wBl0g1VlMwVRCvVkYOGFPxFCC1bqH93mkAbGTa5bttiFOluG7UwRseFNLAlGIDkr3lyBuLIlKGX8leJsZjQ6d_854Le6Id4GMxNWgGa1Oquy98Pe0AOgHk2i0B6zSlVJMwrS_CqhDaSPId-DSiXv2rP_oHcSGJZbNAPZGLGyR2UInocxkRnvdavYXX19p4fLTvILwbX0uLnVn6Njz-ZzDZ8SNbi64uURJTrnO1QChWZvVTa4DYtWbO2SdcNQJZbVUt5XnViALBOB49RfT_sYk3zW9vogFBO0fClriFHE0gB-IU8D75NH_bjTCVOH4xWIBual4moKt2uz0sdWpTpGRcFwIlWHWIv9QkGNHXzDqgu3C0SfGAP0yEzyxtJMAdY9BzaLY9hk3yOr36zLdgH9Hp73QPohRWch4EawlmUu80x1vzbh9dfB5kYW_aUJmJcNHctwQVOWiYlxiCmaS-BkBtXJhDStvBz8wr9bHl-wCEOg","rs_0e577ca7e8f114c6016a7cd837f41c819391a62a798c9f1379",{"_893":867},[],{"_899":1434,"_881":1435,"_860":861,"_883":867},1786566712467,{"_884":1436,"_45":1430,"_909":1437,"_96":911},[],[],{"_881":1439,"_860":861,"_883":867},{"_944":1440,"_45":-5,"_888":1441,"_947":1442,"_96":1055},"call_wmyyp7aRUJlhPllNtw1gT8Jn",{"_893":867},{"_355":1443,"_951":-5},[1444,1445],{"_49":1339,"_96":955},{"_49":1446,"_96":955},"/root/.local/share/mise/installs/gh/2.96.0/gh_2.96.0_linux_amd64/bin/gh\nCodex\ncodex@openai.com\nSwitched to a new branch 'codex/pr-interaction-review-fixes'\n[pre-commit] Synchronizing generated documentation...\nDocs inventory current: 228 script files, 239 npm scripts.\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-inventory\n> node scripts/update-docs-inventory.mjs --check\n\nDocs inventory current: 228 script files, 239 npm scripts.\n",{"_881":1448,"_860":861,"_883":867},{"_1063":1449,"_944":1440,"_45":1450,"_888":1451,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"81\",\"yield_time_ms\":30000,\"max_tokens\":20000}","fc_0e577ca7e8f114c6016a7cd821dce081938d91bbbd90dbdace",{"_893":867},{"_881":1453,"_860":861,"_883":867},{"_944":1454,"_45":-5,"_888":1455,"_204":-5,"_947":1456,"_96":949},"call_XcBvyU2OMsNnZbwe2vOkeRIi",{"_893":867},"Script running with cell ID 81\nWall time 10.0 seconds\nOutput:\n",{"_881":1458,"_860":861,"_883":867},{"_944":1454,"_45":1459,"_972":1460,"_888":1461,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd81396ac8193937e21ca2e743f4f","const r = await tools.exec_command({cmd:\"command -v make_pr || true; command -v gh || true; git config --get user.name; git config --get user.email; git switch -c codex/pr-interaction-review-fixes && git add data/medication-interaction-index.json scripts/build-medication-interaction-index.ts src/components/clinical-dashboard/patient-details-dock-action.tsx src/components/clinical-dashboard/patient-profile-panel.tsx src/lib/medication-interaction-lexicon.ts src/lib/medication-interactions.ts tests/medication-interaction-lexicon-coverage.test.ts tests/medication-interactions.test.ts tests/patient-details-dock-action.dom.test.tsx tests/patient-profile-medications.dom.test.tsx && git commit -m \\\"fix(medications): fail interaction checks closed\\\"\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":20000});\ntext(r.output);\n",{"_893":867},{"_881":1463,"_860":861,"_883":867},{"_884":-5,"_905":1464,"_45":1465,"_888":1466,"_909":1467,"_96":911},"gAAAAABqfNgTYZnsLpe9gjzi8-X4bFmh8KT5Nxn32KYFOb6jzsci8RcjpoqxUEOU7Vh9i_Nw5uZTDm8SN_WqCTdC_xGjbGpIcBZSVpvqUKNq1grQd7_IBY1-4SUUuM4NepyLRCOMo_wQEYb9rB1OYwm2WtYZDKT223M9k2PWyQWUBi1wAyldu50OnCtT4kWCDwPhNdaA4CNeCZlUYqdXzWZUu1W2k0Oz1HRtC-FtD1VliGuvN3cSuk6DSAte2imfiOjLWlh7RXRJSvDchtzC89_B5cxN8eYIOsaSEl4yCNRWVmzpEuTiq7fe4HNcgeV1VPSWMb5QjqIXcQW7EauvOSmVqBiWik8KRvY5LaQA8OV7oje1AgsVkrxjvOHUXVWyyCyuGKEtBbqrOrMLuOOPE3DHuh05mBoUKpL0lR2Tbc9p_IFfXO_HeSHejpVxVuFYZAgNEa4JuMTDOJRAQ9esyqdzjvIbuQ5nosfTd3b6e7QPZxqCTIE4UbnBXZ-JqkQdVRMesRhkC7W_Uyz-O2Bq-Acw74qsBAKYwCGaeC9WETOZ0DD3PBrvhWeTR0ElY35t3W8iAYpTd4S7Q-jrfTmGhQRUF5ua1SewIQyQpFybSKL00vyk2VU7U4OOWogNfJTt8KuzAtBC03Ckoe0B-0NWydbOmHcN4cupDrJ_eeqtEABFyN-e8wMf8WWXsV6_uVkAAkzGU1Gh85ope-l07l_CISZ-qSpgPfGKvq5_uR7EzdwAY7IQOazN9tx15-uiqoV8_PE88ZHQkE-1r0kNNZHTq8J5vktMxh5gkpCHVsTGLN4_FogrZcB_97Mhj2jtz4J7O_k3mnoGpYAGUowc5AnrjN1m-CiyoSHkCzJ3YNv6Oqg5_xJGLLCoWBOSmr45t16aoY6BryUsFMZlGqvvidNy_XuBSiHRnKNjMfOJ4DbeDa4ygKsN99Pyr5R7LOjmtxQnoaY-99S73KkmUUpA7Vo91ChDhtjdRada2-lPSkJeWZD_JVhqWg5KW3jes_PJ9syl6Z_FhO7n21M2JOhlxabCRXV--sgr0UAAHhvcNSLa3V4Te33Lq1uKkUEJAExHh21o-aVJecPX3jTrMowjefnHresAtFoayPjDIDgjYdN3NzD1qes0PCoGHxghj2I8FJgnjNgFHRbFKlBIiph5gy47qu-WgvUid78qP4Q5NgJr_Ai4uQ0-LbUqv84xXJj-jXOofncdkGJYlyD8ZIYS69go6wB5BqYBEb1BlBgjRjMr40BQfJgXTSenb0XdjXiGVEm1kEg9wb9bfH2pGgFNigRQ7veXtBYpkSXI9nScKhcJYKFragFIswTEckx_rGuEBF1c9U03mzzVsIbKWvhcQdfQpdx1bBA9UHMizIAcMnUcweAd081wK3o6z61RbMlPZ-JuVa3XxrzzZRvfUpzfzXZvSjtO_bHAswi8k436APdjx9egal-6HSkJpYRZ8nl0-PCuPqbbfI-KKaJ6nrJHAmyc3_aGk6VpIYHF69MfNJEFMGR_yGDiElfXHcptTo2NkvYoeX7-m60ctQW9pfkNVY-P7sFkW4Z8Oip_Mxi7p1rxMZLlGz1kJYn0XpsMG3CqhiFAdzS_I_oeXKFVMTNykL1h4ryxWn9r9oYVVQ==","rs_0e577ca7e8f114c6016a7cd80d53488193ba9de3ddf9375ae5",{"_893":867},[1468],{"_49":1469,"_96":914},"**Planning PR creation with new branch**",{"_899":1471,"_881":1472,"_860":861,"_883":867},1786566675637,{"_884":1473,"_45":1465,"_909":1474,"_96":911},[],[1469],{"_899":1476,"_881":1477,"_860":861,"_883":867},1786566667826,{"_923":1478,"_925":1479,"_927":1480,"_929":930,"_865":1481,"_932":35,"_45":1482,"_934":1483,"_936":937,"_874":117,"_96":938},"## work\n M data/medication-interaction-index.json\n M scripts/build-medication-interaction-index.ts\n M src/components/clinical-dashboard/patient-details-dock-action.tsx\n M src/components/clinical-dashboard/patient-profile-panel.tsx\n M src/lib/medication-interaction-lexicon.ts\n M src/lib/medication-interactions.ts\n M tests/medication-interaction-lexicon-coverage.test.ts\n M tests/medication-interactions.test.ts\n M tests/patient-details-dock-action.dom.test.tsx\n M tests/patient-profile-medications.dom.test.tsx\n706\t318\tdata/medication-interaction-index.json\n21\t13\tscripts/build-medication-interaction-index.ts\n13\t4\tsrc/components/clinical-dashboard/patient-details-dock-action.tsx\n6\t17\tsrc/components/clinical-dashboard/patient-profile-panel.tsx\n6\t3\tsrc/lib/medication-interaction-lexicon.ts\n34\t15\tsrc/lib/medication-interactions.ts\n9\t3\ttests/medication-interaction-lexicon-coverage.test.ts\n31\t1\ttests/medication-interactions.test.ts\n2\t0\ttests/patient-details-dock-action.dom.test.tsx\n3\t1\ttests/patient-profile-medications.dom.test.tsx\n","/bin/bash -lc 'git diff --stat; git status --short --branch; git diff --numstat | tail -20; git diff --check'",[1484],332,"exec-a7fa256b-c917-40cf-86cb-9a1552855d51","49618",{"_925":1485,"_96":941},"git diff --stat; git status --short --branch; git diff --numstat | tail -20; git diff --check",{"_881":1487,"_860":861,"_883":867},{"_944":1488,"_45":-5,"_888":1489,"_204":-5,"_947":1490,"_96":949},"call_8v0nPmcWcvNYuzMhtxe3r9Dn",{"_893":867},{"_355":1491,"_951":-5},[1492,1493,1494],{"_49":1193,"_96":955},{"_49":1496,"_96":955},{"_49":1495,"_96":955},"[]"," data/medication-interaction-index.json | 1024 ++++++++++++++------\n scripts/build-medication-interaction-index.ts | 34 +-\n .../patient-details-dock-action.tsx | 17 +-\n .../clinical-dashboard/patient-profile-panel.tsx | 23 +-\n src/lib/medication-interaction-lexicon.ts | 9 +-\n src/lib/medication-interactions.ts | 49 +-\n ...medication-interaction-lexicon-coverage.test.ts | 12 +-\n tests/medication-interactions.test.ts | 32 +-\n tests/patient-details-dock-action.dom.test.tsx | 2 +\n tests/patient-profile-medications.dom.test.tsx | 4 +-\n 10 files changed, 831 insertions(+), 375 deletions(-)\n## work\n M data/medication-interaction-index.json\n M scripts/build-medication-interaction-index.ts\n M src/components/clinical-dashboard/patient-details-dock-action.tsx\n M src/components/clinical-dashboard/patient-profile-panel.tsx\n M src/lib/medication-interaction-lexicon.ts\n M src/lib/medication-interactions.ts\n M tests/medication-interaction-lexicon-coverage.test.ts\n M tests/medication-interactions.test.ts\n M tests/patient-details-dock-action.dom.test.tsx\n M tests/patient-profile-medications.dom.test.tsx\n706\t318\tdata/medication-interaction-index.json\n21\t13\tscripts/build-medication-interaction-index.ts\n13\t4\tsrc/components/clinical-dashboard/patient-details-dock-action.tsx\n6\t17\tsrc/components/clinical-dashboard/patient-profile-panel.tsx\n6\t3\tsrc/lib/medication-interaction-lexicon.ts\n34\t15\tsrc/lib/medication-interactions.ts\n9\t3\ttests/medication-interaction-lexicon-coverage.test.ts\n31\t1\ttests/medication-interactions.test.ts\n2\t0\ttests/patient-details-dock-action.dom.test.tsx\n3\t1\ttests/patient-profile-medications.dom.test.tsx\n",{"_881":1498,"_860":861,"_883":867},{"_944":1488,"_45":1499,"_972":1500,"_888":1501,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd809def88193bf44256baac35e92","const r = await tools.exec_command({cmd:\"git diff --stat; git status --short --branch; git diff --numstat | tail -20; git diff --check\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":5000});\ntext(r.output);\ntext(ALL_TOOLS.filter(x=>/make.?pr|pull request/i.test(x.name+' '+x.description)));\n",{"_893":867},{"_881":1503,"_860":861,"_883":867},{"_884":-5,"_905":1504,"_45":1505,"_888":1506,"_909":1507,"_96":911},"gAAAAABqfNgJILnz1xJGUgbn2x32bhAZWcj9bIvvgHg7FvF6-KulNmz9FhUR8av5-uaJOpm_n0llORdeIUXrszX5ufmRUky90QU63xGmpi5dbFtttiNKxrW2A1Hp4IYBDYo1fFdLCsRnC7pglhyGopyoRjkJ6BtLiWlI46xoNx0WdrmHjzVIERqpGbVueQWQ0igana2tHKn5rCa0A9DPrKAt7Jvvf2g0UgRC7hUFAtsi4FYp2lfgZB6pv8Auv-aTL6oh6h13ygc7VOlcKkuwZGtZ0OTprHshMlrt0eFrqKtFJEH5OiumkxXRroGtvrHcLFbcCOz_adf_104-0qFbbvD0I9ILmw1BTIMyzGBHCIO3bOcXEK-5gQ49GJy_klS_J0bs7iDmkBwdnDm1lh0QltlwHr_AFtI79gTOi8r-pVSi3expBwE_prqNYq-q9oJZ937848u36jOJ7pB-p_8tdrCt4piz83-4ZoVO8Ojuc-QFd4i-fRhDCTP_xme6-D_ev3z_Wbua0ga-i3MDSGrC5w8SdIxDz9FRwW9f0MmOswuN63RNcqvQzEJHz6xbDo-KRR01P0B2AL-aI1pIAqd6VZEh_Knq2R24VziaVHGI0wn_U4fnRb1Kut7faJ8XyEQwAV6FM2gwYeHf-KQcpbu7VyGeHpSK3Ij-FKPJM9KtVkr--VyZkWOVXfNFeE3_U_yVGxIuEytWSvfl4iPfL1ukrbkAyYRUWS30NPW5sV_I38koijVAcg1PASHwrsDC92R2J_0Zr8mlFmrIXUt_Nn9Pcqm0JpxCPtyB14k4XpK0AeP_dRPWj3iPcMgVh_HeEwtHvfQaQQR4mrhSxuCMTjgtjc8oj4FTotOiwKEWEEERBfa7WUB1Ww5f94-vRPhtR188qs8bnclDal0aE3WluPRsgx2_k9zGxzmISpUAdBZ4A6ne95X4I41wL4DZzYuDwtf-PU6IrgxZx53gEwobsEX46_ufJtIwcCSfJQRjfb_gj_0DHax_LHLyS6larOnY02ZeghoiN8J2m7UDPlaGaFLCwyUbk_0IzHvoeI-eFGeeIOb1qZ4Y-r3CnD0rOqCM5-8G8zeVQjx-_FAG","rs_0e577ca7e8f114c6016a7cd808f8048193a4d8bc8a7294b4d3",{"_893":867},[1508],{"_49":1509,"_96":914},"**Checking for nested PR tool**",{"_899":1511,"_881":1512,"_860":861,"_883":867},1786566665853,{"_884":1513,"_45":1505,"_909":1514,"_96":911},[],[1509],{"_881":1516,"_860":861,"_883":867},{"_944":1517,"_45":-5,"_888":1518,"_947":1519,"_96":1055},"call_JBYU2frYtg8YwiXQ8RQzKxDG",{"_893":867},{"_355":1520,"_951":-5},[1521,1522],{"_49":1524,"_96":955},{"_49":1523,"_96":955}," 111654\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:medication-interactions\n> node scripts/run-tsx.mjs scripts/build-medication-interaction-index.ts --check\n\n[medication-interactions] data/medication-interaction-index.json is up to date (523 rows).\n","Script completed\nWall time 9.7 seconds\nOutput:\n",{"_899":1526,"_881":1527,"_860":861,"_883":867},1786566662780,{"_923":1523,"_925":1528,"_927":1529,"_929":930,"_865":1530,"_932":35,"_45":1531,"_934":1532,"_936":937,"_874":117,"_96":938},"/bin/bash -lc 'kill 111264 111654 2>/dev/null || true; sleep 1; ps -p 111264,111654 -o pid= || true; npm run check:medication-interactions; git diff --check'",[1533],21956,"exec-ba1e27e3-775b-490b-8de2-badbee1f9c1b","89740",{"_925":1534,"_96":941},"kill 111264 111654 2>/dev/null || true; sleep 1; ps -p 111264,111654 -o pid= || true; npm run check:medication-interactions; git diff --check",{"_881":1536,"_860":861,"_883":867},{"_1063":1537,"_944":1517,"_45":1538,"_888":1539,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"79\",\"yield_time_ms\":30000,\"max_tokens\":5000}","fc_0e577ca7e8f114c6016a7cd7fc88bc81939f18db382bc41d37",{"_893":867},{"_881":1541,"_860":861,"_883":867},{"_944":1542,"_45":-5,"_888":1543,"_204":-5,"_947":1544,"_96":949},"call_BwaeugZeAn9gJthJd4V7WesJ",{"_893":867},"Script running with cell ID 79\nWall time 10.1 seconds\nOutput:\n",{"_899":1546,"_881":1547,"_860":861,"_883":867},1786566642662,{"_923":1548,"_925":1549,"_927":1550,"_929":930,"_865":1551,"_932":35,"_45":1552,"_934":1553,"_936":937,"_874":117,"_96":938},"done\n","/bin/bash -lc 'while ps -p 111264 >/dev/null; do sleep 2; done; echo done'",[1554],41272,"exec-2eb30027-7103-4415-8979-ac6289c4377c","49611",{"_925":1555,"_96":941},"while ps -p 111264 >/dev/null; do sleep 2; done; echo done",{"_899":1557,"_881":1558,"_860":861,"_883":867},1786566640884,{"_923":1559,"_925":1560,"_927":1561,"_929":930,"_865":1562,"_932":963,"_45":1563,"_934":1564,"_936":937,"_874":966,"_96":938},"\n RUN v4.1.10 /workspace/Database\n\n······","/bin/bash -lc 'node scripts/run-vitest.mjs run tests/pr-handoff-stop.test.ts --reporter=dot'",[1565],84780,"exec-9d555e3a-d1ad-49d5-8812-fb688f615a72","49743",{"_925":1566,"_96":941},"node scripts/run-vitest.mjs run tests/pr-handoff-stop.test.ts --reporter=dot",{"_881":1568,"_860":861,"_883":867},{"_944":1542,"_45":1569,"_972":1570,"_888":1571,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd7ef0e248193942c5d4f827c255a","const r = await tools.exec_command({cmd:\"kill 111264 111654 2>/dev/null || true; sleep 1; ps -p 111264,111654 -o pid= || true; npm run check:medication-interactions; git diff --check\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":5000});\ntext(r.output);\n",{"_893":867},{"_881":1573,"_860":861,"_883":867},{"_884":-5,"_905":1574,"_45":1575,"_888":1576,"_909":1577,"_96":911},"gAAAAABqfNfv2kl5vdIW0nRkiajsQlVfpxF-BhHvGkYoBEFZ20PuQLJEJxTlP1t03SyFNUE8d7okwA8_HU7qjj2if5DNCJFuonaafKBDsaSGlcGmWJoHMxLz3j63ziGS00ltqELlbURIWEDqplPOnO9L0cfZyD_UCG3SlL2CWx53iy1sbHFyq3KkiR4vQHloTNbXEYZPeq9Dyo-RNdJM8VM1EJvSPNLEB01AxEu62nhe5BUG1Vz6HhgL35KDdrGbFhq1SCrge8b_1xf8AYVQY6HntSXD-YbOzazi5asvZ6l0v9KqlOl-HQo07wkLwZUuJmu1zL-5qfxmuqQUrqfR6tWPuLfUEAFzbQigMheZYJ__wvUygq3b57FWG-AX19TwBDCix5GZpe33aDrRKoJkj9wkvD0cPWjpsUf8RBhbE5sKx9KyBDed8tFTU7hj7-OK5B58lWaDQvgUPtZcIRy5JVzUMvHa6O_r_bLeSNkyglSCquWTtIE3KdmRk0WDqAZWh47JjaRX5Jzd4AMfsvYIYROJ3RsBSiUNKTGvehEgaBhNInoapnZ_n1xYahQL0DvJr2wJdyNksbqE-QwmAafABKDkW3X0SzjDtvPRMT7lNke3gvFOVdzelCCDdMvL4TQQv_w3JSTcz_0ubCeOlrjR9HWtlQ7K2o8hnlp0R7QEyeWNHJiIs78wmV8pUrYZ9X04aEN7agXwsmXP4SBzFz3-2_urnbxrvXIc2NxIyOWCdTUrWKGYDMkQ8C2XTs33IEvgqCcVFxjNHyRVEYPJN68MRJonngPngGRmPrlNxKaWm3f6-Rus7N9ugjmFJgu-tgjoWT8iyKuocfxk8YZ0TDF3l5WZcx7sSZ131XakyzNvxEunmOqst6LYEVOuipW3bzgEPhlC2NAxxP4H7mShU9a_S8n08_3r-vMXxWfNBTlOoXQCAcZXpb4hBjwm_h5j7z8KVZwkJD6sxR_ClPinGug0imA_Q3a4Bw5rRlGOBvUZ4vT65_6v7JJXhY7eNFozNL3KMwFh7IhyEHlnQO-Vr17nTmlVmaVLcCYSeH7cxdklM6O0cN9_uQCPcSaaV7bvUxtFFEnq-HFmls5i","rs_0e577ca7e8f114c6016a7cd7ee1bd88193b39bd56c1816e8e3",{"_893":867},[1578],{"_49":1579,"_96":914},"**Terminating stalled test process**",{"_899":1581,"_881":1582,"_860":861,"_883":867},1786566639047,{"_884":1583,"_45":1575,"_909":1584,"_96":911},[],[1579],{"_881":1586,"_860":861,"_883":867},{"_944":1587,"_45":-5,"_888":1588,"_204":-5,"_947":1589,"_96":949},"call_TMguzrPHrmIhRBJlTkzDkRnm",{"_893":867},{"_355":1590,"_951":-5},[1591,1592],{"_49":1010,"_96":955},{"_49":1593,"_96":955}," PID ELAPSED CMD\n 111264 01:20 /root/.nvm/versions/node/v24.19.0/bin/node scripts/run-vitest.mjs run tests/pr-handoff-stop.test.ts --reporter=dot\n",{"_899":1595,"_881":1596,"_860":861,"_883":867},1786566636009,{"_923":1593,"_925":1597,"_927":1598,"_929":930,"_865":35,"_932":35,"_45":1599,"_934":1600,"_936":937,"_874":117,"_96":938},"/bin/bash -lc 'ps -p 111264 -o pid,etime,cmd || true'",[1601],"exec-7dd76a06-6245-4624-ab5f-ada8225fa5d9","98982",{"_925":1602,"_96":941},"ps -p 111264 -o pid,etime,cmd || true",{"_881":1604,"_860":861,"_883":867},{"_944":1587,"_45":1605,"_972":1606,"_888":1607,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd7eb00f88193b6a842e693d26faf","const r = await tools.exec_command({cmd:\"ps -p 111264 -o pid,etime,cmd || true\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":1000});\ntext(r.output);\n",{"_893":867},{"_881":1609,"_860":861,"_883":867},{"_884":-5,"_905":1610,"_45":1611,"_888":1612,"_909":1613,"_96":911},"gAAAAABqfNfrN4eCRAocrR43HAZekuEKzL516bSq6GAkX5hvIpq9Os6mGK0ud15WjSKBA2zyU92X90u5GZaGxvas3KgkIxWiiHmoRhTiVG7YNeuSAG5RHBJwgGmZOLjKQwbzOmKQ6JRu6PRHtJ6HIkDU-TUi5SIGpkdkxHlUsE4_CLUoC827mHhcC-DCwAfSInHtWR5ip2I4deI2fzu8tmKi9urCjmb6I5G1Sox7miw9W_odXPkooMSYaGiN1MBuQD8j14MVJjpYlDZUOS-tf7aPXAXmS77QraTDhwH2gEgCLUMj8UdNBG05f4d0nmtWf2IJO-hHAwT5uXX8eJK8x45hFQnLhIufv26d-JbEu1YKZFUbMsMNZVusJH3Rn14nOpJDQwJiwpaBbYf-8YYwMRq0-D3Crvxtpk_4GQXWpYqPVCy_P82ACLmpjy1YRklHrgJJeSLFIPS3-3e5RKTgoqVDkDugCJ2cP_6IZDpNafC1q35fqOYEoDUgaUSBCiKr6f3_GsbgYXTyCu-bZ-TXcdCETemqB18_-5IjHdl-_ImKNSHQ5Ai5ZDkVnVIowbrd_ToOtfL73EEkwMbyxsPS-uZ6yY8RmE7nxxQzYqy_Ylcu5S2_ulspNN8bydbnzD-mzBc2HcKSSZXQTj-HwjEn-yYGcEiJaOB3RTfjCk6GdMMs4eGnbGeT29B3Zea541O11cbUaxdksl44TQ3BPMP0cYXQalS4BKVJytWiP2wZiP4TED0yZT5RoE4fElhIIkZEbxCSH-GOrsxlV86dpB3fORg1rAE70iL3O0Gop_yOyoXzye8G2Ya7mNGbT_O_2wQ6KDKi50u_YQ-x4mvdbD8lWWrxt5Ceek7AQit_Ne_KZRs1Shyky5un6cvx2JWa6EeJW-AqHSjw0RoZhrx1KoPuSgr3yAtnZzq112ddVflcET9mxN7ikGjBp6c=","rs_0e577ca7e8f114c6016a7cd7ea71bc8193bc8dea73cb98144f",{"_893":867},[],{"_899":1615,"_881":1616,"_860":861,"_883":867},1786566634986,{"_884":1617,"_45":1611,"_909":1618,"_96":911},[],[],{"_881":1620,"_860":861,"_883":867},{"_944":1621,"_45":-5,"_888":1622,"_947":1623,"_96":1055},"call_vionYuuRVt7t4M75eGYj8jXg",{"_893":867},{"_355":1624,"_951":-5},[1625,1626],{"_49":1627,"_96":955},{"_49":341,"_96":955},"Script completed\nWall time 18.0 seconds\nOutput:\n",{"_881":1629,"_860":861,"_883":867},{"_1063":1630,"_944":1621,"_45":1631,"_888":1632,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"77\",\"yield_time_ms\":30000,\"max_tokens\":1000}","fc_0e577ca7e8f114c6016a7cd7d4f7c88193a44b8b8da13d3978",{"_893":867},{"_881":1634,"_860":861,"_883":867},{"_944":1635,"_45":-5,"_888":1636,"_204":-5,"_947":1637,"_96":949},"call_xx1Icxd0yq2PaD9ohd2K2G9r",{"_893":867},"Script running with cell ID 77\nWall time 10.0 seconds\nOutput:\n",{"_881":1639,"_860":861,"_883":867},{"_944":1635,"_45":1640,"_972":1641,"_888":1642,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd7c32ba88193b3a8436c56ad5e29","const r = await tools.exec_command({cmd:\"while ps -p 111264 >/dev/null; do sleep 2; done; echo done\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":1000});\ntext(r.output);\n",{"_893":867},{"_881":1644,"_860":861,"_883":867},{"_884":-5,"_905":1645,"_45":1646,"_888":1647,"_909":1648,"_96":911},"gAAAAABqfNfDkZj7Cmuph-neSzzZ5iIsS-mK1Idjm9URN1rXSXe5FrBKX5gK3ElNsimCeJNvEsjnRx26H8iJ_bq-5ih9LfysODdiAoVibu19BFORMxpAkN8Rx86p8CU0bw7pGdHoMkZWgLRo8O7ThEnN9Ld8MJdZwGm7THkrgv3kw9aykN13Z0qv2hkTd-Cfzo53feMNVWXOzhXBrEfKa3CN6n_KlS5rhqNkpDf3taO4tV3ZrwIgboQSRlshxrAJMLIAdYJKqT3ed_eEhne3S1W6jpILjFi8hVMca5s2518FvcrSbM3xYWmoIfTRcPJXHRehJTbZJPaRmvx4DZ7IwoPzjlu6e0OnNL2-8wtdeBIqv_PuaC8O7o9X04nkLv83VDmbWJL_jQ5TRYEUoatsheQvUUvJLmLzta09Oip90SmKoKdFQd8MgW_tTKSwCUCnUlqc30-in7T8NpgJJMCgPeM4lQ7bnGPFljWrcZunw2VGYSfgsy1oSpxIB4KmOjOgeg59aYMFazLq1NNuvIo2j2Bk4Pz3MeG7DQYflkradfZabuzow5XhECrMHxpPsCdavtaLacaUiIpc37jq73fbJ85Rb3sEqvFVoXIWp5is1gQrZd3SC8TGbD6T32h7Dna0Vil2tIgSDXgD-LD91oPX-aE0GLgoJGR0TxwyMutPZRGivWLwbYv3FpsafCKyumU3h49OE-ZKqR6fmFzZnDNTvh_bIpy_N9_dqZPCb7I5UiSF3zFl7_HpqGBZSU24kP2umx-xVzJzZfv0fNFilEAga7nic0XY0p5OOcyVlFJ7adtJqso7twTf2m-9rdZG5XN3SQ6kXDu7eKCUIjMCX1Qx0EKtCqTBZjpZ1MWoEYpxSLZY47Nd7asQ5YRspJ2P8YGaavcg6s3omdalUrAtXy3nXeK7ak-RFHTUc9wtIlziAhvvoxh9oXNeU3wNPi-UHIbiGLhTejcpeK7m0sB1EKbs0RIHqs9aY50N9BeUIuXR1C-fiGWXXVYKNI6m8CSL81blCzRcAYJHjW2RKizRsiWpWk9LXL14T0pl-7oHJlOoA5nuzi6zbe2h0WFP4Gt4DBV0N8ty7RwjEjpF","rs_0e577ca7e8f114c6016a7cd7c1fa448193b9846e6f022cb6e8",{"_893":867},[1649],{"_49":1650,"_96":914},"**Clarifying polling process usage**",{"_899":1652,"_881":1653,"_860":861,"_883":867},1786566595310,{"_884":1654,"_45":1646,"_909":1655,"_96":911},[],[1650],{"_899":1657,"_881":1658,"_860":861,"_883":867},1786566591308,{"_923":1659,"_925":1660,"_927":1661,"_929":930,"_865":1662,"_932":35,"_45":1663,"_934":1664,"_936":937,"_874":117,"_96":938}," M data/medication-interaction-index.json\n M scripts/build-medication-interaction-index.ts\n M src/components/clinical-dashboard/patient-details-dock-action.tsx\n M src/components/clinical-dashboard/patient-profile-panel.tsx\n M src/lib/medication-interaction-lexicon.ts\n M src/lib/medication-interactions.ts\n M tests/medication-interaction-lexicon-coverage.test.ts\n M tests/medication-interactions.test.ts\n M tests/patient-details-dock-action.dom.test.tsx\n M tests/patient-profile-medications.dom.test.tsx\n","/bin/bash -lc \"ps -ef | rg 'vitest|verify-pr-local|next build' | rg -v rg || true; git status --short; git diff --check\"",[1665],230,"exec-1fc9765d-c099-4ec1-a443-b012dbf32fb7","49361",{"_925":1666,"_96":941},"ps -ef | rg 'vitest|verify-pr-local|next build' | rg -v rg || true; git status --short; git diff --check",{"_881":1668,"_860":861,"_883":867},{"_944":1669,"_45":-5,"_888":1670,"_204":-5,"_947":1671,"_96":949},"call_Af22cr1Ti8ir2CGkuOHfjMAD",{"_893":867},{"_355":1672,"_951":-5},[1673,1674],{"_49":1676,"_96":955},{"_49":1675,"_96":955},"root 111264 18520 1 20:29 ? 00:00:00 /root/.nvm/versions/node/v24.19.0/bin/node scripts/run-vitest.mjs run tests/pr-handoff-stop.test.ts --reporter=dot\nroot 111654 111264 5 20:29 ? 00:00:01 /root/.nvm/versions/node/v24.19.0/bin/node /workspace/Database/node_modules/vitest/vitest.mjs run tests/pr-handoff-stop.test.ts --reporter=dot\nroot 111673 111654 2 20:29 ? 00:00:00 /root/.nvm/versions/node/v24.19.0/bin/node --experimental-import-meta-resolve --require /workspace/Database/node_modules/vitest/suppress-warnings.cjs --conditions node --conditions development /workspace/Database/node_modules/vitest/dist/workers/forks.js\n M data/medication-interaction-index.json\n M scripts/build-medication-interaction-index.ts\n M src/components/clinical-dashboard/patient-details-dock-action.tsx\n M src/components/clinical-dashboard/patient-profile-panel.tsx\n M src/lib/medication-interaction-lexicon.ts\n M src/lib/medication-interactions.ts\n M tests/medication-interaction-lexicon-coverage.test.ts\n M tests/medication-interactions.test.ts\n M tests/patient-details-dock-action.dom.test.tsx\n M tests/patient-profile-medications.dom.test.tsx\n","Script completed\nWall time 0.5 seconds\nOutput:\n",{"_881":1678,"_860":861,"_883":867},{"_944":1669,"_45":1679,"_972":1680,"_888":1681,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd7bd8e048193b362933121c93bea","const r = await tools.exec_command({cmd:\"ps -ef | rg 'vitest|verify-pr-local|next build' | rg -v rg || true; git status --short; git diff --check\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":5000});\ntext(r.output);\n",{"_893":867},{"_881":1683,"_860":861,"_883":867},{"_884":-5,"_905":1684,"_45":1685,"_888":1686,"_909":1687,"_96":911},"gAAAAABqfNe9MYF-hkzQXnLXvpH_h1N4AIA0_MvXjfOVIncBPdOieo0Pchfd4CT25_5uD385xUOWMa1Gzlkjfx5V8cIZAkQ1MQJexKc0_dDEe5450QawvJukGiGL-2nyJTPBkJ9EDB9EKJGt6oqTka3PvLqF7U3wY9Y905EZUDutHN7ZPfNA8PR0tmSi-LXphmveaSdgWCTO6K7iZ139_8MC0KMjMfOd_WxrM0dl-A9RZ2WhkXddtPPQE99VuOsPfRle87ddRoCoMSizdM8XNbeDAFzyK5vNCvEsTq0GNqklSa8Vj-JaOAYne7Ctr54y6QotNb3x2OXSjCOqnWcvkJmYcAnAwWBs4BbBj_mIHNIpgJTlRKUdb5I4PtNKG5yP3rPkrMw540GCoA4nBsXe2MoU5G8UVeFvicIdxKQJmBbY89VVaHWo0LLGQxZItSeRwEUOkJ0vIXk5B7Ni-XGgHY08sRKpZ07kqlP4Q0rWfvDtxCRiRZahwC7Lny4r5ZWKwIt4UHY_LAxDNWifD6xk52A1r6oofiW7qyH7okKAJy_K2Okao9blcytmKnwaTiAE0oPeMuWsvBheVDBmo6PpAyz-ljk_CyRqMGVAunOd384YfGiBq1sfKKSgHYApthXpdmsTOcbPjBuu_U97gzarTXNcsughWU44EiZnJlmq4tMQ1UixbipLUYbb0OUQfwUK1NudLYeTYZrY8UrH4JpdFA5QVces9Sa6NGsfvCJXP1-INNhh80vysVU8cmsAG_32pCAod_iDrj5qX4MZ1QxO2uZk7ySYEWZld2obTpzRmyvkmbmlvkygBgximffZaz-oSK1bB4eSrtAtUgi76D8fhWmHZf7ZCFKQ987lE1n5GooDUJs0eFPk1YVcwgJINJbUrYKvh6vLyyUyp-4aMBOy34f2N6GDu_q8i5ceVRGyGi2cM9DCye0azaGVlVT4nV1lqNhbX1XR6atq3zNYC8veLs8x_cvSMMKZnEWvwJYDO2wjhY97HzIkOZhNtzyjlq4fMmy4d5XTb4GMcHAwifnGxcqYzcd-7mKgPqWpUrv0B_rRoX-VFLTAnsQ=","rs_0e577ca7e8f114c6016a7cd7bcb96881938361bd418f82ca8d",{"_893":867},[1688],{"_49":1689,"_96":914},"**Checking coordinator process status**",{"_899":1691,"_881":1692,"_860":861,"_883":867},1786566589544,{"_884":1693,"_45":1685,"_909":1694,"_96":911},[],[1689],{"_881":1696,"_860":861,"_883":867},{"_944":1697,"_45":-5,"_888":1698,"_947":1699,"_96":1055},"call_HFnH7AVMQZ822qu19ovSxuSe",{"_893":867},{"_355":1700,"_951":-5},[1701,1702],{"_49":1704,"_96":955},{"_49":1703,"_96":955},"\n RUN v4.1.10 /workspace/Database\n\n·····","Script completed\nWall time 17.4 seconds\nOutput:\n",{"_881":1706,"_860":861,"_883":867},{"_1063":1707,"_944":1697,"_45":1708,"_888":1709,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"75\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd7a83a408193b2ef974ebd51bb59",{"_893":867},{"_881":1711,"_860":861,"_883":867},{"_944":1712,"_45":-5,"_888":1713,"_204":-5,"_947":1714,"_96":949},"call_fCWNtCpsx3HuC7apKNKsprQD",{"_893":867},"Script running with cell ID 75\nWall time 10.0 seconds\nOutput:\n",{"_881":1716,"_860":861,"_883":867},{"_944":1712,"_45":1717,"_972":1718,"_888":1719,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd79b0dfc8193b09764a4c759931f","const r = await tools.exec_command({cmd:\"node scripts/run-vitest.mjs run tests/pr-handoff-stop.test.ts --reporter=dot\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":12000});\ntext(r.output);\n",{"_893":867},{"_881":1721,"_860":861,"_883":867},{"_884":-5,"_905":1722,"_45":1723,"_888":1724,"_909":1725,"_96":911},"gAAAAABqfNebGUHZbYdJGTQcWcXjuD3XU9qo_xlOiXm9ReJtTffieEm5d0OdNPGy6XRv1Tx_31PVR-res6tuAoV1hEc9eldT_8aDycbhwOdsJTgpt3-LKtKX9cF_hmax9kYm3krdIJ3b1oP837QPw1WZoCRsImmi5xBI7P8sAC1Pkjc8YJMiXRJ4MwYXl0OHAhxHvY3OhU43_rmLz82XL-do5X7XIEUp9Z_szvlo9XxT4ppTCDRlqGaV9VkUfAVF1sWJ8RWOVRMR-D9QSTscLpYEpBJWvRgdbUiEIJ4FaR0w61xONsupwMkNB5OrUZSgtKReXQDc1P-Pt_NpiAJRftC9fwU0XrfiTAcNXGK5N1cLNo5SiWNDXG5C4AVPfZDlY16hsMVSUKki5G5GnPhP6B1lGN8po7yBFU_SR_q2mGYPDg0MQPxEm6M7ZRj3_DInvqfrn_MaRAXJVV8TYmxVaLD7aaa85K3WuHwI_gfJPp37vWVVPWPK209Yl6bR82xOm9iaGtir4RtQU7vB904tS4I_GeuTrKlLhrpgiwjVYSNcds4o_4VAllHJpbhNvU6aLELmjO_zpSsoiUu09xSVtmR87BejMX7KiledlG6QPReG0zhlDnHpQn3ZmlCc8PhEQEnjNQA4-8r49zvd1_2WBkQP7ZFv6YaVAEt8RCVTAG5jLF-j1QOSHpGh8k5jfXI3UXDEDROX9yrkZAWIbxPXJCxrVgfES2PFNZ9RflVlZOG7fOxkvhasobQqu19bQnSEj2DndV-_9dEVhfk1MSBevkgtZmCqK7j4cVQbJFklFJBxxm2wWWT2jUe9-a81ck9v0BUTYqXyCIr0nCgFQbvDVNSLOMbrBeEh4NhKBUjjKYzvHimAOg85UteKGFqWcDdSyrv679jD58Yq0o8J4PucscyOTG9KZ1x2ufcuF2YsdE8lqXodQD3ySaZ_q6CNY-PjqRee70XlDYXu2VdgJhYoduv7SgFXXsEzdwCHoOvWfA7zcshHL2cvy5HOsfW4cIjcCio7VHQbGVz2","rs_0e577ca7e8f114c6016a7cd79a40e08193b7177424d78912cd",{"_893":867},[1726],{"_49":1727,"_96":914},"**Rerunning failing tests to identify flakiness**",{"_899":1729,"_881":1730,"_860":861,"_883":867},1786566555042,{"_884":1731,"_45":1723,"_909":1732,"_96":911},[],[1727],{"_899":1734,"_881":1735,"_860":861,"_883":867},1786566552943,{"_923":1736,"_925":1737,"_927":1738,"_929":930,"_865":1739,"_932":1740,"_45":1741,"_934":1742,"_936":937,"_874":966,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 format\n> prettier --write .\n\n.agents/plugins/api_marketplace.json 61ms (unchanged)\n.agents/plugins/marketplace.json 5ms (unchanged)\n.agents/skills/access/agents/openai.yaml 12ms (unchanged)\n.agents/skills/access/SKILL.md 55ms (unchanged)\n.agents/skills/api/agents/openai.yaml 7ms (unchanged)\n.agents/skills/api/SKILL.md 19ms (unchanged)\n.agents/skills/audit/agents/openai.yaml 5ms (unchanged)\n.agents/skills/audit/SKILL.md 22ms (unchanged)\n.agents/skills/catalog.json 7ms (unchanged)\n.agents/skills/clinical-change-proof/agents/openai.yaml 2ms (unchanged)\n.agents/skills/clinical-change-proof/SKILL.md 14ms (unchanged)\n.agents/skills/clinical/agents/openai.yaml 5ms (unchanged)\n.agents/skills/clinical/SKILL.md 22ms (unchanged)\n.agents/skills/data/agents/openai.yaml 2ms (unchanged)\n.agents/skills/data/SKILL.md 9ms (unchanged)\n.agents/skills/database-flightplan/agents/openai.yaml 2ms (unchanged)\n.agents/skills/database-flightplan/SKILL.md 7ms (unchanged)\n.agents/skills/database-skills.md 9ms (unchanged)\n.agents/skills/dependencies/agents/openai.yaml 6ms (unchanged)\n.agents/skills/dependencies/SKILL.md 15ms (unchanged)\n.agents/skills/deploy/agents/openai.yaml 2ms (unchanged)\n.agents/skills/deploy/SKILL.md 8ms (unchanged)\n.agents/skills/documents/agents/openai.yaml 2ms (unchanged)\n.agents/skills/documents/SKILL.md 9ms (unchanged)\n.agents/skills/drift/agents/openai.yaml 2ms (unchanged)\n.agents/skills/drift/SKILL.md 10ms (unchanged)\n.agents/skills/export/agents/openai.yaml 2ms 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(unchanged)\n.agents/skills/operations/SKILL.md 6ms (unchanged)\n.agents/skills/operator-closeout/agents/openai.yaml 5ms (unchanged)\n.agents/skills/operator-closeout/SKILL.md 7ms (unchanged)\n.agents/skills/performance/agents/openai.yaml 3ms (unchanged)\n.agents/skills/performance/SKILL.md 8ms (unchanged)\n.agents/skills/plan/agents/openai.yaml 2ms (unchanged)\n.agents/skills/plan/SKILL.md 7ms (unchanged)\n.agents/skills/privacy/agents/openai.yaml 2ms (unchanged)\n.agents/skills/privacy/SKILL.md 11ms (unchanged)\n.agents/skills/prompt-perfector/agents/openai.yaml 3ms (unchanged)\n.agents/skills/prompt-perfector/references/repository-workflow.md 44ms (unchanged)\n.agents/skills/prompt-perfector/scripts/verify-repository-isolation.mjs 136ms (unchanged)\n.agents/skills/prompt-perfector/SKILL.md 13ms (unchanged)\n.agents/skills/rag-change-lab/agents/openai.yaml 2ms (unchanged)\n.agents/skills/rag-change-lab/SKILL.md 4ms (unchanged)\n.agents/skills/rag/agents/openai.yaml 2ms (unchanged)\n.agents/skills/rag/SKILL.md 5ms (unchanged)\n.agents/skills/recovery/agents/openai.yaml 1ms (unchanged)\n.agents/skills/recovery/SKILL.md 5ms (unchanged)\n.agents/skills/reindex/agents/openai.yaml 2ms (unchanged)\n.agents/skills/reindex/SKILL.md 9ms (unchanged)\n.agents/skills/release/agents/openai.yaml 1ms (unchanged)\n.agents/skills/release/SKILL.md 5ms (unchanged)\n.agents/skills/review/agents/openai.yaml 3ms (unchanged)\n.agents/skills/review/SKILL.md 10ms (unchanged)\n.agents/skills/run/agents/openai.yaml 9ms (unchanged)\n.agents/skills/run/SKILL.md 9ms (unchanged)\n.agents/skills/security/agents/openai.yaml 3ms (unchanged)\n.agents/skills/security/SKILL.md 6ms (unchanged)\n.agents/skills/session-lifecycle/agents/openai.yaml 2ms (unchanged)\n.agents/skills/session-lifecycle/SKILL.md 4ms (unchanged)\n.agents/skills/skills/agents/openai.yaml 2ms (unchanged)\n.agents/skills/skills/SKILL.md 5ms (unchanged)\n.agents/skills/sources/agents/openai.yaml 1ms (unchanged)\n.agents/skills/sources/SKILL.md 7ms (unchanged)\n.agents/skills/task/agents/openai.yaml 2ms (unchanged)\n.agents/skills/task/SKILL.md 5ms (unchanged)\n.agents/skills/test/agents/openai.yaml 1ms (unchanged)\n.agents/skills/test/SKILL.md 5ms (unchanged)\n.agents/skills/ui/agents/openai.yaml 1ms (unchanged)\n.agents/skills/ui/SKILL.md 7ms (unchanged)\n.agents/skills/verify-triage-fix/agents/openai.yaml 3ms (unchanged)\n.agents/skills/verify-triage-fix/SKILL.md 4ms (unchanged)\n.agents/skills/workflows/agents/openai.yaml 2ms (unchanged)\n.agents/skills/workflows/SKILL.md 3ms (unchanged)\n.claude/agents/clinical-governance-reviewer.md 25ms (unchanged)\n.claude/agents/frontend-ui-reviewer.md 14ms (unchanged)\n.claude/agents/ingestion-worker-reviewer.md 14ms (unchanged)\n.claude/agents/pr-ci-fixer.md 13ms (unchanged)\n.claude/agents/rag-retrieval-reviewer.md 33ms (unchanged)\n.claude/agents/repo-auditor.md 10ms (unchanged)\n.claude/agents/supabase-schema-guardian.md 12ms 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10ms (unchanged)\ntests/search-route-ownership.test.ts 18ms (unchanged)\ntests/search-scope.test.ts 30ms (unchanged)\ntests/search-shell-props.test.ts 3ms (unchanged)\ntests/security-headers.test.ts 14ms (unchanged)\ntests/semantic-flags.test.ts 5ms (unchanged)\ntests/semantic-rerank.test.ts 26ms (unchanged)\ntests/sentry-logging.test.ts 7ms (unchanged)\ntests/server-timing.test.ts 6ms (unchanged)\ntests/service-detail-page.dom.test.tsx 10ms (unchanged)\ntests/services-catalog.test.ts 20ms (unchanged)\ntests/services-client-boundary.test.ts 10ms (unchanged)\ntests/services.test.ts 6ms (unchanged)\ntests/settings-dialog-actions.dom.test.tsx 13ms (unchanged)\ntests/settings-inert-preferences.dom.test.tsx 7ms (unchanged)\ntests/setup-codex-worktree.test.ts 8ms (unchanged)\ntests/setup-status-route.test.ts 22ms (unchanged)\ntests/setup/jsdom.setup.ts 3ms (unchanged)\ntests/shared-home-empty-state.dom.test.tsx 9ms (unchanged)\ntests/shared-search-shell-url-sync.test.ts 6ms (unchanged)\ntests/sheet-focus-stress.dom.test.tsx 28ms (unchanged)\ntests/sheet-focus.dom.test.tsx 25ms (unchanged)\ntests/sheet.dom.test.tsx 21ms (unchanged)\ntests/sidebar-collapsed.test.ts 3ms (unchanged)\ntests/signed-image.dom.test.tsx 20ms (unchanged)\ntests/signed-image.test.ts 5ms (unchanged)\ntests/signed-url-cache.test.ts 5ms (unchanged)\ntests/site-map.test.ts 9ms (unchanged)\ntests/smart-rag-api.test.ts 14ms (unchanged)\ntests/source-authority-tooling.test.ts 25ms (unchanged)\ntests/source-backed-recovery-cross-reference.test.ts 8ms (unchanged)\ntests/source-badges-off-vocab.dom.test.tsx 5ms (unchanged)\ntests/source-governance.test.ts 13ms (unchanged)\ntests/source-metadata-browser-safety.test.ts 6ms (unchanged)\ntests/source-metadata.test.ts 14ms (unchanged)\ntests/source-preview-popover.dom.test.tsx 13ms (unchanged)\ntests/source-review-policy.test.ts 12ms (unchanged)\ntests/source-review-route.test.ts 29ms (unchanged)\ntests/source-review-schema.test.ts 8ms (unchanged)\ntests/source-text-sanitizer.test.ts 25ms (unchanged)\ntests/specifiers-content.test.ts 16ms (unchanged)\ntests/specifiers.test.ts 7ms (unchanged)\ntests/spend-metrics.test.ts 11ms (unchanged)\ntests/sse-heartbeat.test.ts 4ms (unchanged)\ntests/storage-cleanup-safety.test.ts 4ms (unchanged)\ntests/storage-upload-compensation.test.ts 3ms (unchanged)\ntests/stranded-queued-recovery.test.ts 15ms (unchanged)\ntests/stubs/server-only.ts 1ms (unchanged)\ntests/style-contract-registry.test.ts 10ms (unchanged)\ntests/summarise-web-vitals.test.ts 45ms (unchanged)\ntests/summarize-agent-conversation.test.ts 7ms (unchanged)\ntests/supabase-errors.test.ts 3ms (unchanged)\ntests/supabase-health.test.ts 5ms (unchanged)\ntests/supabase-project.test.ts 7ms (unchanged)\ntests/supabase-schema.test.ts 318ms (unchanged)\ntests/supabase-server.test.ts 13ms (unchanged)\ntests/sync-open-pr-branches.test.ts 6ms (unchanged)\ntests/table-fact-ranking.test.ts 3ms 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(unchanged)\ntests/tsx-server-only-runner.test.ts 6ms (unchanged)\ntests/ui-accessibility.spec.ts 80ms (unchanged)\ntests/ui-chrome-scroll.spec.ts 20ms (unchanged)\ntests/ui-document-canvas.spec.ts 16ms (unchanged)\ntests/ui-document-top-navigation-mockup.spec.ts 7ms (unchanged)\ntests/ui-forms-section-nav.spec.ts 7ms (unchanged)\ntests/ui-formulation.spec.ts 30ms (unchanged)\ntests/ui-hydration.spec.ts 6ms (unchanged)\ntests/ui-mode-nav-density.spec.ts 25ms (unchanged)\ntests/ui-overlap.spec.ts 29ms (unchanged)\ntests/ui-overlay-css-contract.test.ts 17ms (unchanged)\ntests/ui-phone-scroll-document-rail.spec.ts 11ms (unchanged)\ntests/ui-phone-scroll-page-owned.spec.ts 138ms (unchanged)\ntests/ui-phone-scroll-routes.spec.ts 12ms (unchanged)\ntests/ui-phone-scroll.spec.ts 43ms (unchanged)\ntests/ui-primitives.dom.test.tsx 9ms (unchanged)\ntests/ui-pwa.spec.ts 24ms (unchanged)\ntests/ui-route-coverage.spec.ts 65ms (unchanged)\ntests/ui-smoke.spec.ts 2720ms (unchanged)\ntests/ui-specifiers.spec.ts 25ms (unchanged)\ntests/ui-stress.spec.ts 41ms (unchanged)\ntests/ui-style-contract.spec.ts 16ms (unchanged)\ntests/ui-therapy-nav-scroll.spec.ts 10ms (unchanged)\ntests/ui-therapy-navigation-mockup.spec.ts 4ms (unchanged)\ntests/ui-tools-collapse.spec.ts 6ms (unchanged)\ntests/ui-tools-task-directory.spec.ts 8ms (unchanged)\ntests/ui-tools.spec.ts 950ms (unchanged)\ntests/ui-universal-search.spec.ts 37ms (unchanged)\ntests/ui-v2-announcements.dom.test.tsx 16ms (unchanged)\ntests/ui-v2-answer-safety.dom.test.tsx 62ms (unchanged)\ntests/ui-v2-components.dom.test.tsx 106ms (unchanged)\ntests/ui-v2-form-field.dom.test.tsx 11ms (unchanged)\ntests/ui-visual-artifacts.spec.ts 3ms (unchanged)\ntests/ui-visual-baseline.spec.ts 14ms (unchanged)\ntests/universal-search-owner.live.test.ts 7ms (unchanged)\ntests/universal-search-stream.test.ts 6ms (unchanged)\ntests/universal-search.test.ts 65ms (unchanged)\ntests/unknown-status-derivation.test.ts 7ms (unchanged)\ntests/upload-admission.test.ts 4ms (unchanged)\ntests/upload-duplicate-cleanup-ledger.test.ts 2ms (unchanged)\ntests/upload-ingress-limits.test.ts 2ms (unchanged)\ntests/upload-outcome.test.ts 4ms (unchanged)\ntests/upload-size-contract.test.ts 2ms (unchanged)\ntests/upload-size-precheck.dom.test.tsx 11ms (unchanged)\ntests/upload-structure.test.ts 13ms (unchanged)\ntests/use-answer-thread-bootstrap.test.ts 4ms (unchanged)\ntests/use-deferred-registry-search.dom.test.tsx 5ms (unchanged)\ntests/use-differential-search.dom.test.tsx 38ms (unchanged)\ntests/use-event-callback.dom.test.tsx 4ms (unchanged)\ntests/use-hide-on-scroll.dom.test.tsx 6ms (unchanged)\ntests/use-hide-on-scroll.test.ts 40ms (unchanged)\ntests/use-universal-search-stream.dom.test.tsx 13ms (unchanged)\ntests/use-viewer-gestures.dom.test.tsx 24ms (unchanged)\ntests/verify-phone-chrome.test.ts 14ms (unchanged)\ntests/verify-pr-local.test.ts 8ms (unchanged)\ntests/viewer-zoom.test.ts 3ms (unchanged)\ntests/visual-evidence-tabs.dom.test.tsx 17ms (unchanged)\ntests/visual-intelligence.test.ts 10ms (unchanged)\ntests/ward-output.test.ts 39ms (unchanged)\ntests/webhooks-chat-notify.test.ts 6ms (unchanged)\ntests/webhooks-railway-route.test.ts 7ms (unchanged)\ntests/webhooks-secret-auth.test.ts 6ms (unchanged)\ntests/webhooks-supabase-document-change-route.test.ts 13ms (unchanged)\ntests/worker-behavior.test.ts 4ms (unchanged)\ntests/worker-bundle.test.ts 6ms (unchanged)\ntests/worker-observability.test.ts 5ms (unchanged)\ntests/worker-python-lock.test.ts 3ms (unchanged)\ntests/worker-run-loop.test.ts 10ms (unchanged)\ntests/worker-runtime-control.test.ts 4ms (unchanged)\ntests/worker-runtime-validation.test.ts 3ms (unchanged)\ntests/worker-safe-logging.test.ts 4ms (unchanged)\ntests/worker-visual-capture.test.ts 7ms (unchanged)\ntests/xlsx-extraction-budget.test.ts 5ms (unchanged)\ntests/yaml-contract.test.ts 2ms (unchanged)\ntsconfig.json 5ms (unchanged)\ntsconfig.typecheck.json 1ms (unchanged)\nvitest.config.mts 6ms (unchanged)\nworker/assertion-tagging.ts 13ms (unchanged)\nworker/behavior.ts 4ms (unchanged)\nworker/embedding-fields.ts 15ms (unchanged)\nworker/index.ts 3ms (unchanged)\nworker/main.ts 266ms (unchanged)\nworker/observability.ts 6ms (unchanged)\nworker/prerequisites.ts 8ms (unchanged)\nworker/python/fixtures/README.md 12ms (unchanged)\nworker/run-loop.ts 7ms (unchanged)\nworker/runtime-control.ts 14ms (unchanged)\nworker/table-facts.ts 34ms (unchanged)\nworker/types.ts 3ms (unchanged)\nworker/validate-runtime.ts 21ms (unchanged)\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 verify:pr-local\n> node scripts/verify-pr-local.mjs\n\nChanged files: data/medication-interaction-index.json, docs/branch-review-ledger.md, docs/codebase-index.md, docs/design-system/COMPONENTS.md, docs/design-system/adoption-manifest.json, docs/samd-classification-medication-considerations.md, docs/scripts-index.md, docs/search-chrome-behaviour.md, package.json, scripts/build-medication-interaction-index.ts, src/app/globals.css, src/components/ClinicalDashboard.tsx, src/components/clinical-dashboard/global-search-shell.tsx, src/components/clinical-dashboard/master-search-header.tsx, src/components/clinical-dashboard/medication-considerations.tsx, src/components/clinical-dashboard/medication-nav-header.tsx, src/components/clinical-dashboard/medication-prescribing-workspace.tsx, src/components/clinical-dashboard/medication-record-page.tsx, src/components/clinical-dashboard/mobile-composer-reserve.ts, src/components/clinical-dashboard/patient-details-dock-action.tsx, src/components/clinical-dashboard/patient-profile-context.tsx, src/components/clinical-dashboard/patient-profile-panel.tsx, src/lib/medication-interaction-lexicon.ts, src/lib/medication-interactions.ts, src/lib/medication-patient-alerts.ts, src/lib/mode-home-composer.ts, src/lib/patient-profile-storage.ts, tests/helpers/style-contracts.ts, tests/in-page-nav-route-sections.dom.test.tsx, tests/medication-interaction-lexicon-coverage.test.ts, tests/medication-interaction-surfaces.dom.test.tsx, tests/medication-interactions.test.ts, tests/medication-record-page.dom.test.tsx, tests/patient-details-dock-action.dom.test.tsx, tests/patient-profile-medications.dom.test.tsx, tests/phone-dock-addon-contract.test.ts\n\n> npm run check:runtime\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:runtime\n> node scripts/run-tsx.mjs scripts/check-runtime.ts\n\n[Runtime Check] PASS: Node runtime 24.19.0 matches required Node 24.x.\n[Runtime Check] PASS: npm runtime 11.17.0 matches required npm 11.x.\n\n> npm run check:installed-lock-parity\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:installed-lock-parity\n> node scripts/check-installed-lock-parity.mjs\n\n[installed-lock-parity] next: 16.3.0\n[installed-lock-parity] react: 19.2.8\n[installed-lock-parity] react-dom: 19.2.8\n[installed-lock-parity] eslint: 9.39.5\n[installed-lock-parity] playwright: 1.62.1\n[installed-lock-parity] typescript: 6.0.3\n[installed-lock-parity] vitest: 4.1.10\n[installed-lock-parity] full tree: 760 package locations; 51566 files.\n\n> npm run format:changed\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 format:changed\n> node scripts/check-format-changed.mjs\n\nChecking formatting...\nAll matched files use Prettier code style!\n\n> npm run check:npm-ci-dry-run\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:npm-ci-dry-run\n> npm ci --dry-run --ignore-scripts\n\n\nup to date in 2s\n\n205 packages are looking for funding\n run `npm fund` for details\n\n> npm run sitemap:check\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 sitemap:check\n> node scripts/run-tsx.mjs scripts/generate-site-map.ts --check\n\n\n> npm run docs:check-index\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-index\n> node scripts/check-codebase-index-coverage.mjs\n\ndocs/codebase-index.md coverage OK: all 50 repository roots/modules/routes and all schema tables are indexed.\n\n> npm run docs:check-inventory\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-inventory\n> node scripts/update-docs-inventory.mjs --check\n\nDocs inventory current: 228 script files, 239 npm scripts.\n\n> npm run docs:check-scripts\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-scripts\n> node scripts/check-docs-script-refs.mjs\n\ndocs script-ref check passed: 444 npm-run reference(s) resolve to real scripts.\n\n> npm run docs:check-links\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-links\n> node scripts/check-docs-links.mjs\n\ndocs link check passed: 1659 repo path references resolve.\n\n> npm run check:branch-review-ledger\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:branch-review-ledger\n> node scripts/check-branch-review-ledger.mjs --self-test && node scripts/branch-review-ledger.mjs --self-test && node scripts/merge-branch-review-ledger.mjs --self-test && node scripts/check-branch-review-ledger.mjs\n\nbranch-review-ledger self-test passed.\nbranch-review-ledger self-test passed.\nmerge-branch-review-ledger self-test passed.\nBranch review ledger guard passed: 867 live table records + 1206 archived (867 under the 2026-07-29 machine-readable contract), ledger merge active, six cells each, no conflict markers, mojibake, heading records, or duplicates.\n\n> npm run check:outstanding-issues\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:outstanding-issues\n> node scripts/check-outstanding-issues.mjs --self-test && node scripts/outstanding-issues.mjs --self-test && node scripts/check-outstanding-issues.mjs\n\noutstanding-issues self-test passed.\noutstanding-issues writer self-test passed.\nOutstanding-issues guard passed: 307 rows (112 open, 195 archived), unique ids, next-id=310 above the highest, no merge driver, no ids deleted from base 8af658690773.\n\n> npm run lint\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 lint\n> node scripts/run-heavy.mjs --npm-script lint:internal\n\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 lint:internal\n> node --max-old-space-size=8192 ./node_modules/eslint/bin/eslint.js src tests scripts worker supabase playwright eslint.config.mjs next.config.ts playwright.config.ts playwright.visual.config.ts vitest.config.mts --max-warnings 0 --no-error-on-unmatched-pattern --cache --cache-location node_modules/.cache/eslint/\n\n\n> npm run typecheck\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 typecheck\n> node scripts/run-heavy.mjs --npm-script typecheck:internal\n\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 typecheck:internal\n> node ./node_modules/typescript/bin/tsc -p tsconfig.typecheck.json --noEmit --tsBuildInfoFile /tmp/clinical-kb-tsc-cache/3fd60c93aeae7e0c6623/tsconfig.tsbuildinfo\n\n\n> npm run test\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 test\n> node scripts/run-vitest.mjs run --reporter=dot\n\n\n RUN v4.1.10 /workspace/Database\n\n·····················································································································································································································································································································································································stderr | tests/signed-image.dom.test.tsx > SignedImage failure/retry (jsdom) > opens the fullscreen lightbox when a loaded zoomable image is activated, and closes on Escape\nImage with src \"http://localhost:3000/demo/airway.png\" has \"fill\" and parent element with invalid \"position\". Provided \"static\" should be one of absolute,fixed,relative.\nImage with src \"http://localhost:3000/demo/airway.png\" has \"fill\" and a height value of 0. This is likely because the parent element of the image has not been styled to have a set height.\n\n·········stderr | tests/signed-image.dom.test.tsx > SignedImage expand affordance (jsdom) > keeps the expand chip visible on pointers that cannot hover\nImage with src \"http://localhost:3000/demo/wide-table.png\" has \"fill\" and parent element with invalid \"position\". Provided \"static\" should be one of absolute,fixed,relative.\nImage with src \"http://localhost:3000/demo/wide-table.png\" has \"fill\" and a height value of 0. This is likely because the parent element of the image has not been styled to have a set height.\n\n···································································································································································Not implemented: navigation to another Document\n···················································································································································································································································································································································································stdout | tests/property-document-frame.dom.test.tsx\n[fast-check] replay seed: 424242\n\n····························································································································································································································································································································································································································································································································································································································································································································stderr | tests/private-access-routes.test.ts > private document API access > falls back to visible demo search only outside production when Supabase rejects the API key\n[clinical-kb] Supabase unavailable — serving DEMO data as a non-production fallback. Live search/answer paths are NOT being exercised. Check NEXT_PUBLIC_SUPABASE_URL / SUPABASE_SERVICE_ROLE_KEY if this is unexpected.\n\n·stderr | tests/private-access-routes.test.ts > private document API access > does not fall back to demo search in production when Supabase rejects the API key\n{\"level\":\"error\",\"message\":\"Search failed. Retry with a narrower question.\",\"timestamp\":\"2026-08-12T20:18:14.069Z\",\"status\":500,\"name\":\"PublicApiError\",\"details\":\"{\\\"code\\\":\\\"search_unknown_failure\\\",\\\"causeName\\\":\\\"Error\\\",\\\"causeMessage\\\":\\\"Unregistered API key\\\",\\\"sqlState\\\":null}\",\"stack\":\"at POST ([path])\",\"code\":\"search_unknown_failure\"}\n\n·stderr | tests/private-access-routes.test.ts > private document API access > logs failed search telemetry against the parsed query instead of an unknown placeholder\n{\"level\":\"error\",\"message\":\"Search failed. Retry with a narrower question.\",\"timestamp\":\"2026-08-12T20:18:14.422Z\",\"status\":500,\"name\":\"PublicApiError\",\"details\":\"{\\\"code\\\":\\\"search_unknown_failure\\\",\\\"causeName\\\":\\\"Error\\\",\\\"causeMessage\\\":\\\"Unregistered API key\\\",\\\"sqlState\\\":null}\",\"stack\":\"at POST ([path])\",\"code\":\"search_unknown_failure\"}\n\n·stderr | tests/private-access-routes.test.ts > private document API access > falls back to visible demo answers only outside production when Supabase rejects the API key\n[clinical-kb] Supabase unavailable — serving DEMO data as a non-production fallback. Live search/answer paths are NOT being exercised. Check NEXT_PUBLIC_SUPABASE_URL / SUPABASE_SERVICE_ROLE_KEY if this is unexpected.\n\n····stderr | tests/private-access-routes.test.ts > private document API access > falls back to a final streamed demo answer outside production when Supabase rejects the API key\n[clinical-kb] Supabase unavailable — serving DEMO data as a non-production fallback. Live search/answer paths are NOT being exercised. Check NEXT_PUBLIC_SUPABASE_URL / SUPABASE_SERVICE_ROLE_KEY if this is unexpected.\n\nstderr | tests/private-access-routes.test.ts > private document API access > does not stream demo fallback in production when Supabase rejects the API key\n{\"level\":\"error\",\"message\":\"Unregistered API key\",\"timestamp\":\"2026-08-12T20:18:15.326Z\",\"name\":\"Error\",\"stack\":\"at resolveSearchScope ([path])\"}\n\n···········································stderr | tests/rag-trust.test.ts > RAG trust validation > falls back safely (ungrounded, no citation back-fill) when model JSON is invalid (B5)\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: `Unexpected token 'o', \"not json\" is not valid JSON`,\n stack: 'at JSON.parse ()'\n}\n\n··stderr | tests/rag-trust.test.ts > RAG trust validation > runs the numeric gate on parse-failure prose and flags unverified doses (B5)\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: `Unexpected token 'G', \"Give 500 mg now.\" is not valid JSON`,\n stack: 'at JSON.parse ()'\n}\n\n······································································stderr | tests/rag-answer-fallback.test.ts > RAG structured-output fallback > retries malformed fast output and fails closed after strong generation also fails\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: 'Unterminated string in JSON at position 50 (line 1 column 51)',\n stack: 'at JSON.parse ()'\n}\n\nstderr | tests/rag-answer-fallback.test.ts > RAG structured-output fallback > retries malformed fast output and fails closed after strong generation also fails\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: 'Unterminated string in JSON at position 50 (line 1 column 51)',\n stack: 'at JSON.parse ()'\n}\n\nstderr | tests/rag-answer-fallback.test.ts > RAG structured-output fallback > retries malformed fast output and fails closed after strong generation also fails\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: 'Unterminated string in JSON at position 50 (line 1 column 51)',\n stack: 'at JSON.parse ()'\n}\n\n··············································································································································································································································stderr | tests/test-runner-safety.test.ts > repository-wide heavyweight lock > allows an explicit force-lock-release to replace a live owner\n[AUDIT] Breaking forced heavyweight coordinator leases at /tmp/clinical-kb-force-lock-OXQm7G/clinical-kb-heavy-locks/65bf44488689a75993a7.lock (owners 76103)\n\n···································································································································································································································································································································································································································································································································································································································································································································································stderr | tests/eval-utils.test.ts > RAG eval source identity matching > retries transient provider rate-limit errors for eval operations\n[eval] Provider rate limit during test-rate-limit; retrying attempt 2/2 in 1ms.\n\nstderr | tests/eval-utils.test.ts > RAG eval source identity matching > retries structured provider rate-limit errors that are not Error instances\n[eval] Provider rate limit during test-structured-rate-limit; retrying attempt 2/2 in 1ms.\n\nstderr | tests/eval-utils.test.ts > RAG eval source identity matching > keeps progress only from the successful provider attempt\n[eval] Provider rate limit during test-progress-rate-limit; retrying attempt 2/2 in 1ms.\n\n·····························································································································································································································································································································································································································································································································································································································································································································································································································································································································································································································································································································································································································-·········································································································································································································································································stderr | tests/verify-phone-chrome.test.ts > runPhoneChromeStages > aborts on the first non-zero stage exit and never continues\n[phone-chrome] stage \"focused-browser\" failed; exiting with code 1\n\n··································································································································································stdout | tests/property-accessible-table.test.ts\n[fast-check] replay seed: 424242\n\n·························································································································································································································································································································································································································································································································································································································stdout | tests/property-numeric-token-preservation.test.ts\n[fast-check] replay seed: 424242\n\n···············································································································································································································································································································stdout | tests/property-chunking.test.ts\n[fast-check] replay seed: 424242\n\n·········································································check:function-grants: FAIL — 1 SECURITY DEFINER function(s) in /tmp/fn-grants-PeZ6T9/leaky.sql are executable by PUBLIC/anon:\n - public.leaky (schema.sql:2) — defined after the blanket revoke with no EXECUTE revoke FROM public\n\nFix: add `revoke execute on function public.() from public, anon, authenticated;` (and grant execute only to the intended role, e.g. service_role) in the migration that defines it, then reconcile schema.sql. If genuinely safe, allowlist it with a reason in scripts/check-function-grants.mjs.\n··························stderr | tests/assertion-tagging.test.ts > annotateChunkAssertions > fails open to an empty map when the runner throws\nAssertion tagging failed; continuing without assertion metadata: python exploded\n\n·····stderr | tests/assertion-tagging.test.ts > annotateChunkAssertions > fails open to an empty map on garbage output\nAssertion tagging failed; continuing without assertion metadata: Unexpected token 'T', \"Traceback \"... is not valid JSON\n\n····························································································check:function-grants: FAIL — 1 SECURITY DEFINER function(s) in /tmp/fn-grants-PeZ6T9/anon-only-revoke.sql are executable by PUBLIC/anon:\n - public.anononly (schema.sql:2) — defined after the blanket revoke with no EXECUTE revoke FROM public\n\nFix: add `revoke execute on function public.() from public, anon, authenticated;` (and grant execute only to the intended role, e.g. service_role) in the migration that defines it, then reconcile schema.sql. If genuinely safe, allowlist it with a reason in scripts/check-function-grants.mjs.\n··············································································check:function-grants: FAIL — 1 SECURITY DEFINER function(s) in /tmp/fn-grants-PeZ6T9/reopened.sql are executable by PUBLIC/anon:\n - public.reopened (schema.sql:2) — explicitly grants EXECUTE to PUBLIC/anon\n\nFix: add `revoke execute on function public.() from public, anon, authenticated;` (and grant execute only to the intended role, e.g. service_role) in the migration that defines it, then reconcile schema.sql. If genuinely safe, allowlist it with a reason in scripts/check-function-grants.mjs.\n················································check:function-grants: FAIL — a \"grant execute on all functions in schema public to public/anon\" re-opens EXECUTE on every function and defeats the blanket revoke. Remove it and grant to the intended role (e.g. service_role) instead.\n·····························································································································································check:function-grants: FAIL — no schema-wide \"revoke execute on all functions in schema public from ... public\" statement found in /tmp/fn-grants-PeZ6T9/no-blanket.sql. That baseline revoke strips the default anon EXECUTE grant; its removal is itself the regression this guard exists to catch.\n···························································································································································································································································································································································································stderr | tests/supabase-errors.test.ts > Supabase API key configuration error detection > maps disabled legacy keys to the demo fallback reason outside production\n[clinical-kb] Supabase unavailable — serving DEMO data as a non-production fallback. Live search/answer paths are NOT being exercised. Check NEXT_PUBLIC_SUPABASE_URL / SUPABASE_SERVICE_ROLE_KEY if this is unexpected.\n\n·················································································································x·····stdout | tests/property-seed-validation.test.ts\n[fast-check] replay seed: 424242\n\n·······xxx·\n\n⎯⎯⎯⎯⎯⎯⎯ Failed Tests 4 ⎯⎯⎯⎯⎯⎯⎯\n\n FAIL |node| tests/pr-handoff-stop.test.ts > pr-handoff-stop hook > denies quoted compound follow commands when jq is unavailable\nError: Test timed out in 30000ms.\nIf this is a long-running test, pass a timeout value as the last argument or configure it globally with \"testTimeout\".\n ❯ tests/pr-handoff-stop.test.ts:185:3\n 183| });\n 184|\n 185| it(\"denies quoted compound follow commands when jq is unavailable\", …\n | ^\n 186| const { root, gitDir } = freshRepo();\n 187| const marker = join(gitDir, \"claude-pr-handoff-sess-quoted\");\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[1/4]⎯\n\n FAIL |node| tests/pr-handoff-stop.test.ts > pr-handoff-stop hook > still detects gh pr create after a quoted arg when jq is unavailable\nError: Test timed out in 30000ms.\nIf this is a long-running test, pass a timeout value as the last argument or configure it globally with \"testTimeout\".\n ❯ tests/pr-handoff-stop.test.ts:208:3\n 206| });\n 207|\n 208| it(\"still detects gh pr create after a quoted arg when jq is unavail…\n | ^\n 209| const { root } = freshRepo();\n 210| const out = runHook(\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[2/4]⎯\n\n FAIL |node| tests/pr-handoff-stop.test.ts > pr-handoff-stop hook > does not lock from a printed gh pr create token in tool_response when jq is unavailable\nError: Test timed out in 30000ms.\nIf this is a long-running test, pass a timeout value as the last argument or configure it globally with \"testTimeout\".\n ❯ tests/pr-handoff-stop.test.ts:226:3\n 224| });\n 225|\n 226| it(\"does not lock from a printed gh pr create token in tool_response…\n | ^\n 227| const { root } = freshRepo();\n 228| const out = runHook(\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[3/4]⎯\n\n FAIL |node| tests/pr-handoff-stop.test.ts > pr-handoff-stop hook > ignores a tool_input URL after tool_response when jq is unavailable\nError: Test timed out in 30000ms.\nIf this is a long-running test, pass a timeout value as the last argument or configure it globally with \"testTimeout\".\n ❯ tests/pr-handoff-stop.test.ts:244:3\n 242| });\n 243|\n 244| it(\"ignores a tool_input URL after tool_response when jq is unavaila…\n | ^\n 245| const { root } = freshRepo();\n 246| // Key order matters for the jq-less suffix extractor: response fi…\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[4/4]⎯\n\n\n Test Files 1 failed | 566 passed (567)\n Tests 4 failed | 6211 passed | 1 skipped (6216)\n Start at 20:13:18\n Duration 953.80s (transform 147.20s, setup 103.54s, import 570.09s, tests 1681.34s, environment 432.58s)\n\n\nPR-local verification summary:\n- completed: check:runtime, check:installed-lock-parity, format:changed, check:npm-ci-dry-run, sitemap:check, docs:check-index, docs:check-inventory, docs:check-scripts, docs:check-links, check:branch-review-ledger, check:outstanding-issues, lint, typecheck\n- failed: test (exit 1)\n- not reached: build, check:rag:fixtures\n","/bin/bash -lc 'npm run format && npm run verify:pr-local'",[1743],1326091,1,"exec-f18e15d1-bd44-4c81-af9f-be55f1d2d0a6","70532",{"_925":1744,"_96":941},"npm run format && npm run verify:pr-local",{"_881":1746,"_860":861,"_883":867},{"_944":1747,"_45":-5,"_888":1748,"_947":1749,"_96":1055},"call_OqJEQf7SBiRtQIp2HhbiNQJS",{"_893":867},{"_355":1750,"_951":-5},[1751,1752],{"_49":1754,"_96":955},{"_49":1753,"_96":955},"xx·\n\n⎯⎯⎯⎯⎯⎯⎯ Failed Tests 4 ⎯⎯⎯⎯⎯⎯⎯\n\n FAIL |node| tests/pr-handoff-stop.test.ts > pr-handoff-stop hook > denies quoted compound follow commands when jq is unavailable\nError: Test timed out in 30000ms.\nIf this is a long-running test, pass a timeout value as the last argument or configure it globally with \"testTimeout\".\n ❯ tests/pr-handoff-stop.test.ts:185:3\n 183| });\n 184|\n 185| it(\"denies quoted compound follow commands when jq is unavailable\", …\n | ^\n 186| const { root, gitDir } = freshRepo();\n 187| const marker = join(gitDir, \"claude-pr-handoff-sess-quoted\");\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[1/4]⎯\n\n FAIL |node| tests/pr-handoff-stop.test.ts > pr-handoff-stop hook > still detects gh pr create after a quoted arg when jq is unavailable\nError: Test timed out in 30000ms.\nIf this is a long-running test, pass a timeout value as the last argument or configure it globally with \"testTimeout\".\n ❯ tests/pr-handoff-stop.test.ts:208:3\n 206| });\n 207|\n 208| it(\"still detects gh pr create after a quoted arg when jq is unavail…\n | ^\n 209| const { root } = freshRepo();\n 210| const out = runHook(\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[2/4]⎯\n\n FAIL |node| tests/pr-handoff-stop.test.ts > pr-handoff-stop hook > does not lock from a printed gh pr create token in tool_response when jq is unavailable\nError: Test timed out in 30000ms.\nIf this is a long-running test, pass a timeout value as the last argument or configure it globally with \"testTimeout\".\n ❯ tests/pr-handoff-stop.test.ts:226:3\n 224| });\n 225|\n 226| it(\"does not lock from a printed gh pr create token in tool_response…\n | ^\n 227| const { root } = freshRepo();\n 228| const out = runHook(\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[3/4]⎯\n\n FAIL |node| tests/pr-handoff-stop.test.ts > pr-handoff-stop hook > ignores a tool_input URL after tool_response when jq is unavailable\nError: Test timed out in 30000ms.\nIf this is a long-running test, pass a timeout value as the last argument or configure it globally with \"testTimeout\".\n ❯ tests/pr-handoff-stop.test.ts:244:3\n 242| });\n 243|\n 244| it(\"ignores a tool_input URL after tool_response when jq is unavaila…\n | ^\n 245| const { root } = freshRepo();\n 246| // Key order matters for the jq-less suffix extractor: response fi…\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[4/4]⎯\n\n\n Test Files 1 failed | 566 passed (567)\n Tests 4 failed | 6211 passed | 1 skipped (6216)\n Start at 20:13:18\n Duration 953.80s (transform 147.20s, setup 103.54s, import 570.09s, tests 1681.34s, environment 432.58s)\n\n\nPR-local verification summary:\n- completed: check:runtime, check:installed-lock-parity, format:changed, check:npm-ci-dry-run, sitemap:check, docs:check-index, docs:check-inventory, docs:check-scripts, docs:check-links, check:branch-review-ledger, check:outstanding-issues, lint, typecheck\n- failed: test (exit 1)\n- not reached: build, check:rag:fixtures\n","Script completed\nWall time 14.0 seconds\nOutput:\n",{"_881":1756,"_860":861,"_883":867},{"_1063":1757,"_944":1747,"_45":1758,"_888":1759,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"74\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd78a6d708193be8416a7348e3170",{"_893":867},{"_881":1761,"_860":861,"_883":867},{"_944":1762,"_45":-5,"_888":1763,"_204":-5,"_947":1764,"_96":949},"call_glTQa50Dy1pDL5qqQTxUF1Ve",{"_893":867},"Script running with cell ID 74\nWall time 10.0 seconds\nOutput:\n",{"_881":1766,"_860":861,"_883":867},{"_944":1762,"_45":1767,"_972":1768,"_888":1769,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd779dbf0819391ddf128f55481f3","const r = await tools.write_stdin({session_id:70532,chars:\"\",yield_time_ms:30000,max_output_tokens:12000});\ntext(r.output);\n",{"_893":867},{"_881":1771,"_860":861,"_883":867},{"_944":1772,"_45":-5,"_888":1773,"_947":1774,"_96":1055},"call_O6jyItuw8NGWRRZRb808jafL",{"_893":867},{"_355":1775,"_951":-5},[1776,1777],{"_49":1339,"_96":955},{"_49":1778,"_96":955},"x",{"_881":1780,"_860":861,"_883":867},{"_1063":1781,"_944":1772,"_45":1782,"_888":1783,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"73\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd765eb2881939939e0b6cca2f11a",{"_893":867},{"_881":1785,"_860":861,"_883":867},{"_944":1786,"_45":-5,"_888":1787,"_204":-5,"_947":1788,"_96":949},"call_pTrKNDW4dC2hNcQwrs0GPthX",{"_893":867},"Script running with cell ID 73\nWall time 10.0 seconds\nOutput:\n",{"_881":1790,"_860":861,"_883":867},{"_944":1786,"_45":1791,"_972":1768,"_888":1792,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd759ab40819395879ba219ae9ddb",{"_893":867},{"_881":1794,"_860":861,"_883":867},{"_944":1795,"_45":-5,"_888":1796,"_947":1797,"_96":1055},"call_EVOmQb8sJ44150Y0ybSeqjZP",{"_893":867},{"_355":1798,"_951":-5},[1799,1800],{"_49":1801,"_96":955},{"_49":341,"_96":955},"Script completed\nWall time 16.9 seconds\nOutput:\n",{"_881":1803,"_860":861,"_883":867},{"_1063":1804,"_944":1795,"_45":1805,"_888":1806,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"72\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd744b3fc8193977e15638e9ea300",{"_893":867},{"_881":1808,"_860":861,"_883":867},{"_944":1809,"_45":-5,"_888":1810,"_204":-5,"_947":1811,"_96":949},"call_j5PUT9UyS1RI6aavdkCQdbSy",{"_893":867},"Script running with cell ID 72\nWall time 10.0 seconds\nOutput:\n",{"_881":1813,"_860":861,"_883":867},{"_944":1809,"_45":1814,"_972":1768,"_888":1815,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd7373bbc819389ca33d0dc257d44",{"_893":867},{"_881":1817,"_860":861,"_883":867},{"_944":1818,"_45":-5,"_888":1819,"_947":1820,"_96":1055},"call_R1mfmifiMDZ9J986StaIqKmM",{"_893":867},{"_355":1821,"_951":-5},[1822,1823],{"_49":1825,"_96":955},{"_49":1824,"_96":955},"····x·····stdout | tests/property-seed-validation.test.ts\n[fast-check] replay seed: 424242\n\n·······","Script completed\nWall time 18.3 seconds\nOutput:\n",{"_881":1827,"_860":861,"_883":867},{"_1063":1828,"_944":1818,"_45":1829,"_888":1830,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"71\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd7231e3081939e4144f2df61c28b",{"_893":867},{"_881":1832,"_860":861,"_883":867},{"_944":1833,"_45":-5,"_888":1834,"_204":-5,"_947":1835,"_96":949},"call_kwdqDz5KcY5lBDxYla8n8HOM",{"_893":867},"Script running with cell ID 71\nWall time 10.0 seconds\nOutput:\n",{"_881":1837,"_860":861,"_883":867},{"_944":1833,"_45":1838,"_972":1768,"_888":1839,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd7176c808193a6e1f8660bf8d84d",{"_893":867},{"_881":1841,"_860":861,"_883":867},{"_884":-5,"_905":1842,"_45":1843,"_888":1844,"_909":1845,"_96":911},"gAAAAABqfNcXp3hs-ZlRgiiZtG61Ax6M5eFwlafEwg5k11L0DVBRmfkVjJbXFk2nc0RxRyp5C_qWcM7SzXm3Bc5_8ywH-xW5ZG9lqLwwHZqgR1NcT4Sh9W6oDXKyMq5lsQY8Qq52WF2KykH2socIL8I9qoAYV1mRAy-jkY_wfURjjre86rck1GKkc4gpBQITOC2iec0givfZ9PIFINb7a-vLDF5Ct33Uofvrt4pU59PceGtwBEHI3rs72qMdybPHg9ExqjsUFRz6LVBdzsfwc_gbbCiYoRaZUzlnawPE7Y6VXeKnAeuV4bfQaz8AEfiq8wVutqEfGq_i--XEglHMUDE1IPN8Dv2sMTqdlr0K9pNCccOigHl3sxLHcxg3PQTBrmHrWht5ktquvTeqGE-ifcGDTmJ4OVnZSydcAneb1TnuJaHlOHCV5J81iwA7RTlUz5rhKJM4wwY7UNNBuuQTASJXhMpHcEAX0yIwELudBsNbKj1-rwTQ8lVjHk1Euyb7JxFijGxViHZdPDmopNvpy9OqOaDCjLvyGHKOJMw67btJZBoqCMzn54o6vNzyU4OjAiWWPCC9Pb8qZdOP-ZG2Ajqn6h46gcAHvAxVAR0eWwtgteU1CRA_IFFHrzvdgDgAI-WShYaYn5CWQteSXBZZtSDGvvF0PHPyw8KLouO04IvBwMm9lythPZn5gr3tfkzkao1otDVbfFQxvPJbCGE8yqkZvX_IbbgytRXJehrXeaX0e3AoyurAql7WPAfLvTZ-X-jHJyvT1tikdrlQxB5eO1QvmpUipLhTAkP5jyE-SXmRUVqP0pFUUIddLXrvaB2T3XTF9Xa3qyZaTqVTkUVRFv_AvbQsV1yCOF31Xo2j76q4uDfiy8tNbdQkSYcw9Ht0ZO6FeQV9f57P89ElQNraI_Ng0_5PxTBJOfTW1nirWOgsREuYpyjHTbc26of69_DDadmgglLUWpNKnEf7eRb7voG0ku3cy3KSWQ==","rs_0e577ca7e8f114c6016a7cd716b6a4819397c10d6a5999a934",{"_893":867},[],{"_899":1847,"_881":1848,"_860":861,"_883":867},1786566423421,{"_884":1849,"_45":1843,"_909":1850,"_96":911},[],[],{"_881":1852,"_860":861,"_883":867},{"_944":1853,"_45":-5,"_888":1854,"_947":1855,"_96":1055},"call_Ib1XYhZ8iXZjuv2a7WZ8gUED",{"_893":867},{"_355":1856,"_951":-5},[1857,1858],{"_49":1627,"_96":955},{"_49":1859,"_96":955},"··································stderr | tests/supabase-errors.test.ts > Supabase API key configuration error detection > maps disabled legacy keys to the demo fallback reason outside production\n[clinical-kb] Supabase unavailable — serving DEMO data as a non-production fallback. Live search/answer paths are NOT being exercised. Check NEXT_PUBLIC_SUPABASE_URL / SUPABASE_SERVICE_ROLE_KEY if this is unexpected.\n\n·············································································································",{"_881":1861,"_860":861,"_883":867},{"_1063":1862,"_944":1853,"_45":1863,"_888":1864,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"70\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd701ca1881939ed6bec48c71052d",{"_893":867},{"_881":1866,"_860":861,"_883":867},{"_944":1867,"_45":-5,"_888":1868,"_204":-5,"_947":1869,"_96":949},"call_ktT8zFfU11zbNp8hEOWOUr3g",{"_893":867},"Script running with cell ID 70\nWall time 10.1 seconds\nOutput:\n",{"_881":1871,"_860":861,"_883":867},{"_944":1867,"_45":1872,"_972":1768,"_888":1873,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd6f5600c8193b9b479df1e99f3af",{"_893":867},{"_881":1875,"_860":861,"_883":867},{"_944":1876,"_45":-5,"_888":1877,"_947":1878,"_96":1055},"call_9EinP4ZOVPBeWIvB1xThwbFw",{"_893":867},{"_355":1879,"_951":-5},[1880,1881],{"_49":1883,"_96":955},{"_49":1882,"_96":955},"·····································································································································································································································································","Script completed\nWall time 16.2 seconds\nOutput:\n",{"_881":1885,"_860":861,"_883":867},{"_1063":1886,"_944":1876,"_45":1887,"_888":1888,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"69\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd6e25b20819385e912fd196672ec",{"_893":867},{"_881":1890,"_860":861,"_883":867},{"_944":1891,"_45":-5,"_888":1892,"_204":-5,"_947":1893,"_96":949},"call_LHzHT611PW8WMwkVnavZ4bjN",{"_893":867},"Script running with cell ID 69\nWall time 10.1 seconds\nOutput:\n",{"_881":1895,"_860":861,"_883":867},{"_944":1891,"_45":1896,"_972":1768,"_888":1897,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd6d3f27c8193a8250945fc0f6771",{"_893":867},{"_881":1899,"_860":861,"_883":867},{"_944":1900,"_45":-5,"_888":1901,"_947":1902,"_96":1055},"call_4knqz17fzHuSExTuanFMVtvH",{"_893":867},{"_355":1903,"_951":-5},[1904,1905],{"_49":1907,"_96":955},{"_49":1906,"_96":955},"···························································check:function-grants: FAIL — no schema-wide \"revoke execute on all functions in schema public from ... public\" statement found in /tmp/fn-grants-PeZ6T9/no-blanket.sql. That baseline revoke strips the default anon EXECUTE grant; its removal is itself the regression this guard exists to catch.\n····················································································","Script completed\nWall time 17.0 seconds\nOutput:\n",{"_881":1909,"_860":861,"_883":867},{"_1063":1910,"_944":1900,"_45":1911,"_888":1912,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"68\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd6c0a60c8193b024e3466708182e",{"_893":867},{"_881":1914,"_860":861,"_883":867},{"_944":1915,"_45":-5,"_888":1916,"_204":-5,"_947":1917,"_96":949},"call_hTehVQX01u2eZiu0eCn482OC",{"_893":867},"Script running with cell ID 68\nWall time 10.1 seconds\nOutput:\n",{"_881":1919,"_860":861,"_883":867},{"_944":1915,"_45":1920,"_972":1768,"_888":1921,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd6b33ee48193afba3a86c4b9b0ad",{"_893":867},{"_881":1923,"_860":861,"_883":867},{"_944":1924,"_45":-5,"_888":1925,"_947":1926,"_96":1055},"call_qONvxE9IBqnUAJSn5xYQVSUV",{"_893":867},{"_355":1927,"_951":-5},[1928,1929],{"_49":1931,"_96":955},{"_49":1930,"_96":955},"····································check:function-grants: FAIL — a \"grant execute on all functions in schema public to public/anon\" re-opens EXECUTE on every function and defeats the blanket revoke. Remove it and grant to the intended role (e.g. service_role) instead.\n··································································································","Script completed\nWall time 17.9 seconds\nOutput:\n",{"_881":1933,"_860":861,"_883":867},{"_1063":1934,"_944":1924,"_45":1935,"_888":1936,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"67\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd69ed4148193bf90e90780bee281",{"_893":867},{"_881":1938,"_860":861,"_883":867},{"_944":1939,"_45":-5,"_888":1940,"_204":-5,"_947":1941,"_96":949},"call_EWb4t1kE94jiX7473XvREZhC",{"_893":867},"Script running with cell ID 67\nWall time 10.1 seconds\nOutput:\n",{"_881":1943,"_860":861,"_883":867},{"_944":1939,"_45":1944,"_972":1768,"_888":1945,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd691d7388193b29b6e3aa2c13eed",{"_893":867},{"_881":1947,"_860":861,"_883":867},{"_944":1948,"_45":-5,"_888":1949,"_947":1950,"_96":1055},"call_Kx6mAbRbP043IPyvKsy1KSAY",{"_893":867},{"_355":1951,"_951":-5},[1952,1953],{"_49":1704,"_96":955},{"_49":1954,"_96":955},"·························································································check:function-grants: FAIL — 1 SECURITY DEFINER function(s) in /tmp/fn-grants-PeZ6T9/anon-only-revoke.sql are executable by PUBLIC/anon:\n - public.anononly (schema.sql:2) — defined after the blanket revoke with no EXECUTE revoke FROM public\n\nFix: add `revoke execute on function public.() from public, anon, authenticated;` (and grant execute only to the intended role, e.g. service_role) in the migration that defines it, then reconcile schema.sql. If genuinely safe, allowlist it with a reason in scripts/check-function-grants.mjs.\n··············································································check:function-grants: FAIL — 1 SECURITY DEFINER function(s) in /tmp/fn-grants-PeZ6T9/reopened.sql are executable by PUBLIC/anon:\n - public.reopened (schema.sql:2) — explicitly grants EXECUTE to PUBLIC/anon\n\nFix: add `revoke execute on function public.() from public, anon, authenticated;` (and grant execute only to the intended role, e.g. service_role) in the migration that defines it, then reconcile schema.sql. If genuinely safe, allowlist it with a reason in scripts/check-function-grants.mjs.\n············",{"_881":1956,"_860":861,"_883":867},{"_1063":1957,"_944":1948,"_45":1958,"_888":1959,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"66\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd67b0e888193a6e1b30ec7ffd4d1",{"_893":867},{"_881":1961,"_860":861,"_883":867},{"_944":1962,"_45":-5,"_888":1963,"_204":-5,"_947":1964,"_96":949},"call_4ZuvxFW8o0LLwQDAZwYMpQE1",{"_893":867},"Script running with cell ID 66\nWall time 10.1 seconds\nOutput:\n",{"_881":1966,"_860":861,"_883":867},{"_944":1962,"_45":1967,"_972":1768,"_888":1968,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd66e05b8819383980bf18ff8b848",{"_893":867},{"_881":1970,"_860":861,"_883":867},{"_884":-5,"_905":1971,"_45":1972,"_888":1973,"_909":1974,"_96":911},"gAAAAABqfNZucOGNbE9qe8moCAPAxRw-YCTkeYbJVVqVUoI4r61s9TXv4k-kaUB1k9P86Nh3q4UZfoGOZEYniqxZYuFs83AmWPfirepWqFJkH-25mU59AcbfvjFIYJ_dQsx2DKYBGK_hjxlQsFqi8Za0lloGgOlUlb9gcspqsXSIiRS0QzWQ13kB4IjHcVNe9PTUgh6gQCPhJeaKKRICB1YenhqlXKLCp1PadZf6LtwVWEVrVIljZ6tWTCbAQ5X3v1Er9d2GLoArpTBNwtZB5ax1uAGeC1cmMNBISjSs8MZ1icEr1W06SbNGtUs8Q7bzUAnb_E1TGRiYtv7pPeCXvAeIjDQPp8247yfOxoX_7FaeoJbYCziVq10AWX--0JG5YOTSUADw1CU6WJVjF4-PmyJ01iKh-HvM6JwCtzAskUsNVrzSsMOa-GIG05k5xqGuNMsMSfMD8p9yrEH2NZSjQE1b0zazwJ-luPyvUGLkfY3gcKx0eIvkDHO4-mCA3KGsx4YRi1Y_TzvbZRwg81mnt7VwcU_xKCeLzs9RcJ55XK9UuhQAGuIzBOQtVXxech_GK-9XWgxmOdCuiU2CX350y-VKiNrPZZDgu51H20V4yaYjtQ-Eoo4eNbHzNjhF_UukG6nm8D54Jn6JX1EcVf2qIEemMxr7HNPVUZixb7LIUWPA-AKL_pzA-wYYOZXa_zECaunfJDHMrzv4vBTNQqPh678gEqBT0BCmX6gdp8QzSQhsjbjbmi23GtW8Ap-hTGuSVE-6dETgD_1s6-pubwoSu66rT73k0exSgQhU-x-wk-0SvUTb1J7u-Me5rpc5iCCyG54cGaGDWFgRMGm8zrrta6zqmEwrxqNVGXMyh0RELR8uXsYwRJa00j9kt2K8I88CZAKB5gaM85isAc8BiM0Yg6lYfW3yPMaU032vt7kH-RsVDnZr9xSvpNs=","rs_0e577ca7e8f114c6016a7cd66d98448193968389ee79f8fed0",{"_893":867},[],{"_899":1976,"_881":1977,"_860":861,"_883":867},1786566254032,{"_884":1978,"_45":1972,"_909":1979,"_96":911},[],[],{"_881":1981,"_860":861,"_883":867},{"_944":1982,"_45":-5,"_888":1983,"_947":1984,"_96":1055},"call_BDZW0ra9gJQcwkItduTVcBoL",{"_893":867},{"_355":1985,"_951":-5},[1986,1987],{"_49":1989,"_96":955},{"_49":1988,"_96":955},"··············stdout | tests/property-chunking.test.ts\n[fast-check] replay seed: 424242\n\n·········································································check:function-grants: FAIL — 1 SECURITY DEFINER function(s) in /tmp/fn-grants-PeZ6T9/leaky.sql are executable by PUBLIC/anon:\n - public.leaky (schema.sql:2) — defined after the blanket revoke with no EXECUTE revoke FROM public\n\nFix: add `revoke execute on function public.() from public, anon, authenticated;` (and grant execute only to the intended role, e.g. service_role) in the migration that defines it, then reconcile schema.sql. If genuinely safe, allowlist it with a reason in scripts/check-function-grants.mjs.\n··························stderr | tests/assertion-tagging.test.ts > annotateChunkAssertions > fails open to an empty map when the runner throws\nAssertion tagging failed; continuing without assertion metadata: python exploded\n\n·····stderr | tests/assertion-tagging.test.ts > annotateChunkAssertions > fails open to an empty map on garbage output\nAssertion tagging failed; continuing without assertion metadata: Unexpected token 'T', \"Traceback \"... is not valid JSON\n\n···","Script completed\nWall time 17.8 seconds\nOutput:\n",{"_881":1991,"_860":861,"_883":867},{"_1063":1992,"_944":1982,"_45":1993,"_888":1994,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"65\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd658ab848193a9ac6430d9cb1df5",{"_893":867},{"_881":1996,"_860":861,"_883":867},{"_944":1997,"_45":-5,"_888":1998,"_204":-5,"_947":1999,"_96":949},"call_W9GY34U5EXZlkO4kVEX3apzs",{"_893":867},"Script running with cell ID 65\nWall time 10.1 seconds\nOutput:\n",{"_881":2001,"_860":861,"_883":867},{"_944":1997,"_45":2002,"_972":1768,"_888":2003,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd64c06f48193a38752742792c702",{"_893":867},{"_881":2005,"_860":861,"_883":867},{"_944":2006,"_45":-5,"_888":2007,"_947":2008,"_96":1055},"call_8pOT1xzwI4GFQASIaYZQyvZf",{"_893":867},{"_355":2009,"_951":-5},[2010,2011],{"_49":2013,"_96":955},{"_49":2012,"_96":955},"···································································································································································································································","Script completed\nWall time 17.1 seconds\nOutput:\n",{"_881":2015,"_860":861,"_883":867},{"_1063":2016,"_944":2006,"_45":2017,"_888":2018,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"64\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd636dce881939a54166025172ca2",{"_893":867},{"_881":2020,"_860":861,"_883":867},{"_944":2021,"_45":-5,"_888":2022,"_204":-5,"_947":2023,"_96":949},"call_JUX0yK6v2fxsFwPXBOIit1Ls",{"_893":867},"Script running with cell ID 64\nWall time 10.0 seconds\nOutput:\n",{"_881":2025,"_860":861,"_883":867},{"_944":2021,"_45":2026,"_972":1768,"_888":2027,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd629c0748193b7e9fbdd765c3f26",{"_893":867},{"_881":2029,"_860":861,"_883":867},{"_944":2030,"_45":-5,"_888":2031,"_947":2032,"_96":1055},"call_S1VaIlueRgNXiWJsvgVt4Ma0",{"_893":867},{"_355":2033,"_951":-5},[2034,2035],{"_49":2037,"_96":955},{"_49":2036,"_96":955},"·································································································································································································································stdout | tests/property-numeric-token-preservation.test.ts\n[fast-check] replay seed: 424242\n\n······························································","Script completed\nWall time 16.3 seconds\nOutput:\n",{"_881":2039,"_860":861,"_883":867},{"_1063":2040,"_944":2030,"_45":2041,"_888":2042,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"63\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd615d45c8193a4dbc5c141e1dcc2",{"_893":867},{"_881":2044,"_860":861,"_883":867},{"_944":2045,"_45":-5,"_888":2046,"_204":-5,"_947":2047,"_96":949},"call_Yn6BsJcgwu5ffhzQmjnNC08R",{"_893":867},"Script running with cell ID 63\nWall time 10.1 seconds\nOutput:\n",{"_881":2049,"_860":861,"_883":867},{"_944":2045,"_45":2050,"_972":1768,"_888":2051,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd6083bdc8193ad48df1c045b1b21",{"_893":867},{"_881":2053,"_860":861,"_883":867},{"_944":2054,"_45":-5,"_888":2055,"_947":2056,"_96":1055},"call_yLdchCNHZ1cCcnjOUVODCCsu",{"_893":867},{"_355":2057,"_951":-5},[2058,2059],{"_49":2061,"_96":955},{"_49":2060,"_96":955},"···················································································································································································································································································································","Script completed\nWall time 17.5 seconds\nOutput:\n",{"_881":2063,"_860":861,"_883":867},{"_1063":2064,"_944":2054,"_45":2065,"_888":2066,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"62\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd5f3cea48193826732fdbeb9feaa",{"_893":867},{"_881":2068,"_860":861,"_883":867},{"_944":2069,"_45":-5,"_888":2070,"_204":-5,"_947":2071,"_96":949},"call_K2HlfjFFrqFKNnWvgpyRBeWN",{"_893":867},"Script running with cell ID 62\nWall time 10.1 seconds\nOutput:\n",{"_881":2073,"_860":861,"_883":867},{"_944":2069,"_45":2074,"_972":1768,"_888":2075,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd5e6a86c81939859a6896b8d867a",{"_893":867},{"_881":2077,"_860":861,"_883":867},{"_944":2078,"_45":-5,"_888":2079,"_947":2080,"_96":1055},"call_FUJdSGE2kSykcCs7nDvMYxxo",{"_893":867},{"_355":2081,"_951":-5},[2082,2083],{"_49":1883,"_96":955},{"_49":2084,"_96":955},"stderr | tests/verify-phone-chrome.test.ts > runPhoneChromeStages > aborts on the first non-zero stage exit and never continues\n[phone-chrome] stage \"focused-browser\" failed; exiting with code 1\n\n··································································································································································stdout | tests/property-accessible-table.test.ts\n[fast-check] replay seed: 424242\n\n·····································································",{"_881":2086,"_860":861,"_883":867},{"_1063":2087,"_944":2078,"_45":2088,"_888":2089,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"61\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd5d36ed88193a4aa00ffd9355f28",{"_893":867},{"_881":2091,"_860":861,"_883":867},{"_944":2092,"_45":-5,"_888":2093,"_204":-5,"_947":2094,"_96":949},"call_IgU8IQ5AXPFTI0iEWe8wEMFP",{"_893":867},"Script running with cell ID 61\nWall time 10.1 seconds\nOutput:\n",{"_881":2096,"_860":861,"_883":867},{"_944":2092,"_45":2097,"_972":1768,"_888":2098,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd5c56b1c819399a70662c24c1b72",{"_893":867},{"_881":2100,"_860":861,"_883":867},{"_944":2101,"_45":-5,"_888":2102,"_947":2103,"_96":1055},"call_kp8iVV2WPM3JHmzJK3LqSHEE",{"_893":867},{"_355":2104,"_951":-5},[2105,2106],{"_49":1989,"_96":955},{"_49":2107,"_96":955},"··························································································································································································································",{"_881":2109,"_860":861,"_883":867},{"_1063":2110,"_944":2101,"_45":2111,"_888":2112,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"60\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd5af57a08193b4288299972abf6d",{"_893":867},{"_881":2114,"_860":861,"_883":867},{"_944":2115,"_45":-5,"_888":2116,"_204":-5,"_947":2117,"_96":949},"call_Ai6ddlhleaQ3105Nb6c1IVJh",{"_893":867},"Script running with cell ID 60\nWall time 10.0 seconds\nOutput:\n",{"_881":2119,"_860":861,"_883":867},{"_944":2115,"_45":2120,"_972":1768,"_888":2121,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd5a2a50c8193bd60b58c2e993c25",{"_893":867},{"_881":2123,"_860":861,"_883":867},{"_944":2124,"_45":-5,"_888":2125,"_947":2126,"_96":1055},"call_CQQc8Gol7GUz1f6foPzo7sJY",{"_893":867},{"_355":2127,"_951":-5},[2128,2129],{"_49":2131,"_96":955},{"_49":2130,"_96":955},"·······························································································································································································································································································································································································-···············································","Script completed\nWall time 16.7 seconds\nOutput:\n",{"_881":2133,"_860":861,"_883":867},{"_1063":2134,"_944":2124,"_45":2135,"_888":2136,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"59\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd58fabe4819390de570efe624aac",{"_893":867},{"_881":2138,"_860":861,"_883":867},{"_944":2139,"_45":-5,"_888":2140,"_204":-5,"_947":2141,"_96":949},"call_L0EBXkRUTDoABxQMGSWSJRQK",{"_893":867},"Script running with cell ID 59\nWall time 10.0 seconds\nOutput:\n",{"_881":2143,"_860":861,"_883":867},{"_944":2139,"_45":2144,"_972":2145,"_888":2146,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd582577c81938fa80bec385100bd","const r = await tools.write_stdin({session_id:70532,chars:\"\",yield_time_ms:30000,max_output_tokens:10000});\ntext(r.output);\n",{"_893":867},{"_881":2148,"_860":861,"_883":867},{"_944":2149,"_45":-5,"_888":2150,"_947":2151,"_96":1055},"call_CzGiHpx9E6lm25zmiAAit2yU",{"_893":867},{"_355":2152,"_951":-5},[2153,2154],{"_49":2156,"_96":955},{"_49":2155,"_96":955},"················································································································································································································································································································································································································································································································································································································","Script completed\nWall time 17.3 seconds\nOutput:\n",{"_881":2158,"_860":861,"_883":867},{"_1063":2159,"_944":2149,"_45":2160,"_888":2161,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"58\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd56ea12c8193bbaeca9918fecd00",{"_893":867},{"_881":2163,"_860":861,"_883":867},{"_944":2164,"_45":-5,"_888":2165,"_204":-5,"_947":2166,"_96":949},"call_WAuvIyXVW0ktLaElbQ5r906Y",{"_893":867},"Script running with cell ID 58\nWall time 10.1 seconds\nOutput:\n",{"_881":2168,"_860":861,"_883":867},{"_944":2164,"_45":2169,"_972":2145,"_888":2170,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd560efec81939144d728a806f45d",{"_893":867},{"_881":2172,"_860":861,"_883":867},{"_944":2173,"_45":-5,"_888":2174,"_947":2175,"_96":1055},"call_Hj7gt9zaQiBSbCj3RrkwERyI",{"_893":867},{"_355":2176,"_951":-5},[2177,2178],{"_49":2180,"_96":955},{"_49":2179,"_96":955},"···································································································································································································································································································stderr | tests/eval-utils.test.ts > RAG eval source identity matching > retries transient provider rate-limit errors for eval operations\n[eval] Provider rate limit during test-rate-limit; retrying attempt 2/2 in 1ms.\n\nstderr | tests/eval-utils.test.ts > RAG eval source identity matching > retries structured provider rate-limit errors that are not Error instances\n[eval] Provider rate limit during test-structured-rate-limit; retrying attempt 2/2 in 1ms.\n\nstderr | tests/eval-utils.test.ts > RAG eval source identity matching > keeps progress only from the successful provider attempt\n[eval] Provider rate limit during test-progress-rate-limit; retrying attempt 2/2 in 1ms.\n\n··············································································································································································································","Script completed\nWall time 17.7 seconds\nOutput:\n",{"_881":2182,"_860":861,"_883":867},{"_1063":2183,"_944":2173,"_45":2184,"_888":2185,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"57\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd54a00ac819388cb4c589fe0ae32",{"_893":867},{"_881":2187,"_860":861,"_883":867},{"_944":2188,"_45":-5,"_888":2189,"_204":-5,"_947":2190,"_96":949},"call_mBe1598Vot8Fj635CAlct6az",{"_893":867},"Script running with cell ID 57\nWall time 10.1 seconds\nOutput:\n",{"_881":2192,"_860":861,"_883":867},{"_944":2188,"_45":2193,"_972":2145,"_888":2194,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd53d3cb88193b4ff6233dfaed40f",{"_893":867},{"_881":2196,"_860":861,"_883":867},{"_944":2197,"_45":-5,"_888":2198,"_947":2199,"_96":1055},"call_4RxR3whdQ1BhwaoBdQAJ0PPp",{"_893":867},{"_355":2200,"_951":-5},[2201,2202],{"_49":2204,"_96":955},{"_49":2203,"_96":955},"···················································································································stderr | tests/test-runner-safety.test.ts > repository-wide heavyweight lock > allows an explicit force-lock-release to replace a live owner\n[AUDIT] Breaking forced heavyweight coordinator leases at /tmp/clinical-kb-force-lock-OXQm7G/clinical-kb-heavy-locks/65bf44488689a75993a7.lock (owners 76103)\n\n································································································································································································································································································································································································································································","Script completed\nWall time 17.2 seconds\nOutput:\n",{"_881":2206,"_860":861,"_883":867},{"_1063":2207,"_944":2197,"_45":2208,"_888":2209,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"56\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd52930808193b25477c6c356517c",{"_893":867},{"_881":2211,"_860":861,"_883":867},{"_944":2212,"_45":-5,"_888":2213,"_204":-5,"_947":2214,"_96":949},"call_H71lRhBtx1uwp4wlDWDiRjYx",{"_893":867},"Script running with cell ID 56\nWall time 10.2 seconds\nOutput:\n",{"_881":2216,"_860":861,"_883":867},{"_944":2212,"_45":2217,"_972":2145,"_888":2218,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd51bce408193a1637d0b795233bc",{"_893":867},{"_881":2220,"_860":861,"_883":867},{"_944":2221,"_45":-5,"_888":2222,"_947":2223,"_96":1055},"call_8OxkDKZYwUuhUbTKi2NXglBb",{"_893":867},{"_355":2224,"_951":-5},[2225,2226],{"_49":2228,"_96":955},{"_49":2227,"_96":955},"··························································································································································································································································································································································································································stderr | tests/private-access-routes.test.ts > private document API access > falls back to visible demo search only outside production when Supabase rejects the API key\n[clinical-kb] Supabase unavailable — serving DEMO data as a non-production fallback. Live search/answer paths are NOT being exercised. Check NEXT_PUBLIC_SUPABASE_URL / SUPABASE_SERVICE_ROLE_KEY if this is unexpected.\n\n·stderr | tests/private-access-routes.test.ts > private document API access > does not fall back to demo search in production when Supabase rejects the API key\n{\"level\":\"error\",\"message\":\"Search failed. Retry with a narrower question.\",\"timestamp\":\"2026-08-12T20:18:14.069Z\",\"status\":500,\"name\":\"PublicApiError\",\"details\":\"{\\\"code\\\":\\\"search_unknown_failure\\\",\\\"causeName\\\":\\\"Error\\\",\\\"causeMessage\\\":\\\"Unregistered API key\\\",\\\"sqlState\\\":null}\",\"stack\":\"at POST ([path])\",\"code\":\"search_unknown_failure\"}\n\n·stderr | tests/private-access-routes.test.ts > private document API access > logs failed search telemetry against the parsed query instead of an unknown placeholder\n{\"level\":\"error\",\"message\":\"Search failed. Retry with a narrower question.\",\"timestamp\":\"2026-08-12T20:18:14.422Z\",\"status\":500,\"name\":\"PublicApiError\",\"details\":\"{\\\"code\\\":\\\"search_unknown_failure\\\",\\\"causeName\\\":\\\"Error\\\",\\\"causeMessage\\\":\\\"Unregistered API key\\\",\\\"sqlState\\\":null}\",\"stack\":\"at POST ([path])\",\"code\":\"search_unknown_failure\"}\n\n·stderr | tests/private-access-routes.test.ts > private document API access > falls back to visible demo answers only outside production when Supabase rejects the API key\n[clinical-kb] Supabase unavailable — serving DEMO data as a non-production fallback. Live search/answer paths are NOT being exercised. Check NEXT_PUBLIC_SUPABASE_URL / SUPABASE_SERVICE_ROLE_KEY if this is unexpected.\n\n····stderr | tests/private-access-routes.test.ts > private document API access > falls back to a final streamed demo answer outside production when Supabase rejects the API key\n[clinical-kb] Supabase unavailable — serving DEMO data as a non-production fallback. Live search/answer paths are NOT being exercised. Check NEXT_PUBLIC_SUPABASE_URL / SUPABASE_SERVICE_ROLE_KEY if this is unexpected.\n\nstderr | tests/private-access-routes.test.ts > private document API access > does not stream demo fallback in production when Supabase rejects the API key\n{\"level\":\"error\",\"message\":\"Unregistered API key\",\"timestamp\":\"2026-08-12T20:18:15.326Z\",\"name\":\"Error\",\"stack\":\"at resolveSearchScope ([path])\"}\n\n···········································stderr | tests/rag-trust.test.ts > RAG trust validation > falls back safely (ungrounded, no citation back-fill) when model JSON is invalid (B5)\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: `Unexpected token 'o', \"not json\" is not valid JSON`,\n stack: 'at JSON.parse ()'\n}\n\n··stderr | tests/rag-trust.test.ts > RAG trust validation > runs the numeric gate on parse-failure prose and flags unverified doses (B5)\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: `Unexpected token 'G', \"Give 500 mg now.\" is not valid JSON`,\n stack: 'at JSON.parse ()'\n}\n\n······································································stderr | tests/rag-answer-fallback.test.ts > RAG structured-output fallback > retries malformed fast output and fails closed after strong generation also fails\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: 'Unterminated string in JSON at position 50 (line 1 column 51)',\n stack: 'at JSON.parse ()'\n}\n\nstderr | tests/rag-answer-fallback.test.ts > RAG structured-output fallback > retries malformed fast output and fails closed after strong generation also fails\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: 'Unterminated string in JSON at position 50 (line 1 column 51)',\n stack: 'at JSON.parse ()'\n}\n\nstderr | tests/rag-answer-fallback.test.ts > RAG structured-output fallback > retries malformed fast output and fails closed after strong generation also fails\nFailed to parse answer payload, falling back to safe text: {\n name: 'SyntaxError',\n message: 'Unterminated string in JSON at position 50 (line 1 column 51)',\n stack: 'at JSON.parse ()'\n}\n\n···························································································································","Script completed\nWall time 13.1 seconds\nOutput:\n",{"_881":2230,"_860":861,"_883":867},{"_1063":2231,"_944":2221,"_45":2232,"_888":2233,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"55\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd50701d881938ec81e493363f680",{"_893":867},{"_881":2235,"_860":861,"_883":867},{"_944":2236,"_45":-5,"_888":2237,"_204":-5,"_947":2238,"_96":949},"call_9zyQrEngu7WY1YHYWQt9qMPd",{"_893":867},"Script running with cell ID 55\nWall time 10.1 seconds\nOutput:\n",{"_881":2240,"_860":861,"_883":867},{"_944":2236,"_45":2241,"_972":2145,"_888":2242,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd4f96d788193901c0d81900a2457",{"_893":867},{"_881":2244,"_860":861,"_883":867},{"_944":2245,"_45":-5,"_888":2246,"_947":2247,"_96":1055},"call_vhYyGCKezdIpWeUPxYDxVuQj",{"_893":867},{"_355":2248,"_951":-5},[2249,2250],{"_49":1931,"_96":955},{"_49":2251,"_96":955},"stdout | tests/property-document-frame.dom.test.tsx\n[fast-check] replay seed: 424242\n\n··································································································································································································································································································",{"_881":2253,"_860":861,"_883":867},{"_1063":2254,"_944":2245,"_45":2255,"_888":2256,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"54\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd4e513a48193a0ca0d285832e5ee",{"_893":867},{"_881":2258,"_860":861,"_883":867},{"_944":2259,"_45":-5,"_888":2260,"_204":-5,"_947":2261,"_96":949},"call_Al3f8M5WLOiBLQO93oLPVZic",{"_893":867},"Script running with cell ID 54\nWall time 10.1 seconds\nOutput:\n",{"_881":2263,"_860":861,"_883":867},{"_944":2259,"_45":2264,"_972":2145,"_888":2265,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd4d81a108193a1305e4490eda9d0",{"_893":867},{"_881":2267,"_860":861,"_883":867},{"_944":2268,"_45":-5,"_888":2269,"_947":2270,"_96":1055},"call_S0SY6kcboXYI45t4YGPbF5ga",{"_893":867},{"_355":2271,"_951":-5},[2272,2273],{"_49":2204,"_96":955},{"_49":2274,"_96":955},"····························",{"_881":2276,"_860":861,"_883":867},{"_1063":2277,"_944":2268,"_45":2278,"_888":2279,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"53\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd4c27dfc8193a3aae8a362861be3",{"_893":867},{"_881":2281,"_860":861,"_883":867},{"_944":2282,"_45":-5,"_888":2283,"_204":-5,"_947":2284,"_96":949},"call_SqnjbjU2RVlZbgM7Q17lJkXF",{"_893":867},"Script running with cell ID 53\nWall time 10.1 seconds\nOutput:\n",{"_881":2286,"_860":861,"_883":867},{"_944":2282,"_45":2287,"_972":2145,"_888":2288,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd4b56cb88193903f6e53c100ac63",{"_893":867},{"_881":2290,"_860":861,"_883":867},{"_944":2291,"_45":-5,"_888":2292,"_947":2293,"_96":1055},"call_r24sKBgNpNNiOHZzPrEV7ku5",{"_893":867},{"_355":2294,"_951":-5},[2295,2296],{"_49":2180,"_96":955},{"_49":2297,"_96":955},"·······························································",{"_881":2299,"_860":861,"_883":867},{"_1063":2300,"_944":2291,"_45":2301,"_888":2302,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"52\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd4a0cae08193b459ef00418e6c06",{"_893":867},{"_881":2304,"_860":861,"_883":867},{"_944":2305,"_45":-5,"_888":2306,"_204":-5,"_947":2307,"_96":949},"call_JJnBuGxcseWdf1omExOYQGnP",{"_893":867},"Script running with cell ID 52\nWall time 10.1 seconds\nOutput:\n",{"_881":2309,"_860":861,"_883":867},{"_944":2305,"_45":2310,"_972":2145,"_888":2311,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd493f1ec8193a8021b95417e1acc",{"_893":867},{"_881":2313,"_860":861,"_883":867},{"_944":2314,"_45":-5,"_888":2315,"_947":2316,"_96":1055},"call_7Sm5DROVpCkMdnNxbCJvnN0W",{"_893":867},{"_355":2317,"_951":-5},[2318,2319],{"_49":2204,"_96":955},{"_49":2320,"_96":955},"············································································································",{"_881":2322,"_860":861,"_883":867},{"_1063":2323,"_944":2314,"_45":2324,"_888":2325,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"51\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd480817c81938635cdb2eab5dc95",{"_893":867},{"_881":2327,"_860":861,"_883":867},{"_944":2328,"_45":-5,"_888":2329,"_204":-5,"_947":2330,"_96":949},"call_xhr1qJKi29Zjs6aYZO4phiuK",{"_893":867},"Script running with cell ID 51\nWall time 10.1 seconds\nOutput:\n",{"_881":2332,"_860":861,"_883":867},{"_944":2328,"_45":2333,"_972":2145,"_888":2334,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd4734f18819398fb896bac2c0442",{"_893":867},{"_881":2336,"_860":861,"_883":867},{"_944":2337,"_45":-5,"_888":2338,"_947":2339,"_96":1055},"call_EL3NsoMMIYaqGDaGhlkYgOdM",{"_893":867},{"_355":2340,"_951":-5},[2341,2342],{"_49":2204,"_96":955},{"_49":2343,"_96":955},"··························································································································",{"_881":2345,"_860":861,"_883":867},{"_1063":2346,"_944":2337,"_45":2347,"_888":2348,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"50\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd45f00248193a413828a41367458",{"_893":867},{"_881":2350,"_860":861,"_883":867},{"_944":2351,"_45":-5,"_888":2352,"_204":-5,"_947":2353,"_96":949},"call_0yXhzj3nL1Cjave9q1Yjo6Zh",{"_893":867},"Script running with cell ID 50\nWall time 10.1 seconds\nOutput:\n",{"_881":2355,"_860":861,"_883":867},{"_944":2351,"_45":2356,"_972":2145,"_888":2357,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd45187188193bda44c5d99f3db0b",{"_893":867},{"_881":2359,"_860":861,"_883":867},{"_944":2360,"_45":-5,"_888":2361,"_947":2362,"_96":1055},"call_TsVZW0tg2aNyCL1b6lkmpfWj",{"_893":867},{"_355":2363,"_951":-5},[2364,2365],{"_49":2037,"_96":955},{"_49":2366,"_96":955},"································································································Not implemented: navigation to another Document\n··················································",{"_881":2368,"_860":861,"_883":867},{"_1063":2369,"_944":2360,"_45":2370,"_888":2371,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"49\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd43e4dd48193b3eefcd49fb245c0",{"_893":867},{"_881":2373,"_860":861,"_883":867},{"_944":2374,"_45":-5,"_888":2375,"_204":-5,"_947":2376,"_96":949},"call_jONhvdxwG6rfNTVTEqO1E1rW",{"_893":867},"Script running with cell ID 49\nWall time 10.1 seconds\nOutput:\n",{"_881":2378,"_860":861,"_883":867},{"_944":2374,"_45":2379,"_972":2145,"_888":2380,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd42fde24819396cb88294e2d3b1d",{"_893":867},{"_881":2382,"_860":861,"_883":867},{"_944":2383,"_45":-5,"_888":2384,"_947":2385,"_96":1055},"call_EGx5Bs37tn6WngbdllD3Y9WE",{"_893":867},{"_355":2386,"_951":-5},[2387,2388],{"_49":2390,"_96":955},{"_49":2389,"_96":955},"··················································stderr | tests/signed-image.dom.test.tsx > SignedImage failure/retry (jsdom) > opens the fullscreen lightbox when a loaded zoomable image is activated, and closes on Escape\nImage with src \"http://localhost:3000/demo/airway.png\" has \"fill\" and parent element with invalid \"position\". Provided \"static\" should be one of absolute,fixed,relative.\nImage with src \"http://localhost:3000/demo/airway.png\" has \"fill\" and a height value of 0. This is likely because the parent element of the image has not been styled to have a set height.\n\n·········stderr | tests/signed-image.dom.test.tsx > SignedImage expand affordance (jsdom) > keeps the expand chip visible on pointers that cannot hover\nImage with src \"http://localhost:3000/demo/wide-table.png\" has \"fill\" and parent element with invalid \"position\". Provided \"static\" should be one of absolute,fixed,relative.\nImage with src \"http://localhost:3000/demo/wide-table.png\" has \"fill\" and a height value of 0. This is likely because the parent element of the image has not been styled to have a set height.\n\n···································································","Script completed\nWall time 11.8 seconds\nOutput:\n",{"_881":2392,"_860":861,"_883":867},{"_1063":2393,"_944":2383,"_45":2394,"_888":2395,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"48\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd420d7ac8193adb36538d006a927",{"_893":867},{"_881":2397,"_860":861,"_883":867},{"_944":2398,"_45":-5,"_888":2399,"_204":-5,"_947":2400,"_96":949},"call_VWKN37frQGjwJe9UuXI4o5uB",{"_893":867},"Script running with cell ID 48\nWall time 10.1 seconds\nOutput:\n",{"_881":2402,"_860":861,"_883":867},{"_944":2398,"_45":2403,"_972":2145,"_888":2404,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd40f3cb48193bdb49e198981f6ec",{"_893":867},{"_881":2406,"_860":861,"_883":867},{"_944":2407,"_45":-5,"_888":2408,"_947":2409,"_96":1055},"call_BjIDZGKzpj4HN7YuV67Qqdjy",{"_893":867},{"_355":2410,"_951":-5},[2411,2412],{"_49":2156,"_96":955},{"_49":2413,"_96":955},"································································································································································",{"_881":2415,"_860":861,"_883":867},{"_1063":2416,"_944":2407,"_45":2417,"_888":2418,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"47\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd3fb1fd88193927660a99b6b42d3",{"_893":867},{"_881":2420,"_860":861,"_883":867},{"_944":2421,"_45":-5,"_888":2422,"_204":-5,"_947":2423,"_96":949},"call_L53BHU73J8Yxvx1XsiAxwrzM",{"_893":867},"Script running with cell ID 47\nWall time 10.1 seconds\nOutput:\n",{"_881":2425,"_860":861,"_883":867},{"_944":2421,"_45":2426,"_972":2145,"_888":2427,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd3edb6b48193b817fd4e544d9e03",{"_893":867},{"_881":2429,"_860":861,"_883":867},{"_944":2430,"_45":-5,"_888":2431,"_947":2432,"_96":1055},"call_CWoySjuDtagemt2KFJDcqPYu",{"_893":867},{"_355":2433,"_951":-5},[2434,2435],{"_49":1339,"_96":955},{"_49":2436,"_96":955},"\n> npm run test\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 test\n> node scripts/run-vitest.mjs run --reporter=dot\n\n\n RUN v4.1.10 /workspace/Database\n\n···································································································································································",{"_881":2438,"_860":861,"_883":867},{"_1063":2439,"_944":2430,"_45":2440,"_888":2441,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"46\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd3d8d7dc81938c5757e4f52edc59",{"_893":867},{"_881":2443,"_860":861,"_883":867},{"_944":2444,"_45":-5,"_888":2445,"_204":-5,"_947":2446,"_96":949},"call_6p9XQjTVt3irw4XGx68iBQUJ",{"_893":867},"Script running with cell ID 46\nWall time 10.0 seconds\nOutput:\n",{"_881":2448,"_860":861,"_883":867},{"_944":2444,"_45":2449,"_972":2145,"_888":2450,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd3cc5bac819387a786ac39be1cab",{"_893":867},{"_881":2452,"_860":861,"_883":867},{"_944":2453,"_45":-5,"_888":2454,"_947":2455,"_96":1055},"call_qg35u5es97AEASIrMMZEW3ff",{"_893":867},{"_355":2456,"_951":-5},[2457,2458],{"_49":1907,"_96":955},{"_49":341,"_96":955},{"_881":2460,"_860":861,"_883":867},{"_1063":2461,"_944":2453,"_45":2462,"_888":2463,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"45\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd3b908b48193bb2ce4a070ca4cbf",{"_893":867},{"_881":2465,"_860":861,"_883":867},{"_944":2466,"_45":-5,"_888":2467,"_204":-5,"_947":2468,"_96":949},"call_gR7R7aXzIHbJjXBP4oNbzIPA",{"_893":867},"Script running with cell ID 45\nWall time 10.0 seconds\nOutput:\n",{"_881":2470,"_860":861,"_883":867},{"_944":2466,"_45":2471,"_972":2145,"_888":2472,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd3aa8f2081939a62cdd17eeb9afc",{"_893":867},{"_881":2474,"_860":861,"_883":867},{"_944":2475,"_45":-5,"_888":2476,"_947":2477,"_96":1055},"call_asyaZDP3p1qzkzk2zvbbQP8H",{"_893":867},{"_355":2478,"_951":-5},[2479,2480],{"_49":2482,"_96":955},{"_49":2481,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 typecheck:internal\n> node ./node_modules/typescript/bin/tsc -p tsconfig.typecheck.json --noEmit --tsBuildInfoFile /tmp/clinical-kb-tsc-cache/3fd60c93aeae7e0c6623/tsconfig.tsbuildinfo\n\n","Script completed\nWall time 16.8 seconds\nOutput:\n",{"_881":2484,"_860":861,"_883":867},{"_1063":2485,"_944":2475,"_45":2486,"_888":2487,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"44\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd39220088193ae9aed50bfa2b1d5",{"_893":867},{"_881":2489,"_860":861,"_883":867},{"_944":2490,"_45":-5,"_888":2491,"_204":-5,"_947":2492,"_96":949},"call_Mbb5caacTDYZqBRrMvGJ0gdE",{"_893":867},"Script running with cell ID 44\nWall time 10.0 seconds\nOutput:\n",{"_881":2494,"_860":861,"_883":867},{"_944":2490,"_45":2495,"_972":2145,"_888":2496,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd384c8508193bcebf5cfe15bc594",{"_893":867},{"_881":2498,"_860":861,"_883":867},{"_944":2499,"_45":-5,"_888":2500,"_947":2501,"_96":1055},"call_AM2YgoCsF8r2Uf9p244aIban",{"_893":867},{"_355":2502,"_951":-5},[2503,2504],{"_49":2506,"_96":955},{"_49":2505,"_96":955},"Outstanding-issues guard passed: 307 rows (112 open, 195 archived), unique ids, next-id=310 above the highest, no merge driver, no ids deleted from base 8af658690773.\n\n> npm run lint\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 lint\n> node scripts/run-heavy.mjs --npm-script lint:internal\n\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 lint:internal\n> node --max-old-space-size=8192 ./node_modules/eslint/bin/eslint.js src tests scripts worker supabase playwright eslint.config.mjs next.config.ts playwright.config.ts playwright.visual.config.ts vitest.config.mts --max-warnings 0 --no-error-on-unmatched-pattern --cache --cache-location node_modules/.cache/eslint/\n\n\n> npm run typecheck\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 typecheck\n> node scripts/run-heavy.mjs --npm-script typecheck:internal\n\n","Script completed\nWall time 16.4 seconds\nOutput:\n",{"_881":2508,"_860":861,"_883":867},{"_1063":2509,"_944":2499,"_45":2510,"_888":2511,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"43\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd370ef4c8193b42cf77556c9e04a",{"_893":867},{"_881":2513,"_860":861,"_883":867},{"_944":2514,"_45":-5,"_888":2515,"_204":-5,"_947":2516,"_96":949},"call_KwXlZ6HeTkMu8sVa2iAwdM0T",{"_893":867},"Script running with cell ID 43\nWall time 10.0 seconds\nOutput:\n",{"_881":2518,"_860":861,"_883":867},{"_944":2514,"_45":2519,"_972":2145,"_888":2520,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd363b9b48193b75e2508451b63ca",{"_893":867},{"_881":2522,"_860":861,"_883":867},{"_944":2523,"_45":-5,"_888":2524,"_947":2525,"_96":1055},"call_MhstvSj8GxQmE2qM8vnAyb9i",{"_893":867},{"_355":2526,"_951":-5},[2527,2528],{"_49":2180,"_96":955},{"_49":2529,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:branch-review-ledger\n> node scripts/check-branch-review-ledger.mjs --self-test && node scripts/branch-review-ledger.mjs --self-test && node scripts/merge-branch-review-ledger.mjs --self-test && node scripts/check-branch-review-ledger.mjs\n\nbranch-review-ledger self-test passed.\nbranch-review-ledger self-test passed.\nmerge-branch-review-ledger self-test passed.\nBranch review ledger guard passed: 867 live table records + 1206 archived (867 under the 2026-07-29 machine-readable contract), ledger merge active, six cells each, no conflict markers, mojibake, heading records, or duplicates.\n\n> npm run check:outstanding-issues\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:outstanding-issues\n> node scripts/check-outstanding-issues.mjs --self-test && node scripts/outstanding-issues.mjs --self-test && node scripts/check-outstanding-issues.mjs\n\noutstanding-issues self-test passed.\noutstanding-issues writer self-test passed.\n",{"_881":2531,"_860":861,"_883":867},{"_1063":2532,"_944":2523,"_45":2533,"_888":2534,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"42\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd34f2dd881939eb30fee7a5c21ec",{"_893":867},{"_881":2536,"_860":861,"_883":867},{"_944":2537,"_45":-5,"_888":2538,"_204":-5,"_947":2539,"_96":949},"call_HhXKxpXcV19JL4G67Yqr3miF",{"_893":867},"Script running with cell ID 42\nWall time 10.0 seconds\nOutput:\n",{"_881":2541,"_860":861,"_883":867},{"_944":2537,"_45":2542,"_972":2145,"_888":2543,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd341bfbc819391b9fa461f2c24d3",{"_893":867},{"_881":2545,"_860":861,"_883":867},{"_944":2546,"_45":-5,"_888":2547,"_947":2548,"_96":1055},"call_Iwi3Mq18J0px91RpB3rwL0ao",{"_893":867},{"_355":2549,"_951":-5},[2550,2551],{"_49":2553,"_96":955},{"_49":2552,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-inventory\n> node scripts/update-docs-inventory.mjs --check\n\nDocs inventory current: 228 script files, 239 npm scripts.\n\n> npm run docs:check-scripts\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-scripts\n> node scripts/check-docs-script-refs.mjs\n\ndocs script-ref check passed: 444 npm-run reference(s) resolve to real scripts.\n\n> npm run docs:check-links\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-links\n> node scripts/check-docs-links.mjs\n\ndocs link check passed: 1659 repo path references resolve.\n\n> npm run check:branch-review-ledger\n","Script completed\nWall time 13.7 seconds\nOutput:\n",{"_881":2555,"_860":861,"_883":867},{"_1063":2556,"_944":2546,"_45":2557,"_888":2558,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"41\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd32ccb688193aee379ad3f2e5d0e",{"_893":867},{"_881":2560,"_860":861,"_883":867},{"_944":2561,"_45":-5,"_888":2562,"_204":-5,"_947":2563,"_96":949},"call_ndpMkYpXQyKsgpzeTcmmSrbU",{"_893":867},"Script running with cell ID 41\nWall time 10.0 seconds\nOutput:\n",{"_881":2565,"_860":861,"_883":867},{"_944":2561,"_45":2566,"_972":2145,"_888":2567,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd31d7054819391d8d8cd7c2d75b4",{"_893":867},{"_881":2569,"_860":861,"_883":867},{"_944":2570,"_45":-5,"_888":2571,"_947":2572,"_96":1055},"call_1fwCghcI8EyeicqzeF1fWIYU",{"_893":867},{"_355":2573,"_951":-5},[2574,2575],{"_49":1931,"_96":955},{"_49":2576,"_96":955},"\nup to date in 2s\n\n205 packages are looking for funding\n run `npm fund` for details\n\n> npm run sitemap:check\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 sitemap:check\n> node scripts/run-tsx.mjs scripts/generate-site-map.ts --check\n\n\n> npm run docs:check-index\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-index\n> node scripts/check-codebase-index-coverage.mjs\n\ndocs/codebase-index.md coverage OK: all 50 repository roots/modules/routes and all schema tables are indexed.\n\n> npm run docs:check-inventory\n",{"_881":2578,"_860":861,"_883":867},{"_1063":2579,"_944":2570,"_45":2580,"_888":2581,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"40\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd3096754819393ea8df02046ee2d",{"_893":867},{"_881":2583,"_860":861,"_883":867},{"_944":2584,"_45":-5,"_888":2585,"_204":-5,"_947":2586,"_96":949},"call_Z8ra2YrMqMCqQnrNe1rtmfjw",{"_893":867},"Script running with cell ID 40\nWall time 10.0 seconds\nOutput:\n",{"_881":2588,"_860":861,"_883":867},{"_944":2584,"_45":2589,"_972":2145,"_888":2590,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd2fcf4cc819393060b706017167b",{"_893":867},{"_881":2592,"_860":861,"_883":867},{"_944":2593,"_45":-5,"_888":2594,"_947":2595,"_96":1055},"call_1A9njaJ9xWQkjQdf39uyPBhL",{"_893":867},{"_355":2596,"_951":-5},[2597,2598],{"_49":1931,"_96":955},{"_49":2599,"_96":955},"[Runtime Check] PASS: Node runtime 24.19.0 matches required Node 24.x.\n[Runtime Check] PASS: npm runtime 11.17.0 matches required npm 11.x.\n\n> npm run check:installed-lock-parity\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:installed-lock-parity\n> node scripts/check-installed-lock-parity.mjs\n\n[installed-lock-parity] next: 16.3.0\n[installed-lock-parity] react: 19.2.8\n[installed-lock-parity] react-dom: 19.2.8\n[installed-lock-parity] eslint: 9.39.5\n[installed-lock-parity] playwright: 1.62.1\n[installed-lock-parity] typescript: 6.0.3\n[installed-lock-parity] vitest: 4.1.10\n[installed-lock-parity] full tree: 760 package locations; 51566 files.\n\n> npm run format:changed\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 format:changed\n> node scripts/check-format-changed.mjs\n\nChecking formatting...\nAll matched files use Prettier code style!\n\n> npm run check:npm-ci-dry-run\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:npm-ci-dry-run\n> npm ci --dry-run --ignore-scripts\n\n",{"_881":2601,"_860":861,"_883":867},{"_1063":2602,"_944":2593,"_45":2603,"_888":2604,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"39\",\"yield_time_ms\":30000,\"max_tokens\":10000}","fc_0e577ca7e8f114c6016a7cd2e9109881939ae4b0e27ec62543",{"_893":867},{"_881":2606,"_860":861,"_883":867},{"_944":2607,"_45":-5,"_888":2608,"_204":-5,"_947":2609,"_96":949},"call_yJomzNojkv1o1rT0Xl7l8ou8",{"_893":867},"Script running with cell ID 39\nWall time 10.0 seconds\nOutput:\n",{"_881":2611,"_860":861,"_883":867},{"_944":2607,"_45":2612,"_972":2145,"_888":2613,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd2db19d88193a492fd8d39953393",{"_893":867},{"_881":2615,"_860":861,"_883":867},{"_884":-5,"_905":2616,"_45":2617,"_888":2618,"_909":2619,"_96":911},"gAAAAABqfNLblvUXr-TWZMAX_skcoqP6_w7UA_8Fcl9DeJqa-tUTboc1yCNRR8CqVFkgekww2LkIJnolMrzAZij5CehkXJ-y6CVngm_Sn3-1MfRJEPawVv38B5lsxMg4-05muSeHy295vhDXDiGJfuU8KVcgA1WLrYPew76034X4wxewkEd1UBW6LDwFSeHYmqL4hDWC4C0O8sWX2Yx0HR5pF0vwMEm1AyV4POhOVOHI8PdZ-eWGfXe6k5SX78RQs8rYRRcgJcqTsYRAjUuIJJS_-Qx-0mNtBLhUMmxmwDjfMdjM_Huqna8EfXyEODx9wWD1Kf9aJY1xUgq33ZKP0cPLu8rZD9SfWxBCHARQmoW-2Efx0d_Fv_ztzIiVNmQKEyIq5AKC_9zuY0O3C0PXSc3w9qkkgV7tlKO01ytZWrKorXboBAyr8dxrNQgOZ-WQUQ_sRt8_y3wKfdEn4NHV8sLdMoYeO7ErgT9DDSI22yZB7RYBlk_N9yLCXn67Pm6B9s6Qy7v2j04AsxYI6B2rs8RcUBFiM6eZHPrJ0RH3GfBTk4tWuvxd8VTohcZLnC1kOj7RIP1s6CMeJjitRKyCRRoQqP4kWH-mgNEVoKINumC2xZVZungemhUHRp-XJI5V2RTAWgQ2Ss2njIn3UIYGF3tl3q6qQZ8EDVyFxoRX-Spn7GjUcvbnNTnc72DFUxPN7fR_m6JjM2EyBmzdtAN-JuJkpeyz6xTjmfSySzYmZCt5MtzPx89P-FS6b_L0BcnWxJMFVaATfj1o6MOiQqmTbxVpTLBnohmhmCEe4FtbCgP9bUTG7Xi3GR9I4-znra3vuQSPpQIhUEMeRicKugzw3iTK5-dcpt3ug_mErPg3RLYsZdmQvoPFkn3_GNQ-LpvQlVC06pdjToZ9PaIpGDQI1LEETyVC5JfcqmcKhJG7D6C4n1LzRigw024=","rs_0e577ca7e8f114c6016a7cd2da530881938fdfbf3477a8de66",{"_893":867},[],{"_899":2621,"_881":2622,"_860":861,"_883":867},1786565339190,{"_884":2623,"_45":2617,"_909":2624,"_96":911},[],[],{"_881":2626,"_860":861,"_883":867},{"_944":2627,"_45":-5,"_888":2628,"_947":2629,"_96":1055},"call_aXg4FJyTXElv03pIf2ckNSgH",{"_893":867},{"_355":2630,"_951":-5},[2631,2632],{"_49":2061,"_96":955},{"_49":2633,"_96":955},"tests/document-filter-panel.dom.test.tsx 82ms (unchanged)\ntests/document-flow-routes.test.ts 9ms (unchanged)\ntests/document-frame-contract.test.ts 13ms (unchanged)\ntests/document-frame.dom.test.tsx 25ms (unchanged)\ntests/document-image-filmstrip.dom.test.tsx 10ms (unchanged)\ntests/document-image-phone-layout-contract.test.ts 7ms (unchanged)\ntests/document-index-units.test.ts 17ms (unchanged)\ntests/document-label-coverage.test.ts 6ms (unchanged)\ntests/document-label-governance.test.ts 5ms (unchanged)\ntests/document-metadata-merge.test.ts 7ms (unchanged)\ntests/document-mutation-routes.test.ts 36ms (unchanged)\ntests/document-naming.test.ts 5ms (unchanged)\ntests/document-organization.test.ts 22ms (unchanged)\ntests/document-rail-image-window.dom.test.tsx 12ms (unchanged)\ntests/document-relevance-score.test.ts 3ms (unchanged)\ntests/document-search-record-fault.dom.test.tsx 16ms (unchanged)\ntests/document-search-scope-zero-results.dom.test.tsx 15ms (unchanged)\ntests/document-search-unavailable-status.test.ts 4ms 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(unchanged)\ntests/shared-home-empty-state.dom.test.tsx 9ms (unchanged)\ntests/shared-search-shell-url-sync.test.ts 6ms (unchanged)\ntests/sheet-focus-stress.dom.test.tsx 28ms (unchanged)\ntests/sheet-focus.dom.test.tsx 25ms (unchanged)\ntests/sheet.dom.test.tsx 21ms (unchanged)\ntests/sidebar-collapsed.test.ts 3ms (unchanged)\ntests/signed-image.dom.test.tsx 20ms (unchanged)\ntests/signed-image.test.ts 5ms (unchanged)\ntests/signed-url-cache.test.ts 5ms (unchanged)\ntests/site-map.test.ts 9ms (unchanged)\ntests/smart-rag-api.test.ts 14ms (unchanged)\ntests/source-authority-tooling.test.ts 25ms (unchanged)\ntests/source-backed-recovery-cross-reference.test.ts 8ms (unchanged)\ntests/source-badges-off-vocab.dom.test.tsx 5ms (unchanged)\ntests/source-governance.test.ts 13ms (unchanged)\ntests/source-metadata-browser-safety.test.ts 6ms (unchanged)\ntests/source-metadata.test.ts 14ms (unchanged)\ntests/source-preview-popover.dom.test.tsx 13ms (unchanged)\ntests/source-review-policy.test.ts 12ms (unchanged)\ntests/source-review-route.test.ts 29ms (unchanged)\ntests/source-review-schema.test.ts 8ms (unchanged)\ntests/source-text-sanitizer.test.ts 25ms (unchanged)\ntests/specifiers-content.test.ts 16ms (unchanged)\ntests/specifiers.test.ts 7ms (unchanged)\ntests/spend-metrics.test.ts 11ms (unchanged)\ntests/sse-heartbeat.test.ts 4ms (unchanged)\ntests/storage-cleanup-safety.test.ts 4ms (unchanged)\ntests/storage-upload-compensation.test.ts 3ms (unchanged)\ntests/stranded-queued-recovery.test.ts 15ms (unchanged)\ntests/stubs/server-only.ts 1ms (unchanged)\ntests/style-contract-registry.test.ts 10ms (unchanged)\ntests/summarise-web-vitals.test.ts 45ms (unchanged)\ntests/summarize-agent-conversation.test.ts 7ms (unchanged)\ntests/supabase-errors.test.ts 3ms (unchanged)\ntests/supabase-health.test.ts 5ms (unchanged)\ntests/supabase-project.test.ts 7ms (unchanged)\ntests/supabase-schema.test.ts 318ms (unchanged)\ntests/supabase-server.test.ts 13ms (unchanged)\ntests/sync-open-pr-branches.test.ts 6ms (unchanged)\ntests/table-fact-ranking.test.ts 3ms (unchanged)\ntests/table-facts.test.ts 5ms (unchanged)\ntests/table-review.test.ts 3ms (unchanged)\ntests/tailwind-merge-config.test.ts 16ms (unchanged)\ntests/test-runner-safety.test.ts 64ms (unchanged)\ntests/theme.test.ts 8ms (unchanged)\ntests/therapy-card-preview.test.ts 4ms (unchanged)\ntests/therapy-compass-artifact-href-fallback.dom.test.tsx 5ms (unchanged)\ntests/therapy-compass-artifact-navigation.dom.test.tsx 10ms (unchanged)\ntests/therapy-compass-clipboard.dom.test.tsx 9ms (unchanged)\ntests/therapy-compass-data-recovery.dom.test.tsx 21ms (unchanged)\ntests/therapy-compass-mode-wiring.test.ts 19ms (unchanged)\ntests/therapy-compass-pathways.test.ts 12ms (unchanged)\ntests/therapy-compass-provider-seed.dom.test.tsx 6ms (unchanged)\ntests/therapy-compass-responsive-contract.test.ts 21ms (unchanged)\ntests/therapy-compass-ui.dom.test.tsx 4ms (unchanged)\ntests/therapy-filter-sheet.dom.test.tsx 5ms (unchanged)\ntests/tools-catalog.test.ts 6ms (unchanged)\ntests/tsx-server-only-runner.test.ts 6ms (unchanged)\ntests/ui-accessibility.spec.ts 80ms (unchanged)\ntests/ui-chrome-scroll.spec.ts 20ms (unchanged)\ntests/ui-document-canvas.spec.ts 16ms (unchanged)\ntests/ui-document-top-navigation-mockup.spec.ts 7ms (unchanged)\ntests/ui-forms-section-nav.spec.ts 7ms (unchanged)\ntests/ui-formulation.spec.ts 30ms (unchanged)\ntests/ui-hydration.spec.ts 6ms (unchanged)\ntests/ui-mode-nav-density.spec.ts 25ms (unchanged)\ntests/ui-overlap.spec.ts 29ms (unchanged)\ntests/ui-overlay-css-contract.test.ts 17ms (unchanged)\ntests/ui-phone-scroll-document-rail.spec.ts 11ms (unchanged)\ntests/ui-phone-scroll-page-owned.spec.ts 138ms (unchanged)\ntests/ui-phone-scroll-routes.spec.ts 12ms (unchanged)\ntests/ui-phone-scroll.spec.ts 43ms (unchanged)\ntests/ui-primitives.dom.test.tsx 9ms (unchanged)\ntests/ui-pwa.spec.ts 24ms (unchanged)\ntests/ui-route-coverage.spec.ts 65ms (unchanged)\ntests/ui-smoke.spec.ts 2720ms (unchanged)\ntests/ui-specifiers.spec.ts 25ms (unchanged)\ntests/ui-stress.spec.ts 41ms (unchanged)\ntests/ui-style-contract.spec.ts 16ms (unchanged)\ntests/ui-therapy-nav-scroll.spec.ts 10ms (unchanged)\ntests/ui-therapy-navigation-mockup.spec.ts 4ms (unchanged)\ntests/ui-tools-collapse.spec.ts 6ms (unchanged)\ntests/ui-tools-task-directory.spec.ts 8ms (unchanged)\ntests/ui-tools.spec.ts 950ms (unchanged)\ntests/ui-universal-search.spec.ts 37ms (unchanged)\ntests/ui-v2-announcements.dom.test.tsx 16ms (unchanged)\ntests/ui-v2-answer-safety.dom.test.tsx 62ms (unchanged)\ntests/ui-v2-components.dom.test.tsx 106ms (unchanged)\ntests/ui-v2-form-field.dom.test.tsx 11ms (unchanged)\ntests/ui-visual-artifacts.spec.ts 3ms (unchanged)\ntests/ui-visual-baseline.spec.ts 14ms (unchanged)\ntests/universal-search-owner.live.test.ts 7ms (unchanged)\ntests/universal-search-stream.test.ts 6ms (unchanged)\ntests/universal-search.test.ts 65ms (unchanged)\ntests/unknown-status-derivation.test.ts 7ms (unchanged)\ntests/upload-admission.test.ts 4ms (unchanged)\ntests/upload-duplicate-cleanup-ledger.test.ts 2ms (unchanged)\ntests/upload-ingress-limits.test.ts 2ms (unchanged)\ntests/upload-outcome.test.ts 4ms (unchanged)\ntests/upload-size-contract.test.ts 2ms (unchanged)\ntests/upload-size-precheck.dom.test.tsx 11ms (unchanged)\ntests/upload-structure.test.ts 13ms (unchanged)\ntests/use-answer-thread-bootstrap.test.ts 4ms (unchanged)\ntests/use-deferred-registry-search.dom.test.tsx 5ms (unchanged)\ntests/use-differential-search.dom.test.tsx 38ms (unchanged)\ntests/use-event-callback.dom.test.tsx 4ms (unchanged)\ntests/use-hide-on-scroll.dom.test.tsx 6ms (unchanged)\ntests/use-hide-on-scroll.test.ts 40ms (unchanged)\ntests/use-universal-search-stream.dom.test.tsx 13ms (unchanged)\ntests/use-viewer-gestures.dom.test.tsx 24ms (unchanged)\ntests/verify-phone-chrome.test.ts 14ms (unchanged)\ntests/verify-pr-local.test.ts 8ms (unchanged)\ntests/viewer-zoom.test.ts 3ms (unchanged)\ntests/visual-evidence-tabs.dom.test.tsx 17ms (unchanged)\ntests/visual-intelligence.test.ts 10ms (unchanged)\ntests/ward-output.test.ts 39ms (unchanged)\ntests/webhooks-chat-notify.test.ts 6ms (unchanged)\ntests/webhooks-railway-route.test.ts 7ms (unchanged)\ntests/webhooks-secret-auth.test.ts 6ms (unchanged)\ntests/webhooks-supabase-document-change-route.test.ts 13ms (unchanged)\ntests/worker-behavior.test.ts 4ms (unchanged)\ntests/worker-bundle.test.ts 6ms (unchanged)\ntests/worker-observability.test.ts 5ms (unchanged)\ntests/worker-python-lock.test.ts 3ms (unchanged)\ntests/worker-run-loop.test.ts 10ms (unchanged)\ntests/worker-runtime-control.test.ts 4ms (unchanged)\ntests/worker-runtime-validation.test.ts 3ms (unchanged)\ntests/worker-safe-logging.test.ts 4ms (unchanged)\ntests/worker-visual-capture.test.ts 7ms (unchanged)\ntests/xlsx-extraction-budget.test.ts 5ms (unchanged)\ntests/yaml-contract.test.ts 2ms (unchanged)\ntsconfig.json 5ms (unchanged)\ntsconfig.typecheck.json 1ms (unchanged)\nvitest.config.mts 6ms (unchanged)\nworker/assertion-tagging.ts 13ms (unchanged)\nworker/behavior.ts 4ms (unchanged)\nworker/embedding-fields.ts 15ms (unchanged)\nworker/index.ts 3ms (unchanged)\nworker/main.ts 266ms (unchanged)\nworker/observability.ts 6ms (unchanged)\nworker/prerequisites.ts 8ms (unchanged)\nworker/python/fixtures/README.md 12ms (unchanged)\nworker/run-loop.ts 7ms (unchanged)\nworker/runtime-control.ts 14ms (unchanged)\nworker/table-facts.ts 34ms (unchanged)\nworker/types.ts 3ms (unchanged)\nworker/validate-runtime.ts 21ms (unchanged)\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 verify:pr-local\n> node scripts/verify-pr-local.mjs\n\nChanged files: data/medication-interaction-index.json, docs/branch-review-ledger.md, docs/codebase-index.md, docs/design-system/COMPONENTS.md, docs/design-system/adoption-manifest.json, docs/samd-classification-medication-considerations.md, docs/scripts-index.md, docs/search-chrome-behaviour.md, package.json, scripts/build-medication-interaction-index.ts, src/app/globals.css, src/components/ClinicalDashboard.tsx, src/components/clinical-dashboard/global-search-shell.tsx, src/components/clinical-dashboard/master-search-header.tsx, src/components/clinical-dashboard/medication-considerations.tsx, src/components/clinical-dashboard/medication-nav-header.tsx, src/components/clinical-dashboard/medication-prescribing-workspace.tsx, src/components/clinical-dashboard/medication-record-page.tsx, src/components/clinical-dashboard/mobile-composer-reserve.ts, src/components/clinical-dashboard/patient-details-dock-action.tsx, src/components/clinical-dashboard/patient-profile-context.tsx, src/components/clinical-dashboard/patient-profile-panel.tsx, src/lib/medication-interaction-lexicon.ts, src/lib/medication-interactions.ts, src/lib/medication-patient-alerts.ts, src/lib/mode-home-composer.ts, src/lib/patient-profile-storage.ts, tests/helpers/style-contracts.ts, tests/in-page-nav-route-sections.dom.test.tsx, tests/medication-interaction-lexicon-coverage.test.ts, tests/medication-interaction-surfaces.dom.test.tsx, tests/medication-interactions.test.ts, tests/medication-record-page.dom.test.tsx, tests/patient-details-dock-action.dom.test.tsx, tests/patient-profile-medications.dom.test.tsx, tests/phone-dock-addon-contract.test.ts\n\n> npm run check:runtime\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:runtime\n> node scripts/run-tsx.mjs scripts/check-runtime.ts\n\n",{"_881":2635,"_860":861,"_883":867},{"_1063":2636,"_944":2627,"_45":2637,"_888":2638,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"38\",\"yield_time_ms\":30000,\"max_tokens\":15000}","fc_0e577ca7e8f114c6016a7cd2c21f3081939ca741a1d6d03be1",{"_893":867},{"_881":2640,"_860":861,"_883":867},{"_944":2641,"_45":-5,"_888":2642,"_204":-5,"_947":2643,"_96":949},"call_EGAM8LR2mnAUdEMuYQN00cme",{"_893":867},"Script running with cell ID 38\nWall time 10.0 seconds\nOutput:\n",{"_881":2645,"_860":861,"_883":867},{"_944":2641,"_45":2646,"_972":2647,"_888":2648,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd2b5763c8193983b62b4c0c9298a","const r = await tools.write_stdin({session_id:70532,chars:\"\",yield_time_ms:30000,max_output_tokens:15000});\ntext(r.output);\n",{"_893":867},{"_881":2650,"_860":861,"_883":867},{"_884":-5,"_905":2651,"_45":2652,"_888":2653,"_909":2654,"_96":911},"gAAAAABqfNK1dZNuh5yv1fXKw4D2mVEsJzjFa-Qra8lh5Ta0Mqg_9x3sZoK77WczjeR0jiAOfQM8EB--btAfXAZd4svoqgphgqjmc3wbwDd3UxQVRAq6mt2go8MzUWBxTBDGEYlbOvfAV2IK5obd9xl82VHlGxGpLyEo-u078WDfpEBSnExMfNydeLsNI6u_s6hsmMty_l-ul-4uraQzbVHDfRCLq1HcUQZpoegTJZFFc7e5bqIqpAGJVN0MOydErEDKP4W4mmZcvapG1bpCdxrHYYGDd54EKV6B15wSzTXtEyo2IOa0UArIQ3GpFL47H4a9S1pw_s4b7w_GxVWdiuJHTJgOnrWd5p5NyErcZiOeZp8aA9_gFnkWYkc5xbcvT_dCIaHgHUDD0327PxF1ZYy7tUg5DSUYvGeM1MNUOHSYybkY-PG1XN2FOXGJwUO6UxHaWQnUyvFxtCX3qT0xAaHrvWaRVWeafI19zrua9dGN2o10kh3S0fAQK3uofh4hUhXwCFv1xzYs2hwweAXRCKAJTuSChYbHjZ312wmckFkW1yhXT-c5fw_qK9RAzIKi3NsNhMXmYs6iqCnmCE2fL7PyVZKUTLchV3p3IXm5ON2nNymHFwVrYc5nwBAcrD2mbQF-mdW9rjFyMTQfwgfJyuUsZJQjCXUN434IL7AbhvxFDotIf5jhjImxCo_BOvuAHoA7cKui1sja5JtCG9cX98NjZQdtrENXOhTdm7UAf9wzON3msX0IdKWl3pUR4Uz1Vk4x5P9ewYh_5xTf9ySug8hkc7VFYNFGg86Y8T0dHNIsNcT_tLI9h3-O46unTh4XzG6BtQqxHWd_Pt7-dEmCkEsMRLoFLiMcB5MvOmXqH4_nktaxFk5cV5QDU0BZX53hL3OhLUmj4yKA7wEW8oJmOIpMXwwtaaMXWIKbjMRJd5gKePWRdT33EUlYtFtpp-_46ItJEh7dMtDUwddB5HqdnLTT5nWsjJF_L669NcshnfokGcSlkKz80JY=","rs_0e577ca7e8f114c6016a7cd2b49d3c8193872845821833386e",{"_893":867},[2655],{"_49":2656,"_96":914},"**Formatting output for verification**",{"_899":2658,"_881":2659,"_860":861,"_883":867},1786565301475,{"_884":2660,"_45":2652,"_909":2661,"_96":911},[],[2656],{"_881":2663,"_860":861,"_883":867},{"_944":2664,"_45":-5,"_888":2665,"_947":2666,"_96":1055},"call_dgrtVNTkAEJlqUeJuT2MLvRv",{"_893":867},{"_355":2667,"_951":-5},[2668,2669],{"_49":1907,"_96":955},{"_49":2670,"_96":955},"Warning: truncated output (original token count: 12028)\nTotal output lines: 905\n\nWarning: truncated output (original token count: 16585)\nTotal output lines: 1164\n\nscripts/check-maintainability-budgets.mjs 5ms (unchanged)\nscripts/check-migration-history-alignment.ts 22ms (unchanged)\nscripts/check-node-engine.cjs 4ms (unchanged)\nscripts/check-outstanding-issues.mjs 110ms (unchanged)\nscripts/check-owner-scope-api.mjs 19ms (unchanged)\nscripts/check-playwright-browser-revision.mjs 13ms (unchanged)\nscripts/check-pr-mergeability-workflow.mjs 10ms (unchanged)\nscripts/check-pr-policy-workflow.mjs 10ms (unchanged)\nscripts/check-rag-fixtures.mjs 6ms (unchanged)\nscripts/check-retrieval-owner-migration.ts 22ms (unchanged)\nscripts/check-runtime.ts 12ms (unchanged)\nscripts/check-sample-extraction.ts 5ms (unchanged)\nscripts/check-supabase-project.ts 4ms (unchanged)\nscripts/check-type-scale.mjs 5ms (unchanged)\nscripts/check-upload-limit-parity.mjs 8ms (unchanged)\nscripts/check-worker-python-lock.mjs 7ms (unchanged)\nscripts/child-process-result.mjs 2ms (unchanged)\nscripts/ci-change-scope.mjs 60ms (unchanged)\nscripts/ci-triage.mjs 7ms (unchanged)\nscripts/classify-documents.ts 60ms (unchanged)\nscripts/classify-playwright-failures.mjs 6ms (unchanged)\nscripts/classify-visual-baseline-outcome.mjs 12ms (unchanged)\nscripts/clean-worktree.mjs 2ms (unchanged)\nscripts/cleanup-abandoned-reindex-generations.ts 14ms (unchanged)\nscripts/cleanup-storage.ts 16ms (unchanged)\nscripts/cli-utils.ts 3ms (unchanged)\nscripts/compare-retrieval-eval.ts 27ms (unchanged)\nscripts/decompose-indexing-v3.mjs 4ms (unchanged)\nscripts/dependency-report.mjs 13ms (unchanged)\nscripts/deployment-boot-smoke.mjs 12ms (unchanged)\nscripts/derive-unknown-status.ts 19ms (unchanged)\nscripts/design-sync.mjs 10ms (unchanged)\nscripts/design-system-contract-baseline.json 8ms (unchanged)\nscripts/design-system-contract-utils.mjs 306ms (unchanged)\nscripts/dev-free-port.mjs 14ms (unchanged)\nscripts/diagnose-codex-cloud.mjs 10ms (unchanged)\nscripts/embed-registry-records.ts 36ms (unchanged)\nscripts/enable-server-only-stub.mjs 1ms (unchanged)\nscripts/enrich-documents.ts 75ms (unchanged)\nscripts/ensure-codex-cloud-git-remote.mjs 11ms (unchanged)\nscripts/ensure-local-server.mjs 19ms (unchanged)\nscripts/eval-answer-quality.ts 48ms (unchanged)\nscripts/eval-assertions.ts 18ms (unchanged)\nscripts/eval-quality.ts 127ms (unchanged)\nscripts/eval-rag-offline.mjs 2ms (unchanged)\nscripts/eval-rag.ts 35ms (unchanged)\nscripts/eval-retrieval.ts 116ms (unchanged)\nscripts/eval-search-api.ts 18ms (unchanged)\nscripts/eval-search.ts 37ms (unchanged)\nscripts/eval-trend.mjs 19ms (unchanged)\nscripts/eval-utils.ts 59ms (unchanged)\nscripts/external-workflow.mjs 5ms (unchanged)\nscripts/final-merge-audit.mjs 25ms (unchanged)\nscripts/fixtures/assertion-golden.json 7ms (unchanged)\nscripts/fixtures/rag-offline-contract-tests.json 1ms (unchanged)\nscripts/fixtures/rag-ranking-candidate-snapshot.v1.json 65ms (unchanged)\nscripts/fixtures/rag-retrieval-golden.json 8ms (unchanged)\nscripts/flake-ledger.mjs 13ms (unchanged)\nscripts/generate-brand-assets.ts 3ms (unchanged)\nscripts/generate-design-sync-contract.mjs 11ms (unchanged)\nscripts/generate-design-system-adoption.mjs 192ms (unchanged)\nscripts/generate-drift-manifest.ts 16ms (unchanged)\nscripts/generate-sample-documents.ts 30ms (unchanged)\nscripts/generate-site-map.ts 57ms (unchanged)\nscripts/generate-worker-python-lock.mjs 5ms (unchanged)\nscripts/github-action-pins.mjs 6ms (unchanged)\nscripts/guard-next-build.mjs 8ms (unchanged)\nscripts/guard-push.mjs 62ms (unchanged)\nscripts/import-differentials-export.ts 8ms (unchanged)\nscripts/import-documents.ts 28ms (unchanged)\nscripts/import-medications-export.ts 8ms (unchanged)\nscripts/import-services-export.ts 9ms (unchanged)\nscripts/ingestion-autopilot.ts 11ms (unchanged)\nscripts/install-git-hooks.mjs 8ms (unchanged)\nscripts/issues-report.mjs 13ms (unchanged)\nscripts/lib/clinical-aliases.ts 6ms (unchanged)\nscripts/lib/escape-false-openai-key-signatures.mjs 2ms (unchanged)\nscripts/lib/indexing-health-document.ts 4ms (unchanged)\nscripts/lib/parse-differentials-export.ts 44ms (unchanged)\nscripts/lib/ranking-snapshot-builder.ts 9ms (unchanged)\nscripts/lib/ranking-tuning.ts 34ms (unchanged)\nscripts/lib/registry-projection-document.ts 3ms (unchanged)\nscripts/lib/seed-record-cli.ts 10ms (unchanged)\nscripts/lighthouse-measurement-outcome.mjs 3ms (unchanged)\nscripts/lighthouse-time-budget.mjs 2ms 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(unchanged)\ntests/clinical-dashboard-merge-artifacts.test.ts 18ms (unchanged)\ntests/clinical-dashboard-search-utils.test.ts 10ms (unchanged)\ntests/clinical-query-mode.test.ts 9ms (unchanged)\ntests/clinical-review-queue.test.ts 10ms (unchanged)\ntests/clinical-safety.test.ts 8ms (unchanged)\ntests/clinical-search.test.ts 69ms (unchanged)\ntests/clinical-vocabulary.test.ts 7ms (unchanged)\ntests/codebase-index-coverage.test.ts 6ms (unchanged)\ntests/codex-autofix-workflow.test.ts 46ms (unchanged)\ntests/codex-cloud-diagnose.test.ts 6ms (unchanged)\ntests/codex-cloud-setup.test.ts 84ms (unchanged)\ntests/compare-retrieval-eval.test.ts 42ms (unchanged)\ntests/container-ci-contract.test.ts 10ms (unchanged)\ntests/contextual-back-navigation-contract.test.ts 4ms (unchanged)\ntests/copy-to-clipboard.test.ts 5ms (unchanged)\ntests/corpus-grounding.test.ts 27ms (unchanged)\ntests/cross-document-synthesis.test.ts 25ms (unchanged)\ntests/cross-mode-differentials-index.test.ts 13ms (unchanged)\ntests/cross-mode-links.test.ts 12ms (unchanged)\ntests/cross-tenant-staging-config.test.ts 7ms (unchanged)\ntests/cursor-mcp-contract.test.ts 5ms (unchanged)\ntests/dashboard-scroll-padding.test.ts 5ms (unchanged)\ntests/database-skills.test.ts 11ms (unchanged)\ntests/decoration-on-text.contract.test.ts 10ms (unchanged)\ntests/deep-memory-transaction-sql.test.ts 6ms (unchanged)\ntests/deep-memory.test.ts 68ms (unchanged)\ntests/demo-data.test.ts 18ms (unchanged)\ntests/dependency-report.test.ts 6ms (unchanged)\ntests/design-sync-contract.test.ts 13ms (unchanged)\ntests/design-sync-visual-exports.test.ts 7ms (unchanged)\ntests/design-system-adoption.test.ts 113ms (unchanged)\ntests/design-system-contract-utils.test.ts 23ms (unchanged)\ntests/design-system-diagnostics.test.ts 2ms (unchanged)\ntests/design-system-target-evidence.test.ts 4ms (unchanged)\ntests/design-token-contract.test.ts 31ms (unchanged)\ntests/differential-compare-queue-page.dom.test.tsx 6ms (unchanged)\ntests/differential-detail.test.ts 16ms (unchanged)\ntests/differential-diagnosis-links.test.ts 12ms (unchanged)\ntests/differential-section-nav.dom.test.tsx 13ms (unchanged)\ntests/differential-stream-page.dom.test.tsx 4ms (unchanged)\ntests/differential-stream.test.ts 11ms (unchanged)\ntests/differentials-compare-selection.dom.test.tsx 8ms (unchanged)\ntests/differentials-navigation.test.ts 7ms (unchanged)\ntests/differentials-route.test.ts 29ms (unchanged)\ntests/differentials-search-request.test.ts 2ms (unchanged)\ntests/differentials.test.ts 29ms (unchanged)\ntests/disabled-encoding.contract.test.ts 3ms (unchanged)\ntests/display-text.test.ts 8ms (unchanged)\ntests/docs-inventory.test.ts 5ms (unchanged)\ntests/docs-script-refs.test.ts 4ms (unchanged)\ntests/document-admin-rate-limit.test.ts 7ms (unchanged)\ntests/document-admin.dom.test.tsx 13ms (unchanged)\ntests/document-clinical-summary.dom.test.tsx 18ms (unchanged)\ntests/document-clinical-summary.test.ts 8ms (unchanged)\ntests/document-cover-thumbnails.test.ts 6ms (unchanged)\ntests/document-detail-demo-window.test.ts 24ms (unchanged)\ntests/document-detail-performance.test.ts 15ms (unchanged)\ntests/document-enrichment-retrieval-scope.test.ts 8ms (unchanged)\ntests/document-enrichment-visual-counts.test.ts 7ms (unchanged)\ntests/document-enrichment.test.ts 22ms (unchanged)\n",{"_881":2672,"_860":861,"_883":867},{"_1063":2673,"_944":2664,"_45":2674,"_888":2675,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"37\",\"yield_time_ms\":30000,\"max_tokens\":12000}","fc_0e577ca7e8f114c6016a7cd2a03630819384d32f1a45d73383",{"_893":867},{"_881":2677,"_860":861,"_883":867},{"_944":2678,"_45":-5,"_888":2679,"_204":-5,"_947":2680,"_96":949},"call_3AGXvrLdPInMo0nJgHwmJ2lN",{"_893":867},"Script running with cell ID 37\nWall time 10.0 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seconds\nOutput:\n",{"_881":2717,"_860":861,"_883":867},{"_944":2713,"_45":2718,"_972":2145,"_888":2719,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd2715df08193ba6bd4749a56d46a",{"_893":867},{"_881":2721,"_860":861,"_883":867},{"_884":-5,"_905":2722,"_45":2723,"_888":2724,"_909":2725,"_96":911},"gAAAAABqfNJxupCJdkY375cx90mpMI1EEFXqNWAUJXzxvfOFx9D-47vjlpzFWyuDGtrqQzRNMCO_nQOMck1AOIiNo0tHZEZe1sPZiziz8U6W8SxJpJvMUZ5z_yKv6LHpP6lyuYEuk66C50U8kgbtLPV0BS0inQqbzWbyj6FSDUIzn7Zg9KOAvATB1lV1Dik7MkBhO4umyo6_upBL5uNtfb7hsZ-Go8lHUO_K5tHLhIZY2LKfSwo5DUnxhfLTrLdFKAhYqoOmLCu58THiiMYdsmc6hpk1RzzIg1D4WiMSEBySKe7CYTeGf8Gx6hegJ3Z6sAFvsbNbxYt_j0xv4llVn-JFSaAOsHAPHww883ddwkYPsBzJ7KRrmDP-lb5TF7x_Bp4QOOTyXyOxABxclwUqACfQ5yu-4so_7OOkanDzpfuuVQjstR4ZD3piPsmLq6YaVgNCzf3p3Cu7umn_zsztyj-FPwv4as2qddcNgJaI8qC6a4EkOKh3sEFsGGbkrQVJtWeGwwR57mtBImaAIUzTvVRpyTRrYhUUhJ-w-qMslBO1bsPKZepNQ9_ymo6EJV2wBzSsRoU-xtciTK2ONBN7N-m32OiQRWEyWWEf2vgyZS7HaKI7Rr5iwYHf1DgRE2yLCJibst9qcTUirWnuqeve3WLrENo09iRnXHTBfO88v3uqduRJ9PiJSFAsSLmdy5Yd_UwfRjG1z7Ve-kHJLLrHx6Tb14zBHpSec-2tjZK_WJrDvG6_ozlMXNx7eb38CW2LPWqIev0ypr2mVUBSRaIwVp33J8dJiHBNw0_NEYprSCMBcMzGeD9o2LhGqdSLcJV3kzTUtH92ijvKDYKzflHW_zyzmghJIkkRpxMv0XgMEBVD8aV9JNWCfy9kryfoS35wpTm_EXqbBiyTQrz8opm00HmzncNmf8IbcfgeWsn6BkfefXqvzVKovFyxqilXkraVXWBqdJWQH53a","rs_0e577ca7e8f114c6016a7cd270db108193bbefb1f4d5cd604c",{"_893":867},[],{"_899":2727,"_881":2728,"_860":861,"_883":867},1786565233384,{"_884":2729,"_45":2723,"_909":2730,"_96":911},[],[],{"_881":2732,"_860":861,"_883":867},{"_944":2733,"_45":-5,"_888":2734,"_204":-5,"_947":2735,"_96":949},"call_ewJrYzyQWcx5RewI2sqMZEly",{"_893":867},{"_355":2736,"_951":-5},[2737,2738,2739],{"_49":2741,"_96":955},{"_49":341,"_96":955},{"_49":2740,"_96":955},"SESSION_ID=70532","Script completed\nWall time 1.2 seconds\nOutput:\n",{"_881":2743,"_860":861,"_883":867},{"_944":2733,"_45":2744,"_972":2745,"_888":2746,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd2686968819396f0e15959713f83","const r = await tools.exec_command({cmd:\"npm run format && npm run verify:pr-local\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":5000});\ntext(r.output); if (r.session_id) text(`SESSION_ID=${r.session_id}`);\n",{"_893":867},{"_881":2748,"_860":861,"_883":867},{"_884":-5,"_905":2749,"_45":2750,"_888":2751,"_909":2752,"_96":911},"gAAAAABqfNJo1o7oFw0e1ISCd1OJr3CNjKZl7-GldNhDePzv2aEQRhIfNwNmhBHQhRhCkoP5addA67mz4bLuatt4baCOFOkuvZxeUL1y38OKAjEuBd2yyolKc22u0LuJe3ZMvO14-sdMKlcZ8HU1XONV6dro5CAG1CTjSGNHTU7jUcpd73Llj_F4zASeRSnWhQ0pYY20i8jgsgj-O9mazixHAbKIyD2T7r12BHbaEhcj-WcEP6-eA1yBdXuzfrADr2vjWp1XFuPRXpYiz43qyJM5VEBfqCZpBbiY9S9Z7oP_fXNN9fC5kCOVGW5oys9EH3mdZ9O2Zk21Kz3uWd7uZ4f-HQJgjuTxYozALpbLCMkIesf-hShe0zDSk6CboMYTk9Nmu9ScSbHpqlSyn5JRxNpbvSzvJe4VTFASXzq7cv82QlGZJbJOxe266i7YaM81SYHTDoP7M5mb9HnRuzQiqKMDlhxnNm3iegWFWwYkiACVTWD6ujAEZbUy3lwqypjnCnUH_R7k5yRSH56Trq1GfIi0pps-JtvW_kZY1teJRO9Amkj-a89Py8sl8uDy2loqPneuSa-UUYbFrZEG9CzJDrEDL_qaTf_StwH4o9AaKsilt_-6YCacavo7fQoRM_J3reCrcfsdObfC40_99hrJ1esEFr-EODu8UslTlc4SnlFzYMHVLdIvsfljmqqz4-6bzVEGEMTU0V9uVeENPjWimU6CE3047uzmnQHqz33BH2uiiYbzYo1xccwsWzm8QU5P8eeUCLBtpGH7lU7wCEafHi-zXz-KE3OipcR_ll532AGUTipZCqvmje_M9phzRIv9XgQJ2UtBiv9Ei3m5SyjD0HkSO16otxShS8srybvw-EtWv2IDoFqe6LFJ81nXVctPY8K-DKI3bB8BQOUdVuQnq_6etJFz6cwmTrc_qBrJjRq6uKpWGUtjlNXKbqfT3d_6bjHlPByFrN9JsGCZ_HyD0p0ulDC1fMPBoTdCziSVLOIjAAU6Sr5APlA=","rs_0e577ca7e8f114c6016a7cd267b2a88193b459dbd9150f9d76",{"_893":867},[2753],{"_49":2754,"_96":914},"**Verifying final formatting**",{"_899":2756,"_881":2757,"_860":861,"_883":867},1786565224453,{"_884":2758,"_45":2750,"_909":2759,"_96":911},[],[2754],{"_881":2761,"_860":861,"_883":867},{"_944":2762,"_45":-5,"_888":2763,"_204":-5,"_947":2764,"_96":949},"call_BccHJRYHWcYV6DqwEQTAFPJC",{"_893":867},{"_355":2765,"_951":-5},[2766,2767],{"_49":2768,"_96":955},{"_49":1103,"_96":955},"Script completed\nWall time 0.1 seconds\nOutput:\n",{"_899":2770,"_881":2771,"_860":861,"_883":867},1786565222077,{"_1107":2772,"_45":2773,"_874":117,"_96":1110},[2774],"exec-cb63888b-fdab-4eaf-9578-ba7f03916d1c",{"_366":2775,"_9":2776,"_173":2777},"@@ -3,3 +3,3 @@\n import { Eraser, Plus, UserRound, X } from \"lucide-react\";\n-import { useEffect, useId, useState } from \"react\";\n+import { useId, useState } from \"react\";\n \n@@ -119,3 +119,2 @@\n onToggle,\n- resetNonce,\n }: {\n@@ -123,3 +122,2 @@\n onToggle: (slug: string) => void;\n- resetNonce: number;\n }) {\n@@ -128,7 +126,2 @@\n \n- // Clearing the profile should empty the search box too.\n- useEffect(() => {\n- setTerm(\"\");\n- }, [resetNonce]);\n-\n const options = catalogueMedicationOptions();\n@@ -335,3 +328,7 @@\n \n- \n+ \n \n",{"_1115":-5,"_96":1116},"/workspace/Database/src/components/clinical-dashboard/patient-profile-panel.tsx",{"_881":2779,"_860":861,"_883":867},{"_944":2762,"_45":2780,"_972":2781,"_888":2782,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd25f385881938eb5a06d1d8f3b7b","const patch = \"*** Begin Patch\\n*** Update File: /workspace/Database/src/components/clinical-dashboard/patient-profile-panel.tsx\\n@@\\n-import { useEffect, useId, useState } from \\\"react\\\";\\n+import { useId, useState } from \\\"react\\\";\\n@@\\n function MedicationPicker({\\n selected,\\n onToggle,\\n- resetNonce,\\n }: {\\n selected: string[];\\n onToggle: (slug: string) => void;\\n- resetNonce: number;\\n }) {\\n@@\\n- // Clearing the profile should empty the search box too.\\n- useEffect(() => {\\n- setTerm(\\\"\\\");\\n- }, [resetNonce]);\\n-\\n@@\\n- \\n+ \\n*** End Patch\";\ntext(await tools.apply_patch(patch));\n",{"_893":867},{"_881":2784,"_860":861,"_883":867},{"_884":-5,"_905":2785,"_45":2786,"_888":2787,"_909":2788,"_96":911},"gAAAAABqfNJfXDJVXYxx7ma549MLOXMk1yzCvflAtn1MGEyu-OQJ5tolrKtEgxThmIR5lwG0mAngrK5RJZZ0qImUvpTCZBqnieL5_2uHwQjP_chL9RviDdpv0UYZ8-RgBvI3yuIxfy6r-muwAwvotQqHmWSha_KeJNC8OGqU_tHDbu4VF-_YQ4Pogcd4YoBal963_oTPG5Z1GTETwxFZFp9ETdBNT42yeDQbBedhm-RtnvijqdgZjBsSKmEcdKTrNoU_Ugt9se2C-kKX9EHiBo15lD3nnof4yrnrz7fkCBc-nf8arLAx0hAazlqn8FGi7GFepJjSN9OEqROpYw0_FwCyAQZ8SAMlajipygy3zM5kP5sneWkB7suzSqzIHCJkh9cQiVLNj9DQRq25FPkReE3ulpw54sCOwhySlFinip9ssadb-RbIwiCUxnKkRqzUN40Nz6dDbkU-ugPC21hQ7i5SMlsXEc4i0vLHPjL97Zfqd9ZmRY6fGvqD547Vd2w0u8SKmKhoXhunBxKdwaC9jm2bfsfFh98YniRW0QN1WTL_LgmpVZNiYhshWXwJornrs2kc7j0J6ueMH1gb-v5qZgUyYO4U2HqBTo_1RvT1I9LOsMz1i_Q8Y4cW7ZB3MJbhzl8eZWDYWHMuGfJ5g-JZj3_QQ-ec9N6xO8IiuWs2wkn-clPaW2dHrpwVP6b3cdktIc0B04WbzWcLU3JsPryobKPTFUV6eeMZyDJkkz2Xi8WbzAWaPUGLlJOeU6Jl50jC-3egdUPF0UU0_GzNJvjWsxAIo7PPfj-JJGd2pRF0PP4hnECO6QDIz5PvvRK3rwyNrIre0XUcldm5OoEvOQBsuJysfAntySnsIjj8mso3mX7Iyepoq1SsewjCxIIcmPc3qKAKS71Opla-tpSIscVRSlRnkfefk6_c3dDC5180mZm-Ach0dGYUyIATmOQXlAJQC3I0zRwuqwAtAbh0CIZh_N-NKNfFwEhUKURk76H8T-D1K-AhCXyaFPfnBXMvlVbbkX1ppO4DUGyVFvSWlyOIjdSNqAvEXE-Ek3M_Qrj9xKH2ZnKbIJPyYXy_uXVxQOnLtjTwgWUrG2-kHLKC74c-4tgCZ2xYbnbDgrkHS8Y5dbIs7BMVynBNfccIcF1P1WxWMIOaYHCEyN4e","rs_0e577ca7e8f114c6016a7cd25df8a4819385b34fb096ef5936",{"_893":867},[2789],{"_49":2790,"_96":914},"**Removing resetNonce prop and key remounting**",{"_899":2792,"_881":2793,"_860":861,"_883":867},1786565215280,{"_884":2794,"_45":2786,"_909":2795,"_96":911},[],[2790],{"_881":2797,"_860":861,"_883":867},{"_944":2798,"_45":-5,"_888":2799,"_947":2800,"_96":1055},"call_YF15cJGuHfUlmFMkVZc89GM2",{"_893":867},{"_355":2801,"_951":-5},[2802,2803],{"_49":2805,"_96":955},{"_49":2804,"_96":955},"\n/workspace/Database/src/components/clinical-dashboard/patient-profile-panel.tsx\n 131:5 error Error: Calling setState synchronously within an effect can trigger cascading renders\n\nEffects are intended to synchronize state between React and external systems such as manually updating the DOM, state management libraries, or other platform APIs. In general, the body of an effect should do one or both of the following:\n* Update external systems with the latest state from React.\n* Subscribe for updates from some external system, calling setState in a callback function when external state changes.\n\nCalling setState synchronously within an effect body causes cascading renders that can hurt performance, and is not recommended. (https://react.dev/learn/you-might-not-need-an-effect).\n\n/workspace/Database/src/components/clinical-dashboard/patient-profile-panel.tsx:131:5\n 129 | // Clearing the profile should empty the search box too.\n 130 | useEffect(() => {\n> 131 | setTerm(\"\");\n | ^^^^^^^ Avoid calling setState() directly within an effect\n 132 | }, [resetNonce]);\n 133 |\n 134 | const options = catalogueMedicationOptions(); react-hooks/set-state-in-effect\n\n✖ 1 problem (1 error, 0 warnings)\n\n\nPR-local verification summary:\n- completed: check:runtime, check:installed-lock-parity, format:changed, check:npm-ci-dry-run, sitemap:check, docs:check-index, docs:check-inventory, docs:check-scripts, docs:check-links, check:branch-review-ledger, check:outstanding-issues\n- failed: lint (exit 1)\n- not reached: typecheck, test, build, check:rag:fixtures\n","Script completed\nWall time 0.0 seconds\nOutput:\n",{"_881":2807,"_860":861,"_883":867},{"_1063":2808,"_944":2798,"_45":2809,"_888":2810,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"33\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd25b743c81939573a20f23662af2",{"_893":867},{"_899":2812,"_881":2813,"_860":861,"_883":867},1786565207648,{"_923":2814,"_925":2815,"_927":2816,"_929":930,"_865":2817,"_932":1740,"_45":2818,"_934":2819,"_936":937,"_874":966,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 verify:pr-local\n> node scripts/verify-pr-local.mjs\n\nChanged files: data/medication-interaction-index.json, docs/branch-review-ledger.md, docs/codebase-index.md, docs/design-system/COMPONENTS.md, docs/design-system/adoption-manifest.json, docs/samd-classification-medication-considerations.md, docs/scripts-index.md, docs/search-chrome-behaviour.md, package.json, scripts/build-medication-interaction-index.ts, src/app/globals.css, src/components/ClinicalDashboard.tsx, src/components/clinical-dashboard/global-search-shell.tsx, src/components/clinical-dashboard/master-search-header.tsx, src/components/clinical-dashboard/medication-considerations.tsx, src/components/clinical-dashboard/medication-nav-header.tsx, src/components/clinical-dashboard/medication-prescribing-workspace.tsx, src/components/clinical-dashboard/medication-record-page.tsx, src/components/clinical-dashboard/mobile-composer-reserve.ts, src/components/clinical-dashboard/patient-details-dock-action.tsx, src/components/clinical-dashboard/patient-profile-context.tsx, src/components/clinical-dashboard/patient-profile-panel.tsx, src/lib/medication-interaction-lexicon.ts, src/lib/medication-interactions.ts, src/lib/medication-patient-alerts.ts, src/lib/mode-home-composer.ts, src/lib/patient-profile-storage.ts, tests/helpers/style-contracts.ts, tests/in-page-nav-route-sections.dom.test.tsx, tests/medication-interaction-lexicon-coverage.test.ts, tests/medication-interaction-surfaces.dom.test.tsx, tests/medication-interactions.test.ts, tests/medication-record-page.dom.test.tsx, tests/patient-details-dock-action.dom.test.tsx, tests/patient-profile-medications.dom.test.tsx, tests/phone-dock-addon-contract.test.ts\n\n> npm run check:runtime\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:runtime\n> node scripts/run-tsx.mjs scripts/check-runtime.ts\n\n[Runtime Check] PASS: Node runtime 24.19.0 matches required Node 24.x.\n[Runtime Check] PASS: npm runtime 11.17.0 matches required npm 11.x.\n\n> npm run check:installed-lock-parity\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:installed-lock-parity\n> node scripts/check-installed-lock-parity.mjs\n\n[installed-lock-parity] next: 16.3.0\n[installed-lock-parity] react: 19.2.8\n[installed-lock-parity] react-dom: 19.2.8\n[installed-lock-parity] eslint: 9.39.5\n[installed-lock-parity] playwright: 1.62.1\n[installed-lock-parity] typescript: 6.0.3\n[installed-lock-parity] vitest: 4.1.10\n[installed-lock-parity] full tree: 760 package locations; 51566 files.\n\n> npm run format:changed\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 format:changed\n> node scripts/check-format-changed.mjs\n\nChecking formatting...\nAll matched files use Prettier code style!\n\n> npm run check:npm-ci-dry-run\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:npm-ci-dry-run\n> npm ci --dry-run --ignore-scripts\n\n\nup to date in 2s\n\n205 packages are looking for funding\n run `npm fund` for details\n\n> npm run sitemap:check\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 sitemap:check\n> node scripts/run-tsx.mjs scripts/generate-site-map.ts --check\n\n\n> npm run docs:check-index\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-index\n> node scripts/check-codebase-index-coverage.mjs\n\ndocs/codebase-index.md coverage OK: all 50 repository roots/modules/routes and all schema tables are indexed.\n\n> npm run docs:check-inventory\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-inventory\n> node scripts/update-docs-inventory.mjs --check\n\nDocs inventory current: 228 script files, 239 npm scripts.\n\n> npm run docs:check-scripts\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-scripts\n> node scripts/check-docs-script-refs.mjs\n\ndocs script-ref check passed: 444 npm-run reference(s) resolve to real scripts.\n\n> npm run docs:check-links\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-links\n> node scripts/check-docs-links.mjs\n\ndocs link check passed: 1659 repo path references resolve.\n\n> npm run check:branch-review-ledger\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:branch-review-ledger\n> node scripts/check-branch-review-ledger.mjs --self-test && node scripts/branch-review-ledger.mjs --self-test && node scripts/merge-branch-review-ledger.mjs --self-test && node scripts/check-branch-review-ledger.mjs\n\nbranch-review-ledger self-test passed.\nbranch-review-ledger self-test passed.\nmerge-branch-review-ledger self-test passed.\nBranch review ledger guard passed: 867 live table records + 1206 archived (867 under the 2026-07-29 machine-readable contract), ledger merge active, six cells each, no conflict markers, mojibake, heading records, or duplicates.\n\n> npm run check:outstanding-issues\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:outstanding-issues\n> node scripts/check-outstanding-issues.mjs --self-test && node scripts/outstanding-issues.mjs --self-test && node scripts/check-outstanding-issues.mjs\n\noutstanding-issues self-test passed.\noutstanding-issues writer self-test passed.\nOutstanding-issues guard passed: 307 rows (112 open, 195 archived), unique ids, next-id=310 above the highest, no merge driver, no ids deleted from base 8af658690773.\n\n> npm run lint\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 lint\n> node scripts/run-heavy.mjs --npm-script lint:internal\n\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 lint:internal\n> node --max-old-space-size=8192 ./node_modules/eslint/bin/eslint.js src tests scripts worker supabase playwright eslint.config.mjs next.config.ts playwright.config.ts playwright.visual.config.ts vitest.config.mts --max-warnings 0 --no-error-on-unmatched-pattern --cache --cache-location node_modules/.cache/eslint/\n\n\n/workspace/Database/src/components/clinical-dashboard/patient-profile-panel.tsx\n 131:5 error Error: Calling setState synchronously within an effect can trigger cascading renders\n\nEffects are intended to synchronize state between React and external systems such as manually updating the DOM, state management libraries, or other platform APIs. In general, the body of an effect should do one or both of the following:\n* Update external systems with the latest state from React.\n* Subscribe for updates from some external system, calling setState in a callback function when external state changes.\n\nCalling setState synchronously within an effect body causes cascading renders that can hurt performance, and is not recommended. (https://react.dev/learn/you-might-not-need-an-effect).\n\n/workspace/Database/src/components/clinical-dashboard/patient-profile-panel.tsx:131:5\n 129 | // Clearing the profile should empty the search box too.\n 130 | useEffect(() => {\n> 131 | setTerm(\"\");\n | ^^^^^^^ Avoid calling setState() directly within an effect\n 132 | }, [resetNonce]);\n 133 |\n 134 | const options = catalogueMedicationOptions(); react-hooks/set-state-in-effect\n\n✖ 1 problem (1 error, 0 warnings)\n\n\nPR-local verification summary:\n- completed: check:runtime, check:installed-lock-parity, format:changed, check:npm-ci-dry-run, sitemap:check, docs:check-index, docs:check-inventory, docs:check-scripts, docs:check-links, check:branch-review-ledger, check:outstanding-issues\n- failed: lint (exit 1)\n- not reached: typecheck, test, build, check:rag:fixtures\n","/bin/bash -lc 'npm run verify:pr-local'",[2820],283113,"exec-e0888e6b-e832-4680-85c3-4377af0d8892","33253",{"_925":2821,"_96":941},"npm run verify:pr-local",{"_881":2823,"_860":861,"_883":867},{"_944":2824,"_45":-5,"_888":2825,"_204":-5,"_947":2826,"_96":949},"call_RMK9XSCFEt1aZ1o934Z7FlOG",{"_893":867},"Script running with cell ID 33\nWall time 10.0 seconds\nOutput:\n",{"_881":2828,"_860":861,"_883":867},{"_944":2824,"_45":2829,"_972":2830,"_888":2831,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd24caa40819398bf983e91a6e423","const r = await tools.write_stdin({session_id:33253,chars:\"\",yield_time_ms:30000,max_output_tokens:30000});\ntext(r.output);\n",{"_893":867},{"_881":2833,"_860":861,"_883":867},{"_944":2834,"_45":-5,"_888":2835,"_947":2836,"_96":1055},"call_8w8WkxflDr2ufDDJuI8kpGCP",{"_893":867},{"_355":2837,"_951":-5},[2838,2839],{"_49":2840,"_96":955},{"_49":341,"_96":955},"Script completed\nWall time 11.5 seconds\nOutput:\n",{"_881":2842,"_860":861,"_883":867},{"_1063":2843,"_944":2834,"_45":2844,"_888":2845,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"32\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd23e9cf08193b2dfb7820e8e901f",{"_893":867},{"_881":2847,"_860":861,"_883":867},{"_944":2848,"_45":-5,"_888":2849,"_204":-5,"_947":2850,"_96":949},"call_3rJQJyv1YWeltev7G9abYWio",{"_893":867},"Script running with cell ID 32\nWall time 10.0 seconds\nOutput:\n",{"_881":2852,"_860":861,"_883":867},{"_944":2848,"_45":2853,"_972":2830,"_888":2854,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd22bde208193b85e4ecb0e22ffe7",{"_893":867},{"_881":2856,"_860":861,"_883":867},{"_944":2857,"_45":-5,"_888":2858,"_947":2859,"_96":1055},"call_de8nlms78FgZ9Muwqhe3uNOD",{"_893":867},{"_355":2860,"_951":-5},[2861,2862],{"_49":2204,"_96":955},{"_49":341,"_96":955},{"_881":2864,"_860":861,"_883":867},{"_1063":2865,"_944":2857,"_45":2866,"_888":2867,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"31\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd21811d08193abbd36bf714dfdcf",{"_893":867},{"_881":2869,"_860":861,"_883":867},{"_944":2870,"_45":-5,"_888":2871,"_204":-5,"_947":2872,"_96":949},"call_5vVCdcaxtcZuNt07sJUr0ybW",{"_893":867},"Script running with cell ID 31\nWall time 10.1 seconds\nOutput:\n",{"_881":2874,"_860":861,"_883":867},{"_944":2870,"_45":2875,"_972":2830,"_888":2876,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd20aef748193b20129736eba34a9",{"_893":867},{"_881":2878,"_860":861,"_883":867},{"_944":2879,"_45":-5,"_888":2880,"_947":2881,"_96":1055},"call_3qyYNwDlLGiw25K2RDcEBpmr",{"_893":867},{"_355":2882,"_951":-5},[2883,2884],{"_49":2886,"_96":955},{"_49":2885,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 lint\n> node scripts/run-heavy.mjs --npm-script lint:internal\n\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 lint:internal\n> node --max-old-space-size=8192 ./node_modules/eslint/bin/eslint.js src tests scripts worker supabase playwright eslint.config.mjs next.config.ts playwright.config.ts playwright.visual.config.ts vitest.config.mts --max-warnings 0 --no-error-on-unmatched-pattern --cache --cache-location node_modules/.cache/eslint/\n\n","Script completed\nWall time 18.2 seconds\nOutput:\n",{"_881":2888,"_860":861,"_883":867},{"_1063":2889,"_944":2879,"_45":2890,"_888":2891,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"30\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd1f606048193930eedbad7065054",{"_893":867},{"_881":2893,"_860":861,"_883":867},{"_944":2894,"_45":-5,"_888":2895,"_204":-5,"_947":2896,"_96":949},"call_91YV7vbyDzscqFhWXIJmXor1",{"_893":867},"Script running with cell ID 30\nWall time 10.0 seconds\nOutput:\n",{"_881":2898,"_860":861,"_883":867},{"_944":2894,"_45":2899,"_972":2830,"_888":2900,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd1e9d7588193b4f5c6f1c1ab5fcf",{"_893":867},{"_881":2902,"_860":861,"_883":867},{"_944":2903,"_45":-5,"_888":2904,"_947":2905,"_96":1055},"call_vMOZ0Rnt1cpSnVRaAsnt0fqC",{"_893":867},{"_355":2906,"_951":-5},[2907,2908],{"_49":2910,"_96":955},{"_49":2909,"_96":955},"branch-review-ledger self-test passed.\nmerge-branch-review-ledger self-test passed.\nBranch review ledger guard passed: 867 live table records + 1206 archived (867 under the 2026-07-29 machine-readable contract), ledger merge active, six cells each, no conflict markers, mojibake, heading records, or duplicates.\n\n> npm run check:outstanding-issues\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:outstanding-issues\n> node scripts/check-outstanding-issues.mjs --self-test && node scripts/outstanding-issues.mjs --self-test && node scripts/check-outstanding-issues.mjs\n\noutstanding-issues self-test passed.\noutstanding-issues writer self-test passed.\nOutstanding-issues guard passed: 307 rows (112 open, 195 archived), unique ids, next-id=310 above the highest, no merge driver, no ids deleted from base 8af658690773.\n\n> npm run lint\n","Script completed\nWall time 15.6 seconds\nOutput:\n",{"_881":2912,"_860":861,"_883":867},{"_1063":2913,"_944":2903,"_45":2914,"_888":2915,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"29\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd1d6993881938b6ff5cc982768b4",{"_893":867},{"_881":2917,"_860":861,"_883":867},{"_944":2918,"_45":-5,"_888":2919,"_204":-5,"_947":2920,"_96":949},"call_yolitRVkUqC2Ha6GnEdAkCUR",{"_893":867},"Script running with cell ID 29\nWall time 10.0 seconds\nOutput:\n",{"_881":2922,"_860":861,"_883":867},{"_944":2918,"_45":2923,"_972":2830,"_888":2924,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd1c895008193a508fd2ad1d56a6b",{"_893":867},{"_881":2926,"_860":861,"_883":867},{"_944":2927,"_45":-5,"_888":2928,"_947":2929,"_96":1055},"call_33tZcWjU51MLnah3cNyUvQEI",{"_893":867},{"_355":2930,"_951":-5},[2931,2932],{"_49":2228,"_96":955},{"_49":2933,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-scripts\n> node scripts/check-docs-script-refs.mjs\n\ndocs script-ref check passed: 444 npm-run reference(s) resolve to real scripts.\n\n> npm run docs:check-links\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-links\n> node scripts/check-docs-links.mjs\n\ndocs link check passed: 1659 repo path references resolve.\n\n> npm run check:branch-review-ledger\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:branch-review-ledger\n> node scripts/check-branch-review-ledger.mjs --self-test && node scripts/branch-review-ledger.mjs --self-test && node scripts/merge-branch-review-ledger.mjs --self-test && node scripts/check-branch-review-ledger.mjs\n\nbranch-review-ledger self-test passed.\n",{"_881":2935,"_860":861,"_883":867},{"_1063":2936,"_944":2927,"_45":2937,"_888":2938,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"28\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd1b46fb48193981357ae17cd37fa",{"_893":867},{"_881":2940,"_860":861,"_883":867},{"_944":2941,"_45":-5,"_888":2942,"_204":-5,"_947":2943,"_96":949},"call_eeW8mCWteNFqOn0ci4WMepXz",{"_893":867},"Script running with cell ID 28\nWall time 10.0 seconds\nOutput:\n",{"_881":2945,"_860":861,"_883":867},{"_944":2941,"_45":2946,"_972":2830,"_888":2947,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd1a7059c8193885294619f212387",{"_893":867},{"_881":2949,"_860":861,"_883":867},{"_944":2950,"_45":-5,"_888":2951,"_947":2952,"_96":1055},"call_vZZ0SKZ7FdJQe3kkrAWOEVpv",{"_893":867},{"_355":2953,"_951":-5},[2954,2955],{"_49":1627,"_96":955},{"_49":2956,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 sitemap:check\n> node scripts/run-tsx.mjs scripts/generate-site-map.ts --check\n\n\n> npm run docs:check-index\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-index\n> node scripts/check-codebase-index-coverage.mjs\n\ndocs/codebase-index.md coverage OK: all 50 repository roots/modules/routes and all schema tables are indexed.\n\n> npm run docs:check-inventory\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 docs:check-inventory\n> node scripts/update-docs-inventory.mjs --check\n\nDocs inventory current: 228 script files, 239 npm scripts.\n\n> npm run docs:check-scripts\n",{"_881":2958,"_860":861,"_883":867},{"_1063":2959,"_944":2950,"_45":2960,"_888":2961,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"27\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd191cc488193826596d7f6419b52",{"_893":867},{"_881":2963,"_860":861,"_883":867},{"_944":2964,"_45":-5,"_888":2965,"_204":-5,"_947":2966,"_96":949},"call_pCSAgqLpgnsfzmxEMwIu7xUS",{"_893":867},"Script running with cell ID 27\nWall time 10.0 seconds\nOutput:\n",{"_881":2968,"_860":861,"_883":867},{"_944":2964,"_45":2969,"_972":2830,"_888":2970,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd185194c8193a9653dadfb1b7470",{"_893":867},{"_881":2972,"_860":861,"_883":867},{"_944":2973,"_45":-5,"_888":2974,"_947":2975,"_96":1055},"call_Bp9kxHPG63KPYqVjAY7FhR4j",{"_893":867},{"_355":2976,"_951":-5},[2977,2978],{"_49":2180,"_96":955},{"_49":2979,"_96":955},"[installed-lock-parity] next: 16.3.0\n[installed-lock-parity] react: 19.2.8\n[installed-lock-parity] react-dom: 19.2.8\n[installed-lock-parity] eslint: 9.39.5\n[installed-lock-parity] playwright: 1.62.1\n[installed-lock-parity] typescript: 6.0.3\n[installed-lock-parity] vitest: 4.1.10\n[installed-lock-parity] full tree: 760 package locations; 51566 files.\n\n> npm run format:changed\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 format:changed\n> node scripts/check-format-changed.mjs\n\nChecking formatting...\nAll matched files use Prettier code style!\n\n> npm run check:npm-ci-dry-run\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:npm-ci-dry-run\n> npm ci --dry-run --ignore-scripts\n\n\nup to date in 2s\n\n205 packages are looking for funding\n run `npm fund` for details\n\n> npm run sitemap:check\n",{"_881":2981,"_860":861,"_883":867},{"_1063":2982,"_944":2973,"_45":2983,"_888":2984,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"26\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd170c0b481939a8405e286af332f",{"_893":867},{"_881":2986,"_860":861,"_883":867},{"_944":2987,"_45":-5,"_888":2988,"_204":-5,"_947":2989,"_96":949},"call_UYLTpDFfpZPVW3sSSuOaljgd",{"_893":867},"Script running with cell ID 26\nWall time 10.0 seconds\nOutput:\n",{"_881":2991,"_860":861,"_883":867},{"_944":2987,"_45":2992,"_972":2830,"_888":2993,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd164665881938a2e6cbf64266b60",{"_893":867},{"_881":2995,"_860":861,"_883":867},{"_884":-5,"_905":2996,"_45":2997,"_888":2998,"_909":2999,"_96":911},"gAAAAABqfNFkgXZpO3Wyl0ADi7qZ37njOK6dSSFsLCwJVFcNog4rVh1WmqvTVhMYPK4qSZB1U2sOyoXK5zYyl7Ku8nbNk7o9guXN8aJamFKqc8EPVA8ZjbY9qOKXhinFziDi7fpXJBbKPJwmoyrw83PZH_sJAPXomsMXqtOyonBSOtm3TobC9WjoqNoeRUgMSqX70-I2fyZVEL4Og_yt2o0GLV7076ttEBMngzGsFltqDtYuZMZ_YRmJxPocIAvyf05_S2RWW0e3piBep18-SlvK8iJVJXLH-BM-sJCKfjVXpjQXeLM2ji0bnvlItlW-pbKakaMMzGZuU_xSJ4TG_WOJasOeKoMRBHlill65HLr9LI2XILUDYhH9tm0ZcRoloxhD6Tm0sYkW87U4xp1DQV67o84Im_626_dXh4t85KlvjFVrjScOSM2zI3QZ7zr-_xk4FSFYDxAf-qXEYAB2KdKgVe4jkckv1RCbXhXT9uuhmQEUM5SY-TEoURY2DyXAWgdpWJ__JUdRp0Q2FO2mKIhgzllzmgkb4QYq8mebSWiHR7fWr6Mfu7GagKM7TuXqhl58XT7D2BetFqQFBc0tKEC8JRxb-t4YJa9Ex5tSiMU0WDL7UU5GGeU4F26tyUk5guqZKy77eftLh3Vt9v7l6gEOnH8bnKJjFijkIiWGayt9Erl1sjaKmOJhvoOqC9VO4aO0IQOwtJja7qiiHgtb5XVAwQ0SBFYwpmw2JTRvJ_nHsEhcAG9pngnGJLJ6JWxsoZyET_51hGC4vEkRs_ohIxPzv7ja8GbdKtWA81kGashrtt_Hyu85SBOBBBBnRFP7U-oD0y9QB3exv3sGI5I4Hc6nEnATQMx-Jph4lWrLabZDpvS7Mbmg4D4CXc88rmtXbLRz6FgKxEpKzZiPIy_ucVwshxJssdUO0YO20aUfeNSofyAHkdkSP4GVzi1D1ctvoCOdgV_wc2bwZ3Jw9oqpVv8yWGinwzr5x5CaHcw79L-OyLz7WlYJ2rDJm2TvBAHlNMhzDgSxetHbZsk8lrKaeZc3KYnU5887pg==","rs_0e577ca7e8f114c6016a7cd1630bc48193a4dcc90541009971",{"_893":867},[3000],{"_49":3001,"_96":914},"**Investigating partial session disappearance**",{"_899":3003,"_881":3004,"_860":861,"_883":867},1786564964430,{"_884":3005,"_45":2997,"_909":3006,"_96":911},[],[3001],{"_881":3008,"_860":861,"_883":867},{"_944":3009,"_45":-5,"_888":3010,"_947":3011,"_96":1055},"call_QqSfV5KoiXd3JZaZNExun1VB",{"_893":867},{"_355":3012,"_951":-5},[3013,3014],{"_49":1339,"_96":955},{"_49":3015,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 verify:pr-local\n> node scripts/verify-pr-local.mjs\n\nChanged files: data/medication-interaction-index.json, docs/branch-review-ledger.md, docs/codebase-index.md, docs/design-system/COMPONENTS.md, docs/design-system/adoption-manifest.json, docs/samd-classification-medication-considerations.md, docs/scripts-index.md, docs/search-chrome-behaviour.md, package.json, scripts/build-medication-interaction-index.ts, src/app/globals.css, src/components/ClinicalDashboard.tsx, src/components/clinical-dashboard/global-search-shell.tsx, src/components/clinical-dashboard/master-search-header.tsx, src/components/clinical-dashboard/medication-considerations.tsx, src/components/clinical-dashboard/medication-nav-header.tsx, src/components/clinical-dashboard/medication-prescribing-workspace.tsx, src/components/clinical-dashboard/medication-record-page.tsx, src/components/clinical-dashboard/mobile-composer-reserve.ts, src/components/clinical-dashboard/patient-details-dock-action.tsx, src/components/clinical-dashboard/patient-profile-context.tsx, src/components/clinical-dashboard/patient-profile-panel.tsx, src/lib/medication-interaction-lexicon.ts, src/lib/medication-interactions.ts, src/lib/medication-patient-alerts.ts, src/lib/mode-home-composer.ts, src/lib/patient-profile-storage.ts, tests/helpers/style-contracts.ts, tests/in-page-nav-route-sections.dom.test.tsx, tests/medication-interaction-lexicon-coverage.test.ts, tests/medication-interaction-surfaces.dom.test.tsx, tests/medication-interactions.test.ts, tests/medication-record-page.dom.test.tsx, tests/patient-details-dock-action.dom.test.tsx, tests/patient-profile-medications.dom.test.tsx, tests/phone-dock-addon-contract.test.ts\n\n> npm run check:runtime\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:runtime\n> node scripts/run-tsx.mjs scripts/check-runtime.ts\n\n[Runtime Check] PASS: Node runtime 24.19.0 matches required Node 24.x.\n[Runtime Check] PASS: npm runtime 11.17.0 matches required npm 11.x.\n\n> npm run check:installed-lock-parity\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:installed-lock-parity\n> node scripts/check-installed-lock-parity.mjs\n\n",{"_881":3017,"_860":861,"_883":867},{"_1063":3018,"_944":3009,"_45":3019,"_888":3020,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"25\",\"yield_time_ms\":30000,\"max_tokens\":20000}","fc_0e577ca7e8f114c6016a7cd14f58748193a5d4e87932919a50",{"_893":867},{"_881":3022,"_860":861,"_883":867},{"_944":3023,"_45":-5,"_888":3024,"_204":-5,"_947":3025,"_96":949},"call_kRzhaAkJLybI0Es4xOcGPlOD",{"_893":867},"Script running with cell ID 25\nWall time 10.1 seconds\nOutput:\n",{"_899":3027,"_881":3028,"_860":861,"_883":867},1786564940767,{"_923":3029,"_925":3030,"_927":3031,"_929":930,"_865":3032,"_932":35,"_45":3033,"_934":3034,"_936":937,"_874":117,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 format\n> prettier --write .\n\n.agents/plugins/api_marketplace.json 75ms (unchanged)\n.agents/plugins/marketplace.json 6ms (unchanged)\n.agents/skills/access/agents/openai.yaml 10ms (unchanged)\n.agents/skills/access/SKILL.md 65ms 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13ms (unchanged)\ntests/ui-tools-task-directory.spec.ts 11ms (unchanged)\ntests/ui-tools.spec.ts 1601ms (unchanged)\ntests/ui-universal-search.spec.ts 86ms (unchanged)\ntests/ui-v2-announcements.dom.test.tsx 53ms (unchanged)\ntests/ui-v2-answer-safety.dom.test.tsx 102ms (unchanged)\ntests/ui-v2-components.dom.test.tsx 274ms (unchanged)\ntests/ui-v2-form-field.dom.test.tsx 28ms (unchanged)\ntests/ui-visual-artifacts.spec.ts 6ms (unchanged)\ntests/ui-visual-baseline.spec.ts 22ms (unchanged)\ntests/universal-search-owner.live.test.ts 21ms (unchanged)\ntests/universal-search-stream.test.ts 36ms (unchanged)\ntests/universal-search.test.ts 134ms (unchanged)\ntests/unknown-status-derivation.test.ts 18ms (unchanged)\ntests/upload-admission.test.ts 9ms (unchanged)\ntests/upload-duplicate-cleanup-ledger.test.ts 3ms (unchanged)\ntests/upload-ingress-limits.test.ts 5ms (unchanged)\ntests/upload-outcome.test.ts 7ms (unchanged)\ntests/upload-size-contract.test.ts 3ms (unchanged)\ntests/upload-size-precheck.dom.test.tsx 23ms (unchanged)\ntests/upload-structure.test.ts 23ms (unchanged)\ntests/use-answer-thread-bootstrap.test.ts 6ms (unchanged)\ntests/use-deferred-registry-search.dom.test.tsx 8ms (unchanged)\ntests/use-differential-search.dom.test.tsx 60ms (unchanged)\ntests/use-event-callback.dom.test.tsx 8ms (unchanged)\ntests/use-hide-on-scroll.dom.test.tsx 8ms (unchanged)\ntests/use-hide-on-scroll.test.ts 46ms (unchanged)\ntests/use-universal-search-stream.dom.test.tsx 22ms (unchanged)\ntests/use-viewer-gestures.dom.test.tsx 34ms (unchanged)\ntests/verify-phone-chrome.test.ts 34ms (unchanged)\ntests/verify-pr-local.test.ts 15ms (unchanged)\ntests/viewer-zoom.test.ts 4ms (unchanged)\ntests/visual-evidence-tabs.dom.test.tsx 27ms (unchanged)\ntests/visual-intelligence.test.ts 41ms (unchanged)\ntests/ward-output.test.ts 73ms (unchanged)\ntests/webhooks-chat-notify.test.ts 9ms (unchanged)\ntests/webhooks-railway-route.test.ts 9ms (unchanged)\ntests/webhooks-secret-auth.test.ts 8ms (unchanged)\ntests/webhooks-supabase-document-change-route.test.ts 19ms (unchanged)\ntests/worker-behavior.test.ts 5ms (unchanged)\ntests/worker-bundle.test.ts 9ms (unchanged)\ntests/worker-observability.test.ts 5ms (unchanged)\ntests/worker-python-lock.test.ts 3ms (unchanged)\ntests/worker-run-loop.test.ts 15ms (unchanged)\ntests/worker-runtime-control.test.ts 6ms (unchanged)\ntests/worker-runtime-validation.test.ts 8ms (unchanged)\ntests/worker-safe-logging.test.ts 4ms (unchanged)\ntests/worker-visual-capture.test.ts 8ms (unchanged)\ntests/xlsx-extraction-budget.test.ts 21ms (unchanged)\ntests/yaml-contract.test.ts 4ms (unchanged)\ntsconfig.json 2ms (unchanged)\ntsconfig.typecheck.json 1ms (unchanged)\nvitest.config.mts 6ms (unchanged)\nworker/assertion-tagging.ts 13ms (unchanged)\nworker/behavior.ts 5ms (unchanged)\nworker/embedding-fields.ts 20ms (unchanged)\nworker/index.ts 5ms (unchanged)\nworker/main.ts 432ms (unchanged)\nworker/observability.ts 9ms (unchanged)\nworker/prerequisites.ts 14ms (unchanged)\nworker/python/fixtures/README.md 46ms (unchanged)\nworker/run-loop.ts 18ms (unchanged)\nworker/runtime-control.ts 14ms (unchanged)\nworker/table-facts.ts 40ms (unchanged)\nworker/types.ts 2ms (unchanged)\nworker/validate-runtime.ts 26ms (unchanged)\n","/bin/bash -lc 'git diff --stat && git diff --check && npm run format'",[3035],116219,"exec-0b1b2d02-4655-4772-9f10-dcf0fc7d7e9b","11713",{"_925":3036,"_96":941},"git diff --stat && git diff --check && npm run format",{"_881":3038,"_860":861,"_883":867},{"_944":3023,"_45":3039,"_972":3040,"_888":3041,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd1424508819380f45ec1f8bb0fda","const r = await tools.write_stdin({session_id:33253,chars:\"\",yield_time_ms:30000,max_output_tokens:20000});\ntext(r.output);\n",{"_893":867},{"_881":3043,"_860":861,"_883":867},{"_944":3044,"_45":-5,"_888":3045,"_204":-5,"_947":3046,"_96":949},"call_2wUGwtY92M4GF2kc2082hTbN",{"_893":867},{"_355":3047,"_951":-5},[3048,3049,3050],{"_49":3052,"_96":955},{"_49":341,"_96":955},{"_49":3051,"_96":955},"SESSION_ID=33253","Script completed\nWall time 1.3 seconds\nOutput:\n",{"_881":3054,"_860":861,"_883":867},{"_944":3044,"_45":3055,"_972":3056,"_888":3057,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd13b6ed881938b1a44037f622613","const r = await tools.exec_command({cmd:\"npm run verify:pr-local\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":1000,\"max_output_tokens\":12000});\ntext(r.output); if (r.session_id) text(`SESSION_ID=${r.session_id}`);\n",{"_893":867},{"_881":3059,"_860":861,"_883":867},{"_884":-5,"_905":3060,"_45":3061,"_888":3062,"_909":3063,"_96":911},"gAAAAABqfNE7QecleMpZ3ZT7chwMzrpaE57CayEAuIWpPycLIqbdsHeL-kL5T2S1IYKc94wiJvcSV5JNJGzecd9m77M4VO02-DIiq6v8aoarhjA4iUJQSzNy0CL8ib79NcMI3dIaRCaRR53MiThYGkjr2lCAUrQaypzCVwMb3nXCsMx2S8LsEqGpUG9HT7BcTaLdBjhw66sOEEsJa6XtHpBRINWFFBMkzZPZRUda4em7HKLrtjJIIlfQmc_jdpQnmJJNRPvnlYbq8X4kmzGx980SpY3cYFI8ty6XGc6iKnjHj8HQglvDa46OB7LdFh-MNWSdd8c4rVK1eFwSpFt99GDqkb2hzc3AbWR8a_d1Rlpgdz4ETxWiicK8lPjUIenLxWlZIZNBcevTy0pCLjW5gJn2LZFy4Ni2wsIzTvFCZAfRr1q3S4OkNl32KWfnj4cCbFJ9mrtGV7lsm6Sh0IBv9OKFkuIVBoRhjKiqNoJCWcEMdf6PXxv9Bx0ojnKtt4Omy3UBu-COkkbxuDVTeFlhbw6mPtUU1ZsOPSEbABVvCK7dTGDiFqUxW0Ul48tdIAc8Rd3oHEF7dIZkXg_9Ri_BdmiGaLjnp-shWRns0LPUYXOd9pHb86wWvDuk_0REM9mJvbpv8G0qx5M7nAp2Cc6J8rVKloNBnxMnTa9fNwVO5R8Byi9TjgL8vwsgVvT-73NtEDxsh8ZJLSAe4XxH1HoWe9f9Lp88A_RU-SG_c2Xn8p1zO1yVztawAenklcnsk8PUb4dvC03jYuGRgQvnSzXt7nhTTtSgp5r7265Kxl5AFAFqf0Q2iCgXfZ8Nj6WxZWAJbJA-HCHZbd3wsp0GFuaNBfc6i1R53zIPVx1iROw478OCkW8dNmguZpwPUyKxtPjnZ6PmjulI3y7-VWMYp_ARyYEyBL31qGpDg7UntAPAUSesOXDlmd_VrxQeho_7KkMFFuBsxDXHve0IGaXSvOFcU9I3O-VdAK-8DPdK32ZIxjlWC9ofVHaUcOWSHRL4y3VabmGsnpYy2BCxrRK1DyDDb-zXXgeTUoF_VrjEExKjPSsG8YZhl4gYBRz1iTomb_tF679xqMB2CarIah7taFi2YPl7YmDBZyC4WINVCD5-NwAe7MVjCNK8SGoBnJlrc8Ll0kR7xpXnGlv06CvDRKquPO9yKhL9d5DrOSiYGKX7mik1_XC8y9LlVPrm9Wt5M8HPxzsD4x8lYe38K4bbwR3pVYFGGjMn5HAs9kF3q3AfFx1a5UfhEulTmvZ1pzDRnqa6tOOVzfg_Wy0OvTXJz6k0kUSxQ0m2q237m2Q1umBv0gfNBwvL5-ZLxl1zvYhRy6iMlcIwdE0ZlVBXQLVR2U9MTlWiwwlx3TczPFfNvWUvnPq8qELqla-hKs-R7-xsN84EiIElGSchk-8Vppj-_YxYCpZ0x_wtw1iXaw==","rs_0e577ca7e8f114c6016a7cd139e0f8819386f363e3308da980",{"_893":867},[3064],{"_49":3065,"_96":914},"**Planning verification of reverse unresolved counts**",{"_899":3067,"_881":3068,"_860":861,"_883":867},1786564923426,{"_884":3069,"_45":3061,"_909":3070,"_96":911},[],[3065],{"_899":3072,"_881":3073,"_860":861,"_883":867},1786564920914,{"_923":3074,"_925":3075,"_927":3076,"_929":930,"_865":3077,"_932":35,"_45":3078,"_934":3079,"_936":937,"_874":117,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 verify:pr-local\n> node scripts/verify-pr-local.mjs --dry-run --files data/medication-interaction-index.json,scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx,tests/medication-interactions.test.ts,tests/medication-interaction-lexicon-coverage.test.ts,tests/patient-profile-medications.dom.test.tsx,tests/patient-details-dock-action.dom.test.tsx\n\nChanged files: data/medication-interaction-index.json, scripts/build-medication-interaction-index.ts, src/components/clinical-dashboard/patient-details-dock-action.tsx, src/components/clinical-dashboard/patient-profile-panel.tsx, src/lib/medication-interaction-lexicon.ts, src/lib/medication-interactions.ts, tests/medication-interaction-lexicon-coverage.test.ts, tests/medication-interactions.test.ts, tests/patient-details-dock-action.dom.test.tsx, tests/patient-profile-medications.dom.test.tsx\n\nPR-local verification plan (dry run):\n- npm run check:runtime\n- npm run check:installed-lock-parity\n- npm run format:changed\n- npm run lint\n- npm run typecheck\n- npm run test\n- npm run build\n- npm run check:rag:fixtures\n- offline RAG production contracts skipped: no RAG-scoped changes (fixtures still selected)\n","/bin/bash -lc \"git status --short; git diff --check; git diff -- src/lib/medication-interactions.ts scripts/build-medication-interaction-index.ts src/components/clinical-dashboard/patient-details-dock-action.tsx src/components/clinical-dashboard/patient-profile-panel.tsx tests/medication-interactions.test.ts | sed -n '1,500p'; npm run verify:pr-local -- --dry-run --files data/medication-interaction-index.json,scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx,tests/medication-interactions.test.ts,tests/medication-interaction-lexicon-coverage.test.ts,tests/patient-profile-medications.dom.test.tsx,tests/patient-details-dock-action.dom.test.tsx\"",[3080],16062,"exec-8aabe074-efe0-4112-a541-d92a553a200b","42409",{"_925":3081,"_96":941},"git status --short; git diff --check; git diff -- src/lib/medication-interactions.ts scripts/build-medication-interaction-index.ts src/components/clinical-dashboard/patient-details-dock-action.tsx src/components/clinical-dashboard/patient-profile-panel.tsx tests/medication-interactions.test.ts | sed -n '1,500p'; npm run verify:pr-local -- --dry-run --files data/medication-interaction-index.json,scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx,tests/medication-interactions.test.ts,tests/medication-interaction-lexicon-coverage.test.ts,tests/patient-profile-medications.dom.test.tsx,tests/patient-details-dock-action.dom.test.tsx",{"_881":3083,"_860":861,"_883":867},{"_944":3084,"_45":-5,"_888":3085,"_947":3086,"_96":1055},"call_96HCGdZoweiicCgdwoODX0eB",{"_893":867},{"_355":3087,"_951":-5},[3088,3089],{"_49":3091,"_96":955},{"_49":3090,"_96":955}," M data/medication-interaction-index.json\n M scripts/build-medication-interaction-index.ts\n M src/components/clinical-dashboard/patient-details-dock-action.tsx\n M src/components/clinical-dashboard/patient-profile-panel.tsx\n M src/lib/medication-interaction-lexicon.ts\n M src/lib/medication-interactions.ts\n M tests/medication-interaction-lexicon-coverage.test.ts\n M tests/medication-interactions.test.ts\n M tests/patient-details-dock-action.dom.test.tsx\n M tests/patient-profile-medications.dom.test.tsx\ndiff --git a/scripts/build-medication-interaction-index.ts b/scripts/build-medication-interaction-index.ts\nindex f657fd5..e8e1c72 100644\n--- a/scripts/build-medication-interaction-index.ts\n+++ b/scripts/build-medication-interaction-index.ts\n@@ -125,7 +125,9 @@ function mentions(haystack: string, needle: string): boolean {\n }\n \n /**\n- * The counterparty segment is the FIRST sentence after the severity token.\n+ * Counterparty clauses after the severity token, excluding explicit mitigation\n+ * advice. Interaction rows regularly name additional mechanisms in later\n+ * sentences, so truncating at sentence one creates false negatives.\n *\n * This is deliberate and load-bearing. Scanning the whole row over-matches:\n * \"HIGH — NSAIDs and Aspirin. SSRIs deplete platelet serotonin … Cover with PPI\n@@ -137,8 +139,10 @@ function counterpartySegment(value: string): { severityToken: string | null; seg\n const match = SEVERITY_PATTERN.exec(value);\n const severityToken = match ? match[1].trim() : null;\n const body = (match ? match[2] : value).replace(/\\*\\*/g, \"\").trim();\n- const [first = \"\"] = body.split(/(?<=[.;])\\s+/);\n- return { severityToken, segment: first };\n+ const clauses = body.split(/(?<=[.;])\\s+/).filter((clause) => {\n+ return !/^(?:cover|monitor|consider|check|use|avoid|prefer|give|dose|reduce|increase)\\b/i.test(clause);\n+ });\n+ return { severityToken, segment: clauses.join(\" \") };\n }\n \n function main(): void {\n@@ -149,7 +153,7 @@ function main(): void {\n // Pre-resolve every catalogue term once.\n const termSlugs = new Map();\n for (const term of INTERACTION_LEXICON) {\n- if (term.kind === \"catalogue\" && term.select) {\n+ if (term.select) {\n termSlugs.set(term.id, selectCatalogueSlugs(term.select, records));\n }\n }\n@@ -228,11 +232,8 @@ function main(): void {\n // catalogue targets, or a known external/non-drug entity. A bare\n // mechanism class (\"CYP3A4 inhibitors\") with no named example is NOT\n // resolved: it could include catalogue drugs we have not enumerated.\n- const onlyMechanism =\n- termIds.size > 0 &&\n- counterparties.size === 0 &&\n- Array.from(termIds).every((id) => termKind(id) === \"mechanism\");\n- const resolved = sawClassifiableTerm && !onlyMechanism;\n+ const hasUnresolvedMechanism = Array.from(termIds).some((id) => termIsIncomplete(id));\n+ const resolved = sawClassifiableTerm && !hasUnresolvedMechanism;\n \n if (resolved) resolvedRows += 1;\n else unresolvedRows += 1;\n@@ -254,12 +255,13 @@ function main(): void {\n }\n }\n \n- function termKind(id: string): string {\n- return INTERACTION_LEXICON.find((term) => term.id === id)?.kind ?? \"mechanism\";\n+ function termIsIncomplete(id: string): boolean {\n+ const term = INTERACTION_LEXICON.find((candidate) => candidate.id === id);\n+ return !term || term.kind === \"mechanism\" || term.incompleteEnumeration === true;\n }\n \n function addTermTargets(term: LexiconTerm, into: Map, sourceSlug: string): void {\n- if (term.kind !== \"catalogue\") return;\n+ if (!term.select) return;\n for (const slug of termSlugs.get(term.id) ?? []) {\n // A drug is never its own counterparty. Ibuprofen's own row says \"NSAIDs\",\n // and the class resolves to every NSAID including ibuprofen — which would\n@@ -290,7 +292,13 @@ function main(): void {\n \n if (checkOnly) {\n const current = readFileSync(outputPath, \"utf8\");\n- if (current !== serialised) {\n+ let currentIndex: unknown;\n+ try {\n+ currentIndex = JSON.parse(current);\n+ } catch {\n+ currentIndex = null;\n+ }\n+ if (JSON.stringify(currentIndex) !== JSON.stringify(index)) {\n console.error(\n `[medication-interactions] ${OUTPUT_PATH} is stale.\\n` +\n \"Run `npm run medications:interactions` and commit the result.\",\ndiff --git a/src/components/clinical-dashboard/patient-details-dock-action.tsx b/src/components/clinical-dashboard/patient-details-dock-action.tsx\nindex edd3781..15b03cc 100644\n--- a/src/components/clinical-dashboard/patient-details-dock-action.tsx\n+++ b/src/components/clinical-dashboard/patient-details-dock-action.tsx\n@@ -32,18 +32,27 @@ export function PatientDetailsDockAction() {\n \n useEffect(() => {\n const phoneMediaQuery = window.matchMedia(\"(max-width: 639px)\");\n+ let observer: MutationObserver | null = null;\n const sync = () => {\n- setHost(phoneMediaQuery.matches ? document.getElementById(patientDetailsAddonSlotId) : null);\n+ if (!phoneMediaQuery.matches) {\n+ observer?.disconnect();\n+ observer = null;\n+ setHost(null);\n+ return;\n+ }\n+ setHost(document.getElementById(patientDetailsAddonSlotId));\n+ if (!observer) {\n+ observer = new MutationObserver(sync);\n+ observer.observe(document.body, { childList: true, subtree: true });\n+ }\n };\n sync();\n phoneMediaQuery.addEventListener(\"change\", sync);\n // The dock (and therefore the slot) mounts and unmounts with the composer,\n // so watch for it rather than assuming it exists on first paint.\n- const observer = new MutationObserver(sync);\n- observer.observe(document.body, { childList: true, subtree: true });\n return () => {\n phoneMediaQuery.removeEventListener(\"change\", sync);\n- observer.disconnect();\n+ observer?.disconnect();\n };\n }, []);\n \ndiff --git a/src/components/clinical-dashboard/patient-profile-panel.tsx b/src/components/clinical-dashboard/patient-profile-panel.tsx\nindex 3d64755..a47325d 100644\n--- a/src/components/clinical-dashboard/patient-profile-panel.tsx\n+++ b/src/components/clinical-dashboard/patient-profile-panel.tsx\n@@ -1,7 +1,7 @@\n \"use client\";\n \n import { Eraser, Plus, UserRound, X } from \"lucide-react\";\n-import { useId, useState } from \"react\";\n+import { useEffect, useId, useState } from \"react\";\n \n import { usePatientProfile } from \"@/components/clinical-dashboard/patient-profile-context\";\n import { SegmentedControl } from \"@/components/ui/segmented-control\";\n@@ -127,11 +127,9 @@ function MedicationPicker({\n const listId = useId();\n \n // Clearing the profile should empty the search box too.\n- const [syncedNonce, setSyncedNonce] = useState(resetNonce);\n- if (syncedNonce !== resetNonce) {\n- setSyncedNonce(resetNonce);\n+ useEffect(() => {\n setTerm(\"\");\n- }\n+ }, [resetNonce]);\n \n const options = catalogueMedicationOptions();\n const selectedSet = new Set(selected);\ndiff --git a/src/lib/medication-interactions.ts b/src/lib/medication-interactions.ts\nindex e16e53d..eedab6c 100644\n--- a/src/lib/medication-interactions.ts\n+++ b/src/lib/medication-interactions.ts\n@@ -55,6 +55,8 @@ export type MedicationInteractionResult = {\n unresolvedRowCount: number;\n /** Total interaction rows the catalogue carries for this medication. */\n totalRowCount: number;\n+ /** False when the catalogue names the medication but the index has no entry. */\n+ dataAvailable: boolean;\n };\n \n type IndexRow = {\n@@ -169,8 +171,9 @@ export function evaluateMedicationInteractions(\n interactions: [],\n counts: { ...EMPTY_COUNTS },\n highestTone: null,\n- unresolvedRowCount: 0,\n+ unresolvedRowCount: 1,\n totalRowCount: 0,\n+ dataAvailable: false,\n };\n }\n \n@@ -178,21 +181,36 @@ export function evaluateMedicationInteractions(\n const interactions: MedicationInteraction[] = [];\n const sourceRows = record?.sections?.find((section) => section.type === \"inter\")?.rows ?? [];\n \n- for (const row of entry.rows) {\n- for (const counterpartySlug of row.counterparties) {\n- if (!patient.has(counterpartySlug)) continue;\n- const severity = normaliseSeverity(row.severity);\n- interactions.push({\n- id: `${slug}:${row.rowIndex}:${counterpartySlug}`,\n- counterpartySlug,\n- counterpartyName: medicationDisplayName(counterpartySlug),\n- matchedTerms: row.termIds,\n- severity,\n- tone: SEVERITY_TONE[severity],\n- kind: row.rowKey,\n- note: sourceRows[row.rowIndex]?.val ?? \"\",\n- });\n+ const addMatches = (\n+ sourceSlug: string,\n+ rows: IndexRow[],\n+ counterpartySlugs: ReadonlySet,\n+ reverse = false,\n+ ) => {\n+ for (const row of rows) {\n+ for (const matchedSlug of row.counterparties) {\n+ if (!counterpartySlugs.has(matchedSlug)) continue;\n+ const counterpartySlug = reverse ? sourceSlug : matchedSlug;\n+ const severity = normaliseSeverity(row.severity);\n+ interactions.push({\n+ id: `${sourceSlug}:${row.rowIndex}:${matchedSlug}`,\n+ counterpartySlug,\n+ counterpartyName: medicationDisplayName(counterpartySlug),\n+ matchedTerms: row.termIds,\n+ severity,\n+ tone: SEVERITY_TONE[severity],\n+ kind: row.rowKey,\n+ note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \"\") : \"\",\n+ });\n+ }\n }\n+ };\n+\n+ addMatches(slug, entry.rows, patient);\n+ for (const patientSlug of patient) {\n+ if (interactions.some((interaction) => interaction.counterpartySlug === patientSlug)) continue;\n+ const reverseEntry = INDEX.bySlug[patientSlug];\n+ if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]), true);\n }\n \n interactions.sort((a, b) => {\n@@ -212,6 +230,7 @@ export function evaluateMedicationInteractions(\n highestTone: interactions[0]?.tone ?? null,\n unresolvedRowCount: entry.unresolvedRowCount,\n totalRowCount: entry.rows.length,\n+ dataAvailable: true,\n };\n }\n \ndiff --git a/tests/medication-interactions.test.ts b/tests/medication-interactions.test.ts\nindex a3bb000..095af0f 100644\n--- a/tests/medication-interactions.test.ts\n+++ b/tests/medication-interactions.test.ts\n@@ -66,10 +66,40 @@ describe(\"evaluateMedicationInteractions\", () => {\n expect(result.totalRowCount).toBeGreaterThanOrEqual(result.unresolvedRowCount);\n });\n \n- it(\"returns an empty result for an unknown slug rather than throwing\", () => {\n+ it(\"matches methadone's later CNS-depressant clause against diazepam\", () => {\n+ const result = evaluateMedicationInteractions(\"methadone\", [\"diazepam\"]);\n+ expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n+ expect(result.highestTone).toBe(\"danger\");\n+ });\n+\n+ it(\"matches cetirizine's sedative mechanism but keeps the row incomplete\", () => {\n+ const result = evaluateMedicationInteractions(\"cetirizine\", [\"diazepam\"]);\n+ expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n+ expect(result.unresolvedRowCount).toBeGreaterThan(0);\n+ });\n+\n+ it(\"finds a reverse naltrexone edge when considering buprenorphine-naloxone\", () => {\n+ const result = evaluateMedicationInteractions(\"buprenorphine-naloxone\", [\"naltrexone\"]);\n+ expect(result.interactions.some((item) => item.counterpartySlug === \"naltrexone\")).toBe(true);\n+ expect(result.highestTone).toBe(\"danger\");\n+ });\n+\n+ it(\"treats missing index data as incomplete rather than green\", () => {\n const result = evaluateMedicationInteractions(\"not-a-real-drug\", [\"sertraline\"]);\n expect(result.interactions).toHaveLength(0);\n expect(result.totalRowCount).toBe(0);\n+ expect(result.dataAvailable).toBe(false);\n+ expect(result.unresolvedRowCount).toBe(1);\n+ expect(\n+ composeMedicationVerdict({\n+ considerationTone: null,\n+ considerationCount: 0,\n+ unassessedCount: 0,\n+ interactionTone: result.highestTone,\n+ interactionCount: 0,\n+ unresolvedRowCount: result.unresolvedRowCount,\n+ }).tone,\n+ ).toBe(\"neutral\");\n expect(interactionRowCount(\"not-a-real-drug\")).toBe(0);\n });\n \n\n> prompt-for-codex-medical-knowledge-base@0.1.0 verify:pr-local\n> node scripts/verify-pr-local.mjs --dry-run --files data/medication-interaction-index.json,scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx,tests/medication-interactions.test.ts,tests/medication-interaction-lexicon-coverage.test.ts,tests/patient-profile-medications.dom.test.tsx,tests/patient-details-dock-action.dom.test.tsx\n\nChanged files: data/medication-interaction-index.json, scripts/build-medication-interaction-index.ts, src/components/clinical-dashboard/patient-details-dock-action.tsx, src/components/clinical-dashboard/patient-profile-panel.tsx, src/lib/medication-interaction-lexicon.ts, src/lib/medication-interactions.ts, tests/medication-interaction-lexicon-coverage.test.ts, tests/medication-interactions.test.ts, tests/patient-details-dock-action.dom.test.tsx, tests/patient-profile-medications.dom.test.tsx\n\nPR-local verification plan (dry run):\n- npm run check:runtime\n- npm run check:installed-lock-parity\n- npm run format:changed\n- npm run lint\n- npm run typecheck\n- npm run test\n- npm run build\n- npm run check:rag:fixtures\n- offline RAG production contracts skipped: no RAG-scoped changes (fixtures still selected)\n","Script completed\nWall time 1.1 seconds\nOutput:\n",{"_881":3093,"_860":861,"_883":867},{"_1063":3094,"_944":3084,"_45":3095,"_888":3096,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"23\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd136f4048193ad4580130d1f9764",{"_893":867},{"_881":3098,"_860":861,"_883":867},{"_944":3099,"_45":-5,"_888":3100,"_204":-5,"_947":3101,"_96":949},"call_LtH8GMyr6QloBuu5NfCS1E6k",{"_893":867},"Script running with cell ID 23\nWall time 10.0 seconds\nOutput:\n",{"_881":3103,"_860":861,"_883":867},{"_944":3099,"_45":3104,"_972":3105,"_888":3106,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd11c6d78819394ef50f921df1ea2","const r = await tools.exec_command({cmd:\"git status --short; git diff --check; git diff -- src/lib/medication-interactions.ts scripts/build-medication-interaction-index.ts src/components/clinical-dashboard/patient-details-dock-action.tsx src/components/clinical-dashboard/patient-profile-panel.tsx tests/medication-interactions.test.ts | sed -n '1,500p'; npm run verify:pr-local -- --dry-run --files data/medication-interaction-index.json,scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx,tests/medication-interactions.test.ts,tests/medication-interaction-lexicon-coverage.test.ts,tests/patient-profile-medications.dom.test.tsx,tests/patient-details-dock-action.dom.test.tsx\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":3108,"_860":861,"_883":867},{"_884":-5,"_905":3109,"_45":3110,"_888":3111,"_909":3112,"_96":911},"gAAAAABqfNEc6S1dopkEyQqkubONwBuE16Dj2V7rd9aVFuG7GgmZ4J_yFiZ2DE8eSxkg6X1cX2zDTvNMh9qeJ-HykLngVry-uvIhKbeeGn580v6-bCmN2_bBW6i0EDJL4nGU-KYGa3ufweRHld12caPa5So9x7sYohNNRGKXRRTPFrjlUgnoSQ3RCr4Gayua2KgKVXfqBQ6yCzRglLWODiiET6HMVE5rQjQDmsCDDJtpnLKIGwehd1B3X-xBL7c5J0lQKBRkYS30Ys1H3X-tvqymykf4OAr--CmWl5XYTWOozOUBPzTDWkOjwSr8wkRm_noTN0Fu24gmbRJvxe4ngUxgLQqp1UuefP71e9CP5kUi0j8LVQQuVqvz8_9gg7utFGoSqd0gxUDX_0SU0GlmyJk6NM0huyU8KF_Cs2Wup_B3-qvo-cQisC-DgDacX-K5mUelxn12Yj2XraG39INa91wZJFC8BQwO0JYlnQZsKigM-sM6iGPyABOh4cX97CRilrQQtYHpHxGKb8yLJ1Fdk9GH5JWm4J-i_9sCBKxbGUT1qLOs-EgBlK5nYpWtwmfLwWKCbKjdQ42hJmikRPrP8lJB0rjigIQxhOqRiuASWVay6ytAd4XDfwtxDZ3HTfJ1bJ4wbYoYqwa1h-5KU3r167mymuxIuPYO60qHDXu5zKjJXW4UrrCaVVkkNe95wzGsKH94F3UdPFH7RZw56wcRkVXZ6Ho-HHcfJ0w6Be3PaWnQNRJ7gdt7b0Et-EWckECvJEXsqiCxZJhx6PEuWrh1CzHZbq79NKPPMIBkyUQh_OEqZ8bdaAh5jSyGvHubnKH-byvUJOrPj6z5kgb58sEKBqiHfyGGdsTjr1N0_Ua1iaM0SQsVNR8OvOh5aelz5KIdr6uqY7JEYnBLw8batzmtrDkDgDjIGNuewXB3XzfQMBGVjx_3hNlZcjgJOwFzCnJZhyoADUJEUNmp1TUIlMY4txjEF_cKHSMRm5VNGXhhE-IiDOpElFxcMtN0czjBeCD2znY_hsmBbe-eW7UC43fttKjI_oc0uDSyZkgK9IDwSnzyaceRyS8NNROROozj1r6qZlbvbvHCptM0","rs_0e577ca7e8f114c6016a7cd11b064c81939fa6bb9bed202d9d",{"_893":867},[3113],{"_49":3114,"_96":914},"**Verifying potential type issue**",{"_899":3116,"_881":3117,"_860":861,"_883":867},1786564892646,{"_884":3118,"_45":3110,"_909":3119,"_96":911},[],[3114],{"_899":3121,"_881":3122,"_860":861,"_883":867},1786564889997,{"_923":3123,"_925":3124,"_927":3125,"_929":930,"_865":3126,"_932":1740,"_45":3127,"_934":3128,"_936":937,"_874":966,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:medication-interactions\n> node scripts/run-tsx.mjs scripts/build-medication-interaction-index.ts --check\n\n[medication-interactions] data/medication-interaction-index.json is up to date (523 rows).\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 workflow:clinical-proof\n> node scripts/productivity-workflow.mjs clinical-proof --write-evidence --paths scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx\n\n[productivity-workflow] Unknown option: --paths\n","/bin/bash -lc 'npm run check:medication-interactions; npm run workflow:clinical-proof -- --write-evidence --paths scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx'",[3129],30752,"exec-460b9576-5f0e-412c-ba08-cdcc59b4f568","63174",{"_925":3130,"_96":941},"npm run check:medication-interactions; npm run workflow:clinical-proof -- --write-evidence --paths scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx",{"_881":3132,"_860":861,"_883":867},{"_944":3133,"_45":-5,"_888":3134,"_947":3135,"_96":1055},"call_amZZtcQemgTz4JEaaxsXVpyB",{"_893":867},{"_355":3136,"_951":-5},[3137,3138],{"_49":3140,"_96":955},{"_49":3139,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:medication-interactions\n> node scripts/run-tsx.mjs scripts/build-medication-interaction-index.ts --check\n\n[medication-interactions] data/medication-interaction-index.json is up to date (523 rows).\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 workflow:clinical-proof\n> node scripts/productivity-workflow.mjs clinical-proof --write-evidence --paths scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx\n\n","Script completed\nWall time 14.3 seconds\nOutput:\n",{"_881":3142,"_860":861,"_883":867},{"_1063":3143,"_944":3133,"_45":3144,"_888":3145,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"22\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd10a34ac819382e3bbd1e4a7a272",{"_893":867},{"_881":3147,"_860":861,"_883":867},{"_944":3148,"_45":-5,"_888":3149,"_204":-5,"_947":3150,"_96":949},"call_5KLQkK7cKKpu5tJ6tr283tQE",{"_893":867},"Script running with cell ID 22\nWall time 10.0 seconds\nOutput:\n",{"_881":3152,"_860":861,"_883":867},{"_944":3148,"_45":3153,"_972":3154,"_888":3155,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd0f908dc8193b8a1d672095c466c","const r = await tools.exec_command({cmd:\"npm run check:medication-interactions; npm run workflow:clinical-proof -- --write-evidence --paths scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/lib/medication-interactions.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":3157,"_860":861,"_883":867},{"_884":-5,"_905":3158,"_45":3159,"_888":3160,"_909":3161,"_96":911},"gAAAAABqfND5XynbOP90m06AqqMnEWUenuDN0Ww5OcHSckr1L1ym3zBEQrUZBRC2f2uUWFPP2dbsO1kTHo_IU0zlXVLjbU6NmqKNz4WRVBNQTriDjmlVFoTXir23OLmW6CYo9KuV__grsmbrl-J5oW9m81vgj6xbpwyyjAPjCau6S1HI1Wl7RIusBh9i2M3hSsrXkwuTaQXy02nGfXpqln_qNF1-8Qdwo0wUvXRgic2CjYzT5MJg6ULVM420On3fHr2SUR81P24b99GxvFLdQqwLpgPPVB6Fx05l3MnYUgX-5cndW7SDhNu43LCHUGgAKHKUmtOydC3is6ocbu38jk00sIoJ08sbhMOCxzQUL372LPqbrlAuQaZ8guu55liEDW08YmXVbYBbu9i3dsHR9o-l3EVMhIFwhjRxefjyTpz74vnxNoa0B_J-5SUNGO1Rwyi1wblzGJ1YPgd00RQDA08xxf9Lv5n4ZZQ_FMEmQxypICT4vnTQRefNjwLPMijaX-XQ1Ka6KpyX9ItgFPVmlNyGOUO-1WRJz4zeZnq573Y-Pz5xMSVyT-uf_zn7eJIQImHNv49nbmdeztbpcOw8FMS2jnaOFrEMWDwjJ4zUOJwZcV8p8YdPB-tGcdneBuB7RdfqVDYvzWf-I8VNSS0KHgpJoD-6xbwEYsE2BPCu8nNQuqocY_02NhKHWla_HF0eQGe4XJjW8WvS9nyS9eLoXcdlc6Bd2Ul5rdzO37W76U9UgADBqJjzbimuJnrYQjBsDN2PfjMO4se47qANnlVCKNH_7vwgnWrWxvWNhYrirW01FUHuu7GqYzqnKiFluaFLDpleNIfQhFP3m0oigXuWIV0eLSamr2SuvA2BXRbhik5pWsdf_geHrQkTsLAajSWrVmiOPC_cJnKOcBHeuxdrrNoJTZ5ngOd_OCordp4dcdAntL-Ykz0P--NO6Q59E9dbdZu4fa7MQ1br-AepWqumMIwNSabVmaieud3sET9EDl0PvH8TpWayx2g=","rs_0e577ca7e8f114c6016a7cd0f8a1e08193a8ddb28ea2032d2c",{"_893":867},[3162],{"_49":3163,"_96":914},"**Verifying formatting and proof stability**",{"_899":3165,"_881":3166,"_860":861,"_883":867},1786564857058,{"_884":3167,"_45":3159,"_909":3168,"_96":911},[],[3163],{"_881":3170,"_860":861,"_883":867},{"_944":3171,"_45":-5,"_888":3172,"_947":3173,"_96":1055},"call_P1Io6gJzu7jpmZEHsWGt8si7",{"_893":867},{"_355":3174,"_951":-5},[3175,3176],{"_49":2482,"_96":955},{"_49":3177,"_96":955}," data/medication-interaction-index.json | 3728 +++++++++++++++-----\n scripts/build-medication-interaction-index.ts | 34 +-\n .../patient-details-dock-action.tsx | 17 +-\n .../clinical-dashboard/patient-profile-panel.tsx | 8 +-\n src/lib/medication-interaction-lexicon.ts | 9 +-\n src/lib/medication-interactions.ts | 49 +-\n ...medication-interaction-lexicon-coverage.test.ts | 12 +-\n tests/medication-interactions.test.ts | 32 +-\n tests/patient-details-dock-action.dom.test.tsx | 2 +\n tests/patient-profile-medications.dom.test.tsx | 4 +-\n 10 files changed, 3024 insertions(+), 871 deletions(-)\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 format\n> prettier --write .\n\n.agents/plugins/api_marketplace.json 75ms (unchanged)\n.agents/plugins/marketplace.json 6ms (unchanged)\n.agents/skills/access/agents/openai.yaml 10ms (unchanged)\n.agents/skills/access/SKILL.md 65ms (unchanged)\n.agents/skills/api/agents/openai.yaml 4ms (unchanged)\n.agents/skills/api/SKILL.md 11ms (unchanged)\n.agents/skills/audit/agents/openai.yaml 4ms (unchanged)\n.agents/skills/audit/SKILL.md 20ms (unchanged)\n.agents/skills/catalog.json 7ms (unchanged)\n.agents/skills/clinical-change-proof/agents/openai.yaml 2ms (unchanged)\n.agents/skills/clinical-change-proof/SKILL.md 14ms (unchanged)\n.agents/skills/clinical/agents/openai.yaml 5ms (unchanged)\n.agents/skills/clinical/SKILL.md 18ms (unchanged)\n.agents/skills/data/agents/openai.yaml 2ms (unchanged)\n.agents/skills/data/SKILL.md 7ms (unchanged)\n.agents/skills/database-flightplan/agents/openai.yaml 18ms 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(unchanged)\ndocs/audit/audit-handover-2026-07-14.md 47ms (unchanged)\ndocs/audit/audit-remediation-plan-2026-07-14.md 80ms (unchanged)\ndocs/audit/capacity-review.md 23ms (unchanged)\ndocs/audit/cloud-connection-acceptance-2026-08-05.md 32ms (unchanged)\ndocs/audit/design-audit-2026-07-17.md 46ms (unchanged)\ndocs/audit/latency-audit-2026-07-28.md 156ms (unchanged)\ndocs/audit/live-design-interaction-audit-2026-08-06.md 102ms (unchanged)\ndocs/audit/performance-image-cwv-audit-2026-08-02.md 120ms (unchanged)\ndocs/audit/primary-checkout-reconciliation-2026-07-24.md 28ms (unchanged)\ndocs/audit/repo-audit-2026-07-01.md 93ms (unchanged)\ndocs/audit/repo-wide-review-remediation-plan-2026-07-23.md 30ms (unchanged)\ndocs/audit/repo-wide-review-sweep-2026-07-19.md 40ms (unchanged)\ndocs/audit/scale-readiness-review.md 39ms (unchanged)\ndocs/audit/tenancy-defense-in-depth-review.md 79ms (unchanged)\ndocs/audit/ux-accessibility-review-2026-07-07.md 92ms (unchanged)\ndocs/auth-connection-cap-runbook.md 28ms (unchanged)\ndocs/branch-cleanup-guide.md 19ms (unchanged)\ndocs/chunking-ocr-reindex-lever-finding-2026-07-08.md 15ms (unchanged)\ndocs/clinical-badge-system-guide.md 105ms (unchanged)\ndocs/clinical-chat-ui-component-map.md 69ms (unchanged)\ndocs/clinical-governance.md 18ms (unchanged)\ndocs/clinical-hazard-analysis.md 114ms (unchanged)\ndocs/codebase-index.md 117ms (unchanged)\n",{"_881":3179,"_860":861,"_883":867},{"_1063":3180,"_944":3171,"_45":3181,"_888":3182,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"21\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd0e4a4d08193afaf4454455166d4",{"_893":867},{"_881":3184,"_860":861,"_883":867},{"_944":3185,"_45":-5,"_888":3186,"_204":-5,"_947":3187,"_96":949},"call_aO7tZNS5BF1Zn3Vpc00EaCJt",{"_893":867},"Script running with cell ID 21\nWall time 10.0 seconds\nOutput:\n",{"_899":3189,"_881":3190,"_860":861,"_883":867},1786564829522,{"_923":3191,"_925":3192,"_927":3193,"_929":930,"_865":3194,"_932":35,"_45":3195,"_934":3196,"_936":937,"_874":117,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 medications:interactions\n> node scripts/run-tsx.mjs scripts/build-medication-interaction-index.ts\n\n[medication-interactions] wrote data/medication-interaction-index.json: 523 rows, 355 resolved, 168 unresolved, 149 medications carry an unresolved row.\n\n RUN v4.1.10 /workspace/Database\n\n························································\n\n Test Files 4 passed (4)\n Tests 56 passed (56)\n Start at 20:00:03\n Duration 12.75s (transform 10.91s, setup 1.03s, import 17.10s, tests 1.71s, environment 3.47s)\n\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 check:medication-interactions\n> node scripts/run-tsx.mjs scripts/build-medication-interaction-index.ts --check\n\n[medication-interactions] data/medication-interaction-index.json is up to date (523 rows).\n","/bin/bash -lc 'npm run medications:interactions && node scripts/run-vitest.mjs run tests/medication-interactions.test.ts tests/medication-interaction-lexicon-coverage.test.ts tests/patient-profile-medications.dom.test.tsx tests/patient-details-dock-action.dom.test.tsx --reporter=dot && npm run check:medication-interactions'",[3197],39872,"exec-4c6ad5a5-20ed-4ac4-87ca-ff9d6556a1ec","89129",{"_925":3198,"_96":941},"npm run medications:interactions && node scripts/run-vitest.mjs run tests/medication-interactions.test.ts tests/medication-interaction-lexicon-coverage.test.ts tests/patient-profile-medications.dom.test.tsx tests/patient-details-dock-action.dom.test.tsx --reporter=dot && npm run check:medication-interactions",{"_881":3200,"_860":861,"_883":867},{"_944":3185,"_45":3201,"_972":3202,"_888":3203,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd0d7bb888193b61f56142515bfbf","const r = await tools.exec_command({cmd:\"git diff --stat && git diff --check && npm run format\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":3205,"_860":861,"_883":867},{"_884":-5,"_905":3206,"_45":3207,"_888":3208,"_909":3209,"_96":911},"gAAAAABqfNDXOsYPEqdGLW-Ep4axVbPTQKh90G-UPx3JAj6bDzh12bbfjujgj9NPOYQwuM4_c-85I2YTt_2zDuKAl6g0YdKaibsSQ4XwJ41mxq2pNXRIIrSiqqOlv6zHVulu9P1t8YQavj7CmCDJkF0Gs-2JRLvs97-tERxqbpwosBmrqUOToET6gDIgwhJXp-53shclFhOY287RBR6Rs5RlSJmUiPQzRyaAyk1tfE9fgYFiPKGp9JGiao397Lwjdnza1V-zP9Vggp_OMH5RUQdINRr89k5uO3yvWzXM172U7ER2Lr29_YdhWyEr3yc5Mmhgic7MVwTWr9WhygEc6NxDEowyLH7EQJ2iSOQBmcDkmJLE2_nku_eT6Zw77S_a-lhH4j08lBHJp-_3VVnZqPJQNfXDdqZ59UW4m9z0QbqDH-OGjRRMTQp9_WRRtwKn5OtfBXredYDsTZJwFI1m6p62HHK_vA60664cctPHnnRAY_W9j60wT76IaB1iPjyuCrxMBHSA_Ciwzg8sDb4QI-BXL3m_vIwu1E2eJMDHweWk62yfphhDsNDA4KHCLzggvJ5-63oKvckMadq02K-GKsnmhm66eJ8rU0S3Kq7KsinoCnUwbCdAJHjouwj0Q8K75GL0hhxcItbkpjir5Vh2zCfLyzysD9NtZuCmudiDwQU67qE0dGcw1O8qzxHOlJeiG7v8R75xV39G_z4X7zmlSv3Oni8FNlVI-NYWfY9KMGXabscN2OqLsyR3WjW6l4jYJ2UT_VkMYxRYILzprMxMwIw27mIBuEH1DfCjtGwo3JbSH8_F987yljyv0vQKzMBCNqGJC6Lp2CCOOhrX_LEpPX-RUV78L8OksKonlxy5nTUhZkNzzb4YnxAGSwudYAouOVP7AHyTv4R4-dI4qFVliWbS3vGCpGS58MsoGGNsyKtkdPhPUiGsrtipGnSraI8gbmIT5c5Tw2zLDg1tq3nqYrUCVHtRnEgc44ApVO2uh6jjH4jL2kYG9xUVeNPpXtRILH3pRMepYAMO5jo6WYS22O15c6Q5ZEYIvwWTU28DjzDCM6AMj8YRtuWIAeeQtxDf2buIquRQAxQZZHrXzBGs1iRoWJe7zX7YHEUX1fhI5pqe9uKHuxp8dMBRwnwHgqPZoKyu7pNq5LUwd8Gi86qo46Ob79BTesml6a25UeW9QNca8vStaEb-rtN4D0UdxIE3yEj9pJb3EPNDF82yYx16tl4WcH3l2WWIXA==","rs_0e577ca7e8f114c6016a7cd0d64a78819384be7cf75efa0198",{"_893":867},[3210],{"_49":3211,"_96":914},"**Inspecting diff and formatting stability**",{"_899":3213,"_881":3214,"_860":861,"_883":867},1786564823746,{"_884":3215,"_45":3207,"_909":3216,"_96":911},[],[3211],{"_881":3218,"_860":861,"_883":867},{"_944":3219,"_45":-5,"_888":3220,"_947":3221,"_96":1055},"call_rdAeqvPDbxJgMW68QDg8XTYa",{"_893":867},{"_355":3222,"_951":-5},[3223,3224],{"_49":2886,"_96":955},{"_49":3225,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 medications:interactions\n> node scripts/run-tsx.mjs scripts/build-medication-interaction-index.ts\n\n[medication-interactions] wrote data/medication-interaction-index.json: 523 rows, 355 resolved, 168 unresolved, 149 medications carry an unresolved row.\n\n RUN v4.1.10 /workspace/Database\n\n························································\n\n Test Files 4 passed (4)\n Tests 56 passed (56)\n Start at 20:00:03\n Duration 12.75s (transform 10.91s, setup 1.03s, import 17.10s, tests 1.71s, environment 3.47s)\n\n",{"_881":3227,"_860":861,"_883":867},{"_1063":3228,"_944":3219,"_45":3229,"_888":3230,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"20\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd0c0fd7c8193848f8ad2a0e769fb",{"_893":867},{"_881":3232,"_860":861,"_883":867},{"_944":3233,"_45":-5,"_888":3234,"_204":-5,"_947":3235,"_96":949},"call_eNDauDY60yh1vqKqJoHJIuiR",{"_893":867},"Script running with cell ID 20\nWall time 10.0 seconds\nOutput:\n",{"_881":3237,"_860":861,"_883":867},{"_944":3233,"_45":3238,"_972":3239,"_888":3240,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd0b360108193be937d70f365ebb3","const r = await tools.exec_command({cmd:\"npm run medications:interactions && node scripts/run-vitest.mjs run tests/medication-interactions.test.ts tests/medication-interaction-lexicon-coverage.test.ts tests/patient-profile-medications.dom.test.tsx tests/patient-details-dock-action.dom.test.tsx --reporter=dot && npm run check:medication-interactions\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":3242,"_860":861,"_883":867},{"_944":3243,"_45":-5,"_888":3244,"_204":-5,"_947":3245,"_96":949},"call_Gw18kHWkHlUZb9KgnMbB3CrS",{"_893":867},{"_355":3246,"_951":-5},[3247,3248],{"_49":2768,"_96":955},{"_49":1103,"_96":955},{"_899":3250,"_881":3251,"_860":861,"_883":867},1786564785848,{"_1107":3252,"_45":3253,"_874":117,"_96":1110},[3254],"exec-734cca09-74ec-420b-8602-65b6d3a091a5",{"_366":3255,"_9":3256,"_173":3257},"@@ -128,5 +128,9 @@\n \n- it(\"never resolves to a catalogue medication\", () => {\n+ it(\"only permits the explicitly partial CNS mechanism selector\", () => {\n for (const item of nonMatching) {\n- expect(item.select, `${item.id} must not carry a catalogue selector`).toBeUndefined();\n+ if (item.id === \"cns-depressants\") {\n+ expect(item.select?.classes).toEqual([\"Benzodiazepine\"]);\n+ } else {\n+ expect(item.select, `${item.id} must not carry a catalogue selector`).toBeUndefined();\n+ }\n }\n",{"_1115":-5,"_96":1116},"/workspace/Database/tests/medication-interaction-lexicon-coverage.test.ts",{"_881":3259,"_860":861,"_883":867},{"_944":3243,"_45":3260,"_972":3261,"_888":3262,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd0ae58708193b9efc98944f3a703","const patch = \"*** Begin Patch\\n*** Update File: /workspace/Database/tests/medication-interaction-lexicon-coverage.test.ts\\n@@\\n- it(\\\"never resolves to a catalogue medication\\\", () => {\\n+ it(\\\"only permits the explicitly partial CNS mechanism selector\\\", () => {\\n for (const item of nonMatching) {\\n- expect(item.select, `${item.id} must not carry a catalogue selector`).toBeUndefined();\\n+ if (item.id === \\\"cns-depressants\\\") {\\n+ expect(item.select?.classes).toEqual([\\\"Benzodiazepine\\\"]);\\n+ } else {\\n+ expect(item.select, `${item.id} must not carry a catalogue selector`).toBeUndefined();\\n+ }\\n*** End Patch\";\ntext(await tools.apply_patch(patch));\n",{"_893":867},{"_881":3264,"_860":861,"_883":867},{"_884":-5,"_905":3265,"_45":3266,"_888":3267,"_909":3268,"_96":911},"gAAAAABqfNCuUYWl3E3zT6sNr_ygt9OeAb9wpoQ6FhMIcte_LP_JGe-9NvZbgyto5Krd79Thr75uk5IbyQv3T-q4obi3siVmO_MVxsmNQpdX84T8I8jgTIEb1slJ-D33V9jx2IX5Iq2SGOc8PN9nCPDsI9ZL86rI9NPtMXczRROp0GNsJ3SbbbAujBwXoNyS3zPmXkJMe01emMGRDnHYqfhpuj1oL5mnfC-wKrgK-gGSSRS4_cOfeKU2mbeUXk1anvtj7ThShyvQ6zyZsgPpllkr1eOpE_OvJ407nG_2hQHuXi4CkUdEOtLTy6A6X88xkxUb5Y0o-XAjyn_gcq0kKzlA2qmQa1j2rpJ-AfhSnB1sqV1GBH38JhH2vr3ONvzRyBMU1qbBtx-8uvQk9LJisPN2zrbRs59OIiOaHxJTx-u9xFLKcCtmfu9yzszZq0e5mSUTkH_7opHvCdfeQjXVwa_MeB5FszELqxv3dgsJznrSqN4VXU_dt9osHEzbS0twl1kDK8S4ZozY-fS1QaoU8imcQGpAx3c4pGHzZ_8nJTHosGsa3oo3MtRHA8g5KB2q_7X6oQ3nGCGFt9LMJezqXETMMfCTzNBLz1Fnty2MYPyLKBOyw01oTuJ73SUtid3T_4BnRkb7Sn0rhy7jwRUFtiU7sPBMw-xPxJe6QhZYKObLjW3s4_HosvCzfS5S_aVUyBI3BB0h2F3fkSBLg0iQCa8VqbwhrZYuhzxhtdj4PsXuUwD18_foJJmeb_iftIWTB9R4glZwrk3iauSk8vCuJZw62DzjO8Q-tJOEY_vyefsQyni1gEIfYd6eKiUcGLY-mJmc05s3TYm3c-BDmRc8knWfvLhLPVLWKn-DNR7qxmdNao5mOX7KPP73vzZjXDakq4VzlrXjc2rU_AZY5i_EnMetlMyQCU0hiqtQi6p4o3PyaJvLGcle7fBpjri6pKR7I5AnKsMUbywUec-iOAnxyJfNyUzHzNLcE4rUaOAe-gVL9XAIVIFr6XO2-4Sr0boSeBN5PjMAEKSP","rs_0e577ca7e8f114c6016a7cd0adf9bc8193b671836e2d0b6c9b",{"_893":867},[3269],{"_49":3270,"_96":914},"**Updating test descriptions for CNS assertions**",{"_899":3272,"_881":3273,"_860":861,"_883":867},1786564782399,{"_884":3274,"_45":3266,"_909":3275,"_96":911},[],[3270],{"_881":3277,"_860":861,"_883":867},{"_944":3278,"_45":-5,"_888":3279,"_204":-5,"_947":3280,"_96":949},"call_A2aeKAPzXzKy0Z6xJuT16CAN",{"_893":867},{"_355":3281,"_951":-5},[3282,3283],{"_49":3285,"_96":955},{"_49":3284,"_96":955}," it(\"prefers the specific class over the generic one\", () => {\n const thiazides = slugsFor(\"thiazide-diuretics\");\n const loops = slugsFor(\"loop-diuretics\");\n expect(thiazides.length).toBeGreaterThan(0);\n expect(loops.length).toBeGreaterThan(0);\n expect(thiazides.some((slug) => loops.includes(slug))).toBe(false);\n });\n});\n\ndescribe(\"non-drug and external terms\", () => {\n const nonMatching = INTERACTION_LEXICON.filter(\n (item) => item.kind === \"nonDrug\" || item.kind === \"external\" || item.kind === \"mechanism\",\n );\n\n it(\"never resolves to a catalogue medication\", () => {\n for (const item of nonMatching) {\n expect(item.select, `${item.id} must not carry a catalogue selector`).toBeUndefined();\n }\n });\n\n it(\"classifies alcohol, grapefruit and smoking as non-drug\", () => {\n for (const id of [\"alcohol\", \"grapefruit\", \"smoking\", \"acidic-drinks\"]) {\n expect(term(id).kind).toBe(\"nonDrug\");\n }\n });\n\n it(\"classifies bare CYP and P-gp classes as unenumerable mechanisms\", () => {\n for (const id of [\"cyp-inhibitors\", \"cyp-inducers\", \"pgp\", \"cns-depressants\"]) {\n expect(term(id).kind).toBe(\"mechanism\");\n }\n });\n\n it(\"produces no counterparties for a row whose only term is non-drug\", () => {\n // Clozapine's CRITICAL smoking row.\n const smokingRows = (index.bySlug.clozapine?.rows ?? []).filter((row) => row.termIds.includes(\"smoking\"));\n expect(smokingRows.length).toBeGreaterThan(0);\n","Script completed\nWall time 0.2 seconds\nOutput:\n",{"_899":3287,"_881":3288,"_860":861,"_883":867},1786564780228,{"_923":3284,"_925":3289,"_927":3290,"_929":930,"_865":35,"_932":35,"_45":3291,"_934":3292,"_936":937,"_874":117,"_96":938},"/bin/bash -lc \"sed -n '115,150p' tests/medication-interaction-lexicon-coverage.test.ts\"",[3293],"exec-baae3e26-5e20-4149-b4bb-9f8b72bbda63","17649",{"_925":3294,"_204":3295,"_173":3257,"_96":3296},"sed -n '115,150p' tests/medication-interaction-lexicon-coverage.test.ts","medication-interaction-lexicon-coverage.test.ts","read",{"_881":3298,"_860":861,"_883":867},{"_944":3278,"_45":3299,"_972":3300,"_888":3301,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd0a9b42c81939899f4096f1358bd","const r = await tools.exec_command({cmd:\"sed -n '115,150p' tests/medication-interaction-lexicon-coverage.test.ts\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":4000});\ntext(r.output);\n",{"_893":867},{"_881":3303,"_860":861,"_883":867},{"_884":-5,"_905":3304,"_45":3305,"_888":3306,"_909":3307,"_96":911},"gAAAAABqfNCppE8eAJQYTZDojNOKYy077L1HAgLBk1spK7ta9Gr2ylropnDVhEHoO7pyIUis39BnampWVm_ywd56RrUqadNFiGsT1b-AAQfodcKmmiU2qBeMfz7iL7_lQ53Bpf_3eBfe9tiYnQhAmlt-O3x8aBspF-nFRG92NmX8OUqp4unwqHmFxjWorqutiONfqESeUY-h_QbasUtiwnJRdXB_PB3_DpFZ6AKI-tR5kdg5voO3KSHkHrofSe251_Ir6Sc2HR7-HrLBgaPhMd6gdB41Tk6QKvKJBtXUyIDR4ZIu-4yXfA92R2bGbxHYFfuvlaWiC4fRgUwUG4zCleONaeEAz_oPvwVLKLQqt0ShqhQNBs78gMqFfaBTWDrVcN9ni7AH5KT7SvURr7Qfdla27W5xw9W4z9aM2oopMwFb-u2JpfOm3yZ28TX555H_bS6yCj2hA7G6-Eq0jvl91qOhxHL-NEYdd830xUa-WYCq7Ql5RvIfxas6nga5PQUNsiC7k1QCLC2u4A7gBTEpTzoSmf_3RW6r2-rozrJ9SO-r9v6N0sDR8Boxx5ycV2Shon_FeXjqxSPI3Gkwpmaw3poXJ43tyHhND-9towJ9mK8Rxifmb0R0_qLlduQJA86zrzte8fIKB1VVgFkNdTPE145kuR3DZzfnCTvQZYJ2Aiu79lOPSOtI99T1aqCvD-F68sGO1aqoJT49D_03vvymz4sp4QnlsBTvRPJ-FHRchCTCsxCIJdsff4yVaU612cHEcRa4VIzXLlPtRtoEw4AeF4zUmloNk4v8KgVA3dSzY3B1GDeiZWNXt5iCzKKXLRESM6UOORf80aIAgR3CjO2i4R_N7wxiFlMTNDPmMzS3jN6lvlMQ-wZeZUnM5GfTDtgtqzH2DjJpA9IKPwCtIl7IPFAjioAedBoNN0-FilMZystlEoIJtyACaY0NbbEP4tZCrmz4glg3GAaU7SLEkkojbAVLxtA3WZSC8wSEovQVIsOlGbE8jC1yBUblxozqrpwr3nLhOTGlyCWRRBspw51_PCS7SWigocY6G4LuPGSKrNqQCpS2gMTnlKs=","rs_0e577ca7e8f114c6016a7cd0a8bab08193b5bc6969bad24640",{"_893":867},[3308],{"_49":3309,"_96":914},"**Testing nonMatching asserts for CNS-only adjustment**",{"_899":3311,"_881":3312,"_860":861,"_883":867},1786564777746,{"_884":3313,"_45":3305,"_909":3314,"_96":911},[],[3309],{"_881":3316,"_860":861,"_883":867},{"_944":3317,"_45":-5,"_888":3318,"_204":-5,"_947":3319,"_96":949},"call_G3AWnGaoSAwKdcVxvybY30vP",{"_893":867},{"_355":3320,"_951":-5},[3321,3322],{"_49":2768,"_96":955},{"_49":1103,"_96":955},{"_899":3324,"_881":3325,"_860":861,"_883":867},1786564771237,{"_1107":3326,"_45":3327,"_874":117,"_96":1110},[3328],"exec-39b91b18-e8e6-48c9-bc84-fa004c7d0e26",{"_366":3329,"_9":3330,"_173":3331},"@@ -65,3 +65,3 @@\n kind: LexiconTermKind;\n- /** Required when `kind === \"catalogue\"`. */\n+ /** Required for catalogue terms; mechanisms may carry a conservative partial selector. */\n select?: CatalogueSelector;\n@@ -81,3 +81,3 @@\n surfaces: [\"benzodiazepines\", \"benzodiazepine\", \"benzos\", \"benzo\"],\n- kind: \"mechanism\",\n+ kind: \"catalogue\",\n // `class`, NOT a subclass substring — see the Dibenzodiazepine trap above.\n@@ -356,3 +356,3 @@\n surfaces: [\"cns depressants\", \"cns depressant\", \"sedatives\", \"sedative\", \"sedating drugs\"],\n- kind: \"catalogue\",\n+ kind: \"mechanism\",\n select: { classes: [\"Benzodiazepine\"] },\n",{"_1115":-5,"_96":1116},"/workspace/Database/src/lib/medication-interaction-lexicon.ts",{"_881":3333,"_860":861,"_883":867},{"_944":3317,"_45":3334,"_972":3335,"_888":3336,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd0a18e008193895049d2871a1e37","const patch = \"*** Begin Patch\\n*** Update File: /workspace/Database/src/lib/medication-interaction-lexicon.ts\\n@@\\n- /** Required when `kind === \\\"catalogue\\\"`. */\\n+ /** Required for catalogue terms; mechanisms may carry a conservative partial selector. */\\n@@\\n- kind: \\\"mechanism\\\",\\n+ kind: \\\"catalogue\\\",\\n@@\\n {\\n id: \\\"cns-depressants\\\",\\n@@\\n- kind: \\\"catalogue\\\",\\n+ kind: \\\"mechanism\\\",\\n*** End Patch\";\ntext(await tools.apply_patch(patch));\n",{"_893":867},{"_881":3338,"_860":861,"_883":867},{"_884":-5,"_905":3339,"_45":3340,"_888":3341,"_909":3342,"_96":911},"gAAAAABqfNCh4bgcfsxlWxcBUaCr5IOw7Pzc3cUCzm8YnOddL2G5C7dhkUoQK93a6eXVk7Uh5yX4EmSbp2RwmQO3Y9FCe0zFSBrpyQ4c56Yh_DOY_lei0hr0nh9o7YDm3S8mxjgiodBQ_cZkQWJkh9DOYTr2T-p3AmNO87aWMbO0KSrF9MhHCHxc7c6FjUGYpZjhRVAFz-vNCumGFySg-mOcg-aOwQzfxosC-g7vGRJuQC66i5hohgyX4VX8sPQxgp583Wrnrv_XD295biCxXWnZukmJiW6GG5yDowTYGEZhPuwvIK5xYIikz3XkQDOqoe-oVvCv2uD8osUpZ8Vs9oBeSM1Ctim36NS18-HPDkoDZogNA1NGiduieDpERWyn4lCDPAc2PieuhMe835x2PiLyhbQES7wLk1qJYu2VotyuKWiI1TutDZN_ugMbKuoKIzPqDXkMzya2XIAe1MwASQl5qYDfxMALh-RRlbT9DB9fTUK7Mi3bE8qccly9giSLHj9fiRs3Cv_xqgwgn34k05x2zgbwkgwzYXdj1Zus_hYbNmuwo_cddUzWdDzoUvjdFeP3OiQMa0Vma_kH2mkJJ7h1Ccm_nNPdX9cJUHbPD53PL_n0QFFAkAtZArAb81nKr69ImfqK72mXvV1Hrn0EmWaS1yGr_O52toyPOtAlNE5gzstgGZz26Oq-zb1B5PihgBEJgDVahKhb1dyPN6aOWCqZNQ6FcL-Fto90iZHQWQMQIPNvwvW2o1Jxu2evtNf2QZmqXV0crw8_EeXxjrbZpQGiY2kukT8Sn4ykOHJelBmnYw59OmOk6o2hzL_oBsIZZadVMrKEnjMdcJWpiWRBY72DKpGfnsNJDqmvanBCdP2H66_ao2eE3nHNwJpJX5H2XHQ_pCm5lFeiHsxr-6NLptW78UFXYZFkIPR5ysMwV2MpPtoZwzO1UEnAMwisGVeb4unAFYm9tzQr2SqpQyIU0O-HNsP6lqHANnVMUepfi5toqmiRqWF7WcT01J-HD_4pJWDWGYiqO9K5va1uqa_7YVnJXtnQjVkHpZHCI2BNxMNYC_yyLI1nmow3-EN5oWPVwgZxX3z7QKMASPKzAZjA9paPexR7wNvqD8c3OS4mpalNgC92pYVauWeQ2UovXZagXSs6s1VAUaMP","rs_0e577ca7e8f114c6016a7cd09fc7d881938874995104124c1e",{"_893":867},[3343],{"_49":3344,"_96":914},"**Fixing CNS mechanism update**",{"_899":3346,"_881":3347,"_860":861,"_883":867},1786564769571,{"_884":3348,"_45":3340,"_909":3349,"_96":911},[],[3344],{"_899":3351,"_881":3352,"_860":861,"_883":867},1786564765891,{"_923":3353,"_925":3354,"_927":3355,"_929":930,"_865":3356,"_932":35,"_45":3357,"_934":3358,"_936":937,"_874":117,"_96":938},"{\n rows: [\n {\n rowKey: 'Pharmacodynamic',\n rowIndex: 0,\n severity: 'moderate',\n counterparties: [Array],\n termIds: [Array],\n resolved: true\n }\n ],\n unresolvedRowCount: 0\n}\n","/bin/bash -lc \"sed -n '55,82p' src/lib/medication-interaction-lexicon.ts; sed -n '345,365p' src/lib/medication-interaction-lexicon.ts; node - <<'NODE'\nconst x=require('./data/medication-interaction-index.json'); console.log(x.bySlug.cetirizine)\nNODE\"",[3359],2918,"exec-05a08079-ec45-49dc-919a-9e92acd0e6d8","39561",{"_925":3360,"_96":941},"sed -n '55,82p' src/lib/medication-interaction-lexicon.ts; sed -n '345,365p' src/lib/medication-interaction-lexicon.ts; node - <<'NODE'\nconst x=require('./data/medication-interaction-index.json'); console.log(x.bySlug.cetirizine)\nNODE",{"_881":3362,"_860":861,"_883":867},{"_944":3363,"_45":-5,"_888":3364,"_204":-5,"_947":3365,"_96":949},"call_V4JZynMXVmSMlP5eEaaHitkA",{"_893":867},{"_355":3366,"_951":-5},[3367,3368],{"_49":3370,"_96":955},{"_49":3369,"_96":955}," subclassIncludes?: string[];\n /** Removed after the selector runs — the trap guard. Always wins. */\n denySlugs?: string[];\n};\n\nexport type LexiconTerm = {\n /** Canonical id, used in the generated index and in test pins. */\n id: string;\n /** Surface forms found in the prose. Matched whole-word, case-insensitive. */\n surfaces: string[];\n kind: LexiconTermKind;\n /** Required when `kind === \"catalogue\"`. */\n select?: CatalogueSelector;\n /** Targets are useful, but the class is broader than the enumerated subset. */\n incompleteEnumeration?: boolean;\n /** Why this term is external/nonDrug/mechanism — kept for auditability. */\n note?: string;\n};\n\n// ---------------------------------------------------------------------------\n// Catalogue classes\n// ---------------------------------------------------------------------------\n\nconst CATALOGUE_TERMS: LexiconTerm[] = [\n {\n id: \"benzodiazepines\",\n surfaces: [\"benzodiazepines\", \"benzodiazepine\", \"benzos\", \"benzo\"],\n kind: \"mechanism\",\n id: \"cyp-substrates\",\n surfaces: [\"cyp substrates\", \"cyp2d6 substrates\", \"cyp3a4 substrates\", \"narrow therapeutic index drugs\"],\n kind: \"mechanism\",\n },\n {\n id: \"pgp\",\n surfaces: [\"p-gp\", \"p-gp inhibitors\", \"p-glycoprotein\", \"oatp\"],\n kind: \"mechanism\",\n },\n {\n id: \"cns-depressants\",\n surfaces: [\"cns depressants\", \"cns depressant\", \"sedatives\", \"sedative\", \"sedating drugs\"],\n kind: \"catalogue\",\n select: { classes: [\"Benzodiazepine\"] },\n note:\n \"Partially enumerated to known benzodiazepines, while remaining unresolved because \" +\n \"the surface also spans opioids, antihistamines, alcohol and more.\",\n },\n {\n id: \"qtc-prolonging\",\n surfaces: [\n{\n rows: [\n {\n rowKey: 'Pharmacodynamic',\n rowIndex: 0,\n severity: 'moderate',\n counterparties: [Array],\n termIds: [Array],\n resolved: true\n }\n ],\n unresolvedRowCount: 0\n}\n","Script completed\nWall time 3.0 seconds\nOutput:\n",{"_881":3372,"_860":861,"_883":867},{"_944":3363,"_45":3373,"_972":3374,"_888":3375,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd09840b48193a13ae12a37fb8916","const r = await tools.exec_command({cmd:\"sed -n '55,82p' src/lib/medication-interaction-lexicon.ts; sed -n '345,365p' src/lib/medication-interaction-lexicon.ts; node - <<'NODE'\\nconst x=require('./data/medication-interaction-index.json'); console.log(x.bySlug.cetirizine)\\nNODE\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":5000});\ntext(r.output);\n",{"_893":867},{"_881":3377,"_860":861,"_883":867},{"_884":-5,"_905":3378,"_45":3379,"_888":3380,"_909":3381,"_96":911},"gAAAAABqfNCYTiJYdlqS-KDgbtnTW_vksqrQ1rQX_VxVb1enPA7e69Vhwm0BdJUUCKYzZuc5Ssmyzv0DSCkE_F-vZXyDeOGOCLTX0ia36TFseNSpNYKqOJxMi8_GXYEqGkWOo9GUsgo-a6mFleVkodV8uGvUWf2gpz_jPBQGI9jMXW0T3mF2Hp83Uz20U37sXXY2MdZyiJm0641JB8LIrCKpSktdknSRAaeZbZDEeTy9EP17dN4JIpJpR6vLFBu6w54SZSWWL9mrrfVHJmPXZ5jGRoRjpGF_1HbxcNoKIcI7wPf79x4KgAcFpAUZq24vvIeviJMhKzKsWOtvGpahE3gsz3QlDpVVfGT7zTirvP_597f7YX0YWFdEqIq8FX2FIcwyQEZTDm3aTD0tKQKu0NhGZxu1HAHglf2xx8NDN8yh1RC0tdXIMT_lq7khfDUW5_v-INyahRnPuD9rXqDtEjT2RBKYULY5m3F-P560aLOduvOQ5CI_vDKD-CmlbjAutv7UKvPuktTpkJiFCyF1Bt0XXKglZV_xLJq5RjXteHxaMY_JkCVbegGdMP4uX-Capf0VzKW5tXxuIIsdx9AvUB52eaJRKbjx1pWGuOaDBkHqCDpE8BU7vj-1HgDpmng6srKTgcyOBP5bG4caVLO7ridq-4tNYIjsLm64q138Ct56RptvRMOlROUK8gyNZE8jWXxxUuivv63vOfDpD1OUG_1o3o5Ki9g-J0WH7IYHTA1ti49cvMhoPvid99YRPaFTh-lOxt3j3m4YRzTn0c9fCQe7IlWyw4kTtjgynSTjFYjiFa1GTvOWCmj4pszfA9VAGHOfUiXdIbtl-bkqIOs58bLDIMk1M6aqszgpSv1Gk61P4hsRL6FhwjeFt-L8jvTLl1G9A9bmCLkiAAngKgXPj3-MN79n1GsI09o6otO1xKTj2nyKAfh17AWunzTqy4lFlVR7HsLSdVPEXEcobQo-V8Zx9Q4zENvb4zD6cwMM_BWQUGH1I5UwGeRIjBJn-PRlHfN_F_qb7To48UfYMvF-NZs9-_b83irQM_NNuPN0dTfXDWasr97c9qE-hkxOR1Ntv9PqjiJFfY5A","rs_0e577ca7e8f114c6016a7cd096fc148193b6bc6a2ec322a3ee",{"_893":867},[3382],{"_49":3383,"_96":914},"**Inspecting incorrect patch classification**",{"_899":3385,"_881":3386,"_860":861,"_883":867},1786564760329,{"_884":3387,"_45":3379,"_909":3388,"_96":911},[],[3383],{"_899":3390,"_881":3391,"_860":861,"_883":867},1786564757575,{"_923":3392,"_925":3393,"_927":3394,"_929":930,"_865":3395,"_932":1740,"_45":3396,"_934":3397,"_936":937,"_874":966,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 medications:interactions\n> node scripts/run-tsx.mjs scripts/build-medication-interaction-index.ts\n\n[medication-interactions] wrote data/medication-interaction-index.json: 523 rows, 334 resolved, 189 unresolved, 170 medications carry an unresolved row.\n\n RUN v4.1.10 /workspace/Database\n\n····················x·······x·x···············x·········\n\n⎯⎯⎯⎯⎯⎯⎯ Failed Tests 4 ⎯⎯⎯⎯⎯⎯⎯\n\n FAIL |node| tests/medication-interaction-lexicon-coverage.test.ts > interaction lexicon coverage > does not regress the number of resolved rows\nAssertionError: expected 334 to be greater than or equal to 355\n ❯ tests/medication-interaction-lexicon-coverage.test.ts:57:38\n 55| // Mixed rows containing a still-unenumerated mechanism remain unr…\n 56| // 355 is the conservative baseline after that false-green fix.\n 57| expect(index.stats.resolvedRows).toBeGreaterThanOrEqual(355);\n | ^\n 58| expect(index.sourceRowCount).toBeGreaterThanOrEqual(523);\n 59| });\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[1/4]⎯\n\n FAIL |node| tests/medication-interaction-lexicon-coverage.test.ts > non-drug and external terms > never resolves to a catalogue medication\nAssertionError: benzodiazepines must not carry a catalogue selector: expected { classes: [ 'Benzodiazepine' ], …(1) } to be undefined\n\n- Expected:\nundefined\n\n+ Received:\n{\n \"classes\": [\n \"Benzodiazepine\",\n ],\n \"denySlugs\": [\n \"clozapine\",\n \"olanzapine-wafer-odt\",\n ],\n}\n\n ❯ tests/medication-interaction-lexicon-coverage.test.ts:131:77\n 129| it(\"never resolves to a catalogue medication\", () => {\n 130| for (const item of nonMatching) {\n 131| expect(item.select, `${item.id} must not carry a catalogue selec…\n | ^\n 132| }\n 133| });\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[2/4]⎯\n\n FAIL |node| tests/medication-interaction-lexicon-coverage.test.ts > non-drug and external terms > classifies bare CYP and P-gp classes as unenumerable mechanisms\nAssertionError: expected 'catalogue' to be 'mechanism' // Object.is equality\n\nExpected: \"mechanism\"\nReceived: \"catalogue\"\n\n ❯ tests/medication-interaction-lexicon-coverage.test.ts:143:29\n 141| it(\"classifies bare CYP and P-gp classes as unenumerable mechanisms\"…\n 142| for (const id of [\"cyp-inhibitors\", \"cyp-inducers\", \"pgp\", \"cns-de…\n 143| expect(term(id).kind).toBe(\"mechanism\");\n | ^\n 144| }\n 145| });\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[3/4]⎯\n\n FAIL |node| tests/medication-interactions.test.ts > evaluateMedicationInteractions > matches cetirizine's sedative mechanism but keeps the row incomplete\nAssertionError: expected 0 to be greater than 0\n ❯ tests/medication-interactions.test.ts:78:39\n 76| const result = evaluateMedicationInteractions(\"cetirizine\", [\"diaz…\n 77| expect(result.interactions.some((item) => item.counterpartySlug ==…\n 78| expect(result.unresolvedRowCount).toBeGreaterThan(0);\n | ^\n 79| });\n 80|\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[4/4]⎯\n\n\n Test Files 2 failed | 2 passed (4)\n Tests 4 failed | 52 passed (56)\n Start at 19:59:04\n Duration 12.93s (transform 11.05s, setup 1.23s, import 17.22s, tests 1.78s, environment 3.55s)\n\n","/bin/bash -lc 'npm run medications:interactions && node scripts/run-vitest.mjs run tests/medication-interactions.test.ts tests/medication-interaction-lexicon-coverage.test.ts tests/patient-profile-medications.dom.test.tsx tests/patient-details-dock-action.dom.test.tsx --reporter=dot'",[3398],29522,"exec-f7ca60df-3442-4006-89f6-d4ef9de4c134","20013",{"_925":3399,"_96":941},"npm run medications:interactions && node scripts/run-vitest.mjs run tests/medication-interactions.test.ts tests/medication-interaction-lexicon-coverage.test.ts tests/patient-profile-medications.dom.test.tsx tests/patient-details-dock-action.dom.test.tsx --reporter=dot",{"_881":3401,"_860":861,"_883":867},{"_944":3402,"_45":-5,"_888":3403,"_947":3404,"_96":1055},"call_qhhlQdVYS6nIMMgLdbfvp6zl",{"_893":867},{"_355":3405,"_951":-5},[3406,3407],{"_49":2180,"_96":955},{"_49":3392,"_96":955},{"_881":3409,"_860":861,"_883":867},{"_1063":3410,"_944":3402,"_45":3411,"_888":3412,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"15\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd0836b508193b6e982b30a118d64",{"_893":867},{"_881":3414,"_860":861,"_883":867},{"_944":3415,"_45":-5,"_888":3416,"_204":-5,"_947":3417,"_96":949},"call_2vp6G1u4ClB9HNL59dpam0Qa",{"_893":867},"Script running with cell ID 15\nWall time 10.0 seconds\nOutput:\n",{"_881":3419,"_860":861,"_883":867},{"_944":3415,"_45":3420,"_972":3421,"_888":3422,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd075be908193af2dffed04054c07","const r = await tools.exec_command({cmd:\"npm run medications:interactions && node scripts/run-vitest.mjs run tests/medication-interactions.test.ts tests/medication-interaction-lexicon-coverage.test.ts tests/patient-profile-medications.dom.test.tsx tests/patient-details-dock-action.dom.test.tsx --reporter=dot\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":3424,"_860":861,"_883":867},{"_884":-5,"_905":3425,"_45":3426,"_888":3427,"_909":3428,"_96":911},"gAAAAABqfNB1DVrCaMDSuHCS39DurQwN1f4svjCeDuFQ2p2QNP5h890H_7_0rT6QtUS6-xUaMDHVdqiby92IESFPu0OAYwal1zjny2JEBFV9e7m30ny7MchuM6UVlLG6OPJj-Wn5ssjDjgBOR8K6T4BDnUU8ggIREo3h6RAzvc0HlALbjEX4FT0E-4bLs6O8lIU5dP0WXUIHMBqP6zwAGm0l16TolBnUqtKFMIX2G_vCPSzQtgmfaYqwPpVjYoD-j9Hz23zWUOtzU7iQKyGKfdJLITUiuhEmdQCA0lt_BQz2wICNlsCJlKNcg1loZ2uNGPZb5LUrdY1__1MgrTsmivAccJGP9Qxj8tC8wdKd_eQgR6sXPr83UO80rohpWKCQuE3M2U-7KFF-_F84iRQVB31n0W_uMfYCvVqh-oLfRjc6uunn7DM8o0Co30U-RsKVrVRrJics4YgkXasOpMdrz-VhlMNWddL_oKy13REvbAuTh1gPJhg9sOJAL6LkGQZGPEc1KwbqOSWCqi7Yn0-2H_0NHr_NkUnQnQbhpiDxIJHHKDktc44N_CfKxIuN4XlLmE9OskluacaPvDyMaWwiEAW_p3Zp1R4oxgDOteaL3ddhA_8AlxQbevU1HrnGudOKUq-ISKswcVYgKgfRgUHn3yFZnt2GgxyRdPfLPkWWmgvh7MYmlhBGSWKnXqIYoa9AWOEfinnCdvrFQmKuypsJq-eDcCYZxS6PAiQgJyCzUDX22wAVCfJqn94Ka8sSB5nQdBE0nNNer_8cq0LqonhD-XUQMGfpRiyMYKiGGI5pr13j_3P8UqTDz4SRROGBlDvF5LDBlduy-bk-R5gp851jLnDZPTAvytulB1K4XypoTFk0UIUaRIExc7b13TuFnCrntJuMhDoREEtb7DzTUjeMRw1rkk_mqHiTipsU9Y-T2-UoNfoorCbkhNAswNaAbJFTRkyt1hNNtWlJA6WedhZbJLMUfEE7NdCt10RlurfOdj6a_oZ0iqquIe2P4alPeU96NbDHpBUTlSBMIOZm6P0zSdGY28XcaP1Egw==","rs_0e577ca7e8f114c6016a7cd07520748193bd969ec42d2e5034",{"_893":867},[3429],{"_49":3430,"_96":914},"**Removing unused incomplete property**",{"_899":3432,"_881":3433,"_860":861,"_883":867},1786564725758,{"_884":3434,"_45":3426,"_909":3435,"_96":911},[],[3430],{"_881":3437,"_860":861,"_883":867},{"_944":3438,"_45":-5,"_888":3439,"_204":-5,"_947":3440,"_96":949},"call_rdtZwMiX3g5XKDgmgVFD8EAR",{"_893":867},{"_355":3441,"_951":-5},[3442,3443],{"_49":3285,"_96":955},{"_49":1103,"_96":955},{"_899":3445,"_881":3446,"_860":861,"_883":867},1786564723524,{"_1107":3447,"_45":3448,"_874":117,"_96":1110},[3449,3450,3451,3452],"exec-8f3db862-7084-43e1-af4b-926f9069adce",{"_366":3460,"_9":3461,"_173":1114},{"_366":3458,"_9":3459,"_173":3331},{"_366":3455,"_9":3456,"_173":3457},{"_366":3453,"_9":3454,"_173":3257},"@@ -54,3 +54,5 @@\n // without recording why in the PR.\n- expect(index.stats.resolvedRows).toBeGreaterThanOrEqual(400);\n+ // Mixed rows containing a still-unenumerated mechanism remain unresolved;\n+ // 355 is the conservative baseline after that false-green fix.\n+ expect(index.stats.resolvedRows).toBeGreaterThanOrEqual(355);\n expect(index.sourceRowCount).toBeGreaterThanOrEqual(523);\n",{"_1115":-5,"_96":1116},"@@ -210,2 +210,3 @@\n for (const patientSlug of patient) {\n+ if (interactions.some((interaction) => interaction.counterpartySlug === patientSlug)) continue;\n const reverseEntry = INDEX.bySlug[patientSlug];\n",{"_1115":-5,"_96":1116},"/workspace/Database/src/lib/medication-interactions.ts","@@ -81,3 +81,3 @@\n surfaces: [\"benzodiazepines\", \"benzodiazepine\", \"benzos\", \"benzo\"],\n- kind: \"catalogue\",\n+ kind: \"mechanism\",\n // `class`, NOT a subclass substring — see the Dibenzodiazepine trap above.\n@@ -358,3 +358,2 @@\n select: { classes: [\"Benzodiazepine\"] },\n- incompleteEnumeration: true,\n note:\n",{"_1115":-5,"_96":1116},"@@ -155,3 +155,3 @@\n for (const term of INTERACTION_LEXICON) {\n- if (term.kind === \"catalogue\" && term.select) {\n+ if (term.select) {\n termSlugs.set(term.id, selectCatalogueSlugs(term.select, records));\n@@ -263,3 +263,3 @@\n function addTermTargets(term: LexiconTerm, into: Map, sourceSlug: string): void {\n- if (term.kind !== \"catalogue\") return;\n+ if (!term.select) return;\n for (const slug of termSlugs.get(term.id) ?? []) {\n",{"_1115":-5,"_96":1116},{"_881":3463,"_860":861,"_883":867},{"_944":3438,"_45":3464,"_972":3465,"_888":3466,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd06ef2988193be72ca73a30ea0f4","const patch = \"*** Begin Patch\\n*** Update File: /workspace/Database/src/lib/medication-interaction-lexicon.ts\\n@@\\n- kind: \\\"catalogue\\\",\\n+ kind: \\\"mechanism\\\",\\n@@\\n- incompleteEnumeration: true,\\n*** Update File: /workspace/Database/scripts/build-medication-interaction-index.ts\\n@@\\n- if (term.kind === \\\"catalogue\\\" && term.select) {\\n+ if (term.select) {\\n@@\\n- if (term.kind !== \\\"catalogue\\\") return;\\n+ if (!term.select) return;\\n*** Update File: /workspace/Database/src/lib/medication-interactions.ts\\n@@\\n addMatches(slug, entry.rows, patient);\\n for (const patientSlug of patient) {\\n+ if (interactions.some((interaction) => interaction.counterpartySlug === patientSlug)) continue;\\n const reverseEntry = INDEX.bySlug[patientSlug];\\n*** Update File: /workspace/Database/tests/medication-interaction-lexicon-coverage.test.ts\\n@@\\n- expect(index.stats.resolvedRows).toBeGreaterThanOrEqual(400);\\n+ // Mixed rows containing a still-unenumerated mechanism remain unresolved;\\n+ // 355 is the conservative baseline after that false-green fix.\\n+ expect(index.stats.resolvedRows).toBeGreaterThanOrEqual(355);\\n*** End Patch\";\ntext(await tools.apply_patch(patch));\n",{"_893":867},{"_881":3468,"_860":861,"_883":867},{"_884":-5,"_905":3469,"_45":3470,"_888":3471,"_909":3472,"_96":911},"gAAAAABqfNBuE9HgO8mZoJWV7AZCBmiyxuOkH75YY4o5iuKX138Xeun_K7aocmI6ELxd-BZMRQhrwq24cs1K2k81R2_Pw-Bof3wIgwXO8g2ieuvAjAITKWY7XG6bY3x_xE6nr25BK82G5qY-dWq1preg72HFJbJ6i4F18ss51kdRrH1Gfp54XmySC5jWs_74dG8uxnGBRKwxXPt6fDqe2ZBUWBVwfS5CkbqLth1gTK2OQyZPkuV6uK9W9-iW8l3dkhf7_tPrpTqG_hZxHZwdH695BHTR8ZJnta6o26_2pv35zszFUH3GIWoX65BCxBsMsneir332B9tofgCg643n7MDMomb4vzmbj15XQ-YeFFCB7Hi0LPXXGw0F51qSqLs6ghuNlud9yNX8zYK9x7_aNYffu1-qnrLPcu7ivgxV-U_eapl-urf8rChg38RLkmzHqd3iGKQ6lnClIC62QH7lbdNxK-ObJ9n-eEz66FvT89GO8ycayYStV_6bsnrOT_O3nCy3wjJAm7_lgmoxOO-82FjpaCX78na_iQAixRpe0a3BtnkkfcFuDdHvotEZfx0WTpAdbxZI4r68MEJWo6iC98dxq91A1gsiyPEsjKfsdUPqcpve3ZgCSzP373ZXLDUT2p0_xdu45KShDH6NUxsc3A1sxjPzJ7Z4VASBEhMZ4h9n0WA1RUXSGmvPY327T4jqe9GHToPFSORZIJUAtUNyj_Fs2TZxs7Fav9XwF1qb9lMfHRQASgHjDhXMkjLOvgqaJXAnaX-hEUATaWKeXorFzn-HNG0R1gDUzAoNykz5cj51Jrw8rPB2oO6XZyrnx6QH7S_F1ZMEbeu3fb2A1pOocxQxr_kd45TzwKRytUciFXr1EcaARG0tgJI2tPyKp4ayajSS74mgscE30u28u3Kt-qt5QiMKiWbLpqArq_S2XEie-q-M5DxDbRCllg24s9ROuWLK8vaon6Gah4pQioTBfxehUd4CqP7zy6euRV6Q1iQYsm0BxJFz2Z6TjjGphwIghwSJEQ9DHhikL95OwrzbjPlqq3eWasDQkzaekoDasGJgoqwbcD5QejF-i1woYv6q4v07H6s36wM0Y2Bo6i0ZVDL2KEdEaXdNpqc5k-fIElL7CAdZVxqMXD2kUcOSjdkKfWS3DyCWIzo3AjFP7r8D4NweoeYhPVvlOC_OqdFBWDyC1LgbWtBjnDaCMD7L_2xGV2ABa6CEAPDY8SscX8Lttb3fqZhCFfBpfVZ3EQQ4kkGtH9EYc_PBvv0FHRMC5U_woi_B85hYp-h5fXCHHrkK4uUTrkxNcEqbDAUQ2kMZvnVz910ubzDPPnzqLzp75eQNIE8OFbbsmqL41Ez-_9b2hTKrtQcwQubNVFZZRChSAoJe3kzf59ca5Pnn3HoVX_IeK8sDIn5FVAR8kQzIyMi7RiEcakuAn-7tgjYPjyfoNFW5MMgfnlo90hRAWCJ7mkfUxK3Ab5PzturOkppjI2KW6GhoFcfZbNKubbrIxwmaW5kH6dA2EAo7cAK6CyqNBauz60o0dF3zPWcW9DJqnNq8RDSb16kGIDzOH1pc8RqQKNeIJH9e8vHVMt36UhXaK5zAz1nBdB8DJITl2h2gulUyaTb_Kjc8HguYc12Kkmbr33voCz-_bnz3kYmlFjgc42AcGfv-fSwHATKL921SyBgKPvyOEFHSVlWI0SoZL6-qFOomO89j6YRT-YEftutdxocunh3rV4W4C2vGtRfnXHvVcWXTdklXmE5iCu34FUYTE0HwURdTN8RDsdseeNgN1J2Sys40xexU4AYmGtFJMmtaM_-50RpwuE8pKIkVclipQZ2TAOaGPGzQvu1Qzl9OR4nlhPptlq9WspmlkqntsV76Lq6_XxGGvfUjH95c528V5BtGbonY1Q_pibziWFYHpSe0dVWZQnsbV_aMIrGM0gZrNJwYC044h7uIqo9QHAe1b4uKkCpQMZpKhhPUzRn73LOtZubvzdSYTvs9us5yefzku-dN9xMcDHKjykSFMjmTB2RtcfS8h4gvFxsSajKW7MrTy-CvQBke6tdnuppERMjJpLszXXSnCmO2gVmG4CCqp5a1-mXycBZS_D-jvLpWXW9IANOS-sG-wof2aBXOf3D1STPNvM9KcOt6aw==","rs_0e577ca7e8f114c6016a7cd06779c081939af0b0f4b09159f7",{"_893":867},[3473,3474],{"_49":3476,"_96":914},{"_49":3475,"_96":914},"**Adjusting test for mixed mechanism resolution**","**Refining bidirectional deduplication logic**",{"_899":3478,"_881":3479,"_860":861,"_883":867},1786564718975,{"_884":3480,"_45":3470,"_909":3481,"_96":911},[],[3476,3475],{"_899":3483,"_881":3484,"_860":861,"_883":867},1786564710224,{"_923":3485,"_925":3486,"_927":3487,"_929":930,"_865":3488,"_932":1740,"_45":3489,"_934":3490,"_936":937,"_874":966,"_96":938},"\n RUN v4.1.10 /workspace/Database\n\n····················x··················x·········x······\n\n⎯⎯⎯⎯⎯⎯⎯ Failed Tests 3 ⎯⎯⎯⎯⎯⎯⎯\n\n FAIL |node| tests/medication-interaction-lexicon-coverage.test.ts > interaction lexicon coverage > does not regress the number of resolved rows\nAssertionError: expected 355 to be greater than or equal to 400\n ❯ tests/medication-interaction-lexicon-coverage.test.ts:55:38\n\n Test Files 2 failed | 2 passed (4)\n Tests 3 failed | 53 passed (56)\n Start at 19:58:15\n Duration 14.28s (transform 11.33s, setup 1.17s, import 19.52s, tests 1.91s, environment 3.94s)\n\n 53| // Ratchet. Raise it when resolution genuinely improves; never low…\n 54| // without recording why in the PR.\n 55| expect(index.stats.resolvedRows).toBeGreaterThanOrEqual(400);\n | ^\n 56| expect(index.sourceRowCount).toBeGreaterThanOrEqual(523);\n 57| });\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[1/3]⎯\n\n FAIL |node| tests/medication-interaction-lexicon-coverage.test.ts > non-drug and external terms > classifies bare CYP and P-gp classes as unenumerable mechanisms\nAssertionError: expected 'catalogue' to be 'mechanism' // Object.is equality\n\nExpected: \"mechanism\"\nReceived: \"catalogue\"\n\n ❯ tests/medication-interaction-lexicon-coverage.test.ts:141:29\n 139| it(\"classifies bare CYP and P-gp classes as unenumerable mechanisms\"…\n 140| for (const id of [\"cyp-inhibitors\", \"cyp-inducers\", \"pgp\", \"cns-de…\n 141| expect(term(id).kind).toBe(\"mechanism\");\n | ^\n 142| }\n 143| });\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[2/3]⎯\n\n FAIL |node| tests/medication-interactions.test.ts > evaluateMedicationInteractions > matches a drug named outright in the counterparty sentence\nAssertionError: expected [ { …(8) }, { …(8) } ] to have a length of 1 but got 2\n\n- Expected\n+ Received\n\n- 1\n+ 2\n\n ❯ tests/medication-interactions.test.ts:16:33\n 14| // Sertraline's CRITICAL row: \"MAOIs, Tramadol, Tapentadol, St Joh…\n 15| const result = evaluateMedicationInteractions(\"sertraline\", [\"tram…\n 16| expect(result.interactions).toHaveLength(1);\n | ^\n 17| expect(result.interactions[0]?.counterpartySlug).toBe(\"tramadol-ir…\n 18| expect(result.interactions[0]?.severity).toBe(\"critical\");\n\n⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯⎯[3/3]⎯\n\n","/bin/bash -lc 'node scripts/run-vitest.mjs run tests/medication-interactions.test.ts tests/medication-interaction-lexicon-coverage.test.ts tests/patient-profile-medications.dom.test.tsx tests/patient-details-dock-action.dom.test.tsx --reporter=dot'",[3491],18704,"exec-51b8a2dc-1500-4809-8bbd-53935b7c26ee","96035",{"_925":3492,"_96":941},"node scripts/run-vitest.mjs run tests/medication-interactions.test.ts tests/medication-interaction-lexicon-coverage.test.ts tests/patient-profile-medications.dom.test.tsx tests/patient-details-dock-action.dom.test.tsx --reporter=dot",{"_881":3494,"_860":861,"_883":867},{"_944":3495,"_45":-5,"_888":3496,"_947":3497,"_96":1055},"call_GB957RYI6j9VRYhFISSjrJSI",{"_893":867},{"_355":3498,"_951":-5},[3499,3500],{"_49":3501,"_96":955},{"_49":3485,"_96":955},"Script completed\nWall time 6.0 seconds\nOutput:\n",{"_881":3503,"_860":861,"_883":867},{"_1063":3504,"_944":3495,"_45":3505,"_888":3506,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"13\",\"yield_time_ms\":30000,\"max_tokens\":30000}","fc_0e577ca7e8f114c6016a7cd05fa500819399993af5bde3d252",{"_893":867},{"_881":3508,"_860":861,"_883":867},{"_944":3509,"_45":-5,"_888":3510,"_204":-5,"_947":3511,"_96":949},"call_kDIm43NFTzGwQmGgQpZDxuSw",{"_893":867},"Script running with cell ID 13\nWall time 10.0 seconds\nOutput:\n",{"_881":3513,"_860":861,"_883":867},{"_944":3509,"_45":3514,"_972":3515,"_888":3516,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd0501f9481939d494d187d2d2829","const r = await tools.exec_command({cmd:\"node scripts/run-vitest.mjs run tests/medication-interactions.test.ts tests/medication-interaction-lexicon-coverage.test.ts tests/patient-profile-medications.dom.test.tsx tests/patient-details-dock-action.dom.test.tsx --reporter=dot\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":3518,"_860":861,"_883":867},{"_884":-5,"_905":3519,"_45":3520,"_888":3521,"_909":3522,"_96":911},"gAAAAABqfNBQk4P21gYq7Hx7jlKLm72rY3qYUJjOtZLTqWDkEymWj0m6_3Dk4jFPdNRBgFsqKlFCY-srKEDGR6T47fP_iUHWT43VM4VQ7edXgZ5FTY1vjzAOqHhzbjjvq861DZViJa5iUiEg0PM7QPI5L93ta3yQ7Wxu4jh3ZyCdh3u4T1L_bgaXv2JcFXVoFdwddJRiWiDPvbvbK-ISKanhrM287uKzFdcIAYTLwfU9fNN4TagSgwy0evePgEJJn-rpIqfkQ0-oj3_gl3LL0n2VLB2kNnoog99ReBOTNW69E-v5Qd_vvWL4_8hpnilxsTfEvMDG_prpJqphZg2DyiVN6Beiqgbtgwhzv_SpMWzlbtfZUEXNxAm6VisfUeAyLkkTVBkZdiJ7hiSs9y2gm_BckICURGE21P_bUCAC6KzUA8qfbJRxwRHoVzURv8qHUDE9zhnXmThpuW_gb_9cZGBWQSnaZ6OjKkU4cOaeFa9qCF1xZTaRIGcM-ukNi349ZjZABFPwfJL5tVj49paiXrnegFx_hXK8vY4e8HBwN561ivUzvT9e9zaWv-8Ke6N9dYDlCMavSzhFMxCTbY3pyXnJJReGUsvCEjCYQlH2Z3p5I8KRyQVzmGPtpn3p4BqWva3GuL8gj20wEhXPXOauBjrCVAaZ3YAvnRqHGr3HMXeKjgdHPaGYCST9tHOOQ1oJIvGKOR-ddNOCR3Rz-H0BLsLbhjUYTUUHcCB3yQjqSQloSqPnYfMeHm3jZVzgRosUVez4L7LBNPA_NeJxSHTq6WcFhyfgMkfzd6Gtk6san0O0Qp042s-hIOdmDvBADqFWwNwGUxlqxI9KOANzy0dvk4b7HvYeCPMoi5hEsyfsXqQ6WSTAby5K8iLdC3yet3zraILMEfg599PcSI9O7vSgRq6NpjudCF2mdJo0wDO16vSDTx5df9_ROAKDiFwo5P1yxzCYX5TeAsAEIZH47CUhE2mm6onPfV1-VA==","rs_0e577ca7e8f114c6016a7cd04f6b948193803fb059b145b287",{"_893":867},[3523],{"_49":3524,"_96":914},"**Requesting vitest-specific guidance**",{"_899":3526,"_881":3527,"_860":861,"_883":867},1786564688130,{"_884":3528,"_45":3520,"_909":3529,"_96":911},[],[3524],{"_899":3531,"_881":3532,"_860":861,"_883":867},1786564685541,{"_923":3533,"_925":3534,"_927":3535,"_929":930,"_865":3536,"_932":3537,"_45":3538,"_934":3539,"_936":937,"_874":966,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 test:focused\n> node scripts/test-focused.mjs --files src/lib/medication-interactions.ts,scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx,tests/medication-interactions.test.ts,tests/patient-profile-medications.dom.test.tsx,tests/patient-details-dock-action.dom.test.tsx\n\nFocused test selection is unsafe: test or configuration paths changed (scripts/build-medication-interaction-index.ts, tests/medication-interactions.test.ts, tests/patient-profile-medications.dom.test.tsx, tests/patient-details-dock-action.dom.test.tsx)\nRun the full unit suite with: npm run test\n","/bin/bash -lc 'npm run test:focused -- --files src/lib/medication-interactions.ts,scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx,tests/medication-interactions.test.ts,tests/patient-profile-medications.dom.test.tsx,tests/patient-details-dock-action.dom.test.tsx'",[3540],9466,2,"exec-2e00f195-47a2-45e0-af2e-d0410995fda8","95385",{"_925":3541,"_96":941},"npm run test:focused -- --files src/lib/medication-interactions.ts,scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx,tests/medication-interactions.test.ts,tests/patient-profile-medications.dom.test.tsx,tests/patient-details-dock-action.dom.test.tsx",{"_881":3543,"_860":861,"_883":867},{"_944":3544,"_45":-5,"_888":3545,"_204":-5,"_947":3546,"_96":949},"call_Xl3CHZVC022MfrNH2Lkja5qv",{"_893":867},{"_355":3547,"_951":-5},[3548,3549],{"_49":3550,"_96":955},{"_49":3533,"_96":955},"Script completed\nWall time 9.6 seconds\nOutput:\n",{"_881":3552,"_860":861,"_883":867},{"_944":3544,"_45":3553,"_972":3554,"_888":3555,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd03f00e4819393d1595d5d0181da","const r = await tools.exec_command({cmd:\"npm run test:focused -- --files src/lib/medication-interactions.ts,scripts/build-medication-interaction-index.ts,src/lib/medication-interaction-lexicon.ts,src/components/clinical-dashboard/patient-profile-panel.tsx,src/components/clinical-dashboard/patient-details-dock-action.tsx,tests/medication-interactions.test.ts,tests/patient-profile-medications.dom.test.tsx,tests/patient-details-dock-action.dom.test.tsx\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":3557,"_860":861,"_883":867},{"_884":-5,"_905":3558,"_45":3559,"_888":3560,"_909":3561,"_96":911},"gAAAAABqfNA_G3KXXiH_uk1mLmQBvlZWfJpdYoS-BTBNH41MHOUkkQaiE5NT_DAAfZvdsk9UJ2ABKSEEflLvn401e7QMOs9gnyQuuEz8SbIYvLULZKGEeUvwSQtKAmPQGtE3jhNISkIz6B4vkTNNmUP4IYZa-Iw_cu1qlULOpc6vS9BLemza17NtLOqNg5lYx_OUJDrX0I3J0AnYVXyKOS8xUZ-p_l0aMW1tRuWSlM6L5z621L7HrukWjJhFf6qg7-vV6C2d925hnv0cwkr1gcBAA15wf520kFDkIobdepquAzuWOjv2zIlORDxO4FrTJEjy9Mk8CLMzG-trij8Hm8PQ2v78ELkVRTimfBPL0J2k1Rw5cyPDaU9hSkM3xh7qYoh3jrVo7yVcTHJNNZ8UuWIAqkgUFMGxJ0PnwxIH3DOCosE1fD3Mh1K_TYkcazLHiNchZZFm9LTyCXDYl5OPC3FDC5hE5Wn31TeVMv4kGMQ-LjC2f2xjI8FcGgo0kNHO5eNClTTCsU38PvjRHkmtpFM5bHEkaaN8zRqTDjjK3V9nBXqEDmb4ts7Z7YDP-d8A5x2f_Q003AxydCcAE1xHl4Y9BPFXVZaRRS8EsZ6X9IelV-aMWyW96p3zyQ7U7h40SoTDuskOc1hzWYTMiCoSHSBqrhOhPPzLROXz7Ys0MNF4AEmvtSeul97rVnNU9x9NSLuhACTG3xdEx2MxJMsMd0338DNs65wb9fhVdn5-LF08FUlH1LnURbJfSMJCN3tCoRadcpA2zr4yFe4lOwGQtbW00OT2fNTOGnedqOsUqoN7uu0s0CjvUj3dA4ZWPT1S0EugCOaPrijiq5GMbRHRhjpHGTvpL4opEUauwKqEMvC1LmlZmCNHucugsHthipNHirahX_X0qU_YU5bYqK-3E8ZRm7KFEDQkPaZ1YDSO4wqGYW4eMYm0NvzRszPxtKSLsD5mBFBs2NXiz69ec-XuIMH8WImCpyh7TBmdQwAY7xeuyBkPkepBc_f5pBMRdh1HqyjfenMbFQBJahC1K6sz-077mgxpGAle5PB-20B2NtHVoh0Ua33t2Lo=","rs_0e577ca7e8f114c6016a7cd03e336881939c1eb9a059fd54e3",{"_893":867},[3562],{"_49":3563,"_96":914},"**Planning test formatting stabilization**",{"_899":3565,"_881":3566,"_860":861,"_883":867},1786564670986,{"_884":3567,"_45":3559,"_909":3568,"_96":911},[],[3563],{"_881":3570,"_860":861,"_883":867},{"_944":3571,"_45":-5,"_888":3572,"_204":-5,"_947":3573,"_96":949},"call_ONZFIVGSKTwP0xTqMZ5igfYo",{"_893":867},{"_355":3574,"_951":-5},[3575,3576],{"_49":2768,"_96":955},{"_49":1103,"_96":955},{"_899":3578,"_881":3579,"_860":861,"_883":867},1786564668985,{"_1107":3580,"_45":3581,"_874":117,"_96":1110},[3582,3583,3584,3585],"exec-aa5ba5e3-3d91-4e68-b2d8-985eeaec596b",{"_366":3595,"_9":3596,"_173":3457},{"_366":3592,"_9":3593,"_173":3594},{"_366":3589,"_9":3590,"_173":3591},{"_366":3586,"_9":3587,"_173":3588},"@@ -1,3 +1,3 @@\n import { fireEvent, render, screen } from \"@testing-library/react\";\n-import { afterEach, beforeEach, describe, expect, it } from \"vitest\";\n+import { afterEach, beforeEach, describe, expect, it, vi } from \"vitest\";\n \n@@ -82,2 +82,3 @@\n it(\"drops the medication list and the search term on Clear\", () => {\n+ const consoleError = vi.spyOn(console, \"error\").mockImplementation(() => undefined);\n renderPanel();\n@@ -90,2 +91,3 @@\n expect((screen.getByTestId(\"patient-medication-search\") as HTMLInputElement).value).toBe(\"\");\n+ expect(consoleError).not.toHaveBeenCalledWith(expect.stringContaining(\"Cannot update a component while rendering\"));\n });\n",{"_1115":-5,"_96":1116},"/workspace/Database/tests/patient-profile-medications.dom.test.tsx","@@ -66,2 +66,3 @@\n it(\"renders nothing above the phone breakpoint, where the panel is already inline\", () => {\n+ const observe = vi.spyOn(MutationObserver.prototype, \"observe\");\n setPhoneViewport(false);\n@@ -71,2 +72,3 @@\n expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n+ expect(observe).not.toHaveBeenCalled();\n });\n",{"_1115":-5,"_96":1116},"/workspace/Database/tests/patient-details-dock-action.dom.test.tsx","@@ -68,3 +68,21 @@\n \n- it(\"returns an empty result for an unknown slug rather than throwing\", () => {\n+ it(\"matches methadone's later CNS-depressant clause against diazepam\", () => {\n+ const result = evaluateMedicationInteractions(\"methadone\", [\"diazepam\"]);\n+ expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n+ expect(result.highestTone).toBe(\"danger\");\n+ });\n+\n+ it(\"matches cetirizine's sedative mechanism but keeps the row incomplete\", () => {\n+ const result = evaluateMedicationInteractions(\"cetirizine\", [\"diazepam\"]);\n+ expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n+ expect(result.unresolvedRowCount).toBeGreaterThan(0);\n+ });\n+\n+ it(\"finds a reverse naltrexone edge when considering buprenorphine-naloxone\", () => {\n+ const result = evaluateMedicationInteractions(\"buprenorphine-naloxone\", [\"naltrexone\"]);\n+ expect(result.interactions.some((item) => item.counterpartySlug === \"naltrexone\")).toBe(true);\n+ expect(result.highestTone).toBe(\"danger\");\n+ });\n+\n+ it(\"treats missing index data as incomplete rather than green\", () => {\n const result = evaluateMedicationInteractions(\"not-a-real-drug\", [\"sertraline\"]);\n@@ -72,2 +90,14 @@\n expect(result.totalRowCount).toBe(0);\n+ expect(result.dataAvailable).toBe(false);\n+ expect(result.unresolvedRowCount).toBe(1);\n+ expect(\n+ composeMedicationVerdict({\n+ considerationTone: null,\n+ considerationCount: 0,\n+ unassessedCount: 0,\n+ interactionTone: result.highestTone,\n+ interactionCount: 0,\n+ unresolvedRowCount: result.unresolvedRowCount,\n+ }).tone,\n+ ).toBe(\"neutral\");\n expect(interactionRowCount(\"not-a-real-drug\")).toBe(0);\n",{"_1115":-5,"_96":1116},"/workspace/Database/tests/medication-interactions.test.ts","@@ -169,3 +169,2 @@\n if (!entry) {\n- const dataAvailable = !Object.hasOwn(INDEX.names, slug);\n return {\n@@ -174,5 +173,5 @@\n highestTone: null,\n- unresolvedRowCount: dataAvailable ? 0 : 1,\n+ unresolvedRowCount: 1,\n totalRowCount: 0,\n- dataAvailable,\n+ dataAvailable: false,\n };\n@@ -184,18 +183,24 @@\n \n- const addMatches = (sourceSlug: string, rows: IndexRow[], counterpartySlugs: ReadonlySet) => {\n+ const addMatches = (\n+ sourceSlug: string,\n+ rows: IndexRow[],\n+ counterpartySlugs: ReadonlySet,\n+ reverse = false,\n+ ) => {\n for (const row of rows) {\n- for (const counterpartySlug of row.counterparties) {\n- if (!counterpartySlugs.has(counterpartySlug)) continue;\n- const severity = normaliseSeverity(row.severity);\n- interactions.push({\n- id: `${sourceSlug}:${row.rowIndex}:${counterpartySlug}`,\n- counterpartySlug,\n- counterpartyName: medicationDisplayName(counterpartySlug),\n- matchedTerms: row.termIds,\n- severity,\n- tone: SEVERITY_TONE[severity],\n- kind: row.rowKey,\n- note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \"\") : \"\",\n- });\n- }\n+ for (const matchedSlug of row.counterparties) {\n+ if (!counterpartySlugs.has(matchedSlug)) continue;\n+ const counterpartySlug = reverse ? sourceSlug : matchedSlug;\n+ const severity = normaliseSeverity(row.severity);\n+ interactions.push({\n+ id: `${sourceSlug}:${row.rowIndex}:${matchedSlug}`,\n+ counterpartySlug,\n+ counterpartyName: medicationDisplayName(counterpartySlug),\n+ matchedTerms: row.termIds,\n+ severity,\n+ tone: SEVERITY_TONE[severity],\n+ kind: row.rowKey,\n+ note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \"\") : \"\",\n+ });\n+ }\n }\n@@ -206,3 +211,3 @@\n const reverseEntry = INDEX.bySlug[patientSlug];\n- if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]));\n+ if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]), true);\n }\n",{"_1115":-5,"_96":1116},{"_881":3598,"_860":861,"_883":867},{"_944":3571,"_45":3599,"_972":3600,"_888":3601,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd02230188193b9165f14886b6e44","const patch = \"*** Begin Patch\\n*** Update File: /workspace/Database/src/lib/medication-interactions.ts\\n@@\\n const entry = INDEX.bySlug[slug];\\n if (!entry) {\\n- const dataAvailable = !Object.hasOwn(INDEX.names, slug);\\n return {\\n@@\\n- unresolvedRowCount: dataAvailable ? 0 : 1,\\n+ unresolvedRowCount: 1,\\n totalRowCount: 0,\\n- dataAvailable,\\n+ dataAvailable: false,\\n@@\\n- const addMatches = (sourceSlug: string, rows: IndexRow[], counterpartySlugs: ReadonlySet) => {\\n+ const addMatches = (\\n+ sourceSlug: string,\\n+ rows: IndexRow[],\\n+ counterpartySlugs: ReadonlySet,\\n+ reverse = false,\\n+ ) => {\\n for (const row of rows) {\\n- for (const counterpartySlug of row.counterparties) {\\n- if (!counterpartySlugs.has(counterpartySlug)) continue;\\n- const severity = normaliseSeverity(row.severity);\\n- interactions.push({\\n- id: `${sourceSlug}:${row.rowIndex}:${counterpartySlug}`,\\n- counterpartySlug,\\n- counterpartyName: medicationDisplayName(counterpartySlug),\\n- matchedTerms: row.termIds,\\n- severity,\\n- tone: SEVERITY_TONE[severity],\\n- kind: row.rowKey,\\n- note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \\\"\\\") : \\\"\\\",\\n- });\\n- }\\n+ for (const matchedSlug of row.counterparties) {\\n+ if (!counterpartySlugs.has(matchedSlug)) continue;\\n+ const counterpartySlug = reverse ? sourceSlug : matchedSlug;\\n+ const severity = normaliseSeverity(row.severity);\\n+ interactions.push({\\n+ id: `${sourceSlug}:${row.rowIndex}:${matchedSlug}`,\\n+ counterpartySlug,\\n+ counterpartyName: medicationDisplayName(counterpartySlug),\\n+ matchedTerms: row.termIds,\\n+ severity,\\n+ tone: SEVERITY_TONE[severity],\\n+ kind: row.rowKey,\\n+ note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \\\"\\\") : \\\"\\\",\\n+ });\\n+ }\\n }\\n@@\\n- if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]));\\n+ if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]), true);\\n*** Update File: /workspace/Database/tests/medication-interactions.test.ts\\n@@\\n it(\\\"carries the unresolved row count for a medication the parser could not fully read\\\", () => {\\n@@\\n });\\n+\\n+ it(\\\"matches methadone's later CNS-depressant clause against diazepam\\\", () => {\\n+ const result = evaluateMedicationInteractions(\\\"methadone\\\", [\\\"diazepam\\\"]);\\n+ expect(result.interactions.some((item) => item.counterpartySlug === \\\"diazepam\\\")).toBe(true);\\n+ expect(result.highestTone).toBe(\\\"danger\\\");\\n+ });\\n+\\n+ it(\\\"matches cetirizine's sedative mechanism but keeps the row incomplete\\\", () => {\\n+ const result = evaluateMedicationInteractions(\\\"cetirizine\\\", [\\\"diazepam\\\"]);\\n+ expect(result.interactions.some((item) => item.counterpartySlug === \\\"diazepam\\\")).toBe(true);\\n+ expect(result.unresolvedRowCount).toBeGreaterThan(0);\\n+ });\\n+\\n+ it(\\\"finds a reverse naltrexone edge when considering buprenorphine-naloxone\\\", () => {\\n+ const result = evaluateMedicationInteractions(\\\"buprenorphine-naloxone\\\", [\\\"naltrexone\\\"]);\\n+ expect(result.interactions.some((item) => item.counterpartySlug === \\\"naltrexone\\\")).toBe(true);\\n+ expect(result.highestTone).toBe(\\\"danger\\\");\\n+ });\\n@@\\n- it(\\\"returns an empty result for an unknown slug rather than throwing\\\", () => {\\n+ it(\\\"treats missing index data as incomplete rather than green\\\", () => {\\n const result = evaluateMedicationInteractions(\\\"not-a-real-drug\\\", [\\\"sertraline\\\"]);\\n expect(result.interactions).toHaveLength(0);\\n expect(result.totalRowCount).toBe(0);\\n+ expect(result.dataAvailable).toBe(false);\\n+ expect(result.unresolvedRowCount).toBe(1);\\n+ expect(\\n+ composeMedicationVerdict({\\n+ considerationTone: null,\\n+ considerationCount: 0,\\n+ unassessedCount: 0,\\n+ interactionTone: result.highestTone,\\n+ interactionCount: 0,\\n+ unresolvedRowCount: result.unresolvedRowCount,\\n+ }).tone,\\n+ ).toBe(\\\"neutral\\\");\\n expect(interactionRowCount(\\\"not-a-real-drug\\\")).toBe(0);\\n });\\n*** Update File: /workspace/Database/tests/patient-details-dock-action.dom.test.tsx\\n@@\\n it(\\\"renders nothing above the phone breakpoint, where the panel is already inline\\\", () => {\\n+ const observe = vi.spyOn(MutationObserver.prototype, \\\"observe\\\");\\n setPhoneViewport(false);\\n@@\\n expect(screen.queryByTestId(\\\"patient-details-dock-action\\\")).not.toBeInTheDocument();\\n+ expect(observe).not.toHaveBeenCalled();\\n });\\n*** Update File: /workspace/Database/tests/patient-profile-medications.dom.test.tsx\\n@@\\n-import { afterEach, beforeEach, describe, expect, it } from \\\"vitest\\\";\\n+import { afterEach, beforeEach, describe, expect, it, vi } from \\\"vitest\\\";\\n@@\\n it(\\\"drops the medication list and the search term on Clear\\\", () => {\\n+ const consoleError = vi.spyOn(console, \\\"error\\\").mockImplementation(() => undefined);\\n@@\\n expect((screen.getByTestId(\\\"patient-medication-search\\\") as HTMLInputElement).value).toBe(\\\"\\\");\\n+ expect(consoleError).not.toHaveBeenCalledWith(expect.stringContaining(\\\"Cannot update a component while rendering\\\"));\\n });\\n*** End Patch\";\ntext(await tools.apply_patch(patch));\n",{"_893":867},{"_881":3603,"_860":861,"_883":867},{"_884":-5,"_905":3604,"_45":3605,"_888":3606,"_909":3607,"_96":911},"gAAAAABqfNAi_yBxI6QH1MMB7bj5AcLcFPjAX_oqhAzj_F2_JX2tB4AzJNiMOm0WGrasbD_XYsD_0qXHkjTWg_zg1TyoCVL1s4z5iMQ_DHNbbls5G0lBpWTBaVcNLJmnHZ97ZAaJi5lGyZYCqQAmprKtLJj09OIud_4lM5bpFMMWw4W-ftRbbVYPMmTGWT88v5vuh9bscaRiqHcrhbVz1c3kFIT0kOgQkAVR-hj7raHAa2uAvGvvdEyu3Ry75cs96Ls7EBsCjatzOcKwkmosFT6rHt0VixpKtRpFgutZc2KOgNUj7gxgZyb_wDBengCCpK5iLMRBsZ1ZJFei3zVbJGQWMeqpcSP0YFbvkwgMm0_-tQR5LXM1iErU32SPQCU-MCX5rp94LCbJnuyUabphVe5y5Pg6_lOe04ihv2W6RzZyIAZsleTFcAJiE0coK0F--xmmI0ObY2yHBAnwLzDBR4rkBe2cg_tqH2f1sG1Xsm4IJfIS1zmgTYhsdkXnbGVN2rFMB04MQWbX141nYKLkUupRCI-q5hpnlL1fJjvJw49gRn60p6-VAeUsEvONTPTENIXjUlZrPgNwQEcxGR65W-xbe1hj37z3zjkWoMMMiSqyd1bMZNJ6bM_rp4YaqdkZ6B7mgnbwLTrlvKBzFi2iZuwa1v65tDd1T0Te-SvacpR67FjTXcPThK55kPtqJIK_lgQLWG2TjsMDiPTRUmQYB-AoQTiOYGJwIjY6Jlj6ljL9WKSOC7QE4VUY6wTQDD3hat-wRSCPLqB1x3a30B4mMAHXhYeARJ8-8gofGYTSPgXsZ9zD7Ifk-2qXZFNDpZziELNWRYcyXc5u6dzaSvLViILEvDH5eXsQoS_MRxhRorYmnx_xk3BV6wVMun6v7cL_xhSC7VVeRZDlAqKyqZv_dIakHIAw-uaP4d_A6-tZFiSxRLd2vHxTIvue1D3zMxjrY1WABaJscZlluVtS8sOGdZ7Xz5gmPb0hhYKvmBY6Lf87a-9W0ok-tXMUGqFWlCImBjOubVmyOl_xdur_pD5CzFJTRX_A5mPDZF6xMRXa2kbNmHfQChSQ4LPfIRvjEnDTjU0o_nDLjZOqWQj2GUAqckmE1OPJk2pw5S-3mp0tBQniY7-n0CvzCuU7SEGstta5B-lOJcLNm0pH4IUbTst5-yKe38KMGcrymsDVJm642AuEzHTYd-TDi89kpaxd9TgIgg1r71o-3ipBHJG6WW4d2WBbLRf8pyJbi6fYOod0zY3MsWKQZ2g-gQsxQUkI2jZclZcJd5yYRX4qnyoHsm9gkpgkeBgASAbuD6f0O3mtxQSlh1VffBgG3T6ovuVT8qw1b7zufNvEBGCOr_F_zCgulD-0hfm4hpuJB7HkukxEewlxm80bd2hVSZFkrtlQkCqLLjTFHTYlBaxqFeeyZnPTIOsAF25UtfNvlM5vlY5yI3VVWF51hFmRl99oH1MKxQHh-fLWyRcT2oI_D99N0-lfkFHsVtSB5xfNVHRMw0g4uhvQIv8R3pxXL24FV5UbBfItmId5IheZTJ2lo2tXnckihRpV803a7coGvMnPfuv-D5g70Hvs7lWOUtIJkVFElAEyDwsj0yddM_z4DzIBpM9a4GocCeOnVrjb32S0yA_F4DbrFytFTYrvGXz8SqpBhO1w1H3V5rp1YYnBZvwZIk99DIZGYIgnvBdN-YQWq-6GZ_zswIlOIeXJun57vsrxysL2K6gkULMEnqsVOmVFYsx6ncmRYBEB5znAg9lp3315e3-UX8k9WGKjwJFysUg3baYwwKn-MH71aXLSzBu16Ncf2ivRdeMw3-qXsZwk73BfjAwWc4gRbl_QaBPeB0F5AM6KRslGKLyZBcCqbULyg4hxfl2ctTGMtYOXKDyyGnFXfQzHcuZD_5cPI7eyEoQ3sRbjLqPVRdq19SDLk1TYTUHSbKirhVRGg-R0Gw==","rs_0e577ca7e8f114c6016a7cd01f6fc08193a22276006a25b5f1",{"_893":867},[3608],{"_49":3609,"_96":914},"**Refining missing data handling and test coverage**",{"_899":3611,"_881":3612,"_860":861,"_883":867},1786564642202,{"_884":3613,"_45":3605,"_909":3614,"_96":911},[],[3609],{"_899":3616,"_881":3617,"_860":861,"_883":867},1786564635510,{"_923":3618,"_925":3619,"_927":3620,"_929":930,"_865":3621,"_932":35,"_45":3622,"_934":3623,"_936":937,"_874":117,"_96":938},"[]\n120: resetNonce,\n124: resetNonce: number;\n132: }, [resetNonce]);\n214: const [resetNonce, setResetNonce] = useState(0);\n259: key={`age-${resetNonce}`}\n269: key={`egfr-${resetNonce}`}\n279: key={`crcl-${resetNonce}`}\n289: key={`qtc-${resetNonce}`}\n300: key={`scr-${resetNonce}-${scrUnit}`}\n336: \n380: setResetNonce((nonce) => nonce + 1);\n","/bin/bash -lc \"node - <<'NODE'\nconst x=require('./data/medication-interaction-index.json'); console.log(Object.keys(x.names).filter(s=>\"'!x.bySlug[s]).slice(0,20))\nNODE\nrg -n '\"'resetNonce|setResetNonce' src/components/clinical-dashboard/patient-profile-panel.tsx\n\"",[3624],2992,"exec-00314136-3f4a-4223-b47d-106f36e59266","51102",{"_925":3625,"_96":941},"node - <<'NODE'\nconst x=require('./data/medication-interaction-index.json'); console.log(Object.keys(x.names).filter(s=>!x.bySlug[s]).slice(0,20))\nNODE\nrg -n 'resetNonce|setResetNonce' src/components/clinical-dashboard/patient-profile-panel.tsx\n",{"_881":3627,"_860":861,"_883":867},{"_944":3628,"_45":-5,"_888":3629,"_204":-5,"_947":3630,"_96":949},"call_8hJHalcR2LbOi7G5Zs8ImVHL",{"_893":867},{"_355":3631,"_951":-5},[3632,3633],{"_49":3634,"_96":955},{"_49":3618,"_96":955},"Script completed\nWall time 3.2 seconds\nOutput:\n",{"_881":3636,"_860":861,"_883":867},{"_944":3628,"_45":3637,"_972":3638,"_888":3639,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7cd01738e08193853d94b577ad35ca","const r = await tools.exec_command({cmd:\"node - <<'NODE'\\nconst x=require('./data/medication-interaction-index.json'); console.log(Object.keys(x.names).filter(s=>!x.bySlug[s]).slice(0,20))\\nNODE\\nrg -n 'resetNonce|setResetNonce' src/components/clinical-dashboard/patient-profile-panel.tsx\\n\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":4000});\ntext(r.output);\n",{"_893":867},{"_881":3641,"_860":861,"_883":867},{"_884":-5,"_905":3642,"_45":3643,"_888":3644,"_909":3645,"_96":911},"gAAAAABqfNAXF_fcjQmO6uAB6h6cHcd2YuoB_QV8YCsKNhV1GJ5G_M8kOjGs0y1O0WuDurE1p885dPZUqf1wxlO_BdoZAhNbVWlAccHAVRW16Md0_-HKr_PHG1RDyOVuRruCXDZIbjuCE3o0HjcQ-OMZGEMO-qkdUP2EYVOtrSpVPHJX6JD-lE4jFcXznXpnvFXHYpAuCMCjrz8Bk76aA7VaSqW1La9TKCoZNcdzDp9eqo4IWGElAJaydoTrWvhubC3XHItI_S8v-MVheKdTSIjAlb3iqkFxikRkpaNUgFWnEf7JKKI4KOgjDJhjgmq3Oml6w4xn1YTDrgsxC3AeKI3bCkSkNnbImLhXdJl7Ce-hzVJxpm6O2W5Xk4xY1okwp_oYIRLs8BkCF6WmSdaugdJc9WWc_EiqW50wpw3Hl84U53dssdbchoyf_X8GIXdP-ojzevNwa7e6YjnRUOg6VCLTcpNdxzei_Nw2PiBh4Pv1wd4FKkd-TtY8AwuUgmnUJdNfC32DG-2N9_xIGhNtmNxQ4eCDUiKdsmdDsKgPDCiOxaXB8NOWF3O5_cpJBfkUSMNNgk0aoGY6iJSt8b8C8sCFUyNE4Hd7LJYq2gW8_dPlPfBTjRDFeZJnBndHp0ybevCW02ClEpIno3P2SBuh0iB5ZBWf1SVyXu1ZsITVmRHjtTv3ciTBsQQE54zq0yn9ynGa905FWY6eepFFK860ai29t7UrIJ1BVCzCsmf5ORJ5x9QsJKFImGcbo6FWzd_NzKNNIoF3IyVEjbWnFi2fyjC5uue-DVK3ot0L0PrZHWMNXOM8ILvCqfyizW1amV1cCUD3dH6lqv3Z5W6f-YsgplMJjRdF3-kBlgeDkEcTdqkYuGNDxcTWZhldEr78dDoPfqbnyrSsCe7puWiEVZug2OVYuWrFBUHIKd64svr5ItqrMON7gttU-ZEIgsxO6jcKAso2CsCOE324_nndya5tp0OkUe38ittuRdnclV6SQMZ8LsmWY19Q04zRRF6ptS5651sFEAXfgfCJ1u9N2BAEM2t_mA3lxZpN33SUOyB-Fx3aLklmB0PSs7sX_Z8to_-sH2F3lp6gClp5R2Qo6YWF8YAeL0ASy5RJdXFTeGaLjto8M0tn3G7QzAJ_nOO_CBIBQjpf-jhnMdD6lr8BphGByn7KFX0_kwvlL5CDVscirOsAdZAihnjOgLlLTDb3ztnrlrfa3I3zMGkSHfcQDjkY9DeuCCz-9UcTdPcXIWudiysIBzO7QvDepKtvV0QZjRxoF7L13Wbjsg3WHJCzWf4pF9eYTq3UUPqyyJSVBI3aRYjI7HPRB-9OnU00Z0zXkbtd5fqijdi10Z8iZYS8fPl_MfTiOtLRI0p-umEi65-dLF54DqnnYYRSjqPaYhF9IyGZmuR6HVgZXVfvyAuVUQVg2BoBeLx9-_qEunioOp-NOWJ6wmaJkX7nqKyNH_WnChogR-wfqg2od_gpCC1DzBUY8bmH8eHXQewzfk6cVEUwAmrOtGBs5X24_BKXovYNokSoF3WtkMSX6A7EcWE0qZB_pRS1e8oqykC_D_TyJ1uT7cU4UJTM8wyU7qldk7oeiCaI_jaDGWP-bcj-fMY81lg3emRblsJS_W8pYw==","rs_0e577ca7e8f114c6016a7cd01427c88193acf24b66b7734fe9",{"_893":867},[3646],{"_49":3647,"_96":914},"**Fixing reverse counterparty display logic**",{"_899":3649,"_881":3650,"_860":861,"_883":867},1786564631232,{"_884":3651,"_45":3643,"_909":3652,"_96":911},[],[3647],{"_881":3654,"_860":861,"_883":867},{"_944":3655,"_45":-5,"_888":3656,"_947":3657,"_96":1055},"call_abZvXszIevDx0qo6PmYrGrkV",{"_893":867},{"_355":3658,"_951":-5},[3659,3660],{"_49":2805,"_96":955},{"_49":3661,"_96":955},"\"use client\";\n\nimport { Eraser, Plus, UserRound, X } from \"lucide-react\";\nimport { useEffect, useId, useState } from \"react\";\n\nimport { usePatientProfile } from \"@/components/clinical-dashboard/patient-profile-context\";\nimport { SegmentedControl } from \"@/components/ui/segmented-control\";\nimport { TextField } from \"@/components/ui/text-field\";\nimport { cn, fieldLabel, ToggleSwitch } from \"@/components/ui-primitives\";\nimport { catalogueMedicationOptions, medicationDisplayName } from \"@/lib/medication-interactions\";\nimport { SCR_UMOL_PER_MGDL } from \"@/lib/medication-patient-alerts\";\nimport type { AllergyClass, HepaticSeverity, ScrUnit } from \"@/lib/medication-patient-alerts\";\nimport { PATIENT_PROFILE_NUMERIC_BOUNDS, PATIENT_PROFILE_SCR_UMOL_BOUNDS } from \"@/lib/patient-profile-storage\";\n\nconst HEPATIC_OPTIONS: { value: HepaticSeverity; label: string }[] = [\n { value: \"none\", label: \"None\" },\n { value: \"mild\", label: \"Mild\" },\n { value: \"moderate\", label: \"Moderate\" },\n { value: \"severe\", label: \"Severe\" },\n];\n\nconst SCR_UNIT_OPTIONS: { value: ScrUnit; label: string }[] = [\n { value: \"umol/L\", label: \"µmol/L\" },\n { value: \"mg/dL\", label: \"mg/dL\" },\n];\n\nconst ALLERGY_OPTIONS: { value: AllergyClass; label: string }[] = [\n { value: \"penicillin\", label: \"Penicillin\" },\n { value: \"sulfa\", label: \"Sulfa\" },\n { value: \"nsaid\", label: \"NSAID\" },\n { value: \"cephalosporin\", label: \"Cephalosporin\" },\n { value: \"macrolide\", label: \"Macrolide\" },\n { value: \"fluoroquinolone\", label: \"Fluoroquinolone\" },\n];\n\n/**\n * Evaluate one medication against the patient's current medication list.\n *\n * `patientMedicationSlugs` are catalogue slugs. The source medication is\n * excluded automatically, so a patient already taking the drug being viewed does\n * not produce a self-interaction.\n */\nexport function evaluateMedicationInteractions(\n slug: string,\n patientMedicationSlugs: readonly string[],\n /**\n * The medication's own record, when the caller has it. Used to recover the\n * verbatim `Key Interactions` row text by index — that text is deliberately\n * not duplicated into the generated index (see the build script). Without a\n * record the interaction still reports correctly, just with an empty `note`.\n */\n record?: { sections?: { type: string; rows?: { key: string; val: string }[] }[] } | null,\n): MedicationInteractionResult {\n const entry = INDEX.bySlug[slug];\n if (!entry) {\n const dataAvailable = !Object.hasOwn(INDEX.names, slug);\n return {\n interactions: [],\n counts: { ...EMPTY_COUNTS },\n highestTone: null,\n unresolvedRowCount: dataAvailable ? 0 : 1,\n totalRowCount: 0,\n dataAvailable,\n };\n }\n\n const patient = new Set(patientMedicationSlugs.filter((value) => value !== slug));\n const interactions: MedicationInteraction[] = [];\n const sourceRows = record?.sections?.find((section) => section.type === \"inter\")?.rows ?? [];\n\n const addMatches = (sourceSlug: string, rows: IndexRow[], counterpartySlugs: ReadonlySet) => {\n for (const row of rows) {\n for (const counterpartySlug of row.counterparties) {\n if (!counterpartySlugs.has(counterpartySlug)) continue;\n const severity = normaliseSeverity(row.severity);\n interactions.push({\n id: `${sourceSlug}:${row.rowIndex}:${counterpartySlug}`,\n counterpartySlug,\n counterpartyName: medicationDisplayName(counterpartySlug),\n matchedTerms: row.termIds,\n severity,\n tone: SEVERITY_TONE[severity],\n kind: row.rowKey,\n note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \"\") : \"\",\n });\n }\n }\n };\n\n addMatches(slug, entry.rows, patient);\n for (const patientSlug of patient) {\n const reverseEntry = INDEX.bySlug[patientSlug];\n if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]));\n }\n\n interactions.sort((a, b) => {\n const byTone = SEMANTIC_TONE_PRIORITY[b.tone] - SEMANTIC_TONE_PRIORITY[a.tone];\n if (byTone !== 0) return byTone;\n const bySeverity = SEVERITY_ORDER.indexOf(a.severity) - SEVERITY_ORDER.indexOf(b.severity);\n if (bySeverity !== 0) return bySeverity;\n return a.counterpartyName.localeCompare(b.counterpartyName);\n });\n\n const counts: Record = { ...EMPTY_COUNTS };\n for (const interaction of interactions) counts[interaction.tone] += 1;\n\n return {\n interactions,\n counts,\n highestTone: interactions[0]?.tone ?? null,\n unresolvedRowCount: entry.unresolvedRowCount,\n totalRowCount: entry.rows.length,\n dataAvailable: true,\n };\n}\n\n// ---------------------------------------------------------------------------\n// Composition with the physiology engine\n// ---------------------------------------------------------------------------\n\nexport type MedicationVerdict = {\n tone: SemanticTone;\n /** True when something prevented a complete assessment (grey, not green). */\n incomplete: boolean;\n interactionCount: number;\n considerationCount: number;\n unresolvedRowCount: number;\n};\n\n/**\n * Fold the physiology considerations and the interaction matches into the single\n * tone a result row's border wears.\n *\n * Precedence is the shared `SEMANTIC_TONE_PRIORITY` ladder (danger 6 → info 1),\n * with one override that is the whole point of the function: if either engine\n * reports something it could not assess, a would-be `success` degrades to\n\n> prompt-for-codex-medical-knowledge-base@0.1.0 medications:interactions\n> node scripts/run-tsx.mjs scripts/build-medication-interaction-index.ts\n\n[medication-interactions] wrote data/medication-interaction-index.json: 523 rows, 355 resolved, 168 unresolved, 149 medications carry an unresolved row.\n",{"_881":3663,"_860":861,"_883":867},{"_1063":3664,"_944":3655,"_45":3665,"_888":3666,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"9\",\"yield_time_ms\":30000,\"max_tokens\":20000}","fc_0e577ca7e8f114c6016a7cd00c02d481938a52311da979f27c",{"_893":867},{"_899":3668,"_881":3669,"_860":861,"_883":867},1786564618706,{"_923":3670,"_925":3671,"_927":3672,"_929":930,"_865":3673,"_932":35,"_45":3674,"_934":3675,"_936":937,"_874":117,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 medications:interactions\n> node scripts/run-tsx.mjs scripts/build-medication-interaction-index.ts\n\n[medication-interactions] wrote data/medication-interaction-index.json: 523 rows, 355 resolved, 168 unresolved, 149 medications carry an unresolved row.\n","/bin/bash -lc \"sed -n '1,35p' src/components/clinical-dashboard/patient-profile-panel.tsx; sed -n '150,250p' src/lib/medication-interactions.ts; git diff --check; npm run medications:interactions\"",[3676],10752,"exec-c175a978-3085-49bd-be76-32179e9e6f8a","55175",{"_925":3677,"_96":941},"sed -n '1,35p' src/components/clinical-dashboard/patient-profile-panel.tsx; sed -n '150,250p' src/lib/medication-interactions.ts; git diff --check; npm run medications:interactions",{"_881":3679,"_860":861,"_883":867},{"_944":3680,"_45":-5,"_888":3681,"_204":-5,"_947":3682,"_96":949},"call_rxjij7jWxRvDJNu4Ao5M3xsB",{"_893":867},"Script running with cell ID 9\nWall time 10.0 seconds\nOutput:\n",{"_881":3684,"_860":861,"_883":867},{"_944":3680,"_45":3685,"_972":3686,"_888":3687,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7ccffe5704819397b9b862587cbc0a","const r = await tools.exec_command({cmd:\"sed -n '1,35p' src/components/clinical-dashboard/patient-profile-panel.tsx; sed -n '150,250p' src/lib/medication-interactions.ts; git diff --check; npm run medications:interactions\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":30000,\"max_output_tokens\":20000});\ntext(r.output);\n",{"_893":867},{"_881":3689,"_860":861,"_883":867},{"_884":-5,"_905":3690,"_45":3691,"_888":3692,"_909":3693,"_96":911},"gAAAAABqfM_-u0osX6VtXbNwW43j7TCCKlFK3_yQ3U7t4GoltL7sYvcmENJ2MkaO_VWMqjqsbKg-y4aJQfJU00B689TTaVj4YR-zbYArnF65EGxwsZtaTpTBy04USJGuWaY6Q7JHlNOPlre7oGl7Jdrk8Y5uS3D04kB4sNfpI2lsea2j0PYFf4cGdVCc_b2o4dD4cFmdMDGt4sG4PPtWegS9RDU4JSPpwGTU26dHGcw1FUQVCbLDLnS13Xu7s0hTsLLTSmDKuIWigrcEw_53vOM9w79Jul_mDpOXDOjRipIAUNDuXyavTlgjQ1B9hG0xXO7tUV5crSbd7UsXWZgkSHji-u4-IAVUGLCDvb5y681sKJ7vMB68vUAjPYO1ix8S1Pq6UcqMc4RCjoO33xPT_2xwaH2N5EDTZ395ZoL2pgErmJJoVq_4enBNn0OlyO0RFUdqCe5sNU2ONwyqnhyDQ-8XlvWmUYGa6lQ4owfPg-VEGsXcrckmTWSyJCDDdCH6PCEYyqiC4kYG47uRIiHdP2Ua7SfJQKhWZM5W0AH-HoM6CjvdQgFaE4qRGhehMOY5vDyCWCDMsPeEDMh57C2gUoAe9L_EAQQTaQ6m9JxGsP_gL9ZlfTzCstOed4mCOC0lkj98XOEatn6HRYqpcZ_OuEVn0qXPuFG5c9qCK8gWdXYQt0rRBJEZbhnt1Vku1YZn2Mqq09axvjuhyAe0IcgYasethnX3J6DqcoTBM7N4xclyecjbPCrzFHKbKx80wp_TojhTSD7FnZJUzYPzUMmw093wCEnypYTzOchhPOGEfAO0H-4AO8KuzI3lF1cybuipa8pxxxpM_fH9A3WvPlb2x_CsxY8Q-vSpm5DPcOTp5ukegp4SF7ywQ1Mf1WmmjEY79c0jLdnaRlb2YA7ynz_InK_b2SSnCk66EpLrw2n0jiptWJO8gm97uYMmeS2yNCYevq6sYx7Rww2s","rs_0e577ca7e8f114c6016a7ccffd8a6081938d70d7bd48aee75d",{"_893":867},[3694],{"_49":3695,"_96":914},"**Verifying import statement format**",{"_899":3697,"_881":3698,"_860":861,"_883":867},1786564606359,{"_884":3699,"_45":3691,"_909":3700,"_96":911},[],[3695],{"_881":3702,"_860":861,"_883":867},{"_944":3703,"_45":-5,"_888":3704,"_204":-5,"_947":3705,"_96":949},"call_VkEAT09ALuJllo8MEQZNoDa0",{"_893":867},{"_355":3706,"_951":-5},[3707,3708],{"_49":3285,"_96":955},{"_49":1103,"_96":955},{"_899":3710,"_881":3711,"_860":861,"_883":867},1786564604266,{"_1107":3712,"_45":3713,"_874":117,"_96":1110},[3714,3715,3716,3717,3718],"exec-d09c53f5-1579-4e7a-857d-150bc5cbf0cd",{"_366":3728,"_9":3729,"_173":1114},{"_366":3725,"_9":3726,"_173":3727},{"_366":3723,"_9":3724,"_173":2777},{"_366":3721,"_9":3722,"_173":3331},{"_366":3719,"_9":3720,"_173":3457},"@@ -57,2 +57,4 @@\n totalRowCount: number;\n+ /** False when the catalogue names the medication but the index has no entry. */\n+ dataAvailable: boolean;\n };\n@@ -167,2 +169,3 @@\n if (!entry) {\n+ const dataAvailable = !Object.hasOwn(INDEX.names, slug);\n return {\n@@ -171,4 +174,5 @@\n highestTone: null,\n- unresolvedRowCount: 0,\n+ unresolvedRowCount: dataAvailable ? 0 : 1,\n totalRowCount: 0,\n+ dataAvailable,\n };\n@@ -180,8 +184,9 @@\n \n- for (const row of entry.rows) {\n+ const addMatches = (sourceSlug: string, rows: IndexRow[], counterpartySlugs: ReadonlySet) => {\n+ for (const row of rows) {\n for (const counterpartySlug of row.counterparties) {\n- if (!patient.has(counterpartySlug)) continue;\n+ if (!counterpartySlugs.has(counterpartySlug)) continue;\n const severity = normaliseSeverity(row.severity);\n interactions.push({\n- id: `${slug}:${row.rowIndex}:${counterpartySlug}`,\n+ id: `${sourceSlug}:${row.rowIndex}:${counterpartySlug}`,\n counterpartySlug,\n@@ -192,5 +197,12 @@\n kind: row.rowKey,\n- note: sourceRows[row.rowIndex]?.val ?? \"\",\n+ note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \"\") : \"\",\n });\n }\n+ }\n+ };\n+\n+ addMatches(slug, entry.rows, patient);\n+ for (const patientSlug of patient) {\n+ const reverseEntry = INDEX.bySlug[patientSlug];\n+ if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]));\n }\n@@ -214,2 +226,3 @@\n totalRowCount: entry.rows.length,\n+ dataAvailable: true,\n };\n",{"_1115":-5,"_96":1116},"@@ -67,2 +67,4 @@\n select?: CatalogueSelector;\n+ /** Targets are useful, but the class is broader than the enumerated subset. */\n+ incompleteEnumeration?: boolean;\n /** Why this term is external/nonDrug/mechanism — kept for auditability. */\n@@ -354,6 +356,8 @@\n surfaces: [\"cns depressants\", \"cns depressant\", \"sedatives\", \"sedative\", \"sedating drugs\"],\n- kind: \"mechanism\",\n+ kind: \"catalogue\",\n+ select: { classes: [\"Benzodiazepine\"] },\n+ incompleteEnumeration: true,\n note:\n- \"Deliberately unenumerable: the surface spans benzodiazepines, opioids, \" +\n- \"antihistamines, alcohol and more. Rows that mean a specific class name it.\",\n+ \"Partially enumerated to known benzodiazepines, while remaining unresolved because \" +\n+ \"the surface also spans opioids, antihistamines, alcohol and more.\",\n },\n",{"_1115":-5,"_96":1116},"@@ -3,3 +3,3 @@\n import { Eraser, Plus, UserRound, X } from \"lucide-react\";\n-import { useId, useState } from \"react\";\n+import { useEffect, useId, useState } from \"react\";\n \n@@ -129,7 +129,5 @@\n // Clearing the profile should empty the search box too.\n- const [syncedNonce, setSyncedNonce] = useState(resetNonce);\n- if (syncedNonce !== resetNonce) {\n- setSyncedNonce(resetNonce);\n+ useEffect(() => {\n setTerm(\"\");\n- }\n+ }, [resetNonce]);\n \n",{"_1115":-5,"_96":1116},"@@ -34,4 +34,15 @@\n const phoneMediaQuery = window.matchMedia(\"(max-width: 639px)\");\n+ let observer: MutationObserver | null = null;\n const sync = () => {\n- setHost(phoneMediaQuery.matches ? document.getElementById(patientDetailsAddonSlotId) : null);\n+ if (!phoneMediaQuery.matches) {\n+ observer?.disconnect();\n+ observer = null;\n+ setHost(null);\n+ return;\n+ }\n+ setHost(document.getElementById(patientDetailsAddonSlotId));\n+ if (!observer) {\n+ observer = new MutationObserver(sync);\n+ observer.observe(document.body, { childList: true, subtree: true });\n+ }\n };\n@@ -41,7 +52,5 @@\n // so watch for it rather than assuming it exists on first paint.\n- const observer = new MutationObserver(sync);\n- observer.observe(document.body, { childList: true, subtree: true });\n return () => {\n phoneMediaQuery.removeEventListener(\"change\", sync);\n- observer.disconnect();\n+ observer?.disconnect();\n };\n",{"_1115":-5,"_96":1116},"/workspace/Database/src/components/clinical-dashboard/patient-details-dock-action.tsx","@@ -127,3 +127,5 @@\n /**\n- * The counterparty segment is the FIRST sentence after the severity token.\n+ * Counterparty clauses after the severity token, excluding explicit mitigation\n+ * advice. Interaction rows regularly name additional mechanisms in later\n+ * sentences, so truncating at sentence one creates false negatives.\n *\n@@ -139,4 +141,6 @@\n const body = (match ? match[2] : value).replace(/\\*\\*/g, \"\").trim();\n- const [first = \"\"] = body.split(/(?<=[.;])\\s+/);\n- return { severityToken, segment: first };\n+ const clauses = body.split(/(?<=[.;])\\s+/).filter((clause) => {\n+ return !/^(?:cover|monitor|consider|check|use|avoid|prefer|give|dose|reduce|increase)\\b/i.test(clause);\n+ });\n+ return { severityToken, segment: clauses.join(\" \") };\n }\n@@ -230,7 +234,4 @@\n // resolved: it could include catalogue drugs we have not enumerated.\n- const onlyMechanism =\n- termIds.size > 0 &&\n- counterparties.size === 0 &&\n- Array.from(termIds).every((id) => termKind(id) === \"mechanism\");\n- const resolved = sawClassifiableTerm && !onlyMechanism;\n+ const hasUnresolvedMechanism = Array.from(termIds).some((id) => termIsIncomplete(id));\n+ const resolved = sawClassifiableTerm && !hasUnresolvedMechanism;\n \n@@ -256,4 +257,5 @@\n \n- function termKind(id: string): string {\n- return INTERACTION_LEXICON.find((term) => term.id === id)?.kind ?? \"mechanism\";\n+ function termIsIncomplete(id: string): boolean {\n+ const term = INTERACTION_LEXICON.find((candidate) => candidate.id === id);\n+ return !term || term.kind === \"mechanism\" || term.incompleteEnumeration === true;\n }\n@@ -292,3 +294,9 @@\n const current = readFileSync(outputPath, \"utf8\");\n- if (current !== serialised) {\n+ let currentIndex: unknown;\n+ try {\n+ currentIndex = JSON.parse(current);\n+ } catch {\n+ currentIndex = null;\n+ }\n+ if (JSON.stringify(currentIndex) !== JSON.stringify(index)) {\n console.error(\n",{"_1115":-5,"_96":1116},{"_881":3731,"_860":861,"_883":867},{"_944":3703,"_45":3732,"_972":3733,"_888":3734,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7ccfde36a481939c90289e8d142ffe","const patch = \"*** Begin Patch\\n*** Update File: /workspace/Database/src/lib/medication-interaction-lexicon.ts\\n@@\\n export type LexiconTerm = {\\n@@\\n select?: CatalogueSelector;\\n+ /** Targets are useful, but the class is broader than the enumerated subset. */\\n+ incompleteEnumeration?: boolean;\\n@@\\n {\\n id: \\\"cns-depressants\\\",\\n surfaces: [\\\"cns depressants\\\", \\\"cns depressant\\\", \\\"sedatives\\\", \\\"sedative\\\", \\\"sedating drugs\\\"],\\n- kind: \\\"mechanism\\\",\\n+ kind: \\\"catalogue\\\",\\n+ select: { classes: [\\\"Benzodiazepine\\\"] },\\n+ incompleteEnumeration: true,\\n note:\\n- \\\"Deliberately unenumerable: the surface spans benzodiazepines, opioids, \\\" +\\n- \\\"antihistamines, alcohol and more. Rows that mean a specific class name it.\\\",\\n+ \\\"Partially enumerated to known benzodiazepines, while remaining unresolved because \\\" +\\n+ \\\"the surface also spans opioids, antihistamines, alcohol and more.\\\",\\n*** Update File: /workspace/Database/scripts/build-medication-interaction-index.ts\\n@@\\n- * The counterparty segment is the FIRST sentence after the severity token.\\n+ * Counterparty clauses after the severity token, excluding explicit mitigation\\n+ * advice. Interaction rows regularly name additional mechanisms in later\\n+ * sentences, so truncating at sentence one creates false negatives.\\n@@\\n-function counterpartySegment(value: string): { severityToken: string | null; segment: string } {\\n+function counterpartySegment(value: string): { severityToken: string | null; segment: string } {\\n@@\\n- const [first = \\\"\\\"] = body.split(/(?<=[.;])\\\\s+/);\\n- return { severityToken, segment: first };\\n+ const clauses = body.split(/(?<=[.;])\\\\s+/).filter((clause) => {\\n+ return !/^(?:cover|monitor|consider|check|use|avoid|prefer|give|dose|reduce|increase)\\\\b/i.test(clause);\\n+ });\\n+ return { severityToken, segment: clauses.join(\\\" \\\") };\\n@@\\n- const onlyMechanism =\\n- termIds.size > 0 &&\\n- counterparties.size === 0 &&\\n- Array.from(termIds).every((id) => termKind(id) === \\\"mechanism\\\");\\n- const resolved = sawClassifiableTerm && !onlyMechanism;\\n+ const hasUnresolvedMechanism = Array.from(termIds).some((id) => termIsIncomplete(id));\\n+ const resolved = sawClassifiableTerm && !hasUnresolvedMechanism;\\n@@\\n- function termKind(id: string): string {\\n- return INTERACTION_LEXICON.find((term) => term.id === id)?.kind ?? \\\"mechanism\\\";\\n+ function termIsIncomplete(id: string): boolean {\\n+ const term = INTERACTION_LEXICON.find((candidate) => candidate.id === id);\\n+ return !term || term.kind === \\\"mechanism\\\" || term.incompleteEnumeration === true;\\n@@\\n if (checkOnly) {\\n const current = readFileSync(outputPath, \\\"utf8\\\");\\n- if (current !== serialised) {\\n+ let currentIndex: unknown;\\n+ try {\\n+ currentIndex = JSON.parse(current);\\n+ } catch {\\n+ currentIndex = null;\\n+ }\\n+ if (JSON.stringify(currentIndex) !== JSON.stringify(index)) {\\n*** Update File: /workspace/Database/src/lib/medication-interactions.ts\\n@@\\n export type MedicationInteractionResult = {\\n@@\\n totalRowCount: number;\\n+ /** False when the catalogue names the medication but the index has no entry. */\\n+ dataAvailable: boolean;\\n@@\\n if (!entry) {\\n+ const dataAvailable = !Object.hasOwn(INDEX.names, slug);\\n return {\\n@@\\n- unresolvedRowCount: 0,\\n+ unresolvedRowCount: dataAvailable ? 0 : 1,\\n totalRowCount: 0,\\n+ dataAvailable,\\n@@\\n- for (const row of entry.rows) {\\n+ const addMatches = (sourceSlug: string, rows: IndexRow[], counterpartySlugs: ReadonlySet) => {\\n+ for (const row of rows) {\\n for (const counterpartySlug of row.counterparties) {\\n- if (!patient.has(counterpartySlug)) continue;\\n+ if (!counterpartySlugs.has(counterpartySlug)) continue;\\n@@\\n- id: `${slug}:${row.rowIndex}:${counterpartySlug}`,\\n+ id: `${sourceSlug}:${row.rowIndex}:${counterpartySlug}`,\\n@@\\n- note: sourceRows[row.rowIndex]?.val ?? \\\"\\\",\\n+ note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \\\"\\\") : \\\"\\\",\\n });\\n }\\n- }\\n+ }\\n+ };\\n+\\n+ addMatches(slug, entry.rows, patient);\\n+ for (const patientSlug of patient) {\\n+ const reverseEntry = INDEX.bySlug[patientSlug];\\n+ if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]));\\n+ }\\n@@\\n totalRowCount: entry.rows.length,\\n+ dataAvailable: true,\\n*** Update File: /workspace/Database/src/components/clinical-dashboard/patient-profile-panel.tsx\\n@@\\n-import { useId, useState } from \\\"react\\\";\\n+import { useEffect, useId, useState } from \\\"react\\\";\\n@@\\n- const [syncedNonce, setSyncedNonce] = useState(resetNonce);\\n- if (syncedNonce !== resetNonce) {\\n- setSyncedNonce(resetNonce);\\n+ useEffect(() => {\\n setTerm(\\\"\\\");\\n- }\\n+ }, [resetNonce]);\\n*** Update File: /workspace/Database/src/components/clinical-dashboard/patient-details-dock-action.tsx\\n@@\\n const phoneMediaQuery = window.matchMedia(\\\"(max-width: 639px)\\\");\\n+ let observer: MutationObserver | null = null;\\n const sync = () => {\\n- setHost(phoneMediaQuery.matches ? document.getElementById(patientDetailsAddonSlotId) : null);\\n+ if (!phoneMediaQuery.matches) {\\n+ observer?.disconnect();\\n+ observer = null;\\n+ setHost(null);\\n+ return;\\n+ }\\n+ setHost(document.getElementById(patientDetailsAddonSlotId));\\n+ if (!observer) {\\n+ observer = new MutationObserver(sync);\\n+ observer.observe(document.body, { childList: true, subtree: true });\\n+ }\\n@@\\n- const observer = new MutationObserver(sync);\\n- observer.observe(document.body, { childList: true, subtree: true });\\n return () => {\\n@@\\n- observer.disconnect();\\n+ observer?.disconnect();\\n*** End Patch\";\ntext(await tools.apply_patch(patch));\n",{"_893":867},{"_881":3736,"_860":861,"_883":867},{"_884":-5,"_905":3737,"_45":3738,"_888":3739,"_909":3740,"_96":911},"gAAAAABqfM_e76zYcoRlkZiLK514yp7FXwkU8RRaf1X5vfwiU7SJF1xruZOnGpSg_SwbVy-hVWmRoY7G2FZOhdHshZ20hDg_aZ4HGJ_yAfcD0yilkgJgJw5-e4OBiCLHS2eA_ZOhlbbzTT4xlVftc_tnfqwDLYD8rwTqtoWBoxba2NSMSYkJ6vJEBncd59mpCL-akzXlw-zAT-PeZnEBFQ-Pju8pl_yTg2vBsbgs6eJt8bU3kaEBB0BkafFq6i7V8SPmR5J-N0MeBv6C0VcyWjQ8BK3O1calhjcENvpXwDXWAHxKF3eP55pDkvuMsaHHN8cQgm21A6JkZ5veO0zdV09SpJ6Lj_nZ4a7iH2legQB3Iu7kFGI1wsXaanoj8ok0W3rsYEorH_9W0jdP5c3tZwHuzlCdcuHGyU3GxqClSpyYvI8kmaFUYHYXB-oWsIk9cRAy74qH8zjM0FKPC4iPzOXLsHE7PS-IzcXnuQwTdVfrD3PbtijGevasRYG_jbBydf3zp2u3s-wwcLwzCjnYVliPccHEDdD22AQ2ognsI5-xPtvCzLlh1-ZHZqyKtQoIKWkMB38snvE5Ref6xyWXJGIjlHlSkV-XIexDdoPF7onTk_mqkQ9xUzouKWUAY8HkJnjiMkfOKll57DR_rAskRmvzE08QrIdGOHuE7pfIFKAA3LY9itF0QrholzcSVFWv_SX-nTfAeg6nqVrBuh1_woBThiwIHORJa7CbzY88wFkXEnvM9Vm9m1FjIAyAfKbgOURizJoRA8L84Ol1EqHk5iVbKz4GfT_tChEldvMGZd57McnSrWbKbkCbGJBy24wvZhdcmRXq0lifoGLEk5clGunO5_bWqPCZdueH8EyYZL8-5RnPy3pskTREWzowIGN0_Z4jAW04SIGGNjMclSNRwnpNc7z-Neigc15SMSotT3CRXVDQj8YvshcG80zVzrNJiV21PgXDr_KROxAAiGGmF95KhyxopIaT7zt6iRQ2r9g32IgRZ11WQ97LRRd16ViQztUHw2KliIWp_3hKtFD-Be2cWUIH_eCLaAFliTAibau4B5YFwCeox9gURc5TIW_b5rHETndNGMw7hZOQhKSEeJcvMh_UGySmZ-dvPbqh3l6EaELkNh4i6-UoJM4Q9OwfVjB7Bbg3HC7tPgS1MyqjgSnH_PbqwCbiJM9QvfkDqwmPSRJguzHUs-cer3n8V9sZmN6bKwjK3sfNmsML4V4W1Z1K-3odevMwGnkGmi4BBsttQiMTzVyiyLkwq0RZl3FzD9ZtCdxhw1niAjBeWj_D4Fy2GPhVpo1V29AyIihJejXCNh1ufyVqaUYRLjbaZW3Z08HbuhDuBRicqE5t4Zj1lNwqrW17nlEdP34jo6RxdfXgDk0DZ3pGlsmsL0a4aAqCTAs0MCLswXvgUnKDYwvlqaV-b-KrofEwz4L0eYdYh_YCVBLYhDUFMI9lWJ0W8s21l2vWKOfToBh6k5Xl22vRlsx77dg6ADi87xllLe8oaW4clJcX9uA7ByObCVM_6jdLVMnlleRRk9PNLVptv08MLNOodgzXE-wG5nmN50_oEKXJO3ISS4D-C0JHNieCbUkJ18-yxmm_xop66kOybF_evSjHfBeyxV6ubcBLIAACR5Vrw6FtTHDhwcgmoSYwiCuq3E2z1F1uTwwAyb0Ri8JXPC--5nCGovLKaRC8dEz8oUCqBCOR5YT7JdJX_beI-TSMFGwN3zHF1YJ6m4jKQIX57udQ3KgZJBFNaIV-3FdCM_xpcmI82AUR-g3eq8P647qFiCxyM9xmQsQMZXDgsT2DB1P2qY2f7WzctSKExesqrqm4nahS_an3pMx9E4EHiD1S--SK89eEhKsbjJoP0oscX7_F2-wTQZFXTqHxmWsY8uDvTWxNbaB8Ft-OC1ywI-PRdXm50kGH8JErR6D5-UMjH5WIyRMDRWha6VaWq0fHQPo8ddOw_EUwQ7pCCzYHB7tS2jdRhjJNezKvkS9qOVFSJ5PbfWJDALLvMelPf88XF5nOLx8Mgh1SNi6PvL_S4sDRyTuW0sLcD_6KzvrN_8S2YGTPo6W_98GEAWCMSNF2m4WniHp4j9_kYCEaAuEsKb7-XDj2OAaA0D2j0R-Z-3xFRnfbFsqG-Km11GSGGSaI44LQWwLxYADtolrTiR--Zy15BQ7pU4nH--X9d9VGYgNlEiF63SSSQFU-LyknPV4SSFcoQaDe5e4ZCQElJIiIo73Wt1GNLPablBNU6CjlW-BnrR402BiwJahiP29sS3e5fNSfb23Cs1JH6FWsRdhyBH1mAhUM7gw48SPVFU0HOTJFolYJ9EX_335Q1rrv2SNRw-Q8b0iyPOqcy2Dkmz_N40maLEozGmKMYiuEZ64YhYgUqDsLG1Vos2v-q0k9WJxG0HeNPsPMnJ3ylNbkjTo5o--E8hD0k_csBtsOBrjMqmlcboaHb4hSTmRY21DX271N3cJn2T2n5iujyMePziZQ-HDyqV1LAw_swoZdnIYgP8WKdcz0rM0j0KzyIWodmD9A0ikLVoZHvsgzeCQMZ1j8RAoU4HqAch4Y_yGsDKzasEcTqddJ_Cc3vl_yPUYxB6OSjJhEIrYjuN8SPLs_PcI6CsuiletQzKlwyY1ugaSa7ksFW-1V9MzVcUJs3Yn6w3kBMUFMqrpU-jhO_k5FbUq6pET4RfevjS1f_ZIgZcecDQ4pBtO-tqGVcc5bGHVardpbZMswzBM259_MYjAempfZayzWFHetk4Ub-7nzTly4u-bFS2Nd6dtapSzLiR2CaDPoFmy5yCzPcOdxXFt6S7aRCoharNRORME6-cQFGjtS8KqGZNXjh8vPCCaDNr84C-LoUA6OOiIqRx3XkKUG4K0NztyoFlLp89PQSXAEGaCzg2WUPR_S-m7kkXLgiZswpVSB9rn3uzb_s4SKsl-DN8_HGeke8nVBSZZvzmkozbxSii4KlUxjGU4Uj7CD-VIWomRQOegYG6nNxDvI7PETc1_Ttxz6gCxzbE8DUHRKSL0nsGM8fdQYVSDtegxuGYYNI_3gwmyvqyjnLJLhtHki32Dei-0D1eBiegUQb4_qb7CUQTTxbeAcQl6uc58IWWoWMxbIB3iAOJRX28wS4UW6BfBFkbVD4FLbBmckrygxpt0RiT6UpifznMBXo6j-ANozrYUzDPXJZYvMmiwZ6bSaDJJOnEBvyKWGB-z-tyCYQqwqaAukkjWwoLsgD7bvxGvqbvV5xs47WzK_ZTeliQY=","rs_0e577ca7e8f114c6016a7ccfd5c58081938ab8ca5f117c78ec",{"_893":867},[3741,3742],{"_49":3744,"_96":914},{"_49":3743,"_96":914},"**Implementing unresolved and incomplete flags**","**Refining CNS depressants catalog structure**",{"_899":3746,"_881":3747,"_860":861,"_883":867},1786564574204,{"_884":3748,"_45":3738,"_909":3749,"_96":911},[],[3744,3743],{"_881":3751,"_860":861,"_883":867},{"_944":3752,"_45":-5,"_888":3753,"_204":-5,"_947":3754,"_96":949},"call_cmbthGg5VR6kvcsS2nWWCAzy",{"_893":867},{"_355":3755,"_951":-5},[3756,3757],{"_49":1010,"_96":955},{"_49":3758,"_96":955}," \"cyp1a2 inhibitors\",\n \"cyp2c19 inhibitors\",\n ],\n kind: \"mechanism\",\n note: \"Enumerating inhibitors needs pharmacokinetic data the catalogue does not carry.\",\n },\n {\n id: \"cyp-inducers\",\n surfaces: [\"cyp inducers\", \"cyp inducer\", \"strong cyp inducers\", \"cyp3a4 inducers\", \"enzyme inducers\"],\n kind: \"mechanism\",\n note: \"See cyp-inhibitors.\",\n },\n {\n id: \"cyp-substrates\",\n surfaces: [\"cyp substrates\", \"cyp2d6 substrates\", \"cyp3a4 substrates\", \"narrow therapeutic index drugs\"],\n kind: \"mechanism\",\n },\n {\n id: \"pgp\",\n surfaces: [\"p-gp\", \"p-gp inhibitors\", \"p-glycoprotein\", \"oatp\"],\n kind: \"mechanism\",\n },\n {\n id: \"cns-depressants\",\n surfaces: [\"cns depressants\", \"cns depressant\", \"sedatives\", \"sedative\", \"sedating drugs\"],\n kind: \"mechanism\",\n note:\n \"Deliberately unenumerable: the surface spans benzodiazepines, opioids, \" +\n \"antihistamines, alcohol and more. Rows that mean a specific class name it.\",\n },\n {\n id: \"qtc-prolonging\",\n surfaces: [\n \"qtc prolonging drugs\",\n \"qt prolonging drugs\",\n \"concurrent qtc prolonging drugs\",\n \"qt-prolonging agents\",\n ],\n kind: \"mechanism\",\n note: \"The catalogue carries QTc risk per drug but not a curated interacting set.\",\n },\n {\n id: \"serotonergic\",\n surfaces: [\"serotonergic drugs\", \"serotonergic agents\", \"other serotonergics\"],\n kind: \"mechanism\",\n },\n];\n\nexport const INTERACTION_LEXICON: readonly LexiconTerm[] = Object.freeze([...CATALOGUE_TERMS, ...NON_CATALOGUE_TERMS]);\n\n/** Surfaces sorted longest-first so \"thiazide diuretics\" wins over \"diuretics\". */\nexport const LEXICON_SURFACES_BY_LENGTH: readonly { surface: string; term: LexiconTerm }[] = Object.freeze(\n INTERACTION_LEXICON.flatMap((term) =>\n term.surfaces.map((surface) => ({ surface: surface.toLowerCase(), term })),\n ).sort((a, b) => b.surface.length - a.surface.length),\n);\n\n/** Resolve a catalogue selector against the medication catalogue. */\nexport function selectCatalogueSlugs(select: CatalogueSelector, records: readonly MedicationRecord[]): string[] {\n const deny = new Set(select.denySlugs ?? []);\n const matched = new Set();\nnode_modules/next/dist/docs/01-app/02-guides/single-page-applications.md:540:This can be useful for third-party libraries that rely on browser APIs like `window` or `document`. You can also add a `useEffect` that checks for the existence of these APIs, and if they do not exist, return `null` or a loading state which would be prerendered.\nnode_modules/next/dist/docs/01-app/02-guides/progressive-web-apps.md:102:import { useState, useEffect } from 'react'\nnode_modules/next/dist/docs/01-app/02-guides/progressive-web-apps.md:122:import { useState, useEffect } from 'react'\nnode_modules/next/dist/docs/01-app/02-guides/progressive-web-apps.md:151: useEffect(() => {\nnode_modules/next/dist/docs/01-app/02-guides/progressive-web-apps.md:232: useEffect(() => {\nnode_modules/next/dist/docs/01-app/02-guides/progressive-web-apps.md:313: useEffect(() => {\nnode_modules/next/dist/docs/01-app/02-guides/progressive-web-apps.md:363: useEffect(() => {\nnode_modules/next/dist/docs/01-app/02-guides/prefetching.md:166:import { useEffect } from 'react'\nnode_modules/next/dist/docs/01-app/02-guides/prefetching.md:177: useEffect(() => {\nnode_modules/next/dist/docs/01-app/02-guides/prefetching.md:231:To avoid this, move side-effects to a `useEffect` hook or a Server Action triggered from a Client Component.\n
\n updateField(\"scr\", value)}\n testId=\"patient-scr\"\n min={scrBounds.min}\n max={scrBounds.max}\n />\n
\n
\n \n Creatinine unit\n \n \n
\n
\n\n
\n \n Hepatic impairment\n \n updateField(\"hepatic\", value === \"none\" ? null : value)}\n options={HEPATIC_OPTIONS}\n layout=\"fit\"\n />\n
\n\n \n\n
\n Allergies\n
\n {ALLERGY_OPTIONS.map((option) => {\n const active = allergies.has(option.value);\n return (\n toggleAllergy(option.value)}\n data-testid={`patient-allergy-${option.value}`}\n className={cn(segmentBase, active ? segmentActive : segmentIdle)}\n >\n {option.label}\n \n );\n })}\n
\n
\n\n
\n \n updateField(\"pregnant\", !profile.pregnant)}\n aria-label=\"Pregnancy\"\n />\n Pregnancy\n \n \n",{"_899":3760,"_881":3761,"_860":861,"_883":867},1786564564327,{"_923":3758,"_925":3762,"_927":3763,"_929":930,"_865":35,"_932":35,"_45":3764,"_934":3765,"_936":937,"_874":117,"_96":938},"/bin/bash -lc \"sed -n '330,390p' src/lib/medication-interaction-lexicon.ts; rg -n 'useEffect' node_modules/next/dist/docs/01-app | head -10; sed -n '300,370p' src/components/clinical-dashboard/patient-profile-panel.tsx\"",[3766,3767,3768],"exec-059c8d2d-7c6e-4ff6-bdfb-16afeffb7a51","23467",{"_925":3776,"_204":3777,"_173":3331,"_96":3296},{"_925":3771,"_173":3772,"_3773":3774,"_96":3775},{"_925":3769,"_204":3770,"_173":2777,"_96":3296},"sed -n '300,370p' src/components/clinical-dashboard/patient-profile-panel.tsx","patient-profile-panel.tsx","rg -n useEffect node_modules/next/dist/docs/01-app","01-app","query","useEffect","search","sed -n '330,390p' src/lib/medication-interaction-lexicon.ts","medication-interaction-lexicon.ts",{"_881":3779,"_860":861,"_883":867},{"_944":3752,"_45":3780,"_972":3781,"_888":3782,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7ccfd278cc8193949b5131a2761410","const r = await tools.exec_command({cmd:\"sed -n '330,390p' src/lib/medication-interaction-lexicon.ts; rg -n 'useEffect' node_modules/next/dist/docs/01-app | head -10; sed -n '300,370p' src/components/clinical-dashboard/patient-profile-panel.tsx\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":8000});\ntext(r.output);\n",{"_893":867},{"_881":3784,"_860":861,"_883":867},{"_884":-5,"_905":3785,"_45":3786,"_888":3787,"_909":3788,"_96":911},"gAAAAABqfM_Slc80A9IZGbxi84tEGFOn1PHnFKxbvvm461LcnMwQSU2y3NISwS8fAZFyzmLtRoD_crpP2R6l1Vq0vP_hYHy0Y3rMY1PJma2IVrgD2VhKhd_g1y02uEfQGe74NkTERf1QbA72qyOi3qCG8LxibAUsgkQEkxtUXvoA6eZW5oa_fx74XMnRmuZnObEqnlpzdi2q4qtGnZNfP1o7Y9Tb8lysLmbeimoyDOGkVmgGGEC7Rle_0tdMIwpnYBshaO5awYUkxPLRz0icxIsaLjP10kgMYjnnyhWYF4hM4Kh_zIljIBgJDXKGwmDwM9N6UU6xCGLaADtWpLsF1QbIumBkEurg2M38PHYRqVk8Qo-2QOJSxMtTTo427C1fk0syjQuyzEhDN09CCUU63z4rF-kBzRiQLgNxoJc2480OBji8zw9cYv3IQbzKVNUka_5coHzCyuATuLfGQDbI_H4KQ1uyO9BIOiDH_opIXpNn1roQJU1zy4kc6csJxQHaUqYMDg79PmljBiKw3L6v1LREHOMPQ9u0OVrNNYoBIyBMkAG_VAqYyybBZR95dq-y-aLOrxU7SpXk4jw6NZ1yTaVfnP-C2OWrY6AQBoevfs1uyEOKebidlXP8GAQtwQK9gIkQeffBKftrB6qyHb7ZVaUCnp8CRFXTU7SyCfjFsBuOrMS8lsfKApl45aYDPcQvO9oGh6ZsMC3KezpjxWSTjTZPpXkExKkgWUjhiiWPiZK0lnEMhqRVADOuJauGiKt5iET9E4j7fvJhTxawQsWAFA30-8LQcKdBNgpd38h7Jo1Bj5frt72JmtlSnGON48BOlhVoOH-rtmWIZk3HcAXwtXjiwH6Kjpj_WKvfabNXbJqJOSwmf-qFZj_78-Z8vcuTnWwmiRi0fOkfEuZb2riU-ESd-FUBEjUn0PAqqQDKuTO_FHNz39OWcNrUJDCNQyMP2C4lFa9jEHa_","rs_0e577ca7e8f114c6016a7ccfd1e9ac8193bb7d1ded0ac2daa6",{"_893":867},[3789],{"_49":3790,"_96":914},"**Identifying CNS catalogue**",{"_899":3792,"_881":3793,"_860":861,"_883":867},1786564562476,{"_884":3794,"_45":3786,"_909":3795,"_96":911},[],[3790],{"_881":3797,"_860":861,"_883":867},{"_944":3798,"_45":-5,"_888":3799,"_204":-5,"_947":3800,"_96":949},"call_B2CNfKmFb1UibV13GtA2Sprf",{"_893":867},{"_355":3801,"_951":-5},[3802,3803],{"_49":1010,"_96":955},{"_49":3804,"_96":955},"353: id: \"cns-depressants\",\n354: surfaces: [\"cns depressants\", \"cns depressant\", \"sedatives\", \"sedative\", \"sedating drugs\"],\n366: \"qt-prolonging agents\",\n{\n \"name\": \"prompt-for-codex-medical-knowledge-base\",\n \"version\": \"0.1.0\",\n \"private\": true,\n \"license\": \"UNLICENSED\",\n \"packageManager\": \"npm@11.17.0\",\n \"engines\": {\n \"node\": \">=24.15.0 <25\",\n \"npm\": \"11.x\"\n },\n \"scripts\": {\n \"dev\": \"node scripts/dev-free-port.mjs\",\n \"preinstall\": \"node scripts/check-node-engine.cjs\",\n \"postinstall\": \"node scripts/check-installed-lock-parity.mjs --write-stamp && node scripts/install-git-hooks.mjs\",\n \"hooks:install\": \"node scripts/install-git-hooks.mjs\",\n \"setup:codex-worktree\": \"node scripts/setup-codex-worktree.mjs\",\n \"guard:push\": \"node scripts/guard-push.mjs\",\n \"guard:push:self-test\": \"node scripts/guard-push.mjs --self-test\",\n \"check:base-freshness\": \"node scripts/check-base-freshness.mjs\",\n \"ensure\": \"node scripts/ensure-local-server.mjs\",\n \"build\": \"node scripts/run-heavy.mjs --npm-script build:internal\",\n \"build:internal\": \"node scripts/guard-next-build.mjs && npm run check:upload-limit-parity && node --max-old-space-size=8192 ./node_modules/next/dist/bin/next build --webpack && node scripts/check-client-bundle-secrets.mjs\",\n \"build:analyze\": \"node scripts/build-analyze.mjs\",\n \"generate:worker-python-lock\": \"node scripts/generate-worker-python-lock.mjs\",\n \"generate:worker-python-cloud-lock\": \"node scripts/generate-worker-python-lock.mjs --target cloud\",\n \"check:worker-python-lock\": 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--no-error-on-unmatched-pattern --cache --cache-location node_modules/.cache/eslint/\",\n \"lint:changed:internal\": \"node --max-old-space-size=8192 ./node_modules/eslint/bin/eslint.js\",\n \"typecheck\": \"node scripts/run-heavy.mjs --npm-script typecheck:internal\",\n \"typecheck:internal\": \"node ./node_modules/typescript/bin/tsc -p tsconfig.typecheck.json --noEmit\",\n \"typecheck:source\": \"node scripts/run-heavy.mjs --npm-script typecheck:source:internal\",\n \"typecheck:source:internal\": \"node ./node_modules/typescript/bin/tsc -p tsconfig.typecheck.json --noEmit\",\n \"test\": \"node scripts/run-vitest.mjs run --reporter=dot\",\n \"test:focused\": \"node scripts/test-focused.mjs\",\n \"test:live\": \"node scripts/run-live-tests.mjs\",\n \"test:coverage\": \"node scripts/run-vitest.mjs run --coverage\",\n \"test:coverage:node\": \"node scripts/run-vitest.mjs run --project=node --coverage\",\n \"test:coverage:ui\": \"node scripts/run-vitest.mjs run --project=jsdom --coverage\",\n \"test:ci-workflows\": \"node scripts/run-vitest.mjs run tests/ci-cache-safety.test.ts tests/authenticated-live-workflow.test.ts tests/codex-autofix-workflow.test.ts tests/eval-canary-workflow.test.ts tests/container-ci-contract.test.ts tests/test-runner-safety.test.ts tests/installed-lock-parity.test.ts tests/railway-config.test.ts tests/ingestion-autopilot.test.ts tests/ingestion-autopilot-workflow.test.ts tests/check-lighthouse-budget.test.ts tests/live-web-vitals-inputs.test.ts tests/offline-release-profile.test.ts\",\n \"test:e2e\": \"node scripts/run-playwright.mjs\",\n \"test:e2e:all\": \"node scripts/run-playwright.mjs\",\n \"test:e2e:accessibility\": \"node scripts/run-playwright.mjs tests/ui-accessibility.spec.ts --project=chromium\",\n \"test:e2e:pwa\": \"node scripts/run-playwright.mjs tests/ui-pwa.spec.ts --project=chromium\",\n \"test:e2e:critical\": \"node scripts/run-playwright.mjs --project=chromium --grep @critical\",\n \"test:e2e:regression\": \"node scripts/run-playwright.mjs --project=chromium --grep-invert \\\"@critical|@quarantine|@mockup\\\"\",\n \"test:e2e:pr\": \"node scripts/run-playwright.mjs --project=chromium --grep-invert \\\"@quarantine|@mockup\\\"\",\n \"test:e2e:pr:shard\": \"node scripts/playwright-pr-shards.mjs\",\n \"check:playwright-pr-shards\": \"node scripts/playwright-pr-shards.mjs --validate\",\n \"check:playwright-browser-revision\": \"node scripts/check-playwright-browser-revision.mjs\",\n \"check:npm-ci-dry-run\": \"npm ci --dry-run --ignore-scripts\",\n \"test:e2e:quarantine\": \"node scripts/run-playwright.mjs --project=chromium --grep @quarantine --pass-with-no-tests\",\n \"test:e2e:mockups\": \"node scripts/run-playwright.mjs --project=chromium-mockups\",\n \"test:e2e:advisory\": \"node scripts/run-playwright.mjs --project=chromium --project=chromium-mockups --grep \\\"@quarantine|@mockup\\\" --pass-with-no-tests\",\n \"test:e2e:chromium\": \"node scripts/run-playwright.mjs --project=chromium --project=chromium-mockups\",\n \"test:e2e:visual\": \"node scripts/run-playwright.mjs --config=playwright.visual.config.ts\",\n \"test:e2e:visual:update\": \"node scripts/run-playwright.mjs --config=playwright.visual.config.ts --update-snapshots\",\n \"test:e2e:style-contract\": \"node scripts/run-playwright.mjs tests/ui-style-contract.spec.ts --project=chromium\",\n \"test:cross-tenant:staging\": \"node scripts/run-tsx.mjs scripts/test-cross-tenant-staging.ts\",\n \"clean:worktree\": \"node scripts/clean-worktree.mjs\",\n \"verify:preflight\": \"npm run check:installed-lock-parity && npm run typecheck && npm run verify:cheap && npm run clean:worktree\",\n \"verify:cheap\": \"npm run verify:cheap:internal\",\n \"verify:cheap:internal\": \"npm run check:runtime && npm run check:installed-lock-parity && npm run check:upload-limit-parity && npm run check:github-actions && npm run check:ci-scope && npm run check:verification-plan && npm run check:gitleaks-pinned && npm run check:ci-triage && npm run check:pr-policy && npm run check:gate-manifest && npm run check:branch-review-ledger && npm run check:outstanding-issues && npm run check:pr-mergeability && npm run sitemap:check && npm run docs:check-index && npm run docs:check-inventory && npm run docs:check-scripts && npm run docs:check-links && npm run check:knip && npm run check:maintainability-budgets && npm run brand:check && npm run check:assets && npm run check:therapy-data-index && npm run check:cross-mode-index && npm run check:type-scale && npm run check:icon-scale && npm run check:design-system-contract && npm run check:migration-role && npm run check:function-grants && npm run check:owner-scope && npm run lint && npm run typecheck && npm run test\",\n \"verify:pr-local\": \"node scripts/verify-pr-local.mjs\",\n \"verify:phone-chrome\": \"node scripts/verify-phone-chrome.mjs\",\n \"audit:final-merge\": \"node scripts/final-merge-audit.mjs\",\n \"verify:ui\": \"npm run check:runtime && npm run check:installed-lock-parity && npm run test:e2e:pr\",\n \"verify:release\": \"npm run check:runtime && npm run check:installed-lock-parity && npm run lint && npm run typecheck && npm run test && npm run build && npm run test:e2e && npm run check:production-readiness && npm run governance:release && npm run eval:quality:release\",\n \"verify:release:offline\": \"node scripts/verify-release-offline.mjs\",\n \"ci:env-check\": \"node scripts/check-ci-env.mjs\",\n \"check:github-actions\": \"node scripts/check-github-action-pins.mjs\",\n \"check:client-bundle-secrets\": \"node scripts/check-client-bundle-secrets.mjs\",\n \"check:knip\": \"knip --no-progress --include dependencies,unlisted,unresolved,duplicates\",\n \"check:knip:exports\": \"knip --no-progress --exports --no-exit-code\",\n \"check:maintainability-budgets\": \"node scripts/check-maintainability-budgets.mjs\",\n \"check:ci-scope\": \"node scripts/ci-change-scope.mjs --self-test\",\n \"check:verification-plan\": \"node scripts/verify-pr-local.mjs --self-test\",\n \"check:gitleaks-pinned\": \"node scripts/run-gitleaks-pinned.mjs --self-test\",\n \"check:ci-triage\": \"node scripts/ci-triage.mjs --self-test\",\n \"check:gate-manifest\": \"node scripts/check-gate-manifest.mjs\",\n \"check:branch-review-ledger\": \"node scripts/check-branch-review-ledger.mjs --self-test && node scripts/branch-review-ledger.mjs --self-test && node scripts/merge-branch-review-ledger.mjs --self-test && node scripts/check-branch-review-ledger.mjs\",\n \"check:outstanding-issues\": \"node scripts/check-outstanding-issues.mjs --self-test && node scripts/outstanding-issues.mjs --self-test && node scripts/check-outstanding-issues.mjs\",\n \"issues:add\": \"node scripts/outstanding-issues.mjs add\",\n \"issues:done\": \"node scripts/outstanding-issues.mjs done\",\n \"issues:update\": \"node scripts/outstanding-issues.mjs update\",\n \"issues:report\": \"node scripts/issues-report.mjs\",\n \"ledger:lookup\": \"node scripts/branch-review-ledger.mjs lookup\",\n \"ledger:append\": \"node scripts/branch-review-ledger.mjs append\",\n \"ledger:dedupe\": \"node scripts/branch-review-ledger.mjs dedupe\",\n \"ledger:rotate\": \"node scripts/branch-review-ledger.mjs rotate\",\n \"check:pr-policy\": \"node scripts/pr-policy.mjs --self-test && node scripts/check-pr-policy-workflow.mjs\",\n \"check:env-parity\": \"node scripts/check-env-parity.mjs\",\n \"sweep:branch-ledger\": \"node scripts/sweep-branch-ledger.mjs\",\n \"docs:check-links\": \"node scripts/check-docs-links.mjs\",\n \"docs:check-scripts\": \"node scripts/check-docs-script-refs.mjs\",\n \"docs:check-inventory\": \"node scripts/update-docs-inventory.mjs --check\",\n \"docs:update\": \"npm run sitemap:update && node scripts/update-docs-inventory.mjs\",\n \"deps:report\": \"node scripts/dependency-report.mjs\",\n \"docs:check-index\": \"node scripts/check-codebase-index-coverage.mjs\",\n \"sitemap:update\": \"node scripts/run-tsx.mjs scripts/generate-site-map.ts\",\n \"sitemap:check\": \"node scripts/run-tsx.mjs scripts/generate-site-map.ts --check\",\n \"brand:update\": \"node scripts/run-tsx.mjs scripts/generate-brand-assets.ts\",\n \"brand:check\": \"node scripts/run-tsx.mjs scripts/generate-brand-assets.ts --check\",\n \"check:therapy-data-index\": \"node scripts/build-therapies-index.mjs --check\",\n \"check:cross-mode-index\": \"node scripts/build-cross-mode-differentials-index.mjs --check\",\n \"check:runtime\": \"node scripts/run-tsx.mjs scripts/check-runtime.ts\",\n \"check:installed-lock-parity\": \"node scripts/check-installed-lock-parity.mjs\",\n \"check:upload-limit-parity\": \"node scripts/check-upload-limit-parity.mjs --self-test && node scripts/check-upload-limit-parity.mjs\",\n \"check:codex-cloud\": \"node scripts/check-codex-cloud-setup.mjs\",\n \"check:github-shell-access\": \"node scripts/check-github-shell-access.mjs --self-test\",\n \"check:github-shell-access:live\": \"node scripts/check-github-shell-access.mjs --allow-provider\",\n \"cloud:setup\": \"bash scripts/setup-codex-cloud.sh\",\npackage.json:127: \"format\": \"prettier --write .\",\npackage.json:128: \"format:check\": \"prettier --check .\",\npackage.json:310: \"prettier\": \"^3.9.6\",\nscripts/generate-site-map.ts:4:import { format } from \"prettier\";\nscripts/guard-push.mjs:19: * *and* the pushed prettier config are materialised into a scratch tree and\nscripts/guard-push.mjs:130: * `const a = 1`, run `npm run format`, and `prettier --check ` passes\nscripts/guard-push.mjs:234: lockedVersion = JSON.parse(readFileSync(lockPath, \"utf8\")).packages?.[\"node_modules/prettier\"]?.version;\nscripts/guard-push.mjs:243: const packageRoot = path.join(root, \"node_modules\", \"prettier\");\nscripts/guard-push.mjs:244: const prettierBin = path.join(packageRoot, \"bin\", \"prettier.cjs\");\nscripts/guard-push.mjs:245: if (!existsSync(prettierBin)) continue;\nscripts/guard-push.mjs:248: return prettierBin;\nscripts/guard-push.mjs:258: const prettierBin = findPrettierBin(PROJECT_ROOT, worktreeRoots());\nscripts/guard-push.mjs:259: if (!prettierBin) {\nscripts/guard-push.mjs:260: throw new Error(\"no exact-lock worktree provides node_modules/prettier\");\nscripts/guard-push.mjs:262: return prettierBin;\nscripts/guard-push.mjs:270: * edit can make existing source fail CI's repository-wide `prettier --check .`\nscripts/guard-push.mjs:274:/** Does `:` parse as JSON carrying a top-level `prettier` field? */\nscripts/guard-push.mjs:279: return JSON.parse(contents).prettier !== undefined;\nscripts/guard-push.mjs:289: * A package.json counts only when it actually carries a `prettier` field —\nscripts/guard-push.mjs:298: if (/^(?:\\.prettierrc(?:\\..+)?|prettier\\.config\\.(?:js|cjs|mjs|ts)|\\.prettierignore|\\.editorconfig)$/.test(base)) {\nscripts/guard-push.mjs:312: * - piping committed blobs through stdin still resolved `.prettierrc` from disk,\nscripts/guard-push.mjs:314: * - hand-staging config files could not evaluate a dynamic `prettier.config.mjs`\nscripts/guard-push.mjs:318:function checkPushedCommit(prettierBin, sha, files) {\nscripts/guard-push.mjs:341: const mismatch = prettierVersionMismatch(prettierBin, dir);\nscripts/guard-push.mjs:345: const modules = path.dirname(path.dirname(path.dirname(prettierBin)));\nscripts/guard-push.mjs:355: // Deleted paths are gone from the checkout, and prettier errors on a missing\nscripts/guard-push.mjs:360: // check the whole tree — exactly what CI's `prettier --check .` does.\nscripts/guard-push.mjs:363: const result = runPrettierCheck(prettierBin, dir, batch);\nscripts/guard-push.mjs:387:function prettierVersionMismatch(prettierBin, checkoutDir) {\nscripts/guard-push.mjs:395: const installed = readJson(path.join(path.dirname(path.dirname(prettierBin)), \"package.json\"))?.version;\nscripts/guard-push.mjs:396: const pinned = readJson(path.join(checkoutDir, \"package-lock.json\"))?.packages?.[\"node_modules/prettier\"]?.version;\nscripts/guard-push.mjs:399: `node_modules has prettier ${installed}, but the pushed lockfile pins ${pinned}, so this ` +\nscripts/guard-push.mjs:405:function runPrettierCheck(prettierBin, cwd, args) {\nscripts/guard-push.mjs:407: execFileSync(process.execPath, [prettierBin, \"--check\", \"--ignore-unknown\", ...args], {\nscripts/guard-push.mjs:421: // A malformed or unloadable config in the push fails CI's `prettier --check .`\nscripts/guard-push.mjs:424: return { verdict: \"error\", detail: detail || `prettier exited ${error?.status ?? \"non-zero\"}` };\nscripts/guard-push.mjs:428:export function formatGuard(changedBlobs, prettierResolver = resolvePrettierBin) {\nscripts/guard-push.mjs:433: let prettierBin;\nscripts/guard-push.mjs:435: prettierBin = prettierResolver();\nscripts/guard-push.mjs:457: const { verdict, detail } = checkPushedCommit(prettierBin, sha, files);\nnode_modules/next/dist/docs/02-pages/04-api-reference/05-cli/index.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/05-cli/create-next-app.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/05-cli/next.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/02-file-conventions/public-folder.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/02-file-conventions/index.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/02-file-conventions/instrumentation.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/02-file-conventions/src-folder.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/02-file-conventions/proxy.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/get-server-side-props.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/userAgent.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/get-static-props.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/next-request.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/index.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/get-static-paths.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/get-initial-props.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/next-response.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/use-search-params.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/use-router.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/use-report-web-vitals.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/03-functions/use-params.md\n",{"_899":3806,"_881":3807,"_860":861,"_883":867},1786564559844,{"_923":3804,"_925":3808,"_927":3809,"_929":930,"_865":1740,"_932":35,"_45":3810,"_934":3811,"_936":937,"_874":117,"_96":938},"/bin/bash -lc \"rg -n 'cns-depress|sedative|qt-prolong|electrolyte' src/lib/medication-interaction-lexicon.ts; cat package.json | sed -n '1,120p'; rg -n 'prettier' scripts package.json | head -40; find node_modules/next/dist/docs -type f | head -20\"",[3812,3813,3814,3815],"exec-11c4641c-5791-4bf2-91b2-4205201fc648","48655",{"_925":3825,"_173":3777,"_3773":3826,"_96":3775},{"_925":3822,"_204":3823,"_173":3824,"_96":3296},{"_925":3819,"_173":3820,"_3773":3821,"_96":3775},{"_925":3816,"_173":3817,"_96":3818},"find node_modules/next/dist/docs -type f","docs","listFiles","rg -n prettier scripts package.json","scripts","prettier","cat package.json","package.json","/workspace/Database/package.json","rg -n 'cns-depress|sedative|qt-prolong|electrolyte' src/lib/medication-interaction-lexicon.ts","cns-depress|sedative|qt-prolong|electrolyte",{"_881":3828,"_860":861,"_883":867},{"_944":3798,"_45":3829,"_972":3830,"_888":3831,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_0e577ca7e8f114c6016a7ccfcc8ec08193ac1cdaaf87c46efa","const r = await tools.exec_command({cmd:\"rg -n 'cns-depress|sedative|qt-prolong|electrolyte' src/lib/medication-interaction-lexicon.ts; cat package.json | sed -n '1,120p'; rg -n 'prettier' scripts package.json | head -40; find node_modules/next/dist/docs -type f | head -20\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":12000});\ntext(r.output);\n",{"_893":867},{"_881":3833,"_860":861,"_883":867},{"_884":-5,"_905":3834,"_45":3835,"_888":3836,"_909":3837,"_96":911},"gAAAAABqfM_MKGONDBgr38NKCICCy7RFto150c3SfgoVbcQ3c4OCSq4RUKK7XfSSLRsQfrRoaprQr5hVxepiuDU4Js8tJ04r-WaS4B7IoiH84XKngppSVdp3v76W5jl2tKU4QNeHrQWzTvHHIpxhRUd9sE5qHET2LpNb30K1Yi9Mhn_p0AR94LYEwD0iEOwhyO_nf5OC8utEN8QEhP8h9hKDlxZAQ7tI4gZ6TF92_LIEmvkjpDF1QpdKaB7_d58VZ2SHOilt3NJk4_zK0dn0qNhEDMzlVOwW5gBx5rQhKTiQct6FM3l2RgU12hs7wTWpA2ox_W4uso1FompdapenVUORxvaGN5UoacRyoq3948plotX3XQzg082Sz_zEHxVHwz7AERuEs4e6Jk53g_BPNcWwDpiP7pyjKUVUsuW_5mcmjudVx1_BOM2Vl7At_4HIjeQOYVAyzif88nS1yIsiXZnw7MIs2uzHlgei3RYuJWUAam3_p-mV2k1kpzOXg3PgWYcENAPXj6fIugbwFG4aEE1MwUznp5KBoUUHLUp9JtT1cCpF6t1wFP-OOu8hVlaoXDYz-6-2QgXISZHEiLkxvC-4bfIl9nmHgaY3aDJBDUsj71mpuG8EmaPcriSQy-Q_iOR5j632uTOzUnuzcH_CxKMwSOpRHe-mN-dfpOO51K0kJ8xi76_wLlnAo6IMLFyBE3eNJzi_GuvGSM1eqGevmICAAFuocRvmJIqkAtMAfU11zLsmZ3_ftmYUPofKGdA9SRiLaLouDeYy6Xxo9Uc540m0we6B3xrjEclJT4iF9E_ccNuvSw2846rtg0cugW-9vXWTydRUAEKCdpCqoJxklaMjPAYzUsJ4JeYP4e3gJhmxw8Q1BgA2TZwNREIbtHs0zNoOQJiAHX8wrDwmmMZchdXRJ3WSGJBbaHD4n-e19Uf3yluQfszqtFspItEK4mDGYZqjHQGGTNhtmXk6OXTZuloJuyjermrssKlEEYJg69Ur4eBpludm3MZ5F-O8zvJjoiIzWMKVVcuaTF71jKJp9ZVzs0WSHilz5_ZdZz0mQ9WoFBv8QGo9Qz7qK8zYlcAf2WjD5FafHYsYz3Rvss31KKImD819JCgrb4_jJS2oyFly0xTBdGNisoliMpWaZWb0gCDSBuIqjSdLz5_SdnWvQ_VCo1L-vp6_aNUDQ6JOgDSStvEZTEmcnsPVidIVsDgCpU05q68sMmy6Cv91-kDedqeBLH-eACXrhHnHU2JcWeRmsKaPg6bh5Gt7Yku7hvr6jfSBZ_V8JQBGhph-1ph7ER0R3JqQdmRIHy7aJvIN3nROLrnTp43rwt_pAQwyVfzX_ZfPyolnb_3r-gQ_-96pQSXK0RYJVKm6NqfJtUgk8XOD3sS4Isq3pVeCuqfMfpE5IUXdJVFJoI3z9jME7UKDqeByqff7Zi7SvsSI_ZS9vWvbiBb3E0t4qB3ld3StvIfVYEV_6kcbzrIyreUa5eKhvyZR2mfq8CpjX2H9N6kB7LbU1cRQUZR3AkQgSZss8J7RSgpTA4d_4vAQH4sT4e9iXZFCn7EsKtr1snMV9CHqHLgZQ3EHRJtxXdVUdiSojuOmeHzimIOyehSpCKoT6L5IX_dkinX1evQsqVXDCKrAlmFRXBpYRDeEVLH9998Pla9K_LD24R4SSDXHl37FKQesE6xFD-UMlvD63dE4b-WEM5-ptlwEJWN1IuRJJzMaWW9d4faEyzQhjBhcBY6pCoc1OEt_rMuFu-Puyh51_obwuY4e91Sma9rGlNBu4T2w1urrm_iDgQlRlyqPOq5TahCq8wy2T2ugvy_7Hp6UcAt-J86V5w4w4KFFm8oqcCQNBDQIdIEuuRAQ2mLoag8cR0-eBuzwmiGeQu8lfh_BiKHc08BQfo1SqOFVa5XMCJu-G8j72S-N4kLt8RCc2BaGxQu6FArRCxeDD9irfijf6-YPTejKBUVBmFDfAroWa9tT1RzOXdwAJen6SrtFeN2oeYUzE7ntDuMgLyw6h86ihegFVvqVV7UHfDgte8YiXAUaXi_O0vQgRoEZ_F6U","rs_0e577ca7e8f114c6016a7ccfc7de54819381c59d3327dc0f74",{"_893":867},[3838,3839],{"_49":3841,"_96":914},{"_49":3840,"_96":914},"**Planning mechanism catalogue enumeration**","**Designing clause extraction strategy**",{"_899":3843,"_881":3844,"_860":861,"_883":867},1786564556693,{"_884":3845,"_45":3835,"_909":3846,"_96":911},[],[3841,3840],{"_899":3848,"_881":3849,"_860":861,"_883":867},1786564537881,{"_923":3850,"_925":3851,"_927":3852,"_929":930,"_865":3853,"_932":35,"_45":3854,"_934":3855,"_936":937,"_874":117,"_96":938},"\n methadone\n[\n {\n key: 'Pharmacokinetic',\n val: \"HIGH — CYP inducers such as rifampicin, phenytoin, carbamazepine, St John's Wort, and some antiretrovirals can lower methadone exposure and precipitate withdrawal. CNS depressants increase sedation/respiratory depression; QT-prolongers and electrolyte-lowering medicines increase torsade risk.\",\n tags: []\n }\n]\n\n cetirizine\n[\n {\n key: 'Pharmacodynamic',\n val: 'MODERATE — Additive CNS depression if combined with alcohol or sedatives (due to slight BBB penetration).',\n tags: []\n }\n]\n\n naltrexone\n[\n {\n key: 'Pharmacodynamic',\n val: 'CRITICAL — Opioid analgesia is antagonised. Attempts to overcome blockade can cause fatal overdose; emergency opioid analgesia may require higher opioid doses and closer respiratory monitoring because respiratory depression may be deeper and prolonged.',\n tags: []\n }\n]\n\n buprenorphine-naloxone\n[\n {\n key: 'Pharmacodynamic',\n val: 'CRITICAL - CNS depressants, alcohol, benzodiazepines, gabapentinoids and other opioids can cause profound sedation, respiratory depression, coma and death. Acute pain may need specialist strategies; do not assume high-dose opioids are safe or ineffective.',\n tags: []\n },\n {\n key: 'Pharmacodynamic',\n val: 'HIGH — Benzodiazepines/Alcohol (Increases risk of respiratory depression).',\n tags: []\n }\n]\n// Curated counterparty lexicon for the drug-interaction index.\n//\n// The medication catalogue's `Key Interactions` rows are prose, not structured\n// drug pairs: \"CRITICAL — MAOIs, Tramadol, Tapentadol, St John's Wort. Massive\n// risk of Serotonin Syndrome.\" Roughly 58% of rows name a catalogue drug\n// literally; the rest name a class (\"NSAIDs\", \"CNS depressants\"), a mechanism\n// (\"CYP3A4 inhibitors\"), or something that is not a medicine at all (\"alcohol\",\n// \"grapefruit juice\", \"smoking\").\n//\n// This module is the hand-maintained source of truth that turns those surface\n// terms into catalogue targets. It is deliberately NOT derived by substring\n// matching, because substring matching is wrong in ways that matter clinically:\n//\n// - Clozapine's subclass is \"SGA / Dibenzodiazepine\" and olanzapine's is\n// \"SGA / Thienobenzodiazepine\". Both contain \"benzodiazepine\"; neither is a\n// benzodiazepine. The real benzodiazepines are `class === \"Benzodiazepine\"`.\n// - Naltrexone's subclass is \"Opioid Antagonist\". It is an opioid *blocker*,\n// not an opioid, and must never satisfy the term \"opioids\".\n// - The catalogue spells beta blockers both \"Beta Blocker\" and \"Beta-Blocker\".\n//\n// Every predicate therefore carries an explicit `denySlugs` escape hatch, and\n// `tests/medication-interaction-lexicon-coverage.test.ts` pins the two traps\n// above by name so a future edit cannot quietly reintroduce them.\n//\n// Resolution outcomes are three-valued on purpose — see `LexiconTermKind`.\n\nimport type { MedicationRecord } from \"@/lib/medications\";\n\n/**\n * How a surface term resolves.\n *\n * - `catalogue` — resolves to one or more of the 328 catalogue medications, so\n * it can genuinely match a patient's entered medication list.\n * - `external` — a real drug/class that is deliberately outside this catalogue\n * (ketoconazole, St John's Wort, barbiturates). A patient's list is\n * catalogue-only by construction, so this can never match — but it is a\n * *known* quantity, not a parsing failure, and so does not force the grey\n * \"needs manual review\" verdict.\n * - `nonDrug` — not a medicine (alcohol, grapefruit, coffee, smoking, dietary\n * timing). Must never produce a patient-medication match. Still rendered as\n * static content on the medication page.\n * - `mechanism` — a pharmacokinetic class we cannot enumerate from catalogue\n * data (\"CYP3A4 inhibitors\", \"P-gp inhibitors\"). Deliberately UNRESOLVED: a\n * row whose only counterparty is a bare mechanism forces the grey verdict,\n * because it could include catalogue drugs we have not enumerated.\n */\nexport type LexiconTermKind = \"catalogue\" | \"external\" | \"nonDrug\" | \"mechanism\";\n\nexport type CatalogueSelector = {\n /** Explicit catalogue slugs. */\n slugs?: string[];\n /** Match on `record.class` (exact, case-insensitive). */\n classes?: string[];\n /** Match on `record.subclass` (substring, case-insensitive). */\n subclassIncludes?: string[];\n /** Removed after the selector runs — the trap guard. Always wins. */\n denySlugs?: string[];\n};\n\nexport type LexiconTerm = {\n /** Canonical id, used in the generated index and in test pins. */\n id: string;\n /** Surface forms found in the prose. Matched whole-word, case-insensitive. */\n surfaces: string[];\n kind: LexiconTermKind;\n /** Required when `kind === \"catalogue\"`. */\n select?: CatalogueSelector;\n /** Why this term is external/nonDrug/mechanism — kept for auditability. */\n note?: string;\n};\n\n// ---------------------------------------------------------------------------\n// Catalogue classes\n// ---------------------------------------------------------------------------\n\nconst CATALOGUE_TERMS: LexiconTerm[] = [\n {\n id: \"benzodiazepines\",\n surfaces: [\"benzodiazepines\", \"benzodiazepine\", \"benzos\", \"benzo\"],\n kind: \"catalogue\",\n // `class`, NOT a subclass substring — see the Dibenzodiazepine trap above.\n select: { classes: [\"Benzodiazepine\"], denySlugs: [\"clozapine\", \"olanzapine-wafer-odt\"] },\n },\n {\n id: \"opioids\",\n surfaces: [\"opioids\", \"opioid\", \"opioid analgesia\", \"opiates\", \"full agonists\"],\n kind: \"catalogue\",\n select: {\n subclassIncludes: [\"Opioid\"],\n // Antagonists block opioid receptors; they are not opioids.\n denySlugs: [\"naltrexone\", \"naloxone\"],\n },\n },\n {\n id: \"ssris\",\n surfaces: [\"ssris\", \"ssri\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"SSRI\"] },\n },\n {\n id: \"snris\",\n surfaces: [\"snris\", \"snri\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"SNRI\"] },\n },\n {\n id: \"maois\",\n surfaces: [\"maois\", \"maoi\", \"monoamine oxidase inhibitors\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"MAOI\"] },\n },\n {\n id: \"tcas\",\n surfaces: [\"tcas\", \"tca\", \"tricyclics\", \"tricyclic antidepressants\", \"anticholinergic tcas\"],\n kind: \"catalogue\",\n select: { slugs: [\"amitriptyline\", \"nortriptyline\", \"imipramine\", \"clomipramine\", \"doxepin\", \"dothiepin\"] },\n },\n {\n id: \"antipsychotics\",\n surfaces: [\"antipsychotics\", \"antipsychotic\"],\n kind: \"catalogue\",\n select: { classes: [\"Antipsychotic\", \"LAI Antipsychotic\"] },\n },\n {\n id: \"nsaids\",\n surfaces: [\"nsaids\", \"nsaid\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"NSAID\"] },\n },\n {\n id: \"beta-blockers\",\n surfaces: [\"beta-blockers\", \"beta blockers\", \"beta-blocker\", \"beta blocker\", \"non-selective beta-blockers\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"Beta Blocker\", \"Beta-Blocker\"] },\n },\n {\n id: \"acei\",\n surfaces: [\"acei\", \"aceis\", \"ace inhibitors\", \"ace inhibitor\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"ACE Inhibitor\"] },\n },\n {\n id: \"arbs\",\n surfaces: [\"arbs\", \"arb\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"ARB\"] },\n },\n {\n id: \"diuretics\",\n surfaces: [\"diuretics\", \"diuretic\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"Diuretic\"] },\n },\n {\n id: \"thiazide-diuretics\",\n surfaces: [\"thiazide diuretics\", \"thiazides\", \"thiazide\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"Thiazide\"] },\n },\n {\n id: \"loop-diuretics\",\n surfaces: [\"loop diuretics\", \"loop diuretic\"],\n kind: \"catalogue\",\n select: { subclassIncludes: [\"Loop Diuretic\"] },\n },\n {\n id: \"antihypertensives\",\n surfaces: [\"antihypertensives\", \"antihypertensive\"],\n kind: \"catalogue\",\n select: { classes: [\"Antihypertensive\"] },\n },\n {\n id: \"anticoagulants\",\n surfaces: [\"anticoagulants\", \"anticoagulant\", \"doacs\", \"doac\"],\n kind: \"catalogue\",\n select: { classes: [\"Anticoagulant\"], denySlugs: [\"aspirin\"] },\n },\n {\n id: \"antiplatelets\",\n surfaces: [\"antiplatelets\", \"antiplatelet\"],\nimport { describe, expect, it } from \"vitest\";\n\nimport { getMedicationRecord } from \"@/lib/medication-snapshot\";\nimport {\n composeMedicationVerdict,\n evaluateMedicationInteractions,\n interactionRowCount,\n medicationDisplayName,\n SEVERITY_TONE,\n} from \"@/lib/medication-interactions\";\n\ndescribe(\"evaluateMedicationInteractions\", () => {\n it(\"matches a drug named outright in the counterparty sentence\", () => {\n // Sertraline's CRITICAL row: \"MAOIs, Tramadol, Tapentadol, St John's Wort.\"\n const result = evaluateMedicationInteractions(\"sertraline\", [\"tramadol-ir\"]);\n expect(result.interactions).toHaveLength(1);\n expect(result.interactions[0]?.counterpartySlug).toBe(\"tramadol-ir\");\n expect(result.interactions[0]?.severity).toBe(\"critical\");\n expect(result.interactions[0]?.tone).toBe(\"danger\");\n expect(result.highestTone).toBe(\"danger\");\n });\n\n it(\"matches through a resolved class term\", () => {\n // The same row names \"MAOIs\"; phenelzine is reached via the class, not by name.\n const result = evaluateMedicationInteractions(\"sertraline\", [\"phenelzine\"]);\n expect(result.interactions[0]?.counterpartySlug).toBe(\"phenelzine\");\n expect(result.interactions[0]?.counterpartyName).toBe(\"Phenelzine\");\n expect(result.interactions[0]?.matchedTerms).toContain(\"maois\");\n expect(result.interactions[0]?.tone).toBe(\"danger\");\n });\n\n it(\"renders the verbatim catalogue row text when given the record\", () => {\n const record = getMedicationRecord(\"sertraline\");\n const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\"], record);\n expect(result.interactions[0]?.note).toContain(\"NSAIDs\");\n expect(result.interactions[0]?.note).toMatch(/^(HIGH|CRITICAL)/);\n });\n\n it(\"still reports the interaction without a record, just with no note text\", () => {\n const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\"]);\n expect(result.interactions).toHaveLength(1);\n expect(result.interactions[0]?.note).toBe(\"\");\n });\n\n it(\"returns no matches for a patient list with nothing in common\", () => {\n const result = evaluateMedicationInteractions(\"sertraline\", [\"paracetamol\"]);\n expect(result.interactions).toHaveLength(0);\n expect(result.highestTone).toBeNull();\n });\n\n it(\"never reports a medication as interacting with itself\", () => {\n const result = evaluateMedicationInteractions(\"ibuprofen\", [\"ibuprofen\"]);\n expect(result.interactions.every((item) => item.counterpartySlug !== \"ibuprofen\")).toBe(true);\n });\n\n it(\"sorts the most severe interaction first\", () => {\n const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\", \"tramadol-ir\"]);\n expect(result.interactions.length).toBeGreaterThanOrEqual(2);\n expect(result.interactions[0]?.severity).toBe(\"critical\");\n });\n\n it(\"carries the unresolved row count for a medication the parser could not fully read\", () => {\n // Bupropion's CYP2D6-substrate row has no enumerable counterparty.\n const result = evaluateMedicationInteractions(\"bupropion-sr\", []);\n expect(result.unresolvedRowCount).toBeGreaterThan(0);\n expect(result.totalRowCount).toBeGreaterThanOrEqual(result.unresolvedRowCount);\n });\n\n it(\"returns an empty result for an unknown slug rather than throwing\", () => {\n const result = evaluateMedicationInteractions(\"not-a-real-drug\", [\"sertraline\"]);\n expect(result.interactions).toHaveLength(0);\n expect(result.totalRowCount).toBe(0);\n expect(interactionRowCount(\"not-a-real-drug\")).toBe(0);\n });\n\n it(\"names counterparties from the index, falling back to the slug\", () => {\n expect(medicationDisplayName(\"tramadol-ir\")).toBe(\"Tramadol IR\");\n expect(medicationDisplayName(\"not-a-real-drug\")).toBe(\"not-a-real-drug\");\n });\n\n it(\"maps every severity to a tone, and never maps an unknown severity to success\", () => {\n expect(SEVERITY_TONE.critical).toBe(\"danger\");\n expect(SEVERITY_TONE.moderate).toBe(\"warning\");\n expect(SEVERITY_TONE.low).toBe(\"success\");\n expect(SEVERITY_TONE.unknown).toBe(\"neutral\");\n });\n});\n\ndescribe(\"composeMedicationVerdict\", () => {\n const base = {\n considerationTone: null,\n considerationCount: 0,\n unassessedCount: 0,\n interactionTone: null,\n interactionCount: 0,\n unresolvedRowCount: 0,\n };\n\n it(\"is green when both engines ran clean\", () => {\n expect(composeMedicationVerdict(base).tone).toBe(\"success\");\n expect(composeMedicationVerdict(base).incomplete).toBe(false);\n });\n\n it(\"degrades green to grey when an interaction row could not be resolved\", () => {\n const verdict = composeMedicationVerdict({ ...base, unresolvedRowCount: 2 });\n expect(verdict.tone).toBe(\"neutral\");\n expect(verdict.incomplete).toBe(true);\n });\n\n it(\"degrades green to grey when a physiology gate was unassessed\", () => {\n expect(composeMedicationVerdict({ ...base, unassessedCount: 1 }).tone).toBe(\"neutral\");\n });\n\n it(\"keeps danger even when data is incomplete — a real finding outranks the caveat\", () => {\n const verdict = composeMedicationVerdict({\n ...base,\n interactionTone: \"danger\",\n interactionCount: 1,\n unresolvedRowCount: 3,\n });\n expect(verdict.tone).toBe(\"danger\");\n expect(verdict.incomplete).toBe(true);\n });\n\n it(\"takes the highest tone across both engines\", () => {\n expect(composeMedicationVerdict({ ...base, considerationTone: \"warning\", interactionTone: \"danger\" }).tone).toBe(\n \"danger\",\n );\n expect(composeMedicationVerdict({ ...base, considerationTone: \"danger\", interactionTone: \"warning\" }).tone).toBe(\n \"danger\",\n );\n });\n});\nimport { fireEvent, render, screen } from \"@testing-library/react\";\nimport { afterEach, beforeEach, describe, expect, it, vi } from \"vitest\";\n\nimport { PatientDetailsDockAction } from \"@/components/clinical-dashboard/patient-details-dock-action\";\nimport { PatientProfileProvider } from \"@/components/clinical-dashboard/patient-profile-context\";\nimport { patientDetailsAddonSlotId } from \"@/lib/mode-home-composer\";\nimport { PATIENT_PROFILE_STORAGE_KEY } from \"@/lib/patient-profile-storage\";\n\n/** Stand in for the phone dock's addon slot, which MasterSearchHeader renders. */\nfunction mountSlot(): HTMLElement {\n const slot = document.createElement(\"div\");\n slot.id = patientDetailsAddonSlotId;\n document.body.append(slot);\n return slot;\n}\n\nfunction setPhoneViewport(isPhone: boolean) {\n vi.stubGlobal(\n \"matchMedia\",\n vi.fn().mockImplementation((query: string) => ({\n matches: isPhone,\n media: query,\n onchange: null,\n addEventListener: vi.fn(),\n removeEventListener: vi.fn(),\n addListener: vi.fn(),\n removeListener: vi.fn(),\n dispatchEvent: vi.fn(),\n })),\n );\n}\n\nfunction renderAction() {\n return render(\n \n \n ,\n );\n}\n\nbeforeEach(() => {\n window.sessionStorage.clear();\n setPhoneViewport(true);\n});\n\nafterEach(() => {\n window.sessionStorage.clear();\n document.getElementById(patientDetailsAddonSlotId)?.remove();\n vi.unstubAllGlobals();\n});\n\ndescribe(\"PatientDetailsDockAction\", () => {\n it(\"portals into the dock's addon slot rather than positioning itself\", () => {\n const slot = mountSlot();\n renderAction();\n\n const action = screen.getByTestId(\"patient-details-dock-action\");\n expect(slot.contains(action)).toBe(true);\n });\n\n it(\"renders nothing when the dock exposes no slot\", () => {\n renderAction();\n expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n });\n\n it(\"renders nothing above the phone breakpoint, where the panel is already inline\", () => {\n setPhoneViewport(false);\n mountSlot();\n renderAction();\n\n expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n });\n\n it(\"is a real button that opens the patient sheet\", () => {\n mountSlot();\n renderAction();\n\n const action = screen.getByTestId(\"patient-details-dock-action\");\n expect(action).toHaveAttribute(\"type\", \"button\");\n expect(action).toHaveAttribute(\"aria-haspopup\", \"dialog\");\n expect(action).toHaveAttribute(\"aria-expanded\", \"false\");\n\n fireEvent.click(action);\n\n expect(screen.getByRole(\"dialog\", { name: \"Patient details\" })).toBeInTheDocument();\n expect(screen.getByTestId(\"patient-details-dock-action\")).toHaveAttribute(\"aria-expanded\", \"true\");\n });\n\n it(\"announces an empty profile without relying on the count badge\", () => {\n mountSlot();\n renderAction();\n\n expect(screen.getByText(\"No patient details entered\")).toBeInTheDocument();\n });\n\n it(\"counts every entered dimension, not just medications\", () => {\n window.sessionStorage.setItem(\n PATIENT_PROFILE_STORAGE_KEY,\n JSON.stringify({ ageYears: 70, medications: [\"sertraline\", \"aspirin\"], allergies: [\"penicillin\"] }),\n );\n mountSlot();\n renderAction();\n\n // age + 2 medications + 1 allergy\n expect(screen.getByText(\"4 details entered\")).toBeInTheDocument();\n });\n\n it(\"takes the accent treatment once a profile is loaded\", () => {\n window.sessionStorage.setItem(PATIENT_PROFILE_STORAGE_KEY, JSON.stringify({ medications: [\"sertraline\"] }));\n mountSlot();\n renderAction();\n\n expect(screen.getByTestId(\"patient-details-dock-action\").className).toContain(\n \"patient-details-fab__button--active\",\n );\n });\n\n it(\"stays visually quiet while the profile is empty\", () => {\n mountSlot();\n renderAction();\n\n expect(screen.getByTestId(\"patient-details-dock-action\").className).not.toContain(\n \"patient-details-fab__button--active\",\n );\n });\n});\nimport { fireEvent, render, screen } from \"@testing-library/react\";\nimport { afterEach, beforeEach, describe, expect, it } from \"vitest\";\n\nimport { PatientProfileProvider } from \"@/components/clinical-dashboard/patient-profile-context\";\nimport { PatientProfilePanel } from \"@/components/clinical-dashboard/patient-profile-panel\";\nimport { isProfileEmpty } from \"@/lib/medication-patient-alerts\";\nimport {\n PATIENT_PROFILE_MAX_MEDICATIONS,\n PATIENT_PROFILE_STORAGE_KEY,\n sanitizeMedicationSlugs,\n sanitizeProfile,\n} from \"@/lib/patient-profile-storage\";\n\nfunction renderPanel() {\n return render(\n \n \n ,\n );\n}\n\nfunction storedProfile(): Record {\n return JSON.parse(window.sessionStorage.getItem(PATIENT_PROFILE_STORAGE_KEY) ?? \"{}\");\n}\n\nbeforeEach(() => {\n window.sessionStorage.clear();\n});\n\nafterEach(() => {\n window.sessionStorage.clear();\n});\n\ndescribe(\"current-medications picker\", () => {\n it(\"adds a catalogue medication and persists its slug\", () => {\n renderPanel();\n\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n\n expect(storedProfile().medications).toEqual([\"sertraline\"]);\n expect(screen.getByTestId(\"patient-medication-sertraline\")).toBeInTheDocument();\n });\n\n it(\"clears the search box after adding, so the next drug starts fresh\", () => {\n renderPanel();\n const search = screen.getByTestId(\"patient-medication-search\") as HTMLInputElement;\n\n fireEvent.change(search, { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n\n expect(search.value).toBe(\"\");\n });\n\n it(\"removes a medication when its chip is activated again\", () => {\n renderPanel();\n\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n fireEvent.click(screen.getByTestId(\"patient-medication-sertraline\"));\n\n expect(storedProfile().medications).toEqual([]);\n expect(screen.queryByTestId(\"patient-medication-sertraline\")).not.toBeInTheDocument();\n });\n\n it(\"gives the remove control a name that survives without the icon\", () => {\n renderPanel();\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n\n expect(screen.getByTestId(\"patient-medication-sertraline\")).toHaveAttribute(\"aria-label\", \"Remove Sertraline\");\n });\n\n it(\"offers nothing for a drug outside the catalogue, and says why\", () => {\n renderPanel();\n\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"warfarinx\" } });\n\n expect(screen.getByText(/Only medications in this catalogue can be interaction-checked/i)).toBeInTheDocument();\n });\n\n it(\"drops the medication list and the search term on Clear\", () => {\n renderPanel();\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n\n fireEvent.click(screen.getByRole(\"button\", { name: /clear/i }));\n\n expect(storedProfile().medications).toEqual([]);\n expect((screen.getByTestId(\"patient-medication-search\") as HTMLInputElement).value).toBe(\"\");\n });\n});\n\ndescribe(\"medication-list sanitisation\", () => {\n it(\"keeps well-formed slugs, de-duplicated and sorted\", () => {\n expect(sanitizeMedicationSlugs([\"sertraline\", \"aspirin\", \"sertraline\"])).toEqual([\"aspirin\", \"sertraline\"]);\n });\n\n it(\"rejects non-strings and malformed slugs rather than storing them\", () => {\n expect(sanitizeMedicationSlugs([1, null, {}, \"Not A Slug\", \"-leading\", \"has_underscore\", \"\"])).toEqual([]);\n });\n\n it(\"normalises case rather than dropping an otherwise valid slug\", () => {\n expect(sanitizeMedicationSlugs([\" Sertraline \"])).toEqual([\"sertraline\"]);\n });\n\n it(\"caps a corrupted list instead of evaluating it unbounded\", () => {\n const many = Array.from({ length: 200 }, (_, index) => `drug-${index}`);\n expect(sanitizeMedicationSlugs(many).length).toBeLessThanOrEqual(PATIENT_PROFILE_MAX_MEDICATIONS);\n });\n\n it(\"returns an empty list for a non-array value\", () => {\n expect(sanitizeMedicationSlugs(\"sertraline\")).toEqual([]);\n expect(sanitizeProfile({ medications: \"sertraline\" }).medications).toEqual([]);\n });\n});\n\ndescribe(\"isProfileEmpty\", () => {\n it(\"treats a medication list as a populated profile\", () => {\n expect(isProfileEmpty({ medications: [] })).toBe(true);\n expect(isProfileEmpty({ medications: [\"sertraline\"] })).toBe(false);\n });\n});\n","/bin/bash -lc \"node - <<'NODE'\nconst d=require('./data/medications-snapshot.json'); for(const s of ['methadone','cetirizine','naltrexone','buprenorphine-naloxone']) {const r=d.find(x=>x.slug===s); console.log('\\\\n',s); for(const sec of r.sections||[]) if(sec.type==='inter') console.log(sec.rows)}\nNODE\nsed -n '1,180p' src/lib/medication-interaction-lexicon.ts\nsed -n '1,260p' tests/medication-interactions.test.ts\nsed -n '1,220p' tests/patient-details-dock-action.dom.test.tsx\nsed -n '1,210p' tests/patient-profile-medications.dom.test.tsx\"",[3856],3233,"exec-f8f95424-92f2-4077-b377-6e63acdbbbaf","79539",{"_925":3857,"_96":941},"node - <<'NODE'\nconst d=require('./data/medications-snapshot.json'); for(const s of ['methadone','cetirizine','naltrexone','buprenorphine-naloxone']) {const r=d.find(x=>x.slug===s); console.log('\\n',s); for(const sec of r.sections||[]) if(sec.type==='inter') console.log(sec.rows)}\nNODE\nsed -n '1,180p' src/lib/medication-interaction-lexicon.ts\nsed -n '1,260p' tests/medication-interactions.test.ts\nsed -n '1,220p' tests/patient-details-dock-action.dom.test.tsx\nsed -n '1,210p' tests/patient-profile-medications.dom.test.tsx",{"_881":3859,"_860":861,"_883":867},{"_944":3860,"_45":-5,"_888":3861,"_204":-5,"_947":3862,"_96":949},"call_EtsAbCpoey2MEaNrJUAhL6E2",{"_893":867},{"_355":3863,"_951":-5},[3864,3865],{"_49":3866,"_96":955},{"_49":3850,"_96":955},"Script completed\nWall time 3.3 seconds\nOutput:\n",{"_881":3868,"_860":861,"_883":867},{"_944":3860,"_45":3869,"_972":3870,"_888":3871,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_025cd3e962896641016a7ccfb2dd5c819096c540c563989c31","const r = await tools.exec_command({cmd:\"node - <<'NODE'\\nconst d=require('./data/medications-snapshot.json'); for(const s of ['methadone','cetirizine','naltrexone','buprenorphine-naloxone']) {const r=d.find(x=>x.slug===s); console.log('\\\\n',s); for(const sec of r.sections||[]) if(sec.type==='inter') console.log(sec.rows)}\\nNODE\\nsed -n '1,180p' src/lib/medication-interaction-lexicon.ts\\nsed -n '1,260p' tests/medication-interactions.test.ts\\nsed -n '1,220p' tests/patient-details-dock-action.dom.test.tsx\\nsed -n '1,210p' tests/patient-profile-medications.dom.test.tsx\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":40000});\ntext(r.output);\n",{"_893":867},{"_881":3873,"_860":861,"_883":867},{"_884":-5,"_905":3874,"_45":3875,"_888":3876,"_909":3877,"_96":911},"gAAAAABqfM-yuVMTAKDO6TqN4knoPqmyikNQMDEKYS6XCFBRf5AGt-WLfcFu7RuU3_JpZDSGZJcPbU3xPcS0VfaTziW_bCxzreVqxL6-ntKByWp-_QmWEnSmXyGyVd9sjZM53vtEfLtyZC_o21-SQRDl5rDN8oYlVkPdDnqxwqaSdAox2MWZU8gKHvUobD4Di0I9Jeps6bUGm_1LOuG-moAgh_c0MkWn2xBYa-z2kqqlrbWdb84oi2ZAqAmyqZ2sNnc_HZCARKto1BmcGrNhkxLXV3Uif36AjNt_W6fnmR9p549AWvM7CLNTgWJvrPqeYIylvv5lebT1gknbOxKwemr8u7Y2eJtWyqK4fsP0CeUi6_wYBKyv9PGILKkdo29nFCCKsN_5NvnHnSnm9s-Jtt4Z1ww26B2mTatnfQ01s_neCZbvJtmyGCKN0_NWZPYQM5WlhE5KI1_txQ-8ap_1GNzaZtjo4_aY5m1Kza21CicSnzsk-cos0mh-GgDZVfmtsWaRfAwEclOgHCLfIA_r9dEIBgq4VTcWcGtoDiau-ViUN8iNfJ2iKIBJ5ydf8YNcFQOUxGzDra9OO_Uxzk3HngNrK8Oe0GcepZLXWcUUKUChKDgW7V2WrxaOEsrZcsasfHRUf5BqdMgXwNg_-R3qCVFwaGZwrF3zVrZPaqWdoz1S03XBp5_tBxj2fu3w2jatd2lmooNq4rNA1wn2z3ekw51Y7Brp1ubm5yUv6LvDdIcGuOlsz7-0i0tNYm7_NzZMRAx-N4zxRPFtHOcpzatMSvhOX8QSAvrcWVrP52eCXJyGYxzK6nVikLYAqflwJSrK3DYLyzA01oP-4LVzlz2WEp4aMNTtRTerJ3T1DNj9n0iuOx4Lh4LCz7rQzPzBgqbyr5l4dznFRZN3q_MTiBXJSo3fj79WftKS-xnFS36SD657DPe32ToIK4LFk7QqT3zMsJ8cg_AfzuFyEaNIzlv6zERX9ps8c7cCRts1KqyHhzRhRNoxmPLTyUM=","rs_025cd3e962896641016a7ccfb2290081909f967dec6db1fee9",{"_893":867},[3878],{"_49":3879,"_96":914},"**Examining rows via node and lexicon**",{"_899":3881,"_881":3882,"_860":861,"_883":867},1786564530845,{"_884":3883,"_45":3875,"_909":3884,"_96":911},[],[3879],{"_881":3886,"_860":861,"_883":867},{"_944":3887,"_45":-5,"_888":3888,"_204":-5,"_947":3889,"_96":949},"call_Pts5ott4Gj7PcDXYp3a1YH7u",{"_893":867},{"_355":3890,"_951":-5},[3891,3892],{"_49":3285,"_96":955},{"_49":3893,"_96":955},"// Patient-medication-list → drug-interaction evaluation.\n//\n// The companion to `medication-patient-alerts.ts`. That module answers \"does\n// this patient's *physiology* change how I use this drug?\"; this one answers\n// \"does this drug collide with something the patient is *already taking*?\".\n// Both are pure and framework-free so the prescribing workspace, the medication\n// detail page, and unit tests can share them.\n//\n// Input data is the generated `data/medication-interaction-index.json` (see\n// `scripts/build-medication-interaction-index.ts`), which carries, per source\n// medication, one entry per `Key Interactions` row: normalised severity, the\n// resolved catalogue counterparties, and the verbatim source text.\n//\n// THE ONE INVARIANT THAT MATTERS\n// `success` (green) is only reachable when every row on the medication resolved.\n// A medication carrying an unresolved row returns `highestTone: null` with a\n// non-zero `unresolvedRowCount`, and the render layer must show that as neutral\n// grey with a \"needs manual review\" note — never as an all-clear. Missing\n// analysis is not the same as a negative finding.\n\nimport interactionIndex from \"../../data/medication-interaction-index.json\";\nimport { SEMANTIC_TONE_PRIORITY, type SemanticTone } from \"@/lib/semantic-tone\";\n\nexport type InteractionSeverity =\n \"critical\" | \"high\" | \"moderate\" | \"caution\" | \"low\" | \"none\" | \"safe\" | \"beneficial\" | \"unknown\";\n\nexport type MedicationInteraction = {\n /** Stable id for React keys and test ids. */\n id: string;\n counterpartySlug: string;\n counterpartyName: string;\n /**\n * Lexicon term ids that fired on this row, for auditability. Row-level, not\n * per-counterparty: a row naming \"MAOIs, Tramadol\" reports both terms for\n * either match. Empty when the row resolved purely by drug name.\n */\n matchedTerms: string[];\n severity: InteractionSeverity;\n tone: SemanticTone;\n /** `row.key` — \"Pharmacodynamic\", \"Pharmacokinetic\", \"Triple Whammy\", … */\n kind: string;\n /** VERBATIM catalogue row text. Never paraphrased. */\n note: string;\n};\n\nexport type MedicationInteractionResult = {\n interactions: MedicationInteraction[];\n counts: Record;\n /** Highest tone across matched interactions, or null when none matched. */\n highestTone: SemanticTone | null;\n /**\n * Interaction rows on this medication whose counterparty could not be\n * machine-resolved. Non-zero must suppress any green verdict.\n */\n unresolvedRowCount: number;\n /** Total interaction rows the catalogue carries for this medication. */\n totalRowCount: number;\n};\n\ntype IndexRow = {\n rowKey: string;\n rowIndex: number;\n severity: string;\n counterparties: string[];\n termIds: string[];\n resolved: boolean;\n};\ntype InteractionIndexShape = {\n version: number;\n sourceRowCount: number;\n names: Record;\n bySlug: Record;\n};\n\nconst INDEX = interactionIndex as unknown as InteractionIndexShape;\n\n/** Display name for a catalogue slug, falling back to the slug itself. */\nexport function medicationDisplayName(slug: string): string {\n return INDEX.names[slug] ?? slug;\n}\n\nexport type MedicationOption = { slug: string; name: string };\n\nlet cachedOptions: MedicationOption[] | null = null;\n\n/**\n * Every catalogue medication as a pickable `{ slug, name }`, name-sorted.\n *\n * Sourced from the interaction index rather than the 3.5 MB catalogue snapshot:\n * the picker only needs slugs and names, and the index is already loaded on the\n * surfaces that host the picker.\n */\nexport function catalogueMedicationOptions(): MedicationOption[] {\n cachedOptions ??= Object.entries(INDEX.names)\n .map(([slug, name]) => ({ slug, name }))\n .sort((a, b) => a.name.localeCompare(b.name));\n return cachedOptions;\n}\n\n/** True when the slug names a real catalogue medication. */\nexport function isCatalogueMedicationSlug(slug: string): boolean {\n return Object.hasOwn(INDEX.names, slug);\n}\n\nexport const SEVERITY_TONE: Record = {\n critical: \"danger\",\n high: \"danger\",\n moderate: \"warning\",\n caution: \"warning\",\n low: \"success\",\n none: \"success\",\n safe: \"success\",\n beneficial: \"success\",\n // An unparsed severity token must not be optimistic.\n unknown: \"neutral\",\n};\n\nconst EMPTY_COUNTS: Record = {\n danger: 0,\n warning: 0,\n clinical: 0,\n success: 0,\n neutral: 0,\n info: 0,\n};\n\nconst SEVERITY_ORDER: InteractionSeverity[] = [\n \"critical\",\n \"high\",\n \"moderate\",\n \"caution\",\n \"unknown\",\n \"low\",\n \"none\",\n \"safe\",\n \"beneficial\",\n];\n\nfunction normaliseSeverity(value: string): InteractionSeverity {\n return (SEVERITY_ORDER as string[]).includes(value) ? (value as InteractionSeverity) : \"unknown\";\n}\n\n/** Total interaction rows the catalogue carries for a medication. */\nexport function interactionRowCount(slug: string): number {\n return INDEX.bySlug[slug]?.rows.length ?? 0;\n}\n\n/**\n * Evaluate one medication against the patient's current medication list.\n *\n * `patientMedicationSlugs` are catalogue slugs. The source medication is\n * excluded automatically, so a patient already taking the drug being viewed does\n * not produce a self-interaction.\n */\nexport function evaluateMedicationInteractions(\n slug: string,\n patientMedicationSlugs: readonly string[],\n /**\n * The medication's own record, when the caller has it. Used to recover the\n * verbatim `Key Interactions` row text by index — that text is deliberately\n * not duplicated into the generated index (see the build script). Without a\n * record the interaction still reports correctly, just with an empty `note`.\n */\n record?: { sections?: { type: string; rows?: { key: string; val: string }[] }[] } | null,\n): MedicationInteractionResult {\n const entry = INDEX.bySlug[slug];\n if (!entry) {\n return {\n interactions: [],\n counts: { ...EMPTY_COUNTS },\n highestTone: null,\n unresolvedRowCount: 0,\n totalRowCount: 0,\n };\n }\n\n const patient = new Set(patientMedicationSlugs.filter((value) => value !== slug));\n const interactions: MedicationInteraction[] = [];\n const sourceRows = record?.sections?.find((section) => section.type === \"inter\")?.rows ?? [];\n\n for (const row of entry.rows) {\n for (const counterpartySlug of row.counterparties) {\n if (!patient.has(counterpartySlug)) continue;\n const severity = normaliseSeverity(row.severity);\n interactions.push({\n id: `${slug}:${row.rowIndex}:${counterpartySlug}`,\n counterpartySlug,\n counterpartyName: medicationDisplayName(counterpartySlug),\n matchedTerms: row.termIds,\n severity,\n tone: SEVERITY_TONE[severity],\n kind: row.rowKey,\n note: sourceRows[row.rowIndex]?.val ?? \"\",\n });\n }\n }\n\n interactions.sort((a, b) => {\n const byTone = SEMANTIC_TONE_PRIORITY[b.tone] - SEMANTIC_TONE_PRIORITY[a.tone];\n if (byTone !== 0) return byTone;\n const bySeverity = SEVERITY_ORDER.indexOf(a.severity) - SEVERITY_ORDER.indexOf(b.severity);\n if (bySeverity !== 0) return bySeverity;\n return a.counterpartyName.localeCompare(b.counterpartyName);\n });\n\n const counts: Record = { ...EMPTY_COUNTS };\n for (const interaction of interactions) counts[interaction.tone] += 1;\n\n return {\n interactions,\n counts,\n highestTone: interactions[0]?.tone ?? null,\n unresolvedRowCount: entry.unresolvedRowCount,\n totalRowCount: entry.rows.length,\n };\n}\n\n// ---------------------------------------------------------------------------\n// Composition with the physiology engine\n// ---------------------------------------------------------------------------\n\nexport type MedicationVerdict = {\n tone: SemanticTone;\n /** True when something prevented a complete assessment (grey, not green). */\n incomplete: boolean;\n interactionCount: number;\n considerationCount: number;\n unresolvedRowCount: number;\n};\n\n/**\n * Fold the physiology considerations and the interaction matches into the single\n * tone a result row's border wears.\n *\n * Precedence is the shared `SEMANTIC_TONE_PRIORITY` ladder (danger 6 → info 1),\n * with one override that is the whole point of the function: if either engine\n * reports something it could not assess, a would-be `success` degrades to\n * `neutral`. Green must be unreachable on incomplete data — the same fail-safe\n * `evaluatePatientAlerts` already applies through its `unassessed` list.\n */\nexport function composeMedicationVerdict(input: {\n considerationTone: SemanticTone | null;\n considerationCount: number;\n unassessedCount: number;\n interactionTone: SemanticTone | null;\n interactionCount: number;\n unresolvedRowCount: number;\n}): MedicationVerdict {\n const incomplete = input.unassessedCount > 0 || input.unresolvedRowCount > 0;\n const candidates = [input.considerationTone, input.interactionTone].filter(\n (tone): tone is SemanticTone => tone !== null,\n );\n\n let tone: SemanticTone = candidates.length\n ? candidates.reduce((best, current) =>\n SEMANTIC_TONE_PRIORITY[current] > SEMANTIC_TONE_PRIORITY[best] ? current : best,\n )\n : \"success\";\n\n if (incomplete && tone === \"success\") tone = \"neutral\";\n\n return {\n tone,\n incomplete,\n interactionCount: input.interactionCount,\n considerationCount: input.considerationCount,\n unresolvedRowCount: input.unresolvedRowCount,\n };\n}\n onChange(next !== null && next >= min && next <= max ? next : null);\n }}\n error={outOfRange ? `Enter ${min}–${max}${unit ? ` ${unit}` : \"\"}.` : undefined}\n className=\"nums\"\n data-testid={testId}\n />\n );\n}\n\n/**\n * Search-and-add list of what the patient is currently taking.\n *\n * Restricted to catalogue medications on purpose: an interaction can only be\n * checked against a drug the catalogue actually carries, so accepting free text\n * would let a clinician enter \"warfarin\", see no alert, and read that as an\n * all-clear when nothing was ever checked.\n */\nfunction MedicationPicker({\n selected,\n onToggle,\n resetNonce,\n}: {\n selected: string[];\n onToggle: (slug: string) => void;\n resetNonce: number;\n}) {\n const [term, setTerm] = useState(\"\");\n const listId = useId();\n\n // Clearing the profile should empty the search box too.\n const [syncedNonce, setSyncedNonce] = useState(resetNonce);\n if (syncedNonce !== resetNonce) {\n setSyncedNonce(resetNonce);\n setTerm(\"\");\n }\n\n const options = catalogueMedicationOptions();\n const selectedSet = new Set(selected);\n const query = term.trim().toLowerCase();\n const matches = query\n ? options.filter((option) => option.name.toLowerCase().includes(query) && !selectedSet.has(option.slug)).slice(0, 8)\n : [];\n\n return (\n
\n Current medications\n\n {selected.length > 0 ? (\n
\n {selected.map((slug) => (\n
\n onToggle(slug)}\n data-testid={`patient-medication-${slug}`}\n aria-label={`Remove ${medicationDisplayName(slug)}`}\n className={cn(segmentBase, segmentActive, \"inline-flex items-center gap-1.5\")}\n >\n {medicationDisplayName(slug)}\n \n \n
\n ))}\n
\n ) : null}\n\n setTerm(event.target.value)}\n placeholder=\"Search medications to add…\"\n aria-describedby={listId}\n data-testid=\"patient-medication-search\"\n />\n\n
\n {matches.map((option) => (\n (null);\n const [open, setOpen] = useState(false);\n\n useEffect(() => {\n const phoneMediaQuery = window.matchMedia(\"(max-width: 639px)\");\n const sync = () => {\n setHost(phoneMediaQuery.matches ? document.getElementById(patientDetailsAddonSlotId) : null);\n };\n sync();\n phoneMediaQuery.addEventListener(\"change\", sync);\n // The dock (and therefore the slot) mounts and unmounts with the composer,\n // so watch for it rather than assuming it exists on first paint.\n const observer = new MutationObserver(sync);\n observer.observe(document.body, { childList: true, subtree: true });\n return () => {\n phoneMediaQuery.removeEventListener(\"change\", sync);\n observer.disconnect();\n };\n }, []);\n\n // Count the entered dimensions, not just the medications, so the badge means\n // \"how much context is loaded\" rather than \"how many drugs\".\n const enteredCount = countEnteredFields(profile);\n\n const sheet = (\n setOpen(false)}\n title=\"Patient details\"\n description=\"Anonymous physiology and current medications. Cleared when the tab closes.\"\n mobilePlacement=\"bottom\"\n testId=\"patient-details-sheet\"\n >\n \n \n );\n\n if (!host) {\n // Above the phone breakpoint the panel is already inline on these surfaces,\n // so there is nothing to render — but keep the sheet mounted if it is open\n // so a resize mid-edit does not drop the dialog and the focus with it.\n return open ? sheet : null;\n }\n\n return (\n <>\n {createPortal(\n
\n setOpen(true)}\n data-testid=\"patient-details-dock-action\"\n aria-haspopup=\"dialog\"\n aria-expanded={open}\n className={cn(\"patient-details-fab__button\", !isEmpty && \"patient-details-fab__button--active\")}\n >\n \n Patient details\n {enteredCount > 0 ? (\n \n {enteredCount}\n \n ) : null}\n {/* The count is decorative; the real state goes to assistive tech here. */}\n \n {isEmpty ? \"No patient details entered\" : `${enteredCount} details entered`}\n \n \n \n
,\n host,\n )}\n {sheet}\n \n );\n}\n\n/** How many profile dimensions carry a value. Drives the pill's count badge. */\nfunction countEnteredFields(profile: {\n ageYears?: number | null;\n egfr?: number | null;\n crcl?: number | null;\n scr?: number | null;\n qtc?: number | null;\n hepatic?: string | null;\n pregnant?: boolean;\n breastfeeding?: boolean;\n allergies?: string[];\n medications?: string[];\n}): number {\n let count = 0;\n for (const value of [profile.ageYears, profile.egfr, profile.crcl, profile.scr, profile.qtc]) {\n if (typeof value === \"number\" && Number.isFinite(value)) count += 1;\n }\n if (profile.hepatic && profile.hepatic !== \"none\") count += 1;\n if (profile.pregnant) count += 1;\n if (profile.breastfeeding) count += 1;\n count += profile.allergies?.length ?? 0;\n count += profile.medications?.length ?? 0;\n return count;\n}\nsrc/lib/medication-interaction-lexicon.ts:91: denySlugs: [\"naltrexone\", \"naloxone\"],\ntests/medications.test.ts:449: const record = getMedicationRecord(\"buprenorphine-sl-depot\");\ntests/medication-interaction-lexicon-coverage.test.ts:101: expect(opioids).toContain(\"methadone\");\ntests/medication-interaction-lexicon-coverage.test.ts:102: expect(opioids).not.toContain(\"naltrexone\");\ndata/medications-snapshot.json:138: \"val\": \"First-line relapse-prevention option for patients seeking abstinence, alongside naltrexone. Particularly useful when opioid therapy makes naltrexone unsuitable, but avoid renal insufficiency and severe hepatic failure (Child-Pugh C).\",\ndata/medications-snapshot.json:350: \"slug\": \"buprenorphine-sl-depot\",\ndata/medications-snapshot.json:401: \"val\": \"Depot buprenorphine should follow appropriate buprenorphine induction/tolerance confirmation. Giving buprenorphine too soon after full agonists can precipitate withdrawal; depot administration makes rapid dose reversal difficult.\",\ndata/medications-snapshot.json:448: \"val\": \"**SC abdominal injection by healthcare professional**. Verify transmucosal buprenorphine tolerance before first injection. Usual regimen is 300 mg monthly for the first two months, then 100 mg monthly; 300 mg monthly maintenance may be used if tolerated and response is inadequate.\",\ndata/medications-snapshot.json:474: \"val\": \"S8. PBS search shows buprenorphine modified-release injection strengths under S100 HSD Community Access; confirm product-specific item/restriction and jurisdictional OAT requirements before prescribing.\",\ndata/medications-snapshot.json:512: \"note\": \"Depot buprenorphine PI sources require benefit-risk review in pregnancy/lactation.\"\ndata/medications-snapshot.json:564: \"val\": \"Depot buprenorphine can reduce daily dosing burden and diversion opportunity, but it is not instantly reversible; confirm stability/tolerance and plan follow-up before injection.\",\ndata/medications-snapshot.json:585: \"val\": \"Sublingual buprenorphine has a long terminal half-life; depot products release buprenorphine over weeks to months. Do not use a single half-life number to guide depot switching or washout.\",\ndata/medications-snapshot.json:596: \"val\": \"Source Check - Buvidal ARTG/PI, Sublocade Australian PI, and PBS buprenorphine modified-release injection search checked 2026-05-10 for this entry.\"\ndata/medications-snapshot.json:608: \"value\": \"Sublingual buprenorphine products for induction/transition; depot products are healthcare-professional SC injections: Buvidal weekly/monthly and Sublocade monthly abdominal injection.\"\ndata/medications-snapshot.json:624: \"value\": \"Avoid depot initiation without established buprenorphine tolerance/appropriate induction. Use caution with respiratory insufficiency, hepatic impairment, pregnancy/lactation, CNS depressants, and high-risk injection-site or diversion concerns.\"\ndata/medications-snapshot.json:632: \"value\": \"Full Opioid Agonists (Morphine/Oxycodone). Because buprenorphine's grip on the receptor is so tight, standard opioids will bounce off. If the patient breaks their leg, standard analgesia will fail. They require Ketamine, nerve blocks, or massive ICU-level Fentanyl doses to break through the blockade.\"\ndata/medications-snapshot.json:636: \"value\": \"Before depot: confirm buprenorphine tolerance/withdrawal stability, baseline LFTs, viral hepatitis status where relevant, sedation/respiratory status, injection-site reactions, pregnancy/lactation status, and CNS depressant use.\"\ndata/medications-snapshot.json:645: \"slug\": \"buprenorphine-naloxone\",\ndata/medications-snapshot.json:733: \"val\": \"Start only when objective opioid withdrawal is present and titrate to clinical response. Monitor closely during transfer from full agonists or methadone because buprenorphine can precipitate withdrawal if started too soon.\",\ndata/medications-snapshot.json:738: \"val\": \"**SL/buccal** usual maintenance is commonly 8-24 mg/day buprenorphine; maximum is 32 mg/day. Do not substitute film strengths without prescriber approval because exposures can differ.\",\ndata/medications-snapshot.json:786: \"val\": \"CRITICAL - Contraindicated in severe respiratory insufficiency, severe hepatic impairment, and hypersensitivity to buprenorphine, naloxone, or excipients.\",\ndata/medications-snapshot.json:935: \"value\": \"Induct only when objective opioid withdrawal is present. Initial dosing is individualised; adjust by clinical response. Maintenance commonly 8-24 mg/day; max 32 mg/day buprenorphine.\"\ndata/medications-snapshot.json:1597: \"slug\": \"methadone\",\ndata/medications-snapshot.json:1696: \"val\": \"Initial methadone is usually 20-30 mg daily for unsanctioned opioid use; up to 40 mg may be used only with higher tolerance and supervised monitoring. Do not give additional dose for at least 3 hours after the first dose. Increase by 5-10 mg every few days if no sedation/intoxication; avoid increases >20 mg/week.\",\ndata/medications-snapshot.json:1706: \"val\": \"CAUTION — Do not treat methadone as simply 'safe in CKD'. The PI advises caution in renal dysfunction; for repeated analgesic dosing, increase interval to at least 8-hourly when GFR is 10-50 mL/min and at least 12-hourly when GFR is <10 mL/min.\",\ndata/medications-snapshot.json:1738: \"val\": \"Methadone access depends on indication, formulation, and local OAT program rules. PBS item 13334T covers methadone hydrochloride oral liquid; confirm jurisdictional authority, supervised dosing, and dispensing requirements.\",\ndata/medications-snapshot.json:1749: \"val\": \"TGA/PBS — Opioid agonist treatment for opioid dependence under supervised program arrangements; methadone products also have analgesia indications depending on formulation/product.\",\ndata/medications-snapshot.json:1793: \"val\": \"CAUTION — Breastfeeding is permissible in methadone-treated mothers, but monitor the infant for sedation, respiratory depression, adequate weight gain, and withdrawal if breastfeeding stops or maternal dose changes.\",\ndata/medications-snapshot.json:1824: \"val\": \"HIGH — CYP inducers such as rifampicin, phenytoin, carbamazepine, St John's Wort, and some antiretrovirals can lower methadone exposure and precipitate withdrawal. CNS depressants increase sedation/respiratory depression; QT-prolongers and electrolyte-lowering medicines increase torsade risk.\",\ndata/medications-snapshot.json:1965: \"slug\": \"naltrexone\",\ndata/medications-snapshot.json:2067: \"val\": \"Source check pending — targeted/as-needed naltrexone dosing was not supported by the sources checked for this edit. Prefer the PI-supported 50 mg once-daily regimen unless separately source-reviewed.\",\ndata/medications-snapshot.json:2109: \"val\": \"AUD: useful where opioid analgesia is not needed and hepatic status is acceptable. OUD: oral naltrexone is not routine first-line maintenance because retention/compliance are poor; reserve for selected motivated/supervised patients after verified opioid cessation.\",\ndata/medications-snapshot.json:2151: \"note\": \"PI advises caution in renal impairment because naltrexone/metabolite are primarily renally excreted.\"\ndata/medications-snapshot.json:2281: \"value\": \"You must wait at least 7 days after the last short-acting opioid (or 10-14 days for methadone) before giving the first dose of Naltrexone. Perform a 'Naloxone Challenge' test first if unsure.\"\ndata/medications-snapshot.json:4542: \"slug\": \"cetirizine\",\ndata/medications-snapshot.json:4796: \"val\": \"Source-backed review 2026-05-11: ALZENE/cetirizine Australian PI. Entry checked for dosing, access, contraindications/populations, interactions, monitoring, patient-context metadata, and app structure.\"\ndata/medications-snapshot.json:5533: \"val\": \"Loratadine is the least sedating second-generation antihistamine ideal for daytime allergy relief, but is less potent than cetirizine and may be insufficient for severe urticaria.\",\ndata/medications-snapshot.json:5737: \"value\": \"Loratadine is the least sedating second-generation antihistamine ideal for daytime allergy relief, but is less potent than cetirizine and may be insufficient for severe urticaria.\"\ndata/medications-snapshot.json:6102: \"slug\": \"buprenorphine-patch\",\ndata/medications-snapshot.json:34710: \"val\": \"**PO** / **IV** 20 mg STAT (Acts as an H2 blocker to adjunct H1 blockers like cetirizine during anaphylaxis/hives).\",\ndata/medications-snapshot.json:34922: \"value\": \"GORD / Peptic Ulcer Disease: **PO** 20-40 mg **BD** or 40 mg **NOCTE** (Nighttime dosing is highly effective because histamine drives nocturnal acid secretion). Allergic Reactions (Off-Label): **PO** / **IV** 20 mg STAT (Acts as an H2 blocker to adjunct H1 blockers like cetirizine during anaphylaxis/hives). Renal Impairment: If **eGFR** < 50, reduce dose to 20 mg **NOCTE** or prolong the interval to 48 hours.\"\ndata/medications-snapshot.json:63489: \"val\": \"Addicts use Pregabalin to 'boost' their heroin or methadone. It amplifies the opioid high by 3-5 times, but also amplifies the respiratory depression, causing accidental death.\",\ndata/medications-snapshot.json:89797: \"val\": \"Methadone lasts for 40 hours. Naloxone lasts for 1 hour. If you reverse a methadone overdose, you MUST set up a continuous IV Naloxone infusion (e.g., 2/3 of the wake-up dose per hour), or they will die when you turn your back.\",\ndata/medications-snapshot.json:89883: \"value\": \"Methadone lasts for 40 hours. Naloxone lasts for 1 hour. If you reverse a methadone overdose, you MUST set up a continuous IV Naloxone infusion (e.g., 2/3 of the wake-up dose per hour), or they will die when you turn your back.\"\ntests/patient-details-dock-action.dom.test.tsx:19: \"matchMedia\",\nsrc/components/clinical-dashboard/patient-details-dock-action.tsx:34: const phoneMediaQuery = window.matchMedia(\"(max-width: 639px)\");\nsrc/components/clinical-dashboard/patient-details-dock-action.tsx:42: const observer = new MutationObserver(sync);\nsrc/components/clinical-dashboard/patient-profile-panel.tsx:117:function MedicationPicker({\nsrc/components/clinical-dashboard/patient-profile-panel.tsx:338: \n",{"_899":3895,"_881":3896,"_860":861,"_883":867},1786564527738,{"_923":3893,"_925":3897,"_927":3898,"_929":930,"_865":35,"_932":35,"_45":3899,"_934":3900,"_936":937,"_874":117,"_96":938},"/bin/bash -lc \"sed -n '1,280p' src/lib/medication-interactions.ts; sed -n '100,180p' src/components/clinical-dashboard/patient-profile-panel.tsx; sed -n '1,150p' src/components/clinical-dashboard/patient-details-dock-action.tsx; rg -n 'methadone|cetirizine|naltrexone|buprenorphine' data/medications-snapshot.json src/lib/medication-interaction-lexicon.ts tests/medication* | head -100; rg -n 'MedicationPicker|MutationObserver|matchMedia' tests/patient-* src/components/clinical-dashboard/patient-*\"",[3901,3902,3903,3904,3905],"exec-5035aa46-e8b5-4a7e-9e26-4c5f380c016e","61954",{"_925":3915,"_204":3916,"_173":3457,"_96":3296},{"_925":3914,"_204":3770,"_173":2777,"_96":3296},{"_925":3912,"_204":3913,"_173":3727,"_96":3296},{"_925":3909,"_173":3910,"_3773":3911,"_96":3775},{"_925":3906,"_173":3907,"_3773":3908,"_96":3775},"rg -n 'MedicationPicker|MutationObserver|matchMedia' 'tests/patient-*' 'src/components/clinical-dashboard/patient-*'","patient-*","MedicationPicker|MutationObserver|matchMedia","rg -n 'methadone|cetirizine|naltrexone|buprenorphine' data/medications-snapshot.json src/lib/medication-interaction-lexicon.ts 'tests/medication*'","medications-snapshot.json","methadone|cetirizine|naltrexone|buprenorphine","sed -n '1,150p' src/components/clinical-dashboard/patient-details-dock-action.tsx","patient-details-dock-action.tsx","sed -n '100,180p' src/components/clinical-dashboard/patient-profile-panel.tsx","sed -n '1,280p' src/lib/medication-interactions.ts","medication-interactions.ts",{"_881":3918,"_860":861,"_883":867},{"_944":3887,"_45":3919,"_972":3920,"_888":3921,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_025cd3e962896641016a7ccfac89dc81909008c7c4743a9caa","const r = await tools.exec_command({cmd:\"sed -n '1,280p' src/lib/medication-interactions.ts; sed -n '100,180p' src/components/clinical-dashboard/patient-profile-panel.tsx; sed -n '1,150p' src/components/clinical-dashboard/patient-details-dock-action.tsx; rg -n 'methadone|cetirizine|naltrexone|buprenorphine' data/medications-snapshot.json src/lib/medication-interaction-lexicon.ts tests/medication* | head -100; rg -n 'MedicationPicker|MutationObserver|matchMedia' tests/patient-* src/components/clinical-dashboard/patient-*\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":3923,"_860":861,"_883":867},{"_884":-5,"_905":3924,"_45":3925,"_888":3926,"_909":3927,"_96":911},"gAAAAABqfM-smcjJ4nhw0JfBcK_TnTcDTiHeMG0oBRh7GMLX_L5TxVthF9s19cJZzqNfZppL3weeZwMGkWkioO2pOtp5ONjVVISA4yuA_d57tDCotQqBb3m6xnwVw1cqefh57VejM7BIKRyekdYbyoQK2Pv11l1N2kUXdmztCNeJgg7fTmOCJkga8QkoMnUjs77unHW6oqx8ZTvAuSQ3xNLZrP47rnCzHRts7ZG473XW0f33qqsmNdyQ8Xz2Ni7YXTbihQnWmzeZ85lhbSMTnGjQMi8IKlseVAh-T_1B4LpNONowgHLAbC9mYLlmrkciot1DksLjq8vIDwxth2If-VjWRCsH9cjZTHEwWrXUxuJOpL7kKmhisxEQEuMWVdwBuLySHSjQTntaH2Sf0LERPGioB3VYbY9ZztLQJVlZQdcm_5g9OJcHUVQuOqTBwtCUTB7RMPk9PnzOXcORFq6btX_WF-jc0wLPpNUVKbpwVpmMaW1-WeAcswF50iNRo1OXydhnGuChvzkKDm7ZOdk2j2ZjikCuYhGg2JlPzJiHKi6J_zXt8ee11NyqCSusWPTBQgVsT7bdtm_cgCJqZfL6vXjVDWDeytw9fXIy_mNe3Yz0CDfJZWRFx8r3Tvo_DgWbi_mAdsOOki4TbBdZx_MT-ZxVy365-qA7aFekMrCAkNk0XmqJ2s2991m4Hp1d0e7mF80jI75wSeBlJRTYf0RGjr5NpRKQVWnl-4Qu3fuGeICtgyt9GpHG0iOBal_EVUr8JUEkZrVStMoW4_5Ms3pQW-EZhQ5xEeH8Bw5BOTBcfQ42SEpeH4bH9QZpxogpOdAA7MnbvtxX7fYJ-ce_EBrGcG2P1Mg4NLUjbmeO6kyD82jHT1Gttb_lA_I-fiGpZ9vluOGyWocFeWm6B_nQKgVsGQCYHp_JwR6UJy-Vr7xqUrlEMHautAsRIouSTLNVWOqrjzEIJQDiiiZDN9lBikjsMQFBRhIx_osUa9b17gBfp78nREEzYIUHpidx0WfXZBm-UFO9tn9CpH_AwL2_eq4izSH9vyK-FPlqhMtgCSdMO8ZIq2Fu88g8-_0LMCQpn3rZytCsK7WXZ-wzAetA7H1r0r14qznrZml1oTOdtpVnU3N0MlX_l41B_ubaF0G-QV6aSHqJnLs6-6fFKDIthV-sQ6vi18bX4v77HxAyA6Vt3F4uwabh2HkrNuElJZzE_Z0u0-c33jkS-9Tn","rs_025cd3e962896641016a7ccfab6cd88190994e08f056c3363c",{"_893":867},[3928],{"_49":3929,"_96":914},"**Planning clause scanning for mitigation**",{"_899":3931,"_881":3932,"_860":861,"_883":867},1786564524519,{"_884":3933,"_45":3925,"_909":3934,"_96":911},[],[3929],{"_881":3936,"_860":861,"_883":867},{"_944":3937,"_45":-5,"_888":3938,"_204":-5,"_947":3939,"_96":949},"call_2g9AjyDWj78YRlov0arxFvBf",{"_893":867},{"_355":3940,"_951":-5},[3941,3942],{"_49":3285,"_96":955},{"_49":3943,"_96":955},"origin\thttps://github.com/BigSimmo/Database.git (fetch)\norigin\thttps://github.com/BigSimmo/Database.git (push)\n* work 76a22e4 feat(medications): surface interactions on the record page and ice every verdict\n// Builds `data/medication-interaction-index.json` from the medication catalogue\n// snapshot plus the curated lexicon in `src/lib/medication-interaction-lexicon.ts`.\n//\n// Run with `npm run medications:interactions`. Pass `--check` to verify the\n// committed artefact matches what the current snapshot + lexicon produce (used\n// by `npm run check:medication-interactions` so the two cannot drift apart).\n//\n// WHY A BUILD STEP AT ALL\n// The catalogue's `Key Interactions` rows are prose. Resolving them at runtime\n// would mean shipping the parser and the lexicon to the browser and re-running\n// 523 regex passes per render. More importantly it would make the resolution\n// invisible: a generated artefact can be diffed, reviewed, and pinned by a test,\n// which is what lets a clinician trust the colour on a result row.\n//\n// WHAT \"UNRESOLVED\" MEANS AND WHY IT IS EMITTED, NOT SWALLOWED\n// A row whose counterparty cannot be resolved to catalogue targets is recorded\n// with `resolved: false`. The UI turns any medication carrying such a row grey\n// (\"N rows need manual review\") rather than green. Dropping these rows would\n// manufacture a false all-clear, which is the single most dangerous failure\n// this feature can have.\n\nimport { readFileSync, writeFileSync } from \"node:fs\";\nimport path from \"node:path\";\n\nimport {\n INTERACTION_LEXICON,\n LEXICON_SURFACES_BY_LENGTH,\n selectCatalogueSlugs,\n type LexiconTerm,\n} from \"../src/lib/medication-interaction-lexicon\";\nimport type { MedicationRecord } from \"../src/lib/medications\";\n\nconst SNAPSHOT_PATH = \"data/medications-snapshot.json\";\nconst OUTPUT_PATH = \"data/medication-interaction-index.json\";\n\n/** Severity tokens seen in the catalogue, normalised to a closed vocabulary. */\nconst SEVERITY_BY_TOKEN: Record = {\n CRITICAL: \"critical\",\n HIGH: \"high\",\n MODERATE: \"moderate\",\n CAUTION: \"caution\",\n LOW: \"low\",\n NONE: \"none\",\n SAFE: \"safe\",\n BENEFICIAL: \"beneficial\",\n};\n\nconst SEVERITY_PATTERN = /^\\s*([A-Z][A-Z \\-/]{2,30}?)\\s*[—–-]\\s*([\\s\\S]*)$/;\n\ntype IndexCounterparty = { slug: string; name: string; via: string };\n\n/**\n * The emitted row is deliberately lean: no `note`, no counterparty display\n * names. Both are already available to every consumer — the verbatim text lives\n * on the `MedicationRecord` the page has already loaded (addressed by\n * `rowIndex`), and names come from the top-level `names` map. Duplicating them\n * per row took the artefact to 661 KB, which is a bundle regression for a file\n * that ships to the browser.\n */\ntype IndexRow = {\n rowKey: string;\n rowIndex: number;\n severity: string;\n /** Catalogue slugs this row's counterparty terms resolved to. */\n counterparties: string[];\n /** Lexicon term ids that fired, for auditability. */\n termIds: string[];\n resolved: boolean;\n};\n\ntype IndexEntry = { rows: IndexRow[]; unresolvedRowCount: number };\n\ntype InteractionIndex = {\n version: number;\n generatedFrom: string;\n sourceRowCount: number;\n stats: {\n resolvedRows: number;\n unresolvedRows: number;\n rowsWithCatalogueTarget: number;\n medicationsWithUnresolvedRows: number;\n };\n /** slug → display name, so a counterparty can be named without the snapshot. */\n names: Record;\n bySlug: Record;\n};\n\n/** Dosage-form and route qualifiers that appear in catalogue names but not in prose. */\nconst DOSAGE_FORM_TOKEN =\n /^(ir|sr|xr|mr|cr|odt|lai|im|iv|sl|po|pr|depot|patch|wafer|nasal|mouth|spray|inhaler|topical|cream|gel|drops|syrup|liquid|injection|infusion|oral|buccal|sublingual|transdermal|suppository|tablet|capsule|lozenge|pamoate)$/i;\n\n/**\n * \"Tramadol IR\" → \"Tramadol\"; \"Oxycodone SR / MR\" → \"Oxycodone\";\n * \"Nicotine mouth spray\" → \"Nicotine\". Strips trailing form tokens and the\n * separators between them, iteratively, leaving the drug substance.\n */\nfunction stripDosageForm(name: string): string {\n const tokens = name.split(/\\s+/).filter(Boolean);\n while (tokens.length > 1) {\n const last = tokens[tokens.length - 1];\n if (last === \"/\" || last === \"-\" || DOSAGE_FORM_TOKEN.test(last)) {\n tokens.pop();\n continue;\n }\n break;\n }\n return tokens\n .join(\" \")\n .replace(/[\\s/-]+$/, \"\")\n .trim();\n}\n\nfunction escapeRegExp(value: string): string {\n return value.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n}\n\n/**\n * Whole-word-ish match. Plain `\\b` fails on surfaces ending in a non-word\n * character (e.g. \"p-gp\"), so the boundaries are asserted explicitly against\n * characters that could continue a word.\n */\nfunction mentions(haystack: string, needle: string): boolean {\n const pattern = new RegExp(`(^|[^A-Za-z0-9])${escapeRegExp(needle)}(?![A-Za-z0-9])`, \"i\");\n return pattern.test(haystack);\n}\n\n/**\n * The counterparty segment is the FIRST sentence after the severity token.\n *\n * This is deliberate and load-bearing. Scanning the whole row over-matches:\n * \"HIGH — NSAIDs and Aspirin. SSRIs deplete platelet serotonin … Cover with PPI\n * if combined.\" mentions PPIs only as the mitigation, and a patient on a PPI\n * must not light up as HIGH-interacting. Restricting to the first sentence\n * keeps the counterparty and drops the advice.\n */\nfunction counterpartySegment(value: string): { severityToken: string | null; segment: string } {\n const match = SEVERITY_PATTERN.exec(value);\n const severityToken = match ? match[1].trim() : null;\n const body = (match ? match[2] : value).replace(/\\*\\*/g, \"\").trim();\n const [first = \"\"] = body.split(/(?<=[.;])\\s+/);\n return { severityToken, segment: first };\n}\n\nfunction main(): void {\n const checkOnly = process.argv.includes(\"--check\");\n const snapshotPath = path.resolve(process.cwd(), SNAPSHOT_PATH);\n const records = JSON.parse(readFileSync(snapshotPath, \"utf8\")) as MedicationRecord[];\n\n // Pre-resolve every catalogue term once.\n const termSlugs = new Map();\n for (const term of INTERACTION_LEXICON) {\n if (term.kind === \"catalogue\" && term.select) {\n termSlugs.set(term.id, selectCatalogueSlugs(term.select, records));\n }\n }\n\n // Surface forms for individual catalogue drugs, longest-first so\n // \"Aripiprazole LAI\" wins over \"Aripiprazole\".\n //\n // Catalogue names carry formulation qualifiers the prose never uses: the\n // catalogue says \"Tramadol IR\" and \"Oxycodone SR / MR\" where an interaction\n // row just says \"Tramadol\" or \"Oxycodone\". Indexing only the full name silently\n // loses those matches — a false-negative class, i.e. exactly the direction that\n // produces a wrong green. So each name also contributes its base form with the\n // trailing dosage-form tokens stripped.\n const drugSurfaces = records\n .flatMap((record) => {\n const parts = record.name\n .split(\"/\")\n .map((part) => part.trim())\n .filter((part) => part.length >= 4);\n const surfaces = new Set(parts);\n for (const part of parts) surfaces.add(stripDosageForm(part));\n surfaces.add(stripDosageForm(record.name));\n return Array.from(surfaces)\n .filter((surface) => surface.length >= 4)\n .map((surface) => ({ surface, slug: record.slug, name: record.name }));\n })\n .sort((a, b) => b.surface.length - a.surface.length);\n\n const nameBySlug = new Map(records.map((record) => [record.slug, record.name]));\n const bySlug: Record = {};\n let sourceRowCount = 0;\n let resolvedRows = 0;\n let unresolvedRows = 0;\n let rowsWithCatalogueTarget = 0;\n\n for (const record of records) {\n const rows: IndexRow[] = [];\n\n for (const section of record.sections ?? []) {\n if (section.type !== \"inter\") continue;\n\n section.rows?.forEach((row, rowIndex) => {\n sourceRowCount += 1;\n const value = row.val ?? \"\";\n const { severityToken, segment } = counterpartySegment(value);\n const severity = severityToken ? (SEVERITY_BY_TOKEN[severityToken] ?? \"unknown\") : \"unknown\";\n\n const counterparties = new Map();\n const termIds = new Set();\n let sawClassifiableTerm = false;\n\n // 1. Lexicon terms, longest surface first.\n const consumed: string[] = [];\n for (const { surface, term } of LEXICON_SURFACES_BY_LENGTH) {\n if (!mentions(segment, surface)) continue;\n // A longer surface already covering this text wins (\"thiazide\n // diuretics\" must not also register the generic \"diuretics\").\n if (consumed.some((taken) => taken.includes(surface))) continue;\n consumed.push(surface);\n termIds.add(term.id);\n sawClassifiableTerm = true;\n addTermTargets(term, counterparties, record.slug);\n }\n\n // 2. Individual catalogue drugs named outright.\n for (const { surface, slug } of drugSurfaces) {\n if (slug === record.slug) continue; // never self-interact\n if (!mentions(segment, surface)) continue;\n sawClassifiableTerm = true;\n if (!counterparties.has(slug)) {\n counterparties.set(slug, { slug, name: nameBySlug.get(slug) ?? slug, via: surface });\n }\n }\n\n // A row is resolved when we could classify what it refers to — either\n // catalogue targets, or a known external/non-drug entity. A bare\n // mechanism class (\"CYP3A4 inhibitors\") with no named example is NOT\n // resolved: it could include catalogue drugs we have not enumerated.\n const onlyMechanism =\n termIds.size > 0 &&\n counterparties.size === 0 &&\n Array.from(termIds).every((id) => termKind(id) === \"mechanism\");\n const resolved = sawClassifiableTerm && !onlyMechanism;\n\n if (resolved) resolvedRows += 1;\n else unresolvedRows += 1;\n if (counterparties.size > 0) rowsWithCatalogueTarget += 1;\n\n rows.push({\n rowKey: row.key,\n rowIndex,\n severity,\n counterparties: Array.from(counterparties.keys()).sort(),\n termIds: Array.from(termIds).sort(),\n resolved,\n });\n });\n }\n\n if (rows.length > 0) {\n bySlug[record.slug] = { rows, unresolvedRowCount: rows.filter((row) => !row.resolved).length };\n }\n }\n\n function termKind(id: string): string {\n return INTERACTION_LEXICON.find((term) => term.id === id)?.kind ?? \"mechanism\";\n }\n\n function addTermTargets(term: LexiconTerm, into: Map, sourceSlug: string): void {\n if (term.kind !== \"catalogue\") return;\n for (const slug of termSlugs.get(term.id) ?? []) {\n // A drug is never its own counterparty. Ibuprofen's own row says \"NSAIDs\",\n // and the class resolves to every NSAID including ibuprofen — which would\n // make the drug flag itself the moment the patient is taking it.\n if (slug === sourceSlug || into.has(slug)) continue;\n into.set(slug, { slug, name: nameBySlug.get(slug) ?? slug, via: term.id });\n }\n }\n\n const index: InteractionIndex = {\n version: 1,\n generatedFrom: SNAPSHOT_PATH,\n sourceRowCount,\n stats: {\n resolvedRows,\n unresolvedRows,\n rowsWithCatalogueTarget,\n medicationsWithUnresolvedRows: Object.values(bySlug).filter((entry) => entry.unresolvedRowCount > 0).length,\n },\n names: Object.fromEntries(\n records.map((record) => [record.slug, record.name] as const).sort(([a], [b]) => a.localeCompare(b)),\n ),\n bySlug,\n };\n\n const serialised = `${JSON.stringify(index, null, 2)}\\n`;\n const outputPath = path.resolve(process.cwd(), OUTPUT_PATH);\n\n if (checkOnly) {\n const current = readFileSync(outputPath, \"utf8\");\n if (current !== serialised) {\n console.error(\n `[medication-interactions] ${OUTPUT_PATH} is stale.\\n` +\n \"Run `npm run medications:interactions` and commit the result.\",\n );\n process.exit(1);\n }\n console.log(`[medication-interactions] ${OUTPUT_PATH} is up to date (${sourceRowCount} rows).`);\n return;\n }\n\n writeFileSync(outputPath, serialised);\n console.log(\n `[medication-interactions] wrote ${OUTPUT_PATH}: ${sourceRowCount} rows, ` +\n `${resolvedRows} resolved, ${unresolvedRows} unresolved, ` +\n `${index.stats.medicationsWithUnresolvedRows} medications carry an unresolved row.`,\n );\n}\n\nmain();\n",{"_899":3945,"_881":3946,"_860":861,"_883":867},1786564521508,{"_923":3943,"_925":3947,"_927":3948,"_929":930,"_865":35,"_932":35,"_45":3949,"_934":3950,"_936":937,"_874":117,"_96":938},"/bin/bash -lc \"git remote -v; git branch -vv; sed -n '1,340p' scripts/build-medication-interaction-index.ts\"",[3951],"exec-e67d580c-21d4-4c9d-ac5f-54f20ce2c649","53302",{"_925":3952,"_96":941},"git remote -v; git branch -vv; sed -n '1,340p' scripts/build-medication-interaction-index.ts",{"_881":3954,"_860":861,"_883":867},{"_944":3937,"_45":3955,"_972":3956,"_888":3957,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_025cd3e962896641016a7ccfa8ae908190910ffc0c5145e725","const r = await tools.exec_command({cmd:\"git remote -v; git branch -vv; sed -n '1,340p' scripts/build-medication-interaction-index.ts\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":30000});\ntext(r.output);\n",{"_893":867},{"_881":3959,"_860":861,"_883":867},{"_884":-5,"_905":3960,"_45":3961,"_888":3962,"_909":3963,"_96":911},"gAAAAABqfM-oKNdpALJ5hzkPTMNTEW59myLXH26Sz081cN54jfkzvkH2xXhALmr4djj-WuwLrBKApKlf4n3dee_AQmpT-AQCnDP3KfHGGQH4Bh8jfv-2iUg9M5qEzxvJdA1ps0qkqYxztNO6v9PYIOZe1uJZsWkBWXuNwpA7w653SZz1JSaJZnLKEz3yvTRjzrL3GX6CG2u7oXHjnNTRqA4Rg2QLK3ByAzQZA_bOIU-J7r34fol5Wcqom2R7UG6c9zc7yU0CSWW59hPdmVZPN8k1lDDF0wv_BzQyoRpPeuBKuye6EOJYj8j3E47LT03inAko-IfwGPt7nS2lJG2PXqsf31a-kAF1ZfFiNwtmbzeC5O9OwpsoxmJWNXw4VCDbF0Nodai12Gq9OxLybQ5WOmRvXKzJVgd3K4Xd6RhldV8uSsjDgEwTkexUy7mQncHZIAmMGie5manWfEQMrpsLivuUNGmA27PhJlh1Va3a7XsGNxgvg6jFVw1TpHnLQpqpTzEKJ5xjwe8JbG3Yja8IaDZ79zx8FoIb5tngvr4INsZa5wvfDSYW3vV0R9j_zUvuqSbyd1dHw88mrbzIJ34l9awvPAUsXfw7qZ_Y4gUFajkjy47aG5uTwugJYbSFhHAtR5YLlS4MeG9VI5Np3K8feRVbFRiTts2PCnqtmErAegUqfBX6TvQntu3DbIiXcyGLJoQx6EtsIv7z40XxuhqF3L0KKdwsExdz9Iry0Cg8k85xNN-SGqZjL_lLAPsC0UtUhZm1dRoo1SjWdVOPyVc78AKubPdVNaq3Kjv9v8ZofhVrPKOaUIGG1c2LpAzZyMCuqEEvYB41-uHlDTvGyknNhSm-0GGqVfYVM5O1CP5OZAejJkcADDSd-v1k1PpC-1oPZZgfCSVDwH2uARO4oNAYiflsDT0qk81Hyn3m0oQq6zVsf0jn6d83AWxQoC6CGb1QQpLP2DDWHitSZKqzXhHRp9qh2V2zwpPQfFqHYWpsc9jlzTfPm9ZnO6H3JDra9VL66bNovQhouTktQIVX8dCm3eWuIw6xXvrWwG5d4MXu17L-u40nNisGv3E2BLYD7dw9_o_bDwPXc0ORipRLIfWUwTzEDXimXRR97nIgYH_9RdxNKMcNwxH215g=","rs_025cd3e962896641016a7ccfa747888190bcc7b0e991213183",{"_893":867},[3964],{"_49":3965,"_96":914},"**Investigating script termination behavior**",{"_899":3967,"_881":3968,"_860":861,"_883":867},1786564520683,{"_884":3969,"_45":3961,"_909":3970,"_96":911},[],[3965],{"_881":3972,"_860":861,"_883":867},{"_944":3973,"_45":-5,"_888":3974,"_947":3975,"_96":1055},"call_QISSuBCQzpNozq4V7S4qQgGK",{"_893":867},{"_355":3976,"_951":-5},[3977,3978],{"_49":2805,"_96":955},{"_49":3979,"_96":955},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 ledger:lookup\n> node scripts/branch-review-ledger.mjs lookup HEAD --scope resolve current PR inline review comments\n\n",{"_881":3981,"_860":861,"_883":867},{"_1063":3982,"_944":3973,"_45":3983,"_888":3984,"_204":1067,"_976":-5,"_96":1068},"{\"cell_id\":\"2\",\"yield_time_ms\":30000,\"max_tokens\":40000}","fc_025cd3e962896641016a7ccfa5bc688190b4fdc7f336395e34",{"_893":867},{"_881":3986,"_860":861,"_883":867},{"_884":-5,"_905":3987,"_45":3988,"_888":3989,"_909":3990,"_96":911},"gAAAAABqfM-l4P-sn4cGDS8nE3ojvNTCrRk6QijuX0uLkYdXpkkzfWRCVaGp8f-YjmrcS6y5orbFlPvAlOghkAssWfK4aPIsgoMG8USbywYO6yZxmjf6QIp2UYB33vErumPmFv2dAOwsmUECsUhj7opkCeWqi5N0BwkS6eTz45mhuWBG53Z_pE345TPqleM1j5RQmw7jRTvaFle_TOFwhjfBBM3zIZjExH6b1Vi_9J7NhmdB3i-CCARfK6-7Rz8ZlpyKRBPnlJHzUhVJ25oJe0i2rX_MvsFIxhhijvqBOonGlJPKc4oewcidk8k25Wt86SH_TFCEkWIZnNrLviD8ec2z3xDP6H1tcN0cSug8xomFdWjb6MhF3sjnz3JXhMtmLoycq_Sxmc1URrN8XSNRAvJ8-uWAo7V_c6929fKNFzP3aKAmwg9ce8E_O9jLcebeOlFTCNRNVPSBeFgOl2VDjMAHDWY3nyMoWoyhiyjsu0hXbC0jL19VD8lgTdyDDRLWmYXs0pyTeSIgh0PYC7Qmu0C772lV082BedTUKwbBuO0nfkCeO5ySAbOi44km4uOtHyXjIPdPgsoJGS2xvdSu4JnTcjt6eMPNYTUfRcQX0M5I4wz7UpKrKkU-MPxc7dhxf4JYW7vtVX468N9ty5yjem4Ry_TkXbKUYAqzHTXjidavmU6WjyonIDhIbbXiJKYGxVRnuPgzArrOwdzGnnAHCRjE9f2OhweMBt5bEAr4FCfpa_ppaHQvc35dWAug90-zrWeP_ss4phsvouHWEFIox90B2XLg-mAGSXICdq5hEA2rRZMFrW1X5P_OmA-57N68OF83-xlffsT7h4nBPqYjyXKE5HOhkNCm-KBBR8wGQnJLqygND364aTzIVdpSbSdD_NOtIzOrAnM9jcWznYlQx2of65sMBw6bJod3sP41IT5sgje2YrVkX9o=","rs_025cd3e962896641016a7ccfa4dc7881909762d8e841211539",{"_893":867},[],{"_899":3992,"_881":3993,"_860":861,"_883":867},1786564517725,{"_884":3994,"_45":3988,"_909":3995,"_96":911},[],[],{"_899":3997,"_881":3998,"_860":861,"_883":867},1786564516494,{"_923":3999,"_925":4000,"_927":4001,"_929":930,"_865":4002,"_932":35,"_45":4003,"_934":4004,"_936":937,"_874":117,"_96":938},"\n> prompt-for-codex-medical-knowledge-base@0.1.0 ledger:lookup\n> node scripts/branch-review-ledger.mjs lookup HEAD --scope resolve current PR inline review comments\n\nref: HEAD\nhead: 76a22e4a1106a205fe9c3055541c3404bf1021a2\nscope: exact \"resolve current PR inline review comments\"\nfiles: docs/branch-review-ledger.md, docs/archive/branch-review-ledger-2026-q3.md\n\nNOT REVIEWED at this HEAD and scope.\n\n-- remotes/branches --\norigin\thttps://github.com/BigSimmo/Database.git (fetch)\norigin\thttps://github.com/BigSimmo/Database.git (push)\n* work 76a22e4 feat(medications): surface interactions on the record page and ice every verdict\n\n-- relevant sources --\n// Builds `data/medication-interaction-index.json` from the medication catalogue\n// snapshot plus the curated lexicon in `src/lib/medication-interaction-lexicon.ts`.\n//\n// Run with `npm run medications:interactions`. Pass `--check` to verify the\n// committed artefact matches what the current snapshot + lexicon produce (used\n// by `npm run check:medication-interactions` so the two cannot drift apart).\n//\n// WHY A BUILD STEP AT ALL\n// The catalogue's `Key Interactions` rows are prose. Resolving them at runtime\n// would mean shipping the parser and the lexicon to the browser and re-running\n// 523 regex passes per render. More importantly it would make the resolution\n// invisible: a generated artefact can be diffed, reviewed, and pinned by a test,\n// which is what lets a clinician trust the colour on a result row.\n//\n// WHAT \"UNRESOLVED\" MEANS AND WHY IT IS EMITTED, NOT SWALLOWED\n// A row whose counterparty cannot be resolved to catalogue targets is recorded\n// with `resolved: false`. The UI turns any medication carrying such a row grey\n// (\"N rows need manual review\") rather than green. Dropping these rows would\n// manufacture a false all-clear, which is the single most dangerous failure\n// this feature can have.\n\nimport { readFileSync, writeFileSync } from \"node:fs\";\nimport path from \"node:path\";\n\nimport {\n INTERACTION_LEXICON,\n LEXICON_SURFACES_BY_LENGTH,\n selectCatalogueSlugs,\n type LexiconTerm,\n} from \"../src/lib/medication-interaction-lexicon\";\nimport type { MedicationRecord } from \"../src/lib/medications\";\n\nconst SNAPSHOT_PATH = \"data/medications-snapshot.json\";\nconst OUTPUT_PATH = \"data/medication-interaction-index.json\";\n\n/** Severity tokens seen in the catalogue, normalised to a closed vocabulary. */\nconst SEVERITY_BY_TOKEN: Record = {\n CRITICAL: \"critical\",\n HIGH: \"high\",\n MODERATE: \"moderate\",\n CAUTION: \"caution\",\n LOW: \"low\",\n NONE: \"none\",\n SAFE: \"safe\",\n BENEFICIAL: \"beneficial\",\n};\n\nconst SEVERITY_PATTERN = /^\\s*([A-Z][A-Z \\-/]{2,30}?)\\s*[—–-]\\s*([\\s\\S]*)$/;\n\ntype IndexCounterparty = { slug: string; name: string; via: string };\n\n/**\n * The emitted row is deliberately lean: no `note`, no counterparty display\n * names. Both are already available to every consumer — the verbatim text lives\n * on the `MedicationRecord` the page has already loaded (addressed by\n * `rowIndex`), and names come from the top-level `names` map. Duplicating them\n * per row took the artefact to 661 KB, which is a bundle regression for a file\n * that ships to the browser.\n */\ntype IndexRow = {\n rowKey: string;\n rowIndex: number;\n severity: string;\n /** Catalogue slugs this row's counterparty terms resolved to. */\n counterparties: string[];\n /** Lexicon term ids that fired, for auditability. */\n termIds: string[];\n resolved: boolean;\n};\n\ntype IndexEntry = { rows: IndexRow[]; unresolvedRowCount: number };\n\ntype InteractionIndex = {\n version: number;\n generatedFrom: string;\n sourceRowCount: number;\n stats: {\n resolvedRows: number;\n unresolvedRows: number;\n rowsWithCatalogueTarget: number;\n medicationsWithUnresolvedRows: number;\n };\n /** slug → display name, so a counterparty can be named without the snapshot. */\n names: Record;\n bySlug: Record;\n};\n\n/** Dosage-form and route qualifiers that appear in catalogue names but not in prose. */\nconst DOSAGE_FORM_TOKEN =\n /^(ir|sr|xr|mr|cr|odt|lai|im|iv|sl|po|pr|depot|patch|wafer|nasal|mouth|spray|inhaler|topical|cream|gel|drops|syrup|liquid|injection|infusion|oral|buccal|sublingual|transdermal|suppository|tablet|capsule|lozenge|pamoate)$/i;\n\n/**\n * \"Tramadol IR\" → \"Tramadol\"; \"Oxycodone SR / MR\" → \"Oxycodone\";\n * \"Nicotine mouth spray\" → \"Nicotine\". Strips trailing form tokens and the\n * separators between them, iteratively, leaving the drug substance.\n */\nfunction stripDosageForm(name: string): string {\n const tokens = name.split(/\\s+/).filter(Boolean);\n while (tokens.length > 1) {\n const last = tokens[tokens.length - 1];\n if (last === \"/\" || last === \"-\" || DOSAGE_FORM_TOKEN.test(last)) {\n tokens.pop();\n continue;\n }\n break;\n }\n return tokens\n .join(\" \")\n .replace(/[\\s/-]+$/, \"\")\n .trim();\n}\n\nfunction escapeRegExp(value: string): string {\n return value.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n}\n\n/**\n * Whole-word-ish match. Plain `\\b` fails on surfaces ending in a non-word\n * character (e.g. \"p-gp\"), so the boundaries are asserted explicitly against\n * characters that could continue a word.\n */\nfunction mentions(haystack: string, needle: string): boolean {\n const pattern = new RegExp(`(^|[^A-Za-z0-9])${escapeRegExp(needle)}(?![A-Za-z0-9])`, \"i\");\n return pattern.test(haystack);\n}\n\n/**\n * The counterparty segment is the FIRST sentence after the severity token.\n *\n * This is deliberate and load-bearing. Scanning the whole row over-matches:\n * \"HIGH — NSAIDs and Aspirin. SSRIs deplete platelet serotonin … Cover with PPI\n * if combined.\" mentions PPIs only as the mitigation, and a patient on a PPI\n * must not light up as HIGH-interacting. Restricting to the first sentence\n * keeps the counterparty and drops the advice.\n */\nfunction counterpartySegment(value: string): { severityToken: string | null; segment: string } {\n const match = SEVERITY_PATTERN.exec(value);\n const severityToken = match ? match[1].trim() : null;\n const body = (match ? match[2] : value).replace(/\\*\\*/g, \"\").trim();\n const [first = \"\"] = body.split(/(?<=[.;])\\s+/);\n return { severityToken, segment: first };\n}\n\nfunction main(): void {\n const checkOnly = process.argv.includes(\"--check\");\n const snapshotPath = path.resolve(process.cwd(), SNAPSHOT_PATH);\n const records = JSON.parse(readFileSync(snapshotPath, \"utf8\")) as MedicationRecord[];\n\n // Pre-resolve every catalogue term once.\n const termSlugs = new Map();\n for (const term of INTERACTION_LEXICON) {\n if (term.kind === \"catalogue\" && term.select) {\n termSlugs.set(term.id, selectCatalogueSlugs(term.select, records));\n }\n }\n\n // Surface forms for individual catalogue drugs, longest-first so\n // \"Aripiprazole LAI\" wins over \"Aripiprazole\".\n //\n // Catalogue names carry formulation qualifiers the prose never uses: the\n // catalogue says \"Tramadol IR\" and \"Oxycodone SR / MR\" where an interaction\n // row just says \"Tramadol\" or \"Oxycodone\". Indexing only the full name silently\n // loses those matches — a false-negative class, i.e. exactly the direction that\n // produces a wrong green. So each name also contributes its base form with the\n // trailing dosage-form tokens stripped.\n const drugSurfaces = records\n .flatMap((record) => {\n const parts = record.name\n .split(\"/\")\n .map((part) => part.trim())\n .filter((part) => part.length >= 4);\n const surfaces = new Set(parts);\n for (const part of parts) surfaces.add(stripDosageForm(part));\n surfaces.add(stripDosageForm(record.name));\n return Array.from(surfaces)\n .filter((surface) => surface.length >= 4)\n .map((surface) => ({ surface, slug: record.slug, name: record.name }));\n })\n .sort((a, b) => b.surface.length - a.surface.length);\n\n const nameBySlug = new Map(records.map((record) => [record.slug, record.name]));\n const bySlug: Record = {};\n let sourceRowCount = 0;\n let resolvedRows = 0;\n let unresolvedRows = 0;\n let rowsWithCatalogueTarget = 0;\n\n for (const record of records) {\n const rows: IndexRow[] = [];\n\n for (const section of record.sections ?? []) {\n if (section.type !== \"inter\") continue;\n\n section.rows?.forEach((row, rowIndex) => {\n sourceRowCount += 1;\n const value = row.val ?? \"\";\n const { severityToken, segment } = counterpartySegment(value);\n const severity = severityToken ? (SEVERITY_BY_TOKEN[severityToken] ?? \"unknown\") : \"unknown\";\n\n const counterparties = new Map();\n const termIds = new Set();\n let sawClassifiableTerm = false;\n\n // 1. Lexicon terms, longest surface first.\n const consumed: string[] = [];\n for (const { surface, term } of LEXICON_SURFACES_BY_LENGTH) {\n if (!mentions(segment, surface)) continue;\n // A longer surface already covering this text wins (\"thiazide\n // diuretics\" must not also register the generic \"diuretics\").\n if (consumed.some((taken) => taken.includes(surface))) continue;\n consumed.push(surface);\n termIds.add(term.id);\n sawClassifiableTerm = true;\n addTermTargets(term, counterparties, record.slug);\n }\n\n // 2. Individual catalogue drugs named outright.\n for (const { surface, slug } of drugSurfaces) {\n if (slug === record.slug) continue; // never self-interact\n if (!mentions(segment, surface)) continue;\n sawClassifiableTerm = true;\n if (!counterparties.has(slug)) {\n counterparties.set(slug, { slug, name: nameBySlug.get(slug) ?? slug, via: surface });\n }\n }\n\n // A row is resolved when we could classify what it refers to — either\n // catalogue targets, or a known external/non-drug entity. A bare\n // mechanism class (\"CYP3A4 inhibitors\") with no named example is NOT\n // resolved: it could include catalogue drugs we have not enumerated.\n const onlyMechanism =\n termIds.size > 0 &&\n counterparties.size === 0 &&\n Array.from(termIds).every((id) => termKind(id) === \"mechanism\");\n const resolved = sawClassifiableTerm && !onlyMechanism;\n\n if (resolved) resolvedRows += 1;\n else unresolvedRows += 1;\n if (counterparties.size > 0) rowsWithCatalogueTarget += 1;\n\n rows.push({\n rowKey: row.key,\n rowIndex,\n severity,\n counterparties: Array.from(counterparties.keys()).sort(),\n termIds: Array.from(termIds).sort(),\n resolved,\n });\n });\n }\n\n if (rows.length > 0) {\n bySlug[record.slug] = { rows, unresolvedRowCount: rows.filter((row) => !row.resolved).length };\n }\n }\n\n function termKind(id: string): string {\n return INTERACTION_LEXICON.find((term) => term.id === id)?.kind ?? \"mechanism\";\n }\n\n function addTermTargets(term: LexiconTerm, into: Map, sourceSlug: string): void {\n if (term.kind !== \"catalogue\") return;\n for (const slug of termSlugs.get(term.id) ?? []) {\n // A drug is never its own counterparty. Ibuprofen's own row says \"NSAIDs\",\n // and the class resolves to every NSAID including ibuprofen — which would\n // make the drug flag itself the moment the patient is taking it.\n if (slug === sourceSlug || into.has(slug)) continue;\n into.set(slug, { slug, name: nameBySlug.get(slug) ?? slug, via: term.id });\n }\n }\n\n const index: InteractionIndex = {\n version: 1,\n generatedFrom: SNAPSHOT_PATH,\n sourceRowCount,\n stats: {\n resolvedRows,\n unresolvedRows,\n rowsWithCatalogueTarget,\n medicationsWithUnresolvedRows: Object.values(bySlug).filter((entry) => entry.unresolvedRowCount > 0).length,\n },\n names: Object.fromEntries(\n records.map((record) => [record.slug, record.name] as const).sort(([a], [b]) => a.localeCompare(b)),\n ),\n bySlug,\n };\n\n const serialised = `${JSON.stringify(index, null, 2)}\\n`;\n const outputPath = path.resolve(process.cwd(), OUTPUT_PATH);\n\n if (checkOnly) {\n const current = readFileSync(outputPath, \"utf8\");\n if (current !== serialised) {\n console.error(\n `[medication-interactions] ${OUTPUT_PATH} is stale.\\n` +\n \"Run `npm run medications:interactions` and commit the result.\",\n );\n process.exit(1);\n }\n console.log(`[medication-interactions] ${OUTPUT_PATH} is up to date (${sourceRowCount} rows).`);\n return;\n }\n\n writeFileSync(outputPath, serialised);\n console.log(\n `[medication-interactions] wrote ${OUTPUT_PATH}: ${sourceRowCount} rows, ` +\n `${resolvedRows} resolved, ${unresolvedRows} unresolved, ` +\n `${index.stats.medicationsWithUnresolvedRows} medications carry an unresolved row.`,\n );\n}\n\nmain();\n// Patient-medication-list → drug-interaction evaluation.\n//\n// The companion to `medication-patient-alerts.ts`. That module answers \"does\n// this patient's *physiology* change how I use this drug?\"; this one answers\n// \"does this drug collide with something the patient is *already taking*?\".\n// Both are pure and framework-free so the prescribing workspace, the medication\n// detail page, and unit tests can share them.\n//\n// Input data is the generated `data/medication-interaction-index.json` (see\n// `scripts/build-medication-interaction-index.ts`), which carries, per source\n// medication, one entry per `Key Interactions` row: normalised severity, the\n// resolved catalogue counterparties, and the verbatim source text.\n//\n// THE ONE INVARIANT THAT MATTERS\n// `success` (green) is only reachable when every row on the medication resolved.\n// A medication carrying an unresolved row returns `highestTone: null` with a\n// non-zero `unresolvedRowCount`, and the render layer must show that as neutral\n// grey with a \"needs manual review\" note — never as an all-clear. Missing\n// analysis is not the same as a negative finding.\n\nimport interactionIndex from \"../../data/medication-interaction-index.json\";\nimport { SEMANTIC_TONE_PRIORITY, type SemanticTone } from \"@/lib/semantic-tone\";\n\nexport type InteractionSeverity =\n \"critical\" | \"high\" | \"moderate\" | \"caution\" | \"low\" | \"none\" | \"safe\" | \"beneficial\" | \"unknown\";\n\nexport type MedicationInteraction = {\n /** Stable id for React keys and test ids. */\n id: string;\n counterpartySlug: string;\n counterpartyName: string;\n /**\n * Lexicon term ids that fired on this row, for auditability. Row-level, not\n * per-counterparty: a row naming \"MAOIs, Tramadol\" reports both terms for\n * either match. Empty when the row resolved purely by drug name.\n */\n matchedTerms: string[];\n severity: InteractionSeverity;\n tone: SemanticTone;\n /** `row.key` — \"Pharmacodynamic\", \"Pharmacokinetic\", \"Triple Whammy\", … */\n kind: string;\n /** VERBATIM catalogue row text. Never paraphrased. */\n note: string;\n};\n\nexport type MedicationInteractionResult = {\n interactions: MedicationInteraction[];\n counts: Record;\n /** Highest tone across matched interactions, or null when none matched. */\n highestTone: SemanticTone | null;\n /**\n * Interaction rows on this medication whose counterparty could not be\n * machine-resolved. Non-zero must suppress any green verdict.\n */\n unresolvedRowCount: number;\n /** Total interaction rows the catalogue carries for this medication. */\n totalRowCount: number;\n};\n\ntype IndexRow = {\n rowKey: string;\n rowIndex: number;\n severity: string;\n counterparties: string[];\n termIds: string[];\n resolved: boolean;\n};\ntype InteractionIndexShape = {\n version: number;\n sourceRowCount: number;\n names: Record;\n bySlug: Record;\n};\n\nconst INDEX = interactionIndex as unknown as InteractionIndexShape;\n\n/** Display name for a catalogue slug, falling back to the slug itself. */\nexport function medicationDisplayName(slug: string): string {\n return INDEX.names[slug] ?? slug;\n}\n\nexport type MedicationOption = { slug: string; name: string };\n\nlet cachedOptions: MedicationOption[] | null = null;\n\n/**\n * Every catalogue medication as a pickable `{ slug, name }`, name-sorted.\n *\n * Sourced from the interaction index rather than the 3.5 MB catalogue snapshot:\n * the picker only needs slugs and names, and the index is already loaded on the\n * surfaces that host the picker.\n */\nexport function catalogueMedicationOptions(): MedicationOption[] {\n cachedOptions ??= Object.entries(INDEX.names)\n .map(([slug, name]) => ({ slug, name }))\n .sort((a, b) => a.name.localeCompare(b.name));\n return cachedOptions;\n}\n\n/** True when the slug names a real catalogue medication. */\nexport function isCatalogueMedicationSlug(slug: string): boolean {\n return Object.hasOwn(INDEX.names, slug);\n}\n\nexport const SEVERITY_TONE: Record = {\n critical: \"danger\",\n high: \"danger\",\n moderate: \"warning\",\n caution: \"warning\",\n low: \"success\",\n none: \"success\",\n safe: \"success\",\n beneficial: \"success\",\n // An unparsed severity token must not be optimistic.\n unknown: \"neutral\",\n};\n\nconst EMPTY_COUNTS: Record = {\n danger: 0,\n warning: 0,\n clinical: 0,\n success: 0,\n neutral: 0,\n info: 0,\n};\n\nconst SEVERITY_ORDER: InteractionSeverity[] = [\n \"critical\",\n \"high\",\n \"moderate\",\n \"caution\",\n \"unknown\",\n \"low\",\n \"none\",\n \"safe\",\n \"beneficial\",\n];\n\nfunction normaliseSeverity(value: string): InteractionSeverity {\n return (SEVERITY_ORDER as string[]).includes(value) ? (value as InteractionSeverity) : \"unknown\";\n}\n\n/** Total interaction rows the catalogue carries for a medication. */\nexport function interactionRowCount(slug: string): number {\n return INDEX.bySlug[slug]?.rows.length ?? 0;\n}\n\n/**\n * Evaluate one medication against the patient's current medication list.\n *\n * `patientMedicationSlugs` are catalogue slugs. The source medication is\n * excluded automatically, so a patient already taking the drug being viewed does\n * not produce a self-interaction.\n */\nexport function evaluateMedicationInteractions(\n slug: string,\n patientMedicationSlugs: readonly string[],\n /**\n * The medication's own record, when the caller has it. Used to recover the\n * verbatim `Key Interactions` row text by index — that text is deliberately\n * not duplicated into the generated index (see the build script). Without a\n * record the interaction still reports correctly, just with an empty `note`.\n */\n record?: { sections?: { type: string; rows?: { key: string; val: string }[] }[] } | null,\n): MedicationInteractionResult {\n const entry = INDEX.bySlug[slug];\n if (!entry) {\n return {\n interactions: [],\n counts: { ...EMPTY_COUNTS },\n highestTone: null,\n unresolvedRowCount: 0,\n totalRowCount: 0,\n };\n }\n\n const patient = new Set(patientMedicationSlugs.filter((value) => value !== slug));\n const interactions: MedicationInteraction[] = [];\n const sourceRows = record?.sections?.find((section) => section.type === \"inter\")?.rows ?? [];\n\n for (const row of entry.rows) {\n for (const counterpartySlug of row.counterparties) {\n if (!patient.has(counterpartySlug)) continue;\n const severity = normaliseSeverity(row.severity);\n interactions.push({\n id: `${slug}:${row.rowIndex}:${counterpartySlug}`,\n counterpartySlug,\n counterpartyName: medicationDisplayName(counterpartySlug),\n matchedTerms: row.termIds,\n severity,\n tone: SEVERITY_TONE[severity],\n kind: row.rowKey,\n note: sourceRows[row.rowIndex]?.val ?? \"\",\n });\n }\n }\n\n interactions.sort((a, b) => {\n const byTone = SEMANTIC_TONE_PRIORITY[b.tone] - SEMANTIC_TONE_PRIORITY[a.tone];\n if (byTone !== 0) return byTone;\n const bySeverity = SEVERITY_ORDER.indexOf(a.severity) - SEVERITY_ORDER.indexOf(b.severity);\n if (bySeverity !== 0) return bySeverity;\n return a.counterpartyName.localeCompare(b.counterpartyName);\n });\n\n const counts: Record = { ...EMPTY_COUNTS };\n for (const interaction of interactions) counts[interaction.tone] += 1;\n\n return {\n interactions,\n counts,\n highestTone: interactions[0]?.tone ?? null,\n unresolvedRowCount: entry.unresolvedRowCount,\n totalRowCount: entry.rows.length,\n };\n}\n\n// ---------------------------------------------------------------------------\n// Composition with the physiology engine\n// ---------------------------------------------------------------------------\n\nexport type MedicationVerdict = {\n tone: SemanticTone;\n /** True when something prevented a complete assessment (grey, not green). */\n incomplete: boolean;\n interactionCount: number;\n considerationCount: number;\n unresolvedRowCount: number;\n};\n\n/**\n * Fold the physiology considerations and the interaction matches into the single\n * tone a result row's border wears.\n *\n * Precedence is the shared `SEMANTIC_TONE_PRIORITY` ladder (danger 6 → info 1),\n * with one override that is the whole point of the function: if either engine\n * reports something it could not assess, a would-be `success` degrades to\n * `neutral`. Green must be unreachable on incomplete data — the same fail-safe\n * `evaluatePatientAlerts` already applies through its `unassessed` list.\n */\nexport function composeMedicationVerdict(input: {\n considerationTone: SemanticTone | null;\n considerationCount: number;\n unassessedCount: number;\n interactionTone: SemanticTone | null;\n interactionCount: number;\n unresolvedRowCount: number;\n}): MedicationVerdict {\n const incomplete = input.unassessedCount > 0 || input.unresolvedRowCount > 0;\n const candidates = [input.considerationTone, input.interactionTone].filter(\n (tone): tone is SemanticTone => tone !== null,\n );\n\n let tone: SemanticTone = candidates.length\n ? candidates.reduce((best, current) =>\n SEMANTIC_TONE_PRIORITY[current] > SEMANTIC_TONE_PRIORITY[best] ? current : best,\n )\n : \"success\";\n\n if (incomplete && tone === \"success\") tone = \"neutral\";\n\n return {\n tone,\n incomplete,\n interactionCount: input.interactionCount,\n considerationCount: input.considerationCount,\n unresolvedRowCount: input.unresolvedRowCount,\n };\n}\n min={min}\n max={max}\n value={text}\n onChange={(event) => {\n const raw = event.target.value;\n setText(raw);\n // Commit only in-range numbers; an empty or out-of-range entry commits\n // null so the alert engine treats it as a missing input (surfaced as\n // \"unassessed\") rather than acting on a physiologically impossible value.\n const next = parseNumber(raw);\n onChange(next !== null && next >= min && next <= max ? next : null);\n }}\n error={outOfRange ? `Enter ${min}–${max}${unit ? ` ${unit}` : \"\"}.` : undefined}\n className=\"nums\"\n data-testid={testId}\n />\n );\n}\n\n/**\n * Search-and-add list of what the patient is currently taking.\n *\n * Restricted to catalogue medications on purpose: an interaction can only be\n * checked against a drug the catalogue actually carries, so accepting free text\n * would let a clinician enter \"warfarin\", see no alert, and read that as an\n * all-clear when nothing was ever checked.\n */\nfunction MedicationPicker({\n selected,\n onToggle,\n resetNonce,\n}: {\n selected: string[];\n onToggle: (slug: string) => void;\n resetNonce: number;\n}) {\n const [term, setTerm] = useState(\"\");\n const listId = useId();\n\n // Clearing the profile should empty the search box too.\n const [syncedNonce, setSyncedNonce] = useState(resetNonce);\n if (syncedNonce !== resetNonce) {\n setSyncedNonce(resetNonce);\n setTerm(\"\");\n }\n\n const options = catalogueMedicationOptions();\n const selectedSet = new Set(selected);\n const query = term.trim().toLowerCase();\n const matches = query\n ? options.filter((option) => option.name.toLowerCase().includes(query) && !selectedSet.has(option.slug)).slice(0, 8)\n : [];\n\n return (\n
\n Current medications\n\n {selected.length > 0 ? (\n
\n {selected.map((slug) => (\n
\n onToggle(slug)}\n data-testid={`patient-medication-${slug}`}\n aria-label={`Remove ${medicationDisplayName(slug)}`}\n className={cn(segmentBase, segmentActive, \"inline-flex items-center gap-1.5\")}\n >\n {medicationDisplayName(slug)}\n \n \n
\n ))}\n
\n ) : null}\n\n setTerm(event.target.value)}\n placeholder=\"Search medications to add…\"\n aria-describedby={listId}\n data-testid=\"patient-medication-search\"\n />\n\n
\n {matches.map((option) => (\n (null);\n const [open, setOpen] = useState(false);\n\n useEffect(() => {\n const phoneMediaQuery = window.matchMedia(\"(max-width: 639px)\");\n const sync = () => {\n setHost(phoneMediaQuery.matches ? document.getElementById(patientDetailsAddonSlotId) : null);\n };\n sync();\n phoneMediaQuery.addEventListener(\"change\", sync);\n // The dock (and therefore the slot) mounts and unmounts with the composer,\n // so watch for it rather than assuming it exists on first paint.\n const observer = new MutationObserver(sync);\n observer.observe(document.body, { childList: true, subtree: true });\n return () => {\n phoneMediaQuery.removeEventListener(\"change\", sync);\n observer.disconnect();\n };\n }, []);\n\n // Count the entered dimensions, not just the medications, so the badge means\n // \"how much context is loaded\" rather than \"how many drugs\".\n const enteredCount = countEnteredFields(profile);\n\n const sheet = (\n setOpen(false)}\n title=\"Patient details\"\n description=\"Anonymous physiology and current medications. Cleared when the tab closes.\"\n mobilePlacement=\"bottom\"\n testId=\"patient-details-sheet\"\n >\n \n \n );\n\n if (!host) {\n // Above the phone breakpoint the panel is already inline on these surfaces,\n // so there is nothing to render — but keep the sheet mounted if it is open\n // so a resize mid-edit does not drop the dialog and the focus with it.\n return open ? sheet : null;\n }\n\n return (\n <>\n {createPortal(\n
\n setOpen(true)}\n data-testid=\"patient-details-dock-action\"\n aria-haspopup=\"dialog\"\n aria-expanded={open}\n className={cn(\"patient-details-fab__button\", !isEmpty && \"patient-details-fab__button--active\")}\n >\n \n Patient details\n {enteredCount > 0 ? (\n \n {enteredCount}\n \n ) : null}\n {/* The count is decorative; the real state goes to assistive tech here. */}\n \n {isEmpty ? \"No patient details entered\" : `${enteredCount} details entered`}\n \n \n \n
,\n host,\n )}\n {sheet}\n \n );\n}\n\n/** How many profile dimensions carry a value. Drives the pill's count badge. */\nfunction countEnteredFields(profile: {\n ageYears?: number | null;\n egfr?: number | null;\n crcl?: number | null;\n scr?: number | null;\n qtc?: number | null;\n hepatic?: string | null;\n pregnant?: boolean;\n breastfeeding?: boolean;\n allergies?: string[];\n medications?: string[];\n}): number {\n let count = 0;\n for (const value of [profile.ageYears, profile.egfr, profile.crcl, profile.scr, profile.qtc]) {\n if (typeof value === \"number\" && Number.isFinite(value)) count += 1;\n }\n if (profile.hepatic && profile.hepatic !== \"none\") count += 1;\n if (profile.pregnant) count += 1;\n if (profile.breastfeeding) count += 1;\n count += profile.allergies?.length ?? 0;\n count += profile.medications?.length ?? 0;\n return count;\n}\n\n-- tests --\nimport { describe, expect, it } from \"vitest\";\n\nimport { getMedicationRecord } from \"@/lib/medication-snapshot\";\nimport {\n composeMedicationVerdict,\n evaluateMedicationInteractions,\n interactionRowCount,\n medicationDisplayName,\n SEVERITY_TONE,\n} from \"@/lib/medication-interactions\";\n\ndescribe(\"evaluateMedicationInteractions\", () => {\n it(\"matches a drug named outright in the counterparty sentence\", () => {\n // Sertraline's CRITICAL row: \"MAOIs, Tramadol, Tapentadol, St John's Wort.\"\n const result = evaluateMedicationInteractions(\"sertraline\", [\"tramadol-ir\"]);\n expect(result.interactions).toHaveLength(1);\n expect(result.interactions[0]?.counterpartySlug).toBe(\"tramadol-ir\");\n expect(result.interactions[0]?.severity).toBe(\"critical\");\n expect(result.interactions[0]?.tone).toBe(\"danger\");\n expect(result.highestTone).toBe(\"danger\");\n });\n\n it(\"matches through a resolved class term\", () => {\n // The same row names \"MAOIs\"; phenelzine is reached via the class, not by name.\n const result = evaluateMedicationInteractions(\"sertraline\", [\"phenelzine\"]);\n expect(result.interactions[0]?.counterpartySlug).toBe(\"phenelzine\");\n expect(result.interactions[0]?.counterpartyName).toBe(\"Phenelzine\");\n expect(result.interactions[0]?.matchedTerms).toContain(\"maois\");\n expect(result.interactions[0]?.tone).toBe(\"danger\");\n });\n\n it(\"renders the verbatim catalogue row text when given the record\", () => {\n const record = getMedicationRecord(\"sertraline\");\n const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\"], record);\n expect(result.interactions[0]?.note).toContain(\"NSAIDs\");\n expect(result.interactions[0]?.note).toMatch(/^(HIGH|CRITICAL)/);\n });\n\n it(\"still reports the interaction without a record, just with no note text\", () => {\n const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\"]);\n expect(result.interactions).toHaveLength(1);\n expect(result.interactions[0]?.note).toBe(\"\");\n });\n\n it(\"returns no matches for a patient list with nothing in common\", () => {\n const result = evaluateMedicationInteractions(\"sertraline\", [\"paracetamol\"]);\n expect(result.interactions).toHaveLength(0);\n expect(result.highestTone).toBeNull();\n });\n\n it(\"never reports a medication as interacting with itself\", () => {\n const result = evaluateMedicationInteractions(\"ibuprofen\", [\"ibuprofen\"]);\n expect(result.interactions.every((item) => item.counterpartySlug !== \"ibuprofen\")).toBe(true);\n });\n\n it(\"sorts the most severe interaction first\", () => {\n const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\", \"tramadol-ir\"]);\n expect(result.interactions.length).toBeGreaterThanOrEqual(2);\n expect(result.interactions[0]?.severity).toBe(\"critical\");\n });\n\n it(\"carries the unresolved row count for a medication the parser could not fully read\", () => {\n // Bupropion's CYP2D6-substrate row has no enumerable counterparty.\n const result = evaluateMedicationInteractions(\"bupropion-sr\", []);\n expect(result.unresolvedRowCount).toBeGreaterThan(0);\n expect(result.totalRowCount).toBeGreaterThanOrEqual(result.unresolvedRowCount);\n });\n\n it(\"returns an empty result for an unknown slug rather than throwing\", () => {\n const result = evaluateMedicationInteractions(\"not-a-real-drug\", [\"sertraline\"]);\n expect(result.interactions).toHaveLength(0);\n expect(result.totalRowCount).toBe(0);\n expect(interactionRowCount(\"not-a-real-drug\")).toBe(0);\n });\n\n it(\"names counterparties from the index, falling back to the slug\", () => {\n expect(medicationDisplayName(\"tramadol-ir\")).toBe(\"Tramadol IR\");\n expect(medicationDisplayName(\"not-a-real-drug\")).toBe(\"not-a-real-drug\");\n });\n\n it(\"maps every severity to a tone, and never maps an unknown severity to success\", () => {\n expect(SEVERITY_TONE.critical).toBe(\"danger\");\n expect(SEVERITY_TONE.moderate).toBe(\"warning\");\n expect(SEVERITY_TONE.low).toBe(\"success\");\n expect(SEVERITY_TONE.unknown).toBe(\"neutral\");\n });\n});\n\ndescribe(\"composeMedicationVerdict\", () => {\n const base = {\n considerationTone: null,\n considerationCount: 0,\n unassessedCount: 0,\n interactionTone: null,\n interactionCount: 0,\n unresolvedRowCount: 0,\n };\n\n it(\"is green when both engines ran clean\", () => {\n expect(composeMedicationVerdict(base).tone).toBe(\"success\");\n expect(composeMedicationVerdict(base).incomplete).toBe(false);\n });\n\n it(\"degrades green to grey when an interaction row could not be resolved\", () => {\n const verdict = composeMedicationVerdict({ ...base, unresolvedRowCount: 2 });\n expect(verdict.tone).toBe(\"neutral\");\n expect(verdict.incomplete).toBe(true);\n });\n\n it(\"degrades green to grey when a physiology gate was unassessed\", () => {\n expect(composeMedicationVerdict({ ...base, unassessedCount: 1 }).tone).toBe(\"neutral\");\n });\n\n it(\"keeps danger even when data is incomplete — a real finding outranks the caveat\", () => {\n const verdict = composeMedicationVerdict({\n ...base,\n interactionTone: \"danger\",\n interactionCount: 1,\n unresolvedRowCount: 3,\n });\n expect(verdict.tone).toBe(\"danger\");\n expect(verdict.incomplete).toBe(true);\n });\n\n it(\"takes the highest tone across both engines\", () => {\n expect(composeMedicationVerdict({ ...base, considerationTone: \"warning\", interactionTone: \"danger\" }).tone).toBe(\n \"danger\",\n );\n expect(composeMedicationVerdict({ ...base, considerationTone: \"danger\", interactionTone: \"warning\" }).tone).toBe(\n \"danger\",\n );\n });\n});\n// Regression pins for the curated interaction lexicon.\n//\n// The lexicon is hand-maintained, so the failure it invites is silent decay: an\n// edit that narrows a selector, or a catalogue refresh that renames a subclass,\n// quietly turns resolved rows into unresolved ones. Unresolved rows render grey\n// rather than green, so decay is fail-safe — but it is still a loss of function\n// nobody would notice without a pin.\n//\n// The counts below are therefore RATCHETS, not exact expectations: resolution\n// may improve freely, and any regression has to be justified by editing this\n// file deliberately.\n\nimport { readFileSync } from \"node:fs\";\nimport path from \"node:path\";\n\nimport { describe, expect, it } from \"vitest\";\n\nimport { INTERACTION_LEXICON, selectCatalogueSlugs, type LexiconTerm } from \"@/lib/medication-interaction-lexicon\";\nimport { loadMedicationSnapshot } from \"@/lib/medication-snapshot\";\n\ntype IndexRow = {\n rowKey: string;\n rowIndex: number;\n severity: string;\n counterparties: string[];\n termIds: string[];\n resolved: boolean;\n};\n\nconst index = JSON.parse(\n readFileSync(path.resolve(process.cwd(), \"data/medication-interaction-index.json\"), \"utf8\"),\n) as {\n sourceRowCount: number;\n stats: { resolvedRows: number; unresolvedRows: number };\n bySlug: Record;\n};\n\nconst records = loadMedicationSnapshot();\n\nfunction term(id: string): LexiconTerm {\n const found = INTERACTION_LEXICON.find((item) => item.id === id);\n if (!found) throw new Error(`Lexicon term \"${id}\" not found`);\n return found;\n}\n\nfunction slugsFor(id: string): string[] {\n const found = term(id);\n return found.select ? selectCatalogueSlugs(found.select, records) : [];\n}\n\ndescribe(\"interaction lexicon coverage\", () => {\n it(\"does not regress the number of resolved rows\", () => {\n // Ratchet. Raise it when resolution genuinely improves; never lower it\n // without recording why in the PR.\n expect(index.stats.resolvedRows).toBeGreaterThanOrEqual(400);\n expect(index.sourceRowCount).toBeGreaterThanOrEqual(523);\n });\n\n it(\"keeps every unresolved row visible rather than dropping it\", () => {\n const rowTotal = Object.values(index.bySlug).reduce((total, entry) => total + entry.rows.length, 0);\n expect(index.stats.resolvedRows + index.stats.unresolvedRows).toBe(rowTotal);\n expect(rowTotal).toBe(index.sourceRowCount);\n });\n\n it(\"marks a row unresolved when its only counterparty is an unenumerable mechanism\", () => {\n const unresolved = Object.values(index.bySlug)\n .flatMap((entry) => entry.rows)\n .filter((row) => !row.resolved);\n expect(unresolved.length).toBeGreaterThan(0);\n });\n\n it(\"addresses a real catalogue row from every rowIndex it emits\", () => {\n // `note` is intentionally not duplicated into the index; the UI recovers the\n // verbatim text by indexing into the record. That only works if every\n // emitted rowIndex still addresses a real row, so pin it for all 523.\n for (const [slug, entry] of Object.entries(index.bySlug)) {\n const record = records.find((item) => item.slug === slug);\n const sourceRows = record?.sections.find((section) => section.type === \"inter\")?.rows ?? [];\n for (const row of entry.rows) {\n const source = sourceRows[row.rowIndex];\n expect(source, `${slug} row ${row.rowIndex} does not address a catalogue row`).toBeDefined();\n expect(source?.key).toBe(row.rowKey);\n expect((source?.val ?? \"\").trim().length).toBeGreaterThan(0);\n }\n }\n });\n});\n\ndescribe(\"lexicon deny-lists (the traps this module exists for)\", () => {\n it(\"never resolves clozapine or olanzapine as a benzodiazepine\", () => {\n // Their subclasses are \"SGA / Dibenzodiazepine\" and \"SGA / Thienobenzodiazepine\".\n const benzos = slugsFor(\"benzodiazepines\");\n expect(benzos).toContain(\"diazepam\");\n expect(benzos).not.toContain(\"clozapine\");\n expect(benzos).not.toContain(\"olanzapine-wafer-odt\");\n expect(benzos.every((slug) => !slug.startsWith(\"clozapine\"))).toBe(true);\n });\n\n it(\"never resolves an opioid antagonist as an opioid\", () => {\n const opioids = slugsFor(\"opioids\");\n expect(opioids).toContain(\"methadone\");\n expect(opioids).not.toContain(\"naltrexone\");\n expect(opioids).not.toContain(\"naloxone\");\n });\n\n it(\"resolves beta blockers across both catalogue spellings\", () => {\n const betaBlockers = slugsFor(\"beta-blockers\");\n // \"Beta Blocker\" (metoprolol) and \"Beta-Blocker\" (propranolol).\n expect(betaBlockers).toContain(\"metoprolol\");\n expect(betaBlockers).toContain(\"propranolol\");\n });\n\n it(\"prefers the specific class over the generic one\", () => {\n const thiazides = slugsFor(\"thiazide-diuretics\");\n const loops = slugsFor(\"loop-diuretics\");\n expect(thiazides.length).toBeGreaterThan(0);\n expect(loops.length).toBeGreaterThan(0);\n expect(thiazides.some((slug) => loops.includes(slug))).toBe(false);\n });\n});\n\ndescribe(\"non-drug and external terms\", () => {\n const nonMatching = INTERACTION_LEXICON.filter(\n (item) => item.kind === \"nonDrug\" || item.kind === \"external\" || item.kind === \"mechanism\",\n );\n\n it(\"never resolves to a catalogue medication\", () => {\n for (const item of nonMatching) {\n expect(item.select, `${item.id} must not carry a catalogue selector`).toBeUndefined();\n }\n });\n\n it(\"classifies alcohol, grapefruit and smoking as non-drug\", () => {\n for (const id of [\"alcohol\", \"grapefruit\", \"smoking\", \"acidic-drinks\"]) {\n expect(term(id).kind).toBe(\"nonDrug\");\n }\n });\n\n it(\"classifies bare CYP and P-gp classes as unenumerable mechanisms\", () => {\n for (const id of [\"cyp-inhibitors\", \"cyp-inducers\", \"pgp\", \"cns-depressants\"]) {\n expect(term(id).kind).toBe(\"mechanism\");\n }\n });\n\n it(\"produces no counterparties for a row whose only term is non-drug\", () => {\n // Clozapine's CRITICAL smoking row.\n const smokingRows = (index.bySlug.clozapine?.rows ?? []).filter((row) => row.termIds.includes(\"smoking\"));\n expect(smokingRows.length).toBeGreaterThan(0);\n expect(smokingRows.every((row) => row.counterparties.length === 0)).toBe(true);\n });\n\n it(\"resolves a non-drug-only row rather than leaving it for manual review\", () => {\n // \"Smoking\" is fully understood — it just is not a medicine. That is a\n // different thing from \"we could not read this row\", and must not push the\n // medication into the grey needs-review state.\n const smokingRows = (index.bySlug.clozapine?.rows ?? []).filter((row) => row.termIds.includes(\"smoking\"));\n expect(smokingRows.every((row) => row.resolved)).toBe(true);\n });\n});\n\ndescribe(\"lexicon hygiene\", () => {\n it(\"has unique term ids\", () => {\n const ids = INTERACTION_LEXICON.map((item) => item.id);\n expect(new Set(ids).size).toBe(ids.length);\n });\n\n it(\"has no duplicate surface across terms\", () => {\n const surfaces = INTERACTION_LEXICON.flatMap((item) => item.surfaces.map((s) => s.toLowerCase()));\n expect(new Set(surfaces).size).toBe(surfaces.length);\n });\n\n it(\"gives every catalogue term a selector that actually matches something\", () => {\n for (const item of INTERACTION_LEXICON.filter((entry) => entry.kind === \"catalogue\")) {\n expect(item.select, `${item.id} needs a selector`).toBeDefined();\n expect(slugsFor(item.id).length, `${item.id} resolved to nothing`).toBeGreaterThan(0);\n }\n });\n\n it(\"never lets a source medication appear as its own counterparty\", () => {\n for (const [slug, entry] of Object.entries(index.bySlug)) {\n for (const row of entry.rows) {\n expect(\n row.counterparties.every((c) => c !== slug),\n `${slug} self-interacts`,\n ).toBe(true);\n }\n }\n });\n});\nimport { fireEvent, render, screen } from \"@testing-library/react\";\nimport { afterEach, beforeEach, describe, expect, it } from \"vitest\";\n\nimport { PatientProfileProvider } from \"@/components/clinical-dashboard/patient-profile-context\";\nimport { PatientProfilePanel } from \"@/components/clinical-dashboard/patient-profile-panel\";\nimport { isProfileEmpty } from \"@/lib/medication-patient-alerts\";\nimport {\n PATIENT_PROFILE_MAX_MEDICATIONS,\n PATIENT_PROFILE_STORAGE_KEY,\n sanitizeMedicationSlugs,\n sanitizeProfile,\n} from \"@/lib/patient-profile-storage\";\n\nfunction renderPanel() {\n return render(\n \n \n ,\n );\n}\n\nfunction storedProfile(): Record {\n return JSON.parse(window.sessionStorage.getItem(PATIENT_PROFILE_STORAGE_KEY) ?? \"{}\");\n}\n\nbeforeEach(() => {\n window.sessionStorage.clear();\n});\n\nafterEach(() => {\n window.sessionStorage.clear();\n});\n\ndescribe(\"current-medications picker\", () => {\n it(\"adds a catalogue medication and persists its slug\", () => {\n renderPanel();\n\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n\n expect(storedProfile().medications).toEqual([\"sertraline\"]);\n expect(screen.getByTestId(\"patient-medication-sertraline\")).toBeInTheDocument();\n });\n\n it(\"clears the search box after adding, so the next drug starts fresh\", () => {\n renderPanel();\n const search = screen.getByTestId(\"patient-medication-search\") as HTMLInputElement;\n\n fireEvent.change(search, { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n\n expect(search.value).toBe(\"\");\n });\n\n it(\"removes a medication when its chip is activated again\", () => {\n renderPanel();\n\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n fireEvent.click(screen.getByTestId(\"patient-medication-sertraline\"));\n\n expect(storedProfile().medications).toEqual([]);\n expect(screen.queryByTestId(\"patient-medication-sertraline\")).not.toBeInTheDocument();\n });\n\n it(\"gives the remove control a name that survives without the icon\", () => {\n renderPanel();\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n\n expect(screen.getByTestId(\"patient-medication-sertraline\")).toHaveAttribute(\"aria-label\", \"Remove Sertraline\");\n });\n\n it(\"offers nothing for a drug outside the catalogue, and says why\", () => {\n renderPanel();\n\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"warfarinx\" } });\n\n expect(screen.getByText(/Only medications in this catalogue can be interaction-checked/i)).toBeInTheDocument();\n });\n\n it(\"drops the medication list and the search term on Clear\", () => {\n renderPanel();\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n\n fireEvent.click(screen.getByRole(\"button\", { name: /clear/i }));\n\n expect(storedProfile().medications).toEqual([]);\n expect((screen.getByTestId(\"patient-medication-search\") as HTMLInputElement).value).toBe(\"\");\n });\n});\n\ndescribe(\"medication-list sanitisation\", () => {\n it(\"keeps well-formed slugs, de-duplicated and sorted\", () => {\n expect(sanitizeMedicationSlugs([\"sertraline\", \"aspirin\", \"sertraline\"])).toEqual([\"aspirin\", \"sertraline\"]);\n });\n\n it(\"rejects non-strings and malformed slugs rather than storing them\", () => {\n expect(sanitizeMedicationSlugs([1, null, {}, \"Not A Slug\", \"-leading\", \"has_underscore\", \"\"])).toEqual([]);\n });\n\n it(\"normalises case rather than dropping an otherwise valid slug\", () => {\n expect(sanitizeMedicationSlugs([\" Sertraline \"])).toEqual([\"sertraline\"]);\n });\n\n it(\"caps a corrupted list instead of evaluating it unbounded\", () => {\n const many = Array.from({ length: 200 }, (_, index) => `drug-${index}`);\n expect(sanitizeMedicationSlugs(many).length).toBeLessThanOrEqual(PATIENT_PROFILE_MAX_MEDICATIONS);\n });\n\n it(\"returns an empty list for a non-array value\", () => {\n expect(sanitizeMedicationSlugs(\"sertraline\")).toEqual([]);\n expect(sanitizeProfile({ medications: \"sertraline\" }).medications).toEqual([]);\n });\n});\n\ndescribe(\"isProfileEmpty\", () => {\n it(\"treats a medication list as a populated profile\", () => {\n expect(isProfileEmpty({ medications: [] })).toBe(true);\n expect(isProfileEmpty({ medications: [\"sertraline\"] })).toBe(false);\n });\n});\nimport { fireEvent, render, screen } from \"@testing-library/react\";\nimport { afterEach, beforeEach, describe, expect, it, vi } from \"vitest\";\n\nimport { PatientDetailsDockAction } from \"@/components/clinical-dashboard/patient-details-dock-action\";\nimport { PatientProfileProvider } from \"@/components/clinical-dashboard/patient-profile-context\";\nimport { patientDetailsAddonSlotId } from \"@/lib/mode-home-composer\";\nimport { PATIENT_PROFILE_STORAGE_KEY } from \"@/lib/patient-profile-storage\";\n\n/** Stand in for the phone dock's addon slot, which MasterSearchHeader renders. */\nfunction mountSlot(): HTMLElement {\n const slot = document.createElement(\"div\");\n slot.id = patientDetailsAddonSlotId;\n document.body.append(slot);\n return slot;\n}\n\nfunction setPhoneViewport(isPhone: boolean) {\n vi.stubGlobal(\n \"matchMedia\",\n vi.fn().mockImplementation((query: string) => ({\n matches: isPhone,\n media: query,\n onchange: null,\n addEventListener: vi.fn(),\n removeEventListener: vi.fn(),\n addListener: vi.fn(),\n removeListener: vi.fn(),\n dispatchEvent: vi.fn(),\n })),\n );\n}\n\nfunction renderAction() {\n return render(\n \n \n ,\n );\n}\n\nbeforeEach(() => {\n window.sessionStorage.clear();\n setPhoneViewport(true);\n});\n\nafterEach(() => {\n window.sessionStorage.clear();\n document.getElementById(patientDetailsAddonSlotId)?.remove();\n vi.unstubAllGlobals();\n});\n\ndescribe(\"PatientDetailsDockAction\", () => {\n it(\"portals into the dock's addon slot rather than positioning itself\", () => {\n const slot = mountSlot();\n renderAction();\n\n const action = screen.getByTestId(\"patient-details-dock-action\");\n expect(slot.contains(action)).toBe(true);\n });\n\n it(\"renders nothing when the dock exposes no slot\", () => {\n renderAction();\n expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n });\n\n it(\"renders nothing above the phone breakpoint, where the panel is already inline\", () => {\n setPhoneViewport(false);\n mountSlot();\n renderAction();\n\n expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n });\n\n it(\"is a real button that opens the patient sheet\", () => {\n mountSlot();\n renderAction();\n\n const action = screen.getByTestId(\"patient-details-dock-action\");\n expect(action).toHaveAttribute(\"type\", \"button\");\n expect(action).toHaveAttribute(\"aria-haspopup\", \"dialog\");\n expect(action).toHaveAttribute(\"aria-expanded\", \"false\");\n\n fireEvent.click(action);\n\n expect(screen.getByRole(\"dialog\", { name: \"Patient details\" })).toBeInTheDocument();\n expect(screen.getByTestId(\"patient-details-dock-action\")).toHaveAttribute(\"aria-expanded\", \"true\");\n });\n\n it(\"announces an empty profile without relying on the count badge\", () => {\n mountSlot();\n renderAction();\n\n expect(screen.getByText(\"No patient details entered\")).toBeInTheDocument();\n });\n\n it(\"counts every entered dimension, not just medications\", () => {\n window.sessionStorage.setItem(\n PATIENT_PROFILE_STORAGE_KEY,\n JSON.stringify({ ageYears: 70, medications: [\"sertraline\", \"aspirin\"], allergies: [\"penicillin\"] }),\n );\n mountSlot();\n renderAction();\n\n // age + 2 medications + 1 allergy\n expect(screen.getByText(\"4 details entered\")).toBeInTheDocument();\n });\n\n it(\"takes the accent treatment once a profile is loaded\", () => {\n window.sessionStorage.setItem(PATIENT_PROFILE_STORAGE_KEY, JSON.stringify({ medications: [\"sertraline\"] }));\n mountSlot();\n renderAction();\n\n expect(screen.getByTestId(\"patient-details-dock-action\").className).toContain(\n \"patient-details-fab__button--active\",\n );\n });\n\n it(\"stays visually quiet while the profile is empty\", () => {\n mountSlot();\n renderAction();\n\n expect(screen.getByTestId(\"patient-details-dock-action\").className).not.toContain(\n \"patient-details-fab__button--active\",\n );\n });\n});\n\n-- Next client docs candidates --\nnode_modules/next/dist/docs/02-pages/04-api-reference/04-config/01-next-config-js/reactStrictMode.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/01-components/form.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/01-components/head.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/01-components/image.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/01-components/index.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/01-components/image-legacy.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/01-components/link.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/01-components/script.md\nnode_modules/next/dist/docs/02-pages/04-api-reference/01-components/font.md\nnode_modules/next/dist/docs/02-pages/03-building-your-application/03-data-fetching/05-client-side.md\nnode_modules/next/dist/docs/02-pages/03-building-your-application/02-rendering/05-client-side-rendering.md\nnode_modules/next/dist/docs/02-pages/02-guides/migrating/from-create-react-app.md\nnode_modules/next/dist/docs/01-app/01-getting-started/05-server-and-client-components.md\nnode_modules/next/dist/docs/01-app/03-api-reference/02-components/form.md\nnode_modules/next/dist/docs/01-app/03-api-reference/02-components/image.md\nnode_modules/next/dist/docs/01-app/03-api-reference/02-components/index.md\nnode_modules/next/dist/docs/01-app/03-api-reference/02-components/link.md\nnode_modules/next/dist/docs/01-app/03-api-reference/02-components/script.md\nnode_modules/next/dist/docs/01-app/03-api-reference/02-components/font.md\nnode_modules/next/dist/docs/01-app/03-api-reference/01-directives/use-client.md\nnode_modules/next/dist/docs/01-app/03-api-reference/03-file-conventions/mdx-components.md\nnode_modules/next/dist/docs/01-app/03-api-reference/03-file-conventions/instrumentation-client.md\nnode_modules/next/dist/docs/01-app/03-api-reference/05-config/01-next-config-js/reactMaxHeadersLength.md\nnode_modules/next/dist/docs/01-app/03-api-reference/05-config/01-next-config-js/reactCompiler.md\nnode_modules/next/dist/docs/01-app/03-api-reference/05-config/01-next-config-js/reactStrictMode.md\nnode_modules/next/dist/docs/01-app/02-guides/migrating/from-create-react-app.md\nnode_modules/next/dist/docs/01-app/02-guides/incremental-static-regeneration-cache-components.md\nnode_modules/next/dist/docs/01-app/02-guides/caching-without-cache-components.md\nnode_modules/next/dist/docs/01-app/02-guides/migrating-to-cache-components.md\n","/bin/bash -lc \"npm run ledger:lookup -- HEAD --scope \\\"resolve current PR inline review comments\\\"; printf '\\\\n-- remotes/branches --\\\\n'; git remote -v; git branch -vv; printf '\\\\n-- relevant sources --\\\\n'; sed -n '1,360p' scripts/build-medication-interaction-index.ts; sed -n '1,280p' src/lib/medication-interactions.ts; sed -n '90,180p' src/components/clinical-dashboard/patient-profile-panel.tsx; sed -n '1,180p' src/components/clinical-dashboard/patient-details-dock-action.tsx; printf '\\\\n-- tests --\\\\n'; sed -n '1,340p' tests/medication-interactions.test.ts; sed -n '1,260p' tests/medication-interaction-lexicon-coverage.test.ts; sed -n '1,260p' tests/patient-profile-medications.dom.test.tsx; sed -n '1,240p' tests/patient-details-dock-action.dom.test.tsx; printf '\\\\n-- Next client docs candidates --\\\\n'; find node_modules/next/dist/docs -type f | rg 'client|react|effect|component' | head -30\"",[4005],10439,"exec-8b0374b9-e8da-44d5-80ca-f431fc18edc2","72464",{"_925":4006,"_96":941},"npm run ledger:lookup -- HEAD --scope \"resolve current PR inline review comments\"; printf '\\n-- remotes/branches --\\n'; git remote -v; git branch -vv; printf '\\n-- relevant sources --\\n'; sed -n '1,360p' scripts/build-medication-interaction-index.ts; sed -n '1,280p' src/lib/medication-interactions.ts; sed -n '90,180p' src/components/clinical-dashboard/patient-profile-panel.tsx; sed -n '1,180p' src/components/clinical-dashboard/patient-details-dock-action.tsx; printf '\\n-- tests --\\n'; sed -n '1,340p' tests/medication-interactions.test.ts; sed -n '1,260p' tests/medication-interaction-lexicon-coverage.test.ts; sed -n '1,260p' tests/patient-profile-medications.dom.test.tsx; sed -n '1,240p' tests/patient-details-dock-action.dom.test.tsx; printf '\\n-- Next client docs candidates --\\n'; find node_modules/next/dist/docs -type f | rg 'client|react|effect|component' | head -30",{"_881":4008,"_860":861,"_883":867},{"_944":4009,"_45":-5,"_888":4010,"_204":-5,"_947":4011,"_96":949},"call_SY4hMOVclUylvMeS8ollJLfF",{"_893":867},"Script running with cell ID 2\nWall time 10.0 seconds\nOutput:\n",{"_881":4013,"_860":861,"_883":867},{"_944":4009,"_45":4014,"_972":4015,"_888":4016,"_204":975,"_976":-5,"_874":117,"_96":977},"ctc_025cd3e962896641016a7ccf94f4f48190bef23139e00f0164","const r = await tools.exec_command({cmd:\"npm run ledger:lookup -- HEAD --scope \\\"resolve current PR inline review comments\\\"; printf '\\\\n-- remotes/branches --\\\\n'; git remote -v; git branch -vv; printf '\\\\n-- relevant sources --\\\\n'; sed -n '1,360p' scripts/build-medication-interaction-index.ts; sed -n '1,280p' src/lib/medication-interactions.ts; sed -n '90,180p' src/components/clinical-dashboard/patient-profile-panel.tsx; sed -n '1,180p' src/components/clinical-dashboard/patient-details-dock-action.tsx; printf '\\\\n-- tests --\\\\n'; sed -n '1,340p' tests/medication-interactions.test.ts; sed -n '1,260p' tests/medication-interaction-lexicon-coverage.test.ts; sed -n '1,260p' tests/patient-profile-medications.dom.test.tsx; sed -n '1,240p' tests/patient-details-dock-action.dom.test.tsx; printf '\\\\n-- Next client docs candidates --\\\\n'; find node_modules/next/dist/docs -type f | rg 'client|react|effect|component' | head -30\",\"workdir\":\"/workspace/Database\",\"yield_time_ms\":10000,\"max_output_tokens\":40000});\ntext(r.output);\n",{"_893":867},{"_881":4018,"_860":861,"_883":867},{"_884":-5,"_905":4019,"_45":4020,"_888":4021,"_909":4022,"_96":911},"gAAAAABqfM-UG3H37lLmTGtcXw4SV9KMoKyXStP1-c5fsyeYvDiMBp8Uxfa0ul3_XSVFpuSv1S8wQhKWC7G85i0psZy0p3NiLVpbYYa4CDcBoI72g31U_T_6ZEkEEp9h1spIgV8ILqgyPCZO8zWKfes8pWLOfW_977SF4_2t561tGRwAYww6Fn2XPdv1HhU0RA8GR_49MdCoPTT7wDeQd_VD2Zc6aoQhdXDePtlPeuwaImOlNKV77arLKu3TLPaafyDabrqoPhkdR_c7svYYJHn31KgstpPUgQgCqG588bkHfT6IRlQ5lBET5AShL78B5Mlg_1As2Sr5n6NItI9hIW83G-c6fifrzyEHhsePCliWdGyNnbKLjFOHZZmrJGkvDux2c_8HLbUv5PB70Y9H695eidZ0-Bd4-GgCLwV1bZtOZ9lLrKfC1FjnwEmCma7m3FKyb3ss9LbtNb0fFW_IwYlRK-8x3rCaWt8J57QSrFiuRJkTmhNpHw8KCBOe6uoxSehQN2ga52NEaE77qg1aoq-0ZjV6QJd0I-k5z2E99fTmHoIo4hFB_M45yMwT_wk4ZLmx0JsIcF-e-ZO9W3X18RmOOdA2wZpgF9E9K60xBm6-cqqdapt_-yVqXOcRn-3aJRYOtYzvRy2uEa4IY0BJ_q3fr_7FtYida28L4l3wdA7nfXt9ei-TeJVjqUZmb_p5NacPdCulKzWqjlb06LGHFA2aW0_WhSuLlp05dEEepETME9YY5XI1uFxE7fN5xHH_yqMkUHfHNAudRwlzqAcE0X_9wHgPqGNnmJYGojTOp4VflKxyBTpcoHlHSDNO8rVRgYbKaSHZADAeTZL81yWli4mC3j3Q17VHD7Jzwd3CqEXOhRU13qN957fhPha-F9V28a7n48H0AihrJuDft6BNF5vKiSjMeo08VG3qfqNrRAAhntTdHk3ikrG6iQNeO9GmQYjv0A9OLekLylQjBs-QauLecnC9jHu6qTBAI4of3m6awCEoZ5ekCT4gIhIq1WFoYWdhnRWTTa1grr7761zU7QFYTpPOsmBFejfHHPomWIx2HgBoUQorGocoJRWTeSiywK_be9tDHu9fZOn90mE_RZvlNl_a8naUKkeHt-mPY_UBsfPUelDiiyGWnNYcP1bg20awo3JBiWhfb5GM9p4CeWDKHkgkeTAxMg==","rs_025cd3e962896641016a7ccf939ebc8190b7693e7bc28bab0c",{"_893":867},[4023],{"_49":4024,"_96":914},"**Inspecting files and git branches**",{"_899":4026,"_881":4027,"_860":861,"_883":867},1786564500940,{"_884":4028,"_45":4020,"_909":4029,"_96":911},[],[4024],{"_881":4031,"_860":861,"_883":867},{"_944":4032,"_45":-5,"_888":4033,"_204":-5,"_947":4034,"_96":949},"call_F1yGjFUS8kTEUSSCKD33qK9L",{"_893":867},{"_355":4035,"_951":-5},[4036,4037],{"_49":3091,"_96":955},{"_49":4038,"_96":955},"Warning: truncated output (original token count: 25084)\nTotal output lines: 1174\n\n/workspace/Database\n\n-- status --\n## work\n\n-- head --\n76a22e4a1106a205fe9c3055541c3404bf1021a2\n\n-- agent files --\n../Database/AGENTS.md\n../Database/node_modules/next/AGENTS.md\n../Database/node_modules/@supabase/realtime-js/AGENTS.md\n../Database/node_modules/@supabase/supabase-js/AGENTS.md\n../Database/node_modules/@supabase/storage-js/AGENTS.md\n../Database/node_modules/@supabase/auth-js/AGENTS.md\n../Database/node_modules/@supabase/functions-js/AGENTS.md\n../Database/node_modules/@supabase/postgrest-js/AGENTS.md\n\n-- root instructions --\n\n\n# This is NOT the Next.js you know\n\nThis version has breaking changes — APIs, conventions, and file structure may all differ from your training data. Read the relevant guide in `node_modules/next/dist/docs/` (resolved from this file's directory; in monorepos the `next` package may not be visible from the repo root) before writing any code. Heed deprecation notices.\n\nThis block is written and re-added by `next dev` — verify at `node_modules/next/dist/server/lib/generate-agent-files.js`. Removing it from a diff only re-creates the uncommitted change; committing it with your work keeps the tree clean.\n\n\n\n\n\n## Dependency shortcut\n\nWhen the user types exactly `dependency` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for safe dependency maintenance. This is a Codex chat shortcut, not an app feature, script, automation, or CI workflow.\n\nGoal:\nUpdate direct project dependencies to the newest stable compatible versions, regenerate the existing lockfile, identify source/config/test code that relies on old dependency behavior, make the smallest safe compatibility changes, and verify the result. Do not rewrite the project, switch package managers, discard user work, commit, push, deploy, or run destructive cleanup without explicit confirmation.\n\nStart with read-only inspection:\n\n- Check branch, upstream, worktrees, recent relevant history, and `git status`.\n- If on `main`, `master`, `develop`, `release/*`, or another protected/base branch, create/switch to `codex/dependency-maintenance` before editing, if safe.\n- Inspect manifests, lockfiles, package-manager config, runtime/toolchain files, workspace layout, CI config, scripts, and documented checks.\n- Detect repo-local install/dev/test/build/watch/server processes that could race dependency updates.\n- Preserve all existing staged, unstaged, and untracked user work.\n\nPackage-manager rules:\n\n- Use the package manager already used by the repo: npm, pnpm, yarn, bun, pip, poetry, uv, cargo, go, bundler, gradle, maven, dotnet, or equivalent.\n- Do not switch package managers or create a new lockfile type.\n- Respect engines, runtime versions, lockfiles, workspaces, wrappers, and repo conventions.\n- In monorepos or polyglot repos, update each ecosystem through its native workspace-aware workflow.\n\nDependency update rules:\n\n- Identify outdated direct production and development dependencies.\n- Compare both manifest ranges and locked/installed versions against latest stable compatible releases.\n- Treat “outdated packages found” exit codes as normal where applicable.\n- Avoid prerelease, alpha, beta, canary, rc, next, nightly, and experimental versions unless the stable channel points there and explain why.\n- Do not use force or legacy flags that bypass peer, engine, resolver, or lockfile integrity checks unless explicitly approved.\n- Do not run forced audit fixes or broad destructive codemods.\n- If latest is incompatible, use the newest compatible version and document why.\n- Group risky updates coherently, such as framework plus plugins, test runner plus coverage, lint core plus plugins, or runtime plus adapter packages.\n\nCompatibility audit:\n\n- For every major update and every core framework/runtime/build/test/lint/UI/database update, inspect release notes, migration guides, peer ranges, engines, and changelogs when available.\n- Search source, tests, scripts, config, and CI for imports, APIs, CLI flags, config keys, environment variables, plugin names, generated types, or file paths tied to changed dependencies.\n- If old dependency behavior is used, make the smallest safe migration that preserves behavior.\n- If migration is large, risky, architectural, or product-affecting, stop after discovery and provide a concrete fix plan with affected files, package versions, sequence, and verification commands.\n- Add or adjust focused tests only when needed to prove migrated behavior.\n\nGenerated and sensitive files:\n\n- Do not intentionally keep dependency directories, build outputs, caches, logs, local state, test artifacts, browser artifacts, `.env*`, secrets, keys, tokens, credentials, or machine-local config.\n- Manifest and existing lockfile changes are allowed.\n\nVerification:\n\n- Run a cheap baseline first when useful to distinguish pre-existing failures.\n- After updates, run install/dependency validation, then relevant lint, type check, tests, build, smoke/UI/a11y, codegen, integration checks, or equivalent.\n- For frontend/browser-facing changes, run browser/UI verification when framework, bundler, router, styling, test runner, or browser automation changed.\n- If a check fails, fix dependency-related breakage and rerun the smallest failing check before broader checks.\n- Run non-mutating audit/vulnerability checks when available.\n- Confirm no repo-owned dev server, watcher, or temporary process was left running unless requested.\n\nFinal response for `dependency` must include:\n\n- Branch and worktree state.\n- Package manager, runtime, manifests, and lockfiles detected.\n- Outdated dependencies found.\n- Dependencies updated, old version -> new version.\n- Dependencies not updated and why.\n- Files changed.\n- Compatibility migrations and old APIs found/fixed.\n- Checks run and results.\n- Checks not run and why.\n- Audit/vulnerability summary.\n- Generated/untracked files left behind.\n- Branch movement, external repo changes, or process cleanup observed.\n- Risks or follow-up work.\n- Confirmation that no commit or push was made unless explicitly requested.\n\nAfter setup:\n\n- Verify root `AGENTS.md` contains exactly one `## Dependency shortcut` section.\n- Show the final diff for `AGENTS.md`.\n- Summarize what changed.\n- Confirm no dependency update, install, test, build, audit, commit, or push was performed.\n\n\n\n\n\n## Bug-hunter shortcut\n\nWhen the user types exactly `bug-hunter` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for targeted defect discovery.\n\nExecution rules:\n\n- Invoke the `bug-hunter` skill first.\n- Prioritize reproducible defects over code style, naming, or formatting feedback.\n- Trace realistic failure paths: invalid input, empty states, retries, race/concurrency issues, stale state/cache, network/auth failures, permissions, and boundary values.\n- For each finding, include trigger, expected behavior, actual risk, and the smallest proof (or targeted test/check) that would catch it.\n- If no high-confidence defect is found, explicitly state that and list the most likely residual risk area.\n\nScope and safety:\n\n- Keep the hunt scoped to code touched by the user request unless the defect clearly crosses module boundaries.\n- Do not make broad refactors while hunting; propose minimal fixes for confirmed issues.\n- Run the smallest focused verification for each confirmed defect, then expand only if needed.\n\n\n\n\n\n## Codex review throttling and routing\n\nDo not review branches opportunistically. Review the current changed diff, PR, or branch only when the user explicitly asks for review/audit/hunter/cleanup/upload work, when CI/check failures are the task, or when the current change touches high-risk areas that require a targeted review before handoff.\n\nUse `docs/codex-review-protocol.md` as the shared review protocol for every repo-local review skill, branch/PR review, audit, bug hunt, release-readiness check, and PR/CI review.\n\nBefore reviewing a branch or PR:\n\n- Run `npm run ledger:lookup -- --scope \"\"`. It resolves the HEAD, matches the abbreviated SHAs older records used, and prints an explicit verdict. Do not read `docs/branch-review-ledger.md` by eye — live + archive rows are many, and eyeballing is how repeat reviews slipped through. `ledger:lookup` reads archives under `docs/archive/branch-review-ledger-*.md` too.\n- On `ALREADY REVIEWED`, summarize the prior ledger outcome and skip the repeat review unless the user explicitly requests a fresh pass.\n- On `NOT REVIEWED at this HEAD`, review only the changed scope and append a record after the review.\n\nBefore reviewing multiple branches:\n\n- Build a short branch inventory first: branch, upstream, ahead/behind, last commit, and merged status.\n- Skip branches already merged into `main`.\n- Skip unchanged branches already recorded in `docs/branch-review-ledger.md`.\n- Do not re-review every branch after ordinary coding tasks.\n- If a repeated request targets unchanged reviewed branches, summarize the prior result and ask before doing another full pass.\n\nReview routing:\n\n- `diff-review`: Use for explicit review of the current diff, PR, or named branch. Findings first, ordered by severity, with file/line evidence.\n- `bug-hunter`: Use only for the exact `bug-hunter` shortcut or an explicit defect-hunt request. Prioritize reproducible bugs and smallest proof.\n- `repo-auditor`: Use for explicit repo-wide audit/refactor/dead-code/import/dependency-structure requests. Treat outputs as triage, not automatic delete lists.\n- `release-readiness`: Use for explicit release, merge, PR readiness, or handoff confidence requests. Do not run provider-backed gates without confirmation.\n- `branch-cleanup`: Use only when the prompt explicitly asks for branch cleanup/hygiene or branch deletion candidates. Apply `docs/branch-cleanup-guide.md` and the review ledger before inspecting branch diffs.\n- `pr-ci-fix`: Confirmation-required for this repo. GitHub/GitLab API calls, PR comments, CI reruns, commits, and pushes require explicit user approval and must respect the upload/handoff rules. Exception: an explicit `Run PR` sweep carries this approval (see \"## Run PR shortcut\").\n\nWhen a branch or PR review completes, record it with `npm run ledger:append -- --ref --head --scope --outcome --checks `. Never hand-write the markdown row: hand-written rows produced the mojibake, wrong-width, and duplicate records that the 2026-07-28 hygiene pass had to repair, and `see PR head` or abbreviated HEADs make a record unmatchable so the review runs again. The ledger is append-only: never edit or delete an existing record; append a correction or superseding record (`--supersede`) instead. Its `merge=ledger` driver preserves concurrent appends and drops exact duplicate rows; after a main sync without that driver installed, run `npm run ledger:dedupe`. `npm run check:branch-review-ledger` blocks conflict markers, duplicate records, mojibake, wrong-width or heading-style records, unresolvable HEADs, or loss of that merge protection.\n\nBabysit / Run PR ledger policy: do not push a tip whose sole delta is a babysit ledger append (that marks every other open PR behind). One Run PR row per PR per sweep; on a later sweep of the same PR, pass `--supersede` rather than stacking another \"main sync\" row. After `git merge origin/main`, run `npm run ledger:dedupe` before committing when the ledger changed.\n\n\n\n\n\n# Local server safety\n\n- If the user says `run`, execute `npm run ensure` and return the printed URL.\n- If the user asks for UI/frontend changes, browser QA, screenshots, mobile checks, or a local app link, run `npm run ensure` before opening or testing the app, even if the user did not say `run`.\n- Never assume `localhost:3000`, `localhost:3001`, or `localhost:3002`.\n- Never attach to a local server unless `/api/local-project-id` confirms it is this project.\n- Do not kill or modify other projects' local servers. If the stable project port is busy, let `npm run ensure` choose the next safe project URL.\n- Do not run a permanent watcher. Only start or verify the server when the current chat task needs the app or the user asks to run it.\n\n\n\n\n\n# Codex Desktop worktree setup\n\n- The Windows Codex Desktop environment setup command is `node scripts/setup-codex-worktree.mjs`.\n It must work before `node_modules` exists, validate Node 24/npm 11, reuse only a complete\n byte-identical local installation, and otherwise run the locked npm install.\n- Never configure Windows Desktop worktrees to run `bash scripts/setup-codex-cloud.sh`. That script\n is Linux/Cloud-only; Windows launches it through WSL outside the worktree and cannot provision the\n repository.\n- `.codex/environments/environment.toml` is autogenerated and ignored. Change the Database\n environment through Codex settings, then verify the effective command with the generated file and\n `node scripts/setup-codex-worktree.mjs --dry-run`.\n\n\n\n\n\n# Reasoning effort calibration\n\nReasoning effort is a budget in the same way verification is a budget, and it is misspent the same\nway — by defaulting to the maximum instead of matching the spend to the risk. **Scale effort to how\nexpensive the mistake is to undo (irreversibility × branching factor), never to the phase label.**\n\"Plan high, build lower\" is a good default, not a rule; it is wrong often enough that it must be\nchosen deliberately rather than assumed.\n\n**Why it is a good default.** Planning errors compound and implementation errors stay local: a wrong\napproach throws away the build, a wrong identifier is one edit. A plan is also a few thousand output\ntokens against a build's many long turns, so effort is cheapest exactly where it has the most leverage.\n\n**The mechanism that makes it work — do not skip this part.** A lower-effort build only succeeds\nagainst a plan concrete enough to execute: named files, named symbols, ordered steps, and the gate\nthat will prove it. Downgrading the build against a vague plan does not save effort, it relocates the\nthinking into the expensive phase. If the plan cannot name those things, the build is not eligible for\nthe downgrade.\n\n| Situation | Plan | Build |\n| ---------------------------------------------------------------------------------------------- | ----------- | ----------- |\n| Architecture, Supabase migrations/RLS, RAG ranking surfaces, auth/privacy, ingestion contracts | xhigh | high |\n| Ordinary feature or UI work with a clear shape | high | medium–high |\n| Mechanical and fully specified — ledger append, docs edit, rename (not dependency maintenance) | low or skip | medium |\n| Debugging an unknown failure | low | high |\n\n**Where the default inverts and the build needs more than the plan.** These are plan-light and\nexecution-heavy; treating them as plan-heavy spends the budget in the wrong place:\n\n- **Debugging.** The plan is \"find why X fails.\" The real reasoning is hypothesis-forming over local\n runtime, logs, and repro state during the build — hosted providers still need explicit confirmation.\n- **Constraint-dense implementation.** A one-sentence plan whose edit must simultaneously satisfy\n button wiring, design tokens, the one-composer rule, unlayered CSS, and the tap-target and\n phone-chrome contracts. Holding all of it at once is the hard part, not deciding what to do.\n- **Areas where training data is stale.** Next 16 is the standing case. Effort does not repair a wrong\n prior — reading `node_modules/next/dist/docs/` does. Raising effort instead of reading is itself the\n failure mode.\n\n**Constrain xhigh planning output, not just its effort.** Extra-high planning over-produces:\nalternatives, contingency branches, and surveys that are never used, paid for twice — once generating\nand once reading. Ask for the chosen approach, the files, and the gate, not a survey.\n\n**State the split before non-trivial planning work.** One line before starting: plan effort, build\neffort, and the risk that justifies them. It is cheap, it makes a wrong allocation visible while it is\nstill free to change, and it stops the blanket default from being applied silently.\n\n\n\n\n\n# Process hardening phases\n\n- **Verification principle:** run the smallest check capable of detecting a plausible regression introduced by the current diff. Before starting a check, identify the failure class it covers, whether a successful check already covered that class, whether a cheaper focused check offers comparable detection, and whether the incremental confidence justifies the runtime, resource use, and repository-lock contention. If there is no plausible changed failure path, do not run the check.\n\n| Tier | Use when | Default evidence |\n| ----------------------- | ----------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------- |\n| 0 — No test command | Explanation, planning, prompt writing, read-only inspection, or no repository change | No test, build, server, or baseline command |\n| 1 — Static/focused | Documentation, comments, metadata, or narrow non-behavioural configuration | Relevant format, docs, syntax, generated-file, or diff check only |\n| 2 — Focused behavioural | A localized helper, component, contract, or test change | Directly affected unit/DOM/contract test; add typecheck only when the edit can affect compilation or a type contract |\n| 3 — Domain gate | Shared UI/routing, dependencies, security, privacy, RAG, clinical output, production configuration, or another cross-cutting domain | The smallest applicable repository/domain selector, focused journey, or contract gate |\n| 4 — Broad handoff | The diff crosses multiple subsystems, cannot be bounded reliably, or the task explicitly requires PR/release confidence | One appropriate broad gate, selected rather than stacked by default |\n\n- Do not run a broad baseline routinely before localized work, and do not select `verify:cheap` merely because a change is described as “non-trivial.” Use `npm run verify:cheap` once when cross-module risk warrants a broad offline gate. Use `npm run verify:pr-local` when a change is ready for PR handoff: it now classifies the changed paths, runs focused documentation/workflow contracts for recognised low-risk scopes, and fails closed to lint, typecheck, the full unit suite, RAG fixture validation, and relevant build/domain gates for executable or unknown scope. If the diff has not changed, do not r…15084 tokens truncated…ses the repository's risk/complexity router.\n\n- The auto-resolve request must fire only from a Codex-authored `pull_request_review` **submitted** event on an open pull request — never from the first inline comment mid-review. This guarantees the request is posted only after a code review completes; without a review there are no findings and the request is pointless.\n- The request job must skip reviews with no actionable findings: skip `approved`/`dismissed` reviews, and skip when the submitted review carries zero inline comments.\n- Route automatic repair only when at least one changed path is high-risk, when the pull request changes at least 10 non-test source files or 300 non-test source lines, or when the `codex-review` label explicitly opts in. Treat `skip-codex-review` as an unconditional opt-out that wins if both labels are present.\n- High-risk paths include migrations/RLS, application API routes, auth/permissions/privacy/security, clinical/RAG/retrieval/search/source/document behavior, provider or production configuration, dependencies, and CI/release workflows. Do not route docs-only, test-only, generated-only, or small low-risk UI/copy changes unless explicitly opted in.\n- Read changed-file metadata through the GitHub API only; never check out or execute pull-request code in the routing job. Record the selected route in a hidden `codex-autoresolve-route` marker for auditability.\n- Match the trusted Codex connector bot by exact login and bot type; do not use substring login checks.\n- Keep per-pull-request concurrency on the authorized job, not the whole workflow, so unrelated events cannot displace a pending Codex request.\n- Pin the supported Node 24-based `actions/github-script` release to its reviewed immutable commit SHA.\n- Post the `@codex` resolve request with a real (non-bot) user identity — a fine-grained PAT held in the `CODEX_TRIGGER_TOKEN` secret. The Codex connector ignores commands authored by `github-actions[bot]`, so a bot-authored request is silently dropped. The token needs `pull-requests: write` (issue-comment) access and no more.\n- The workflow must treat unmarked review-thread replies as inert. A trusted Codex reply beginning with `` may only resolve the exact containing thread, and a non-reply Codex review comment must never be turned into a new repair request.\n- The workflow must ask Codex to resolve only existing actionable Codex review findings for the triggering pull request and current head using these repository instructions; the resolve task must not perform a new review or create new findings. It must name the exact repository and PR head branch, require fixes to be published there through the authenticated GitHub connector, forbid detached `work` branches and stacked pull requests, and treat a local-only commit as a visible failure.\n- The workflow may request one automatic repair pass per pull request lifetime. Later heads require an explicit human request.\n- Only trust a pull-request deduplication marker when it was posted by the trigger-token account (the same identity that posts the request), resolved at runtime rather than hard-coded.\n- Permission failures while reading or creating pull-request comments must fail the workflow visibly, not return a successful soft-skip.\n- Grant `pull-requests: write` only to the narrow marker-driven thread-resolution job; the request job runs with read-only repository contents and relies on the trigger token's own scope, and neither job approves reviews or alters code.\n- The workflow must not run Codex directly with API credentials.\n- P0 and P1 findings should always be fixed.\n- P2 and lower findings should be fixed only when clear, scoped, low-risk, and testable; otherwise explain the decision and resolve or mark ready for human resolution.\n\n### Primary PR command\n\n`@codex resolve actionable Codex review findings for this pull request and current head using the repository instructions. This is the pull request's single automatic repair pass: do not perform a fresh review, create new standalone findings, or request another review. Work only the existing unresolved Codex threads on the current head. The workflow will provide the only allowed repository, pull-request head branch, and starting commit. Publish every approved fix to that exact head branch through the authenticated GitHub connector; never use a detached or synthetic work branch and never create a stacked pull request. Verify the pull-request head contains the pushed commit before reporting success. Always fix P0 and P1 findings. For P2 and lower findings, fix only clear, scoped, low-risk issues; otherwise disposition them with a concise reason. For a fixed thread, reply with followed by . For a no-code disposition, use followed by . A local-only commit is not a fix. If publication or verification fails, use neither result marker, do not claim success, and leave the thread open with the blocker. Finish only after every actionable thread is fixed or dispositioned and closed, or explicitly left open for a human decision. Do not update the branch from main, address unrelated reviews, broaden scope, or create more than one scoped fix commit. Do not use external APIs, paid services, credentials, dependency changes, or broad refactors unless explicitly authorized. Add targeted tests where behavior changes and run the narrowest relevant validation.`\n\n## Codex Cloud environment\n\nCodex Cloud uses an isolated Linux container and does not inherit desktop files,\ncredentials, OAuth sessions, MCP authentication, local services, or uncommitted work.\nUse `docs/codex-cloud.md` as the environment contract:\n\n- Configure setup as `bash scripts/setup-codex-cloud.sh && bash scripts/install-codex-cloud-command-shims.sh`.\n- Configure maintenance as `bash scripts/maintain-codex-cloud.sh && bash scripts/install-codex-cloud-command-shims.sh`.\n- Default to `CODEX_CLOUD_ACCESS_PROFILE=offline` for ordinary and protected RAG work.\n Use `connected` only when the user explicitly authorizes the required provider access.\n- When MCP tools are already callable in a Cloud session and the task needs them, use the host\n plugin/connector inventory. The production Supabase target is limited to prompted, read-only\n `docs` and `development` metadata tools; do not enable database, SQL, row, or log tools.\n Write-capable Figma, Railway, and Sentry tools still require explicit confirmation. Paid API\n canaries (`eval:rag`, `eval:retrieval:quality`, `eval:quality`, `verify:release`,\n `test:live`, `check:supabase-project`) still need explicit confirmation. Project\n `.codex/config.toml` keeps Desktop/CLI MCP entries `enabled = false` in git (`check:codex-cloud`\n fails if any tracked entry is enabled). Opt in locally via `$CODEX_HOME/config.toml` (preferred)\n or a never-committed project-file edit, then `codex mcp login railway`. Cloud setup never writes\n Railway or Supabase MCP registrations to `$CODEX_HOME`. Hosted ChatGPT/Codex requires an\n installed, workspace-authorized, OAuth-authenticated app, and a fresh task must prove the callable\n inventory with read-only identity calls. Root `.mcp.json` is a static cross-client template, not\n hosted runtime proof.\n- Cloud has no Windows task-start script. Report that exact fact, then perform equivalent\n read-only identity, branch, status, worktree, and Git-operation checks. Proceed only in a\n clean disposable checkout on a task-specific non-protected branch.\n- Cloud mirrors the tracked repository toolchain, not Windows files, `.env.local`,\n desktop plugins, browser sessions, OAuth sessions, user-global skills, or uncommitted\n work. Keep required workflows in tracked instructions, scripts, tests, and repo-local\n skills.\n- Repository setup cannot grant GitHub installation permissions, workspace RBAC, network\n policy, or provider credentials. Treat those as product/account settings and verify them\n separately without printing secret values.\n- In a fresh Cloud task, run `bash scripts/check-codex-cloud-raw-env.sh` before sourcing a\n profile or entering a login shell. It must report only provider variable names and presence,\n never values. Treat exit `1` / `FAIL`+`STOP` as a hard stop for any unexpected inherited name.\n Only exit `2` / `FAIL-KNOWN` for `OPENAI_BASE_URL` alone may use the restricted\n profile-and-shim continue path; do not generalize that allowance. Exit `2` is still a failed raw\n boundary — future automation must not treat non-1 as success or as a blind retry. That name can\n redirect OpenAI-bound traffic, so never invoke OpenAI clients from the raw parent or any binary\n that bypasses the profile/`node`/`npm`/`npx` scrub. Then run\n `npm run check:codex-cloud` directly; it must report the static-and-environment PASS line. Run\n `npm run check:codex-cloud -- --runtime` with `CODEX_CLOUD_EXPECTED_BASE_SHA` set to the\n intended merge/base commit when the checkout has only a task HEAD. Setup and maintenance may\n report freshness as unverified so provisioning remains repairable, but explicit acceptance must\n not pass an arbitrary HEAD. The command shims load the generated profile for normal `node`,\n `npm`, and `npx` work. Also run `npm run check:runtime` and\n `npm run check:installed-lock-parity` before trusting a new or reset environment. A skipped\n browser install is not full browser readiness. Output is limited to approved mode values,\n presence booleans, full Git commit identities, and MCP server/command/environment-variable\n names; never print credential values.\n- Do not add OpenAI, Supabase, Railway, GitHub, database, or user credentials as ordinary\n Cloud environment variables. Codex Cloud secrets are setup-only and unavailable to the\n agent phase unless the platform explicitly exposes a secret to the named task phase; do not\n copy them into files to bypass that boundary.\n- Provider-backed checks, hosted CI mutations, deployment, production data access, and\n Git publishing still require the explicit authorization defined above.\n- The ordinary offline Cloud profile intentionally cannot perform authenticated production or\n live-provider checks. `check:production-readiness` reports this as a provider capability gap.\n- Authenticated live tests run through the manual\n `.github/workflows/authenticated-live-tests.yml` GitHub Actions workflow, its explicit\n dispatch confirmation, and the `Database / production` environment, never by exposing\n credentials to the Codex Cloud agent shell.\n- The active hosted workspace is **Personal Pro**. Use Railway's installed official ChatGPT app\n with browser OAuth and **Allow read actions**; Personal Pro does not provide the dedicated-group\n RBAC or per-tool action disabling assumed by Enterprise/Edu instructions. Prove Railway with the\n callable tool inventory and a read-only identity/project-list call. Repository setup and local\n MCP config cannot activate it, and the Codex Cloud connector page currently offers no Railway\n connector. Use the documented split control plane: Codex Cloud for code and its native GitHub\n connector, ChatGPT web for Railway and project-scoped read-only Supabase. Every provider change\n still requires explicit approval. Enterprise/Edu custom-app controls are a future governance\n option, not the current workspace classification.\n CLI token auth is a separate operator capability: it requires a separately installed Railway CLI\n and a dedicated\n `RAILWAY_API_TOKEN`, and must never substitute `RAILWAY_TOKEN` or expose either token to an\n ordinary agent shell. GitHub connector access, GitHub CLI authentication, the credential-free\n `origin` URL, and shell Git authentication are separate capabilities.\n- For an explicitly authorised GitHub task, use the authenticated GitHub connector/MCP\n tools as the default remote control plane. Use them for repository, PR, issue, review\n thread, and Actions work, including inline-thread replies/resolution, Actions\n run/job/log/artifact inspection, and approved branch, file, or PR mutations. Missing\n `gh`, shell GitHub credentials, or direct shell network access is not a loss of this\n capability. The intended connection is `BigSimmo` with repository write access.\n Reserve administrator access for separately approved operations.\n- In Codex Cloud, use native Push, the authenticated GitHub connector, or GitHub's UI for branch\n publication and cleanup. `CODEX_CLOUD_GITHUB_PAT` is excluded from every Cloud agent shell.\n The helper `bash scripts/delete-codex-cloud-branch-with-pat.sh ` is\n operator-only outside Codex Cloud; it must reject `CODEX_CLOUD=1`, validate the exact\n non-protected ref and credential-free origin, and never print the token. If the native or\n connector path is unavailable, report the platform limit rather than copying a PAT into a\n profile, remote URL, cached file, or agent environment.\n- Confirm the exact repository and PR/thread/job before a write, and verify the connector\n result before treating the write as successful. A repository cannot sanitize a variable\n already inherited by the top-level task process; the tracked shims protect normal\n `node`/`npm`/`npx` commands. Report raw-parent exposure as a Codex Cloud launcher defect\n rather than weakening the provider-variable contract.\n- Cloud browser proof is Playwright/Chromium, Firefox, or WebKit container evidence, not\n physical iPhone Safari/PWA acceptance.\n\n## Cursor Cloud specific instructions (not Codex Cloud)\n\nDurable notes for Cloud Agents. Standard commands live in `README.md` and `package.json`; only non-obvious caveats are captured here.\n\n- Context7 peer-library docs habit (and the Next 16 local-docs carve-out) lives in `docs/agents-guide.md`. Project MCP is local `@upstash/context7-mcp@3.2.5` with `CONTEXT7_API_KEY` from env/Secrets. If the host-injected Context7 MCP returns quota exceeded, use `npx ctx7 library|docs …` with the same secret — do not invent peer APIs from training data.\n- Runtime: the app hard-requires Node >=24.15.0 <25 / npm 11.x (`engine-strict`; the preinstall and runtime gates enforce the minor floor, while `scripts/dev-free-port.mjs` rejects other majors). A compatible Node 24 is installed via nvm and symlinked into `/usr/local/cargo/bin` (first entry in `PATH`) so `node`/`npm` resolve to it in every shell. If a shell ever resolves `/exec-daemon/node` (v22) instead, prepend the installed nvm Node 24 bin to `PATH` (for example `\"$HOME/.nvm/versions/node/v24.18.1/bin\"`; run `ls \"$HOME/.nvm/versions/node\"` to confirm the exact patch version).\n- Live vs demo mode: the app auto-detects. When the Supabase + OpenAI env vars below are present (set them as Cloud Agent **Secrets** so they inject into `.env.local`/`process.env`), `isDemoMode()` (`src/lib/env.ts`) is false and the app runs against the live `Clinical KB Database` project (~2000 indexed docs) with OpenAI answer generation. When they are absent, dev auto-falls back to demo mode using the synthetic corpus in `src/lib/demo-data.ts` / `public/demo-documents/`. Required for live mode: `NEXT_PUBLIC_SUPABASE_URL`, `SUPABASE_PROJECT_REF`, `SUPABASE_PROJECT_NAME`, `NEXT_PUBLIC_SUPABASE_PUBLISHABLE_KEY` (`sb_publishable_…`), `SUPABASE_SERVICE_ROLE_KEY` (accepts the `sb_secret_…` secret key), `OPENAI_API_KEY`. Keep `RAG_PROVIDER_MODE=auto` so OpenAI is used with graceful source-only fallback. `E2E_USER_EMAIL`/`E2E_USER_PASSWORD` power CI env-check and Playwright.\n- Live-mode caveat: `RAG_PROVIDER_MODE=auto` attempts OpenAI (fast → strong route); if generation fails the built-in quality gates it silently degrades to a deterministic \"Source-only\" answer that still cites real documents — this is expected, not a failure. The header sign-in UI exposes magic-link + OAuth only (no password field), but the `/api/answer` + retrieval flow works server-side without a browser session.\n- What still won't run in this VM even with secrets: `npm run worker` also needs the Python OCR stack (`worker/python/requirements.txt`) and heavy parsing deps; Supabase edge functions need Deno v2.x + deployment. `verify:release` additionally runs governance/eval gates. Treat missing-secret failures of `check:supabase-project`/`verify:release` in demo mode as expected, not regressions.\n- Dev server: `npm run dev` selects a stable per-project localhost port (e.g. `4461`), binds `0.0.0.0`, and prints the exact URL. Never assume port 3000/3001/3002. `npm run ensure` starts/verifies it in the background.\n- Verification without secrets: `npm run lint`, `npm run typecheck`, and `npm run test` (vitest) all pass offline. `npm run verify:cheap` also runs runtime, GitHub Actions pin, CI-scope, and sitemap checks. `npm run verify:pr-local` adds format, conditional build/client-bundle scanning, and RAG fixture/manifest validation without repeating unit tests; browser, Docker/Supabase, audit, and provider checks remain separate. See `docs/testing.md` for lock, live-test, Playwright, and flake-ledger rules. If `check:installed-lock-parity` or `check:playwright-browser-revision` reports Playwright/image drift (`#255`), do not force a mismatched Chromium path — delegate browser proof to CI Production UI (see `docs/testing.md` § Testing speed playbook).\n- For GitHub-related work authorised in this session, prefer the connected GitHub\n connector/MCP tools first for PR, issue, comment, review-thread, and Actions tasks they\n support (including run/job/log/artifact inspection and review-thread replies/resolution).\n A missing `gh` CLI is not a blocker for connector-supported work; never add a PAT as a\n workaround. The intended connection is `BigSimmo` with repository write access.\n Reserve administrator access for separately approved operations. Verify the exact target and connector result before any write. Ordinary\n authorised shell `git` branch publication remains allowed; use shell `gh` only for a\n genuine connector gap and only when the task permits it.\n\n-- clinical skill --\n---\nname: clinical\ndescription: Assemble clinical safety, privacy, source-governance, rollback, and production-readiness evidence for Database changes. Use for answer generation, retrieval, ingestion, clinical content, source rendering, or other patient-safety-sensitive behavior.\n---\n\n# Clinical\n\n1. Run `npm run workflow:clinical-proof -- --write-evidence` for the affected paths.\n2. Trace the clinical claim path from source and retrieval through generation and rendering.\n3. Check conservative failure behavior, ownership, privacy, citations, metadata, and rollback.\n4. Add the smallest deterministic local safety proof and run relevant offline domain checks.\n5. Complete the governance checklist required by `.github/pull_request_template.md` for handoff.\n6. Keep live Supabase, OpenAI, production-readiness, and provider evaluations approval-gated.\n\n-- test skill --\n---\nname: test\ndescription: Choose and run the smallest relevant local Database test, reproduce failures deterministically, and widen verification only when needed. Use for test requests, behavioral proofs, or focused regression coverage.\n---\n\n# Test\n\n1. Inspect the touched behavior and existing nearby tests before selecting a command.\n2. Prefer a single Vitest or Playwright target; use `npm run test:focused -- --files ` only for safe source-only changes.\n3. Add the smallest deterministic regression proof when behavior is unprotected.\n4. Let the repository coordinator admit up to two focused Vitest/read-only typecheck leases from different worktrees. Run full Vitest, coverage, lint, build, Playwright, and live-provider checks exclusively, and rerun the smallest failing check after each fix.\n5. Keep live/provider-backed tests approval-gated.\n6. Report exact commands, exit codes, coverage limits, and tests not run.\n",{"_899":4040,"_881":4041,"_860":861,"_883":867},1786564497737,{"_923":4042,"_925":4043,"_927":4044,"_929":930,"_865":4045,"_932":35,"_45":4046,"_934":4047,"_936":937,"_874":117,"_96":938},"../Database/AGENTS.md\n../Database/node_modules/next/AGENTS.md\n../Database/node_modules/@supabase/realtime-js/AGENTS.md\n../Database/node_modules/@supabase/supabase-js/AGENTS.md\n../Database/node_modules/@supabase/storage-js/AGENTS.md\n../Database/node_modules/@supabase/auth-js/AGENTS.md\n../Database/node_modules/@supabase/functions-js/AGENTS.md\n../Database/node_modules/@supabase/postgrest-js/AGENTS.md\n\n-- root instructions --\n\n\n# This is NOT the Next.js you know\n\nThis version has breaking changes — APIs, conventions, and file structure may all differ from your training data. Read the relevant guide in `node_modules/next/dist/docs/` (resolved from this file's directory; in monorepos the `next` package may not be visible from the repo root) before writing any code. Heed deprecation notices.\n\nThis block is written and re-added by `next dev` — verify at `node_modules/next/dist/server/lib/generate-agent-files.js`. Removing it from a diff only re-creates the uncommitted change; committing it with your work keeps the tree clean.\n\n\n\n\n\n## Dependency shortcut\n\nWhen the user types exactly `dependency` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for safe dependency maintenance. This is a Codex chat shortcut, not an app feature, script, automation, or CI workflow.\n\nGoal:\nUpdate direct project dependencies to the newest stable compatible versions, regenerate the existing lockfile, identify source/config/test code that relies on old dependency behavior, make the smallest safe compatibility changes, and verify the result. Do not rewrite the project, switch package managers, discard user work, commit, push, deploy, or run destructive cleanup without explicit confirmation.\n\nStart with read-only inspection:\n\n- Check branch, upstream, worktrees, recent relevant history, and `git status`.\n- If on `main`, `master`, `develop`, `release/*`, or another protected/base branch, create/switch to `codex/dependency-maintenance` before editing, if safe.\n- Inspect manifests, lockfiles, package-manager config, runtime/toolchain files, workspace layout, CI config, scripts, and documented checks.\n- Detect repo-local install/dev/test/build/watch/server processes that could race dependency updates.\n- Preserve all existing staged, unstaged, and untracked user work.\n\nPackage-manager rules:\n\n- Use the package manager already used by the repo: npm, pnpm, yarn, bun, pip, poetry, uv, cargo, go, bundler, gradle, maven, dotnet, or equivalent.\n- Do not switch package managers or create a new lockfile type.\n- Respect engines, runtime versions, lockfiles, workspaces, wrappers, and repo conventions.\n- In monorepos or polyglot repos, update each ecosystem through its native workspace-aware workflow.\n\nDependency update rules:\n\n- Identify outdated direct production and development dependencies.\n- Compare both manifest ranges and locked/installed versions against latest stable compatible releases.\n- Treat “outdated packages found” exit codes as normal where applicable.\n- Avoid prerelease, alpha, beta, canary, rc, next, nightly, and experimental versions unless the stable channel points there and explain why.\n- Do not use force or legacy flags that bypass peer, engine, resolver, or lockfile integrity checks unless explicitly approved.\n- Do not run forced audit fixes or broad destructive codemods.\n- If latest is incompatible, use the newest compatible version and document why.\n- Group risky updates coherently, such as framework plus plugins, test runner plus coverage, lint core plus plugins, or runtime plus adapter packages.\n\nCompatibility audit:\n\n- For every major update and every core framework/runtime/build/test/lint/UI/database update, inspect release notes, migration guides, peer ranges, engines, and changelogs when available.\n- Search source, tests, scripts, config, and CI for imports, APIs, CLI flags, config keys, environment variables, plugin names, generated types, or file paths tied to changed dependencies.\n- If old dependency behavior is used, make the smallest safe migration that preserves behavior.\n- If migration is large, risky, architectural, or product-affecting, stop after discovery and provide a concrete fix plan with affected files, package versions, sequence, and verification commands.\n- Add or adjust focused tests only when needed to prove migrated behavior.\n\nGenerated and sensitive files:\n\n- Do not intentionally keep dependency directories, build outputs, caches, logs, local state, test artifacts, browser artifacts, `.env*`, secrets, keys, tokens, credentials, or machine-local config.\n- Manifest and existing lockfile changes are allowed.\n\nVerification:\n\n- Run a cheap baseline first when useful to distinguish pre-existing failures.\n- After updates, run install/dependency validation, then relevant lint, type check, tests, build, smoke/UI/a11y, codegen, integration checks, or equivalent.\n- For frontend/browser-facing changes, run browser/UI verification when framework, bundler, router, styling, test runner, or browser automation changed.\n- If a check fails, fix dependency-related breakage and rerun the smallest failing check before broader checks.\n- Run non-mutating audit/vulnerability checks when available.\n- Confirm no repo-owned dev server, watcher, or temporary process was left running unless requested.\n\nFinal response for `dependency` must include:\n\n- Branch and worktree state.\n- Package manager, runtime, manifests, and lockfiles detected.\n- Outdated dependencies found.\n- Dependencies updated, old version -> new version.\n- Dependencies not updated and why.\n- Files changed.\n- Compatibility migrations and old APIs found/fixed.\n- Checks run and results.\n- Checks not run and why.\n- Audit/vulnerability summary.\n- Generated/untracked files left behind.\n- Branch movement, external repo changes, or process cleanup observed.\n- Risks or follow-up work.\n- Confirmation that no commit or push was made unless explicitly requested.\n\nAfter setup:\n\n- Verify root `AGENTS.md` contains exactly one `## Dependency shortcut` section.\n- Show the final diff for `AGENTS.md`.\n- Summarize what changed.\n- Confirm no dependency update, install, test, build, audit, commit, or push was performed.\n\n\n\n\n\n## Bug-hunter shortcut\n\nWhen the user types exactly `bug-hunter` as the entire task message, after trimming surrounding whitespace, treat it as a shortcut for targeted defect discovery.\n\nExecution rules:\n\n- Invoke the `bug-hunter` skill first.\n- Prioritize reproducible defects over code style, naming, or formatting feedback.\n- Trace realistic failure paths: invalid input, empty states, retries, race/concurrency issues, stale state/cache, network/auth failures, permissions, and boundary values.\n- For each finding, include trigger, expected behavior, actual risk, and the smallest proof (or targeted test/check) that would catch it.\n- If no high-confidence defect is found, explicitly state that and list the most likely residual risk area.\n\nScope and safety:\n\n- Keep the hunt scoped to code touched by the user request unless the defect clearly crosses module boundaries.\n- Do not make broad refactors while hunting; propose minimal fixes for confirmed issues.\n- Run the smallest focused verification for each confirmed defect, then expand only if needed.\n\n\n\n\n\n## Codex review throttling and routing\n\nDo not review branches opportunistically. Review the current changed diff, PR, or branch only when the user explicitly asks for review/audit/hunter/cleanup/upload work, when CI/check failures are the task, or when the current change touches high-risk areas that require a targeted review before handoff.\n\nUse `docs/codex-review-protocol.md` as the shared review protocol for every repo-local review skill, branch/PR review, audit, bug hunt, release-readiness check, and PR/CI review.\n\nBefore reviewing a branch or PR:\n\n- Run `npm run ledger:lookup -- --scope \"\"`. It resolves the HEAD, matches the abbreviated SHAs older records used, and prints an explicit verdict. Do not read `docs/branch-review-ledger.md` by eye — live + archive rows are many, and eyeballing is how repeat reviews slipped through. `ledger:lookup` reads archives under `docs/archive/branch-review-ledger-*.md` too.\n- On `ALREADY REVIEWED`, summarize the prior ledger outcome and skip the repeat review unless the user explicitly requests a fresh pass.\n- On `NOT REVIEWED at this HEAD`, review only the changed scope and append a record after the review.\n\nBefore reviewing multiple branches:\n\n- Build a short branch inventory first: branch, upstream, ahead/behind, last commit, and merged status.\n- Skip branches already merged into `main`.\n- Skip unchanged branches already recorded in `docs/branch-review-ledger.md`.\n- Do not re-review every branch after ordinary coding tasks.\n- If a repeated request targets unchanged reviewed branches, summarize the prior result and ask before doing another full pass.\n\nReview routing:\n\n- `diff-review`: Use for explicit review of the current diff, PR, or named branch. Findings first, ordered by severity, with file/line evidence.\n- `bug-hunter`: Use only for the exact `bug-hunter` shortcut or an explicit defect-hunt request. Prioritize reproducible bugs and smallest proof.\n- `repo-auditor`: Use for explicit repo-wide audit/refactor/dead-code/import/dependency-structure requests. Treat outputs as triage, not automatic delete lists.\n- `release-readiness`: Use for explicit release, merge, PR readiness, or handoff confidence requests. Do not run provider-backed gates without confirmation.\n- `branch-cleanup`: Use only when the prompt explicitly asks for branch cleanup/hygiene or branch deletion candidates. Apply `docs/branch-cleanup-guide.md` and the review ledger before inspecting branch diffs.\n- `pr-ci-fix`: Confirmation-required for this repo. GitHub/GitLab API calls, PR comments, CI reruns, commits, and pushes require explicit user approval and must respect the upload/handoff rules. Exception: an explicit `Run PR` sweep carries this approval (see \"## Run PR shortcut\").\n\nWhen a branch or PR review completes, record it with `npm run ledger:append -- --ref --head --scope --outcome --checks `. Never hand-write the markdown row: hand-written rows produced the mojibake, wrong-width, and duplicate records that the 2026-07-28 hygiene pass had to repair, and `see PR head` or abbreviated HEADs make a record unmatchable so the review runs again. The ledger is append-only: never edit or delete an existing record; append a correction or superseding record (`--supersede`) instead. Its `merge=ledger` driver preserves concurrent appends and drops exact duplicate rows; after a main sync without that driver installed, run `npm run ledger:dedupe`. `npm run check:branch-review-ledger` blocks conflict markers, duplicate records, mojibake, wrong-width or heading-style records, unresolvable HEADs, or loss of that merge protection.\n\nBabysit / Run PR ledger policy: do not push a tip whose sole delta is a babysit ledger append (that marks every other open PR behind). One Run PR row per PR per sweep; on a later sweep of the same PR, pass `--supersede` rather than stacking another \"main sync\" row. After `git merge origin/main`, run `npm run ledger:dedupe` before committing when the ledger changed.\n\n\n\n\n\n# Local server safety\n\n- If the user says `run`, execute `npm run ensure` and return the printed URL.\n- If the user asks for UI/frontend changes, browser QA, screenshots, mobile checks, or a local app link, run `npm run ensure` before opening or testing the app, even if the user did not say `run`.\n- Never assume `localhost:3000`, `localhost:3001`, or `localhost:3002`.\n- Never attach to a local server unless `/api/local-project-id` confirms it is this project.\n- Do not kill or modify other projects' local servers. If the stable project port is busy, let `npm run ensure` choose the next safe project URL.\n- Do not run a permanent watcher. Only start or verify the server when the current chat task needs the app or the user asks to run it.\n\n\n\n\n\n# Codex Desktop worktree setup\n\n- The Windows Codex Desktop environment setup command is `node scripts/setup-codex-worktree.mjs`.\n It must work before `node_modules` exists, validate Node 24/npm 11, reuse only a complete\n byte-identical local installation, and otherwise run the locked npm install.\n- Never configure Windows Desktop worktrees to run `bash scripts/setup-codex-cloud.sh`. That script\n is Linux/Cloud-only; Windows launches it through WSL outside the worktree and cannot provision the\n repository.\n- `.codex/environments/environment.toml` is autogenerated and ignored. Change the Database\n environment through Codex settings, then verify the effective command with the generated file and\n `node scripts/setup-codex-worktree.mjs --dry-run`.\n\n\n\n\n\n# Reasoning effort calibration\n\nReasoning effort is a budget in the same way verification is a budget, and it is misspent the same\nway — by defaulting to the maximum instead of matching the spend to the risk. **Scale effort to how\nexpensive the mistake is to undo (irreversibility × branching factor), never to the phase label.**\n\"Plan high, build lower\" is a good default, not a rule; it is wrong often enough that it must be\nchosen deliberately rather than assumed.\n\n**Why it is a good default.** Planning errors compound and implementation errors stay local: a wrong\napproach throws away the build, a wrong identifier is one edit. A plan is also a few thousand output\ntokens against a build's many long turns, so effort is cheapest exactly where it has the most leverage.\n\n**The mechanism that makes it work — do not skip this part.** A lower-effort build only succeeds\nagainst a plan concrete enough to execute: named files, named symbols, ordered steps, and the gate\nthat will prove it. Downgrading the build against a vague plan does not save effort, it relocates the\nthinking into the expensive phase. If the plan cannot name those things, the build is not eligible for\nthe downgrade.\n\n| Situation | Plan | Build |\n| ---------------------------------------------------------------------------------------------- | ----------- | ----------- |\n| Architecture, Supabase migrations/RLS, RAG ranking surfaces, auth/privacy, ingestion contracts | xhigh | high |\n| Ordinary feature or UI work with a clear shape | high | medium–high |\n| Mechanical and fully specified — ledger append, docs edit, rename (not dependency maintenance) | low or skip | medium |\n| Debugging an unknown failure | low | high |\n\n**Where the default inverts and the build needs more than the plan.** These are plan-light and\nexecution-heavy; treating them as plan-heavy spends the budget in the wrong place:\n\n- **Debugging.** The plan is \"find why X fails.\" The real reasoning is hypothesis-forming over local\n runtime, logs, and repro state during the build — hosted providers still need explicit confirmation.\n- **Constraint-dense implementation.** A one-sentence plan whose edit must simultaneously satisfy\n button wiring, design tokens, the one-composer rule, unlayered CSS, and the tap-target and\n phone-chrome contracts. Holding all of it at once is the hard part, not deciding what to do.\n- **Areas where training data is stale.** Next 16 is the standing case. Effort does not repair a wrong\n prior — reading `node_modules/next/dist/docs/` does. Raising effort instead of reading is itself the\n failure mode.\n\n**Constrain xhigh planning output, not just its effort.** Extra-high planning over-produces:\nalternatives, contingency branches, and surveys that are never used, paid for twice — once generating\nand once reading. Ask for the chosen approach, the files, and the gate, not a survey.\n\n**State the split before non-trivial planning work.** One line before starting: plan effort, build\neffort, and the risk that justifies them. It is cheap, it makes a wrong allocation visible while it is\nstill free to change, and it stops the blanket default from being applied silently.\n\n\n\n\n\n# Process hardening phases\n\n- **Verification principle:** run the smallest check capable of detecting a plausible regression introduced by the current diff. Before starting a check, identify the failure class it covers, whether a successful check already covered that class, whether a cheaper focused check offers comparable detection, and whether the incremental confidence justifies the runtime, resource use, and repository-lock contention. If there is no plausible changed failure path, do not run the check.\n\n| Tier | Use when | Default evidence |\n| ----------------------- | ----------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------- |\n| 0 — No test command | Explanation, planning, prompt writing, read-only inspection, or no repository change | No test, build, server, or baseline command |\n| 1 — Static/focused | Documentation, comments, metadata, or narrow non-behavioural configuration | Relevant format, docs, syntax, generated-file, or diff check only |\n| 2 — Focused behavioural | A localized helper, component, contract, or test change | Directly affected unit/DOM/contract test; add typecheck only when the edit can affect compilation or a type contract |\n| 3 — Domain gate | Shared UI/routing, dependencies, security, privacy, RAG, clinical output, production configuration, or another cross-cutting domain | The smallest applicable repository/domain selector, focused journey, or contract gate |\n| 4 — Broad handoff | The diff crosses multiple subsystems, cannot be bounded reliably, or the task explicitly requires PR/release confidence | One appropriate broad gate, selected rather than stacked by default |\n\n- Do not run a broad baseline routinely before localized work, and do not select `verify:cheap` merely because a change is described as “non-trivial.” Use `npm run verify:cheap` once when cross-module risk warrants a broad offline gate. Use `npm run verify:pr-local` when a change is ready for PR handoff: it now classifies the changed paths, runs focused documentation/workflow contracts for recognised low-risk scopes, and fails closed to lint, typecheck, the full unit suite, RAG fixture validation, and relevant build/domain gates for executable or unknown scope. If the diff has not changed, do not run `verify:cheap` first merely to repeat the same coverage.\n- Do not stack focused tests, full tests, typecheck, lint, build, and browser checks unless each catches a distinct plausible regression. Do not rerun an unchanged successful gate. A deliberately skipped low-yield broad gate is not automatically verification debt; report the skipped check and its risk-based reason concisely.\n- A fast-fail subset may precede a broader required gate only when the later gate excludes that subset for the same event; retain a fail-safe full path whenever the subset is skipped. Likewise, do not pre-run a build, install, or server setup that the selected wrapper performs itself. Guard these disjoint/fallback rules with workflow contract tests so a later edit cannot silently restore duplicate work or create a coverage hole.\n- Use dry-run selectors before expensive gates when scope is uncertain. `npm run verify:pr-local -- --dry-run --files ` inspects PR-local selection without running commands. The broader `--extended` plan is dry-run only unless explicit approval is reflected by `ALLOW_EXTENDED_PR_LOCAL=true`.\n- CI uses the same fail-closed scope model: recognised docs and workflow/policy-only changes run focused contracts; executable product/test/config, dependency, database, container, RAG, security-sensitive, mixed, or unknown paths retain the applicable heavy jobs. Do not broaden a path trigger or restore an always-on heavy job without evidence that the focused route misses a realistic failure class. Scheduled drift/release checks and the always-reporting `PR required` aggregate remain safety backstops.\n- Let the repository run coordinator control cross-worktree verification. It permits at most two focused Vitest/read-only typecheck leases from different worktrees; full Vitest, coverage, lint, build, Playwright, and live-provider tests remain exclusive. Do not install while a repository test, build, lint, typecheck, or server command is active. Avoid aggressive short-interval polling, and do not repeat an unchanged full gate after it passes.\n- For UI, frontend, browser, routing, styling, reduced-motion, or forced-colors behaviour changes, run `npm run ensure` before browser work and prove the changed owner or journey first. Use `npm run verify:ui` when shared UI foundations changed or PR/handoff policy requires the complete Chromium gate, not as an automatic addition after focused proof. For phone-chrome changes, run `npm run verify:phone-chrome` first: it checks installed-lock parity, selects the affected browser/PWA owners and exact journeys, and adds `verify:ui` last only when shared chrome foundations make the broad gate necessary. Inspect uncertain scope with `-- --dry-run`. Chromium evidence does not close physical Safari or installed-PWA acceptance gaps.\n- **Run `npm run format` and commit the result before every push.** Formatting is in neither `npm run test`, `npm run typecheck`, nor `npm run lint`, so the ordinary loop can report green while the changed-file CI check or exact-commit pre-push guard fails. Three CI failures on 2026-07-30 came from exactly this (two of them on `ci/circleci: verify`, since removed from the repo by PR #1412). Two traps beyond simply running it:\n - **Formatting without committing does nothing for the push.** A push sends commits, not your working tree, so formatting after committing leaves the unformatted blob on the branch. Amend or add a follow-up commit.\n - **A per-file check is not the repository-wide check.** `prettier --check ` on the source file you edited passes while a doc or ledger edit in the same push fails; that was the missed file twice out of three.\n\n `.githooks/pre-push` carries the guard, and since 2026-07-30 it checks the pushed commit where CI checks it: `guard-push.mjs` puts the pushed SHA in a temporary `git worktree` with an exact-lock `node_modules` linked in and runs Prettier there, so neither the working tree's contents nor its prettier config can vouch for the commit, and a dynamic `prettier.config.*` still loads. An isolated worktree without local dependencies may reuse Prettier only from a registered worktree with a byte-identical lockfile and matching installed Prettier version; if none exists, the guard blocks with the explicit `npm ci --include=dev` remediation instead of skipping formatting. A push that changes prettier policy (`.prettierrc*`, `.prettierignore`, `.editorconfig`, or a `package.json` carrying a `prettier` field) escalates to a whole-tree `prettier --check .`, because a policy change alters the verdict for files the push never touched. But `core.hooksPath` is set by this checkout's `npm install`, so an agent pushing from its own environment bypasses the hook entirely and only CI catches the break — which is why the rule above is still a rule.\n\n- For explicit release confidence, use `npm run verify:release` once; this includes the full Playwright project set and retains all provider-approval requirements. Ordinary local completion or PR handoff does not by itself authorize or require this release gate.\n- For clinical ingestion, answer generation, source governance, privacy, production-readiness, or environment changes, run the smallest relevant domain check plus `npm run check:production-readiness`.\n- For pull requests that touch ingestion, answer generation, search/ranking, source rendering, document access, privacy, production env, or clinical output, complete the clinical governance preflight in `.github/pull_request_template.md`.\n- Track known verification debts and staged process improvements in `docs/process-hardening.md` instead of relying on chat-only memory.\n\n\n\n\n\n# Page and button wiring\n\nInteractive controls and routes follow conventions the codebase already holds to. Before adding\nor moving a button, link, or route, read `docs/wiring-conventions.md`. A control that advertises an\naction must perform one; a page that ships must be reachable.\n\n- **Buttons.** Every interactive `~~\n@@ -313,51 +298,55 @@ export function PatientProfilePanel({\n Creatinine unit\n \n \n~~
\n
\n \n
\n \n Hepatic impairment\n \n updateField(\"hepatic\", value === \"none\" ? null : value)}\n options={HEPATIC_OPTIONS}\n layout=\"fit\"\n />\n
\n \n- \n+ \n \n
\n Allergies\n
\n {ALLERGY_OPTIONS.map((option) => {\n const active = allergies.has(option.value);\n return (\n toggleAllergy(option.value)}\n data-testid={`patient-allergy-${option.value}`}\n className={cn(segmentBase, active ? segmentActive : segmentIdle)}\n >\n {option.label}\n \n );\n })}\n
\n
\n \n
\n \n \n term.surfaces.map((surface) => ({ surface: surface.toLowerCase(), term })),\ndiff --git a/src/lib/medication-interactions.ts b/src/lib/medication-interactions.ts\nindex e16e53de9d72ae96be4c9ed3d5ca73f56f515ee8..eedab6cf498374ff2c7683edd90ad749bae01ceb 100644\n--- a/src/lib/medication-interactions.ts\n+++ b/src/lib/medication-interactions.ts\n@@ -33,50 +33,52 @@ export type MedicationInteraction = {\n * Lexicon term ids that fired on this row, for auditability. Row-level, not\n * per-counterparty: a row naming \"MAOIs, Tramadol\" reports both terms for\n * either match. Empty when the row resolved purely by drug name.\n */\n matchedTerms: string[];\n severity: InteractionSeverity;\n tone: SemanticTone;\n /** `row.key` — \"Pharmacodynamic\", \"Pharmacokinetic\", \"Triple Whammy\", … */\n kind: string;\n /** VERBATIM catalogue row text. Never paraphrased. */\n note: string;\n };\n \n export type MedicationInteractionResult = {\n interactions: MedicationInteraction[];\n counts: Record;\n /** Highest tone across matched interactions, or null when none matched. */\n highestTone: SemanticTone | null;\n /**\n * Interaction rows on this medication whose counterparty could not be\n * machine-resolved. Non-zero must suppress any green verdict.\n */\n unresolvedRowCount: number;\n /** Total interaction rows the catalogue carries for this medication. */\n totalRowCount: number;\n+ /** False when the catalogue names the medication but the index has no entry. */\n+ dataAvailable: boolean;\n };\n \n type IndexRow = {\n rowKey: string;\n rowIndex: number;\n severity: string;\n counterparties: string[];\n termIds: string[];\n resolved: boolean;\n };\n type InteractionIndexShape = {\n version: number;\n sourceRowCount: number;\n names: Record;\n bySlug: Record;\n };\n \n const INDEX = interactionIndex as unknown as InteractionIndexShape;\n \n /** Display name for a catalogue slug, falling back to the slug itself. */\n export function medicationDisplayName(slug: string): string {\n return INDEX.names[slug] ?? slug;\n }\n \n export type MedicationOption = { slug: string; name: string };\n@@ -147,93 +149,110 @@ export function interactionRowCount(slug: string): number {\n \n /**\n * Evaluate one medication against the patient's current medication list.\n *\n * `patientMedicationSlugs` are catalogue slugs. The source medication is\n * excluded automatically, so a patient already taking the drug being viewed does\n * not produce a self-interaction.\n */\n export function evaluateMedicationInteractions(\n slug: string,\n patientMedicationSlugs: readonly string[],\n /**\n * The medication's own record, when the caller has it. Used to recover the\n * verbatim `Key Interactions` row text by index — that text is deliberately\n * not duplicated into the generated index (see the build script). Without a\n * record the interaction still reports correctly, just with an empty `note`.\n */\n record?: { sections?: { type: string; rows?: { key: string; val: string }[] }[] } | null,\n ): MedicationInteractionResult {\n const entry = INDEX.bySlug[slug];\n if (!entry) {\n return {\n interactions: [],\n counts: { ...EMPTY_COUNTS },\n highestTone: null,\n- unresolvedRowCount: 0,\n+ unresolvedRowCount: 1,\n totalRowCount: 0,\n+ dataAvailable: false,\n };\n }\n \n const patient = new Set(patientMedicationSlugs.filter((value) => value !== slug));\n const interactions: MedicationInteraction[] = [];\n const sourceRows = record?.sections?.find((section) => section.type === \"inter\")?.rows ?? [];\n \n- for (const row of entry.rows) {\n- for (const counterpartySlug of row.counterparties) {\n- if (!patient.has(counterpartySlug)) continue;\n- const severity = normaliseSeverity(row.severity);\n- interactions.push({\n- id: `${slug}:${row.rowIndex}:${counterpartySlug}`,\n- counterpartySlug,\n- counterpartyName: medicationDisplayName(counterpartySlug),\n- matchedTerms: row.termIds,\n- severity,\n- tone: SEVERITY_TONE[severity],\n- kind: row.rowKey,\n- note: sourceRows[row.rowIndex]?.val ?? \"\",\n- });\n+ const addMatches = (\n+ sourceSlug: string,\n+ rows: IndexRow[],\n+ counterpartySlugs: ReadonlySet,\n+ reverse = false,\n+ ) => {\n+ for (const row of rows) {\n+ for (const matchedSlug of row.counterparties) {\n+ if (!counterpartySlugs.has(matchedSlug)) continue;\n+ const counterpartySlug = reverse ? sourceSlug : matchedSlug;\n+ const severity = normaliseSeverity(row.severity);\n+ interactions.push({\n+ id: `${sourceSlug}:${row.rowIndex}:${matchedSlug}`,\n+ counterpartySlug,\n+ counterpartyName: medicationDisplayName(counterpartySlug),\n+ matchedTerms: row.termIds,\n+ severity,\n+ tone: SEVERITY_TONE[severity],\n+ kind: row.rowKey,\n+ note: sourceSlug === slug ? (sourceRows[row.rowIndex]?.val ?? \"\") : \"\",\n+ });\n+ }\n }\n+ };\n+\n+ addMatches(slug, entry.rows, patient);\n+ for (const patientSlug of patient) {\n+ if (interactions.some((interaction) => interaction.counterpartySlug === patientSlug)) continue;\n+ const reverseEntry = INDEX.bySlug[patientSlug];\n+ if (reverseEntry) addMatches(patientSlug, reverseEntry.rows, new Set([slug]), true);\n }\n \n interactions.sort((a, b) => {\n const byTone = SEMANTIC_TONE_PRIORITY[b.tone] - SEMANTIC_TONE_PRIORITY[a.tone];\n if (byTone !== 0) return byTone;\n const bySeverity = SEVERITY_ORDER.indexOf(a.severity) - SEVERITY_ORDER.indexOf(b.severity);\n if (bySeverity !== 0) return bySeverity;\n return a.counterpartyName.localeCompare(b.counterpartyName);\n });\n \n const counts: Record = { ...EMPTY_COUNTS };\n for (const interaction of interactions) counts[interaction.tone] += 1;\n \n return {\n interactions,\n counts,\n highestTone: interactions[0]?.tone ?? null,\n unresolvedRowCount: entry.unresolvedRowCount,\n totalRowCount: entry.rows.length,\n+ dataAvailable: true,\n };\n }\n \n // ---------------------------------------------------------------------------\n // Composition with the physiology engine\n // ---------------------------------------------------------------------------\n \n export type MedicationVerdict = {\n tone: SemanticTone;\n /** True when something prevented a complete assessment (grey, not green). */\n incomplete: boolean;\n interactionCount: number;\n considerationCount: number;\n unresolvedRowCount: number;\n };\n \n /**\n * Fold the physiology considerations and the interaction matches into the single\n * tone a result row's border wears.\n *\n * Precedence is the shared `SEMANTIC_TONE_PRIORITY` ladder (danger 6 → info 1),\n * with one override that is the whole point of the function: if either engine\n * reports something it could not assess, a would-be `success` degrades to\n * `neutral`. Green must be unreachable on incomplete data — the same fail-safe\n * `evaluatePatientAlerts` already applies through its `unassessed` list.\ndiff --git a/tests/medication-interaction-lexicon-coverage.test.ts b/tests/medication-interaction-lexicon-coverage.test.ts\nindex 12061b84fd6276eb53643bd2b652e2bb1d97e1cb..fbdb0758311dd19ca98cf60e8eebd00c42a6c2bc 100644\n--- a/tests/medication-interaction-lexicon-coverage.test.ts\n+++ b/tests/medication-interaction-lexicon-coverage.test.ts\n@@ -30,51 +30,53 @@ type IndexRow = {\n const index = JSON.parse(\n readFileSync(path.resolve(process.cwd(), \"data/medication-interaction-index.json\"), \"utf8\"),\n ) as {\n sourceRowCount: number;\n stats: { resolvedRows: number; unresolvedRows: number };\n bySlug: Record;\n };\n \n const records = loadMedicationSnapshot();\n \n function term(id: string): LexiconTerm {\n const found = INTERACTION_LEXICON.find((item) => item.id === id);\n if (!found) throw new Error(`Lexicon term \"${id}\" not found`);\n return found;\n }\n \n function slugsFor(id: string): string[] {\n const found = term(id);\n return found.select ? selectCatalogueSlugs(found.select, records) : [];\n }\n \n describe(\"interaction lexicon coverage\", () => {\n it(\"does not regress the number of resolved rows\", () => {\n // Ratchet. Raise it when resolution genuinely improves; never lower it\n // without recording why in the PR.\n- expect(index.stats.resolvedRows).toBeGreaterThanOrEqual(400);\n+ // Mixed rows containing a still-unenumerated mechanism remain unresolved;\n+ // 355 is the conservative baseline after that false-green fix.\n+ expect(index.stats.resolvedRows).toBeGreaterThanOrEqual(355);\n expect(index.sourceRowCount).toBeGreaterThanOrEqual(523);\n });\n \n it(\"keeps every unresolved row visible rather than dropping it\", () => {\n const rowTotal = Object.values(index.bySlug).reduce((total, entry) => total + entry.rows.length, 0);\n expect(index.stats.resolvedRows + index.stats.unresolvedRows).toBe(rowTotal);\n expect(rowTotal).toBe(index.sourceRowCount);\n });\n \n it(\"marks a row unresolved when its only counterparty is an unenumerable mechanism\", () => {\n const unresolved = Object.values(index.bySlug)\n .flatMap((entry) => entry.rows)\n .filter((row) => !row.resolved);\n expect(unresolved.length).toBeGreaterThan(0);\n });\n \n it(\"addresses a real catalogue row from every rowIndex it emits\", () => {\n // `note` is intentionally not duplicated into the index; the UI recovers the\n // verbatim text by indexing into the record. That only works if every\n // emitted rowIndex still addresses a real row, so pin it for all 523.\n for (const [slug, entry] of Object.entries(index.bySlug)) {\n const record = records.find((item) => item.slug === slug);\n const sourceRows = record?.sections.find((section) => section.type === \"inter\")?.rows ?? [];\n for (const row of entry.rows) {\n const source = sourceRows[row.rowIndex];\n@@ -102,53 +104,57 @@ describe(\"lexicon deny-lists (the traps this module exists for)\", () => {\n expect(opioids).not.toContain(\"naltrexone\");\n expect(opioids).not.toContain(\"naloxone\");\n });\n \n it(\"resolves beta blockers across both catalogue spellings\", () => {\n const betaBlockers = slugsFor(\"beta-blockers\");\n // \"Beta Blocker\" (metoprolol) and \"Beta-Blocker\" (propranolol).\n expect(betaBlockers).toContain(\"metoprolol\");\n expect(betaBlockers).toContain(\"propranolol\");\n });\n \n it(\"prefers the specific class over the generic one\", () => {\n const thiazides = slugsFor(\"thiazide-diuretics\");\n const loops = slugsFor(\"loop-diuretics\");\n expect(thiazides.length).toBeGreaterThan(0);\n expect(loops.length).toBeGreaterThan(0);\n expect(thiazides.some((slug) => loops.includes(slug))).toBe(false);\n });\n });\n \n describe(\"non-drug and external terms\", () => {\n const nonMatching = INTERACTION_LEXICON.filter(\n (item) => item.kind === \"nonDrug\" || item.kind === \"external\" || item.kind === \"mechanism\",\n );\n \n- it(\"never resolves to a catalogue medication\", () => {\n+ it(\"only permits the explicitly partial CNS mechanism selector\", () => {\n for (const item of nonMatching) {\n- expect(item.select, `${item.id} must not carry a catalogue selector`).toBeUndefined();\n+ if (item.id === \"cns-depressants\") {\n+ expect(item.select?.classes).toEqual([\"Benzodiazepine\"]);\n+ } else {\n+ expect(item.select, `${item.id} must not carry a catalogue selector`).toBeUndefined();\n+ }\n }\n });\n \n it(\"classifies alcohol, grapefruit and smoking as non-drug\", () => {\n for (const id of [\"alcohol\", \"grapefruit\", \"smoking\", \"acidic-drinks\"]) {\n expect(term(id).kind).toBe(\"nonDrug\");\n }\n });\n \n it(\"classifies bare CYP and P-gp classes as unenumerable mechanisms\", () => {\n for (const id of [\"cyp-inhibitors\", \"cyp-inducers\", \"pgp\", \"cns-depressants\"]) {\n expect(term(id).kind).toBe(\"mechanism\");\n }\n });\n \n it(\"produces no counterparties for a row whose only term is non-drug\", () => {\n // Clozapine's CRITICAL smoking row.\n const smokingRows = (index.bySlug.clozapine?.rows ?? []).filter((row) => row.termIds.includes(\"smoking\"));\n expect(smokingRows.length).toBeGreaterThan(0);\n expect(smokingRows.every((row) => row.counterparties.length === 0)).toBe(true);\n });\n \n it(\"resolves a non-drug-only row rather than leaving it for manual review\", () => {\n // \"Smoking\" is fully understood — it just is not a medicine. That is a\n // different thing from \"we could not read this row\", and must not push the\ndiff --git a/tests/medication-interactions.test.ts b/tests/medication-interactions.test.ts\nindex a3bb000c1e6e00e178d1b08993be555272aa2820..095af0fb1e30706e55e73a6de4ef508bf623f901 100644\n--- a/tests/medication-interactions.test.ts\n+++ b/tests/medication-interactions.test.ts\n@@ -44,54 +44,84 @@ describe(\"evaluateMedicationInteractions\", () => {\n \n it(\"returns no matches for a patient list with nothing in common\", () => {\n const result = evaluateMedicationInteractions(\"sertraline\", [\"paracetamol\"]);\n expect(result.interactions).toHaveLength(0);\n expect(result.highestTone).toBeNull();\n });\n \n it(\"never reports a medication as interacting with itself\", () => {\n const result = evaluateMedicationInteractions(\"ibuprofen\", [\"ibuprofen\"]);\n expect(result.interactions.every((item) => item.counterpartySlug !== \"ibuprofen\")).toBe(true);\n });\n \n it(\"sorts the most severe interaction first\", () => {\n const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\", \"tramadol-ir\"]);\n expect(result.interactions.length).toBeGreaterThanOrEqual(2);\n expect(result.interactions[0]?.severity).toBe(\"critical\");\n });\n \n it(\"carries the unresolved row count for a medication the parser could not fully read\", () => {\n // Bupropion's CYP2D6-substrate row has no enumerable counterparty.\n const result = evaluateMedicationInteractions(\"bupropion-sr\", []);\n expect(result.unresolvedRowCount).toBeGreaterThan(0);\n expect(result.totalRowCount).toBeGreaterThanOrEqual(result.unresolvedRowCount);\n });\n \n- it(\"returns an empty result for an unknown slug rather than throwing\", () => {\n+ it(\"matches methadone's later CNS-depressant clause against diazepam\", () => {\n+ const result = evaluateMedicationInteractions(\"methadone\", [\"diazepam\"]);\n+ expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n+ expect(result.highestTone).toBe(\"danger\");\n+ });\n+\n+ it(\"matches cetirizine's sedative mechanism but keeps the row incomplete\", () => {\n+ const result = evaluateMedicationInteractions(\"cetirizine\", [\"diazepam\"]);\n+ expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);\n+ expect(result.unresolvedRowCount).toBeGreaterThan(0);\n+ });\n+\n+ it(\"finds a reverse naltrexone edge when considering buprenorphine-naloxone\", () => {\n+ const result = evaluateMedicationInteractions(\"buprenorphine-naloxone\", [\"naltrexone\"]);\n+ expect(result.interactions.some((item) => item.counterpartySlug === \"naltrexone\")).toBe(true);\n+ expect(result.highestTone).toBe(\"danger\");\n+ });\n+\n+ it(\"treats missing index data as incomplete rather than green\", () => {\n const result = evaluateMedicationInteractions(\"not-a-real-drug\", [\"sertraline\"]);\n expect(result.interactions).toHaveLength(0);\n expect(result.totalRowCount).toBe(0);\n+ expect(result.dataAvailable).toBe(false);\n+ expect(result.unresolvedRowCount).toBe(1);\n+ expect(\n+ composeMedicationVerdict({\n+ considerationTone: null,\n+ considerationCount: 0,\n+ unassessedCount: 0,\n+ interactionTone: result.highestTone,\n+ interactionCount: 0,\n+ unresolvedRowCount: result.unresolvedRowCount,\n+ }).tone,\n+ ).toBe(\"neutral\");\n expect(interactionRowCount(\"not-a-real-drug\")).toBe(0);\n });\n \n it(\"names counterparties from the index, falling back to the slug\", () => {\n expect(medicationDisplayName(\"tramadol-ir\")).toBe(\"Tramadol IR\");\n expect(medicationDisplayName(\"not-a-real-drug\")).toBe(\"not-a-real-drug\");\n });\n \n it(\"maps every severity to a tone, and never maps an unknown severity to success\", () => {\n expect(SEVERITY_TONE.critical).toBe(\"danger\");\n expect(SEVERITY_TONE.moderate).toBe(\"warning\");\n expect(SEVERITY_TONE.low).toBe(\"success\");\n expect(SEVERITY_TONE.unknown).toBe(\"neutral\");\n });\n });\n \n describe(\"composeMedicationVerdict\", () => {\n const base = {\n considerationTone: null,\n considerationCount: 0,\n unassessedCount: 0,\n interactionTone: null,\n interactionCount: 0,\n unresolvedRowCount: 0,\n };\ndiff --git a/tests/patient-details-dock-action.dom.test.tsx b/tests/patient-details-dock-action.dom.test.tsx\nindex a51a77c1689e99484ce3afe04f446441ed84f9c7..c70cf9d04c0521b83a3ddd860210540b2c8ca442 100644\n--- a/tests/patient-details-dock-action.dom.test.tsx\n+++ b/tests/patient-details-dock-action.dom.test.tsx\n@@ -42,55 +42,57 @@ beforeEach(() => {\n window.sessionStorage.clear();\n setPhoneViewport(true);\n });\n \n afterEach(() => {\n window.sessionStorage.clear();\n document.getElementById(patientDetailsAddonSlotId)?.remove();\n vi.unstubAllGlobals();\n });\n \n describe(\"PatientDetailsDockAction\", () => {\n it(\"portals into the dock's addon slot rather than positioning itself\", () => {\n const slot = mountSlot();\n renderAction();\n \n const action = screen.getByTestId(\"patient-details-dock-action\");\n expect(slot.contains(action)).toBe(true);\n });\n \n it(\"renders nothing when the dock exposes no slot\", () => {\n renderAction();\n expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n });\n \n it(\"renders nothing above the phone breakpoint, where the panel is already inline\", () => {\n+ const observe = vi.spyOn(MutationObserver.prototype, \"observe\");\n setPhoneViewport(false);\n mountSlot();\n renderAction();\n \n expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();\n+ expect(observe).not.toHaveBeenCalled();\n });\n \n it(\"is a real button that opens the patient sheet\", () => {\n mountSlot();\n renderAction();\n \n const action = screen.getByTestId(\"patient-details-dock-action\");\n expect(action).toHaveAttribute(\"type\", \"button\");\n expect(action).toHaveAttribute(\"aria-haspopup\", \"dialog\");\n expect(action).toHaveAttribute(\"aria-expanded\", \"false\");\n \n fireEvent.click(action);\n \n expect(screen.getByRole(\"dialog\", { name: \"Patient details\" })).toBeInTheDocument();\n expect(screen.getByTestId(\"patient-details-dock-action\")).toHaveAttribute(\"aria-expanded\", \"true\");\n });\n \n it(\"announces an empty profile without relying on the count badge\", () => {\n mountSlot();\n renderAction();\n \n expect(screen.getByText(\"No patient details entered\")).toBeInTheDocument();\n });\n \n it(\"counts every entered dimension, not just medications\", () => {\ndiff --git a/tests/patient-profile-medications.dom.test.tsx b/tests/patient-profile-medications.dom.test.tsx\nindex a478cb8e5dfaea64d8c8c1cb938413ba1b103428..82def92f6bc1248db1ecd4226f23c41c7ab85ab1 100644\n--- a/tests/patient-profile-medications.dom.test.tsx\n+++ b/tests/patient-profile-medications.dom.test.tsx\n@@ -1,27 +1,27 @@\n import { fireEvent, render, screen } from \"@testing-library/react\";\n-import { afterEach, beforeEach, describe, expect, it } from \"vitest\";\n+import { afterEach, beforeEach, describe, expect, it, vi } from \"vitest\";\n \n import { PatientProfileProvider } from \"@/components/clinical-dashboard/patient-profile-context\";\n import { PatientProfilePanel } from \"@/components/clinical-dashboard/patient-profile-panel\";\n import { isProfileEmpty } from \"@/lib/medication-patient-alerts\";\n import {\n PATIENT_PROFILE_MAX_MEDICATIONS,\n PATIENT_PROFILE_STORAGE_KEY,\n sanitizeMedicationSlugs,\n sanitizeProfile,\n } from \"@/lib/patient-profile-storage\";\n \n function renderPanel() {\n return render(\n \n \n ,\n );\n }\n \n function storedProfile(): Record {\n return JSON.parse(window.sessionStorage.getItem(PATIENT_PROFILE_STORAGE_KEY) ?? \"{}\");\n }\n \n beforeEach(() => {\n window.sessionStorage.clear();\n@@ -58,58 +58,60 @@ describe(\"current-medications picker\", () => {\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n fireEvent.click(screen.getByTestId(\"patient-medication-sertraline\"));\n \n expect(storedProfile().medications).toEqual([]);\n expect(screen.queryByTestId(\"patient-medication-sertraline\")).not.toBeInTheDocument();\n });\n \n it(\"gives the remove control a name that survives without the icon\", () => {\n renderPanel();\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n \n expect(screen.getByTestId(\"patient-medication-sertraline\")).toHaveAttribute(\"aria-label\", \"Remove Sertraline\");\n });\n \n it(\"offers nothing for a drug outside the catalogue, and says why\", () => {\n renderPanel();\n \n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"warfarinx\" } });\n \n expect(screen.getByText(/Only medications in this catalogue can be interaction-checked/i)).toBeInTheDocument();\n });\n \n it(\"drops the medication list and the search term on Clear\", () => {\n+ const consoleError = vi.spyOn(console, \"error\").mockImplementation(() => undefined);\n renderPanel();\n fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });\n fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));\n \n fireEvent.click(screen.getByRole(\"button\", { name: /clear/i }));\n \n expect(storedProfile().medications).toEqual([]);\n expect((screen.getByTestId(\"patient-medication-search\") as HTMLInputElement).value).toBe(\"\");\n+ expect(consoleError).not.toHaveBeenCalledWith(expect.stringContaining(\"Cannot update a component while rendering\"));\n });\n });\n \n describe(\"medication-list sanitisation\", () => {\n it(\"keeps well-formed slugs, de-duplicated and sorted\", () => {\n expect(sanitizeMedicationSlugs([\"sertraline\", \"aspirin\", \"sertraline\"])).toEqual([\"aspirin\", \"sertraline\"]);\n });\n \n it(\"rejects non-strings and malformed slugs rather than storing them\", () => {\n expect(sanitizeMedicationSlugs([1, null, {}, \"Not A Slug\", \"-leading\", \"has_underscore\", \"\"])).toEqual([]);\n });\n \n it(\"normalises case rather than dropping an otherwise valid slug\", () => {\n expect(sanitizeMedicationSlugs([\" Sertraline \"])).toEqual([\"sertraline\"]);\n });\n \n it(\"caps a corrupted list instead of evaluating it unbounded\", () => {\n const many = Array.from({ length: 200 }, (_, index) => `drug-${index}`);\n expect(sanitizeMedicationSlugs(many).length).toBeLessThanOrEqual(PATIENT_PROFILE_MAX_MEDICATIONS);\n });\n \n it(\"returns an empty list for a non-array value\", () => {\n expect(sanitizeMedicationSlugs(\"sertraline\")).toEqual([]);\n expect(sanitizeProfile({ medications: \"sertraline\" }).medications).toEqual([]);\n });\n","external_storage_diff",{"_4219":4220,"_4221":-5},"files_modified",10,"lines_added",833,"lines_removed",377,"commit_message","fix(medications): fail interaction checks closed","additional_parent_commit_shas",[],"file_id","file_0000000024a481f7bcfff9902415517f","ttl","partial_repo_snapshot","files",[4225,4226,4227,4228,4229,4230,4231],{"_173":5145,"_4233":-5,"_4234":5146,"_4236":-5},{"_173":4926,"_4233":-5,"_4234":4927,"_4236":-5},{"_173":4614,"_4233":-5,"_4234":4615,"_4236":-5},{"_173":4489,"_4233":-5,"_4234":4490,"_4236":-5},{"_173":4376,"_4233":-5,"_4234":4377,"_4236":-5},{"_173":4310,"_4233":-5,"_4234":4311,"_4236":-5},{"_173":4232,"_4233":-5,"_4234":4235,"_4236":-5},"tests/patient-profile-medications.dom.test.tsx","contents","line_range_contents",[4237],"missing_reason",{"_4238":1740,"_4239":4240,"_884":4241,"_4242":62},"line_range_start","line_range_end",125,[4243,4244,341,4245,4246,4247,4248,4249,4250,4251,4252,4253,341,4254,4255,4256,4257,4258,4259,4260,341,4261,4262,4260,341,4263,4264,4265,341,4266,4264,4265,341,4267,4268,4269,341,4270,4271,341,4272,4273,4274,341,4275,4269,4276,341,4277,4271,341,4278,4274,341,4279,4269,341,4270,4271,4280,341,4281,4282,4274,341,4283,4269,4270,4271,341,4284,4274,341,4285,4269,341,4286,341,4287,4274,341,4288,4289,4269,4270,4271,341,4290,341,4281,4291,4292,4274,4265,341,4293,4294,4295,4274,341,4296,4297,4274,341,4298,4299,4274,341,4300,4301,4302,4274,341,4303,4304,4305,4274,4265,341,4306,4307,4308,4309,4274,4265],"contains_end_of_file","import { fireEvent, render, screen } from \"@testing-library/react\";","import { afterEach, beforeEach, describe, expect, it, vi } from \"vitest\";","import { PatientProfileProvider } from \"@/components/clinical-dashboard/patient-profile-context\";","import { PatientProfilePanel } from \"@/components/clinical-dashboard/patient-profile-panel\";","import { isProfileEmpty } from \"@/lib/medication-patient-alerts\";","import {"," PATIENT_PROFILE_MAX_MEDICATIONS,"," PATIENT_PROFILE_STORAGE_KEY,"," sanitizeMedicationSlugs,"," sanitizeProfile,","} from \"@/lib/patient-profile-storage\";","function renderPanel() {"," return render("," "," "," ,"," );","}","function storedProfile(): Record {"," return JSON.parse(window.sessionStorage.getItem(PATIENT_PROFILE_STORAGE_KEY) ?? \"{}\");","beforeEach(() => {"," window.sessionStorage.clear();","});","afterEach(() => {","describe(\"current-medications picker\", () => {"," it(\"adds a catalogue medication and persists its slug\", () => {"," renderPanel();"," fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"sertral\" } });"," fireEvent.click(screen.getByTestId(\"patient-medication-add-sertraline\"));"," expect(storedProfile().medications).toEqual([\"sertraline\"]);"," expect(screen.getByTestId(\"patient-medication-sertraline\")).toBeInTheDocument();"," });"," it(\"clears the search box after adding, so the next drug starts fresh\", () => {"," const search = screen.getByTestId(\"patient-medication-search\") as HTMLInputElement;"," fireEvent.change(search, { target: { value: \"sertral\" } });"," expect(search.value).toBe(\"\");"," it(\"removes a medication when its chip is activated again\", () => {"," fireEvent.click(screen.getByTestId(\"patient-medication-sertraline\"));"," expect(storedProfile().medications).toEqual([]);"," expect(screen.queryByTestId(\"patient-medication-sertraline\")).not.toBeInTheDocument();"," it(\"gives the remove control a name that survives without the icon\", () => {"," expect(screen.getByTestId(\"patient-medication-sertraline\")).toHaveAttribute(\"aria-label\", \"Remove Sertraline\");"," it(\"offers nothing for a drug outside the catalogue, and says why\", () => {"," fireEvent.change(screen.getByTestId(\"patient-medication-search\"), { target: { value: \"warfarinx\" } });"," expect(screen.getByText(/Only medications in this catalogue can be interaction-checked/i)).toBeInTheDocument();"," it(\"drops the medication list and the search term on Clear\", () => {"," const consoleError = vi.spyOn(console, \"error\").mockImplementation(() => undefined);"," fireEvent.click(screen.getByRole(\"button\", { name: /clear/i }));"," expect((screen.getByTestId(\"patient-medication-search\") as HTMLInputElement).value).toBe(\"\");"," expect(consoleError).not.toHaveBeenCalledWith(expect.stringContaining(\"Cannot update a component while rendering\"));","describe(\"medication-list sanitisation\", () => {"," it(\"keeps well-formed slugs, de-duplicated and sorted\", () => {"," expect(sanitizeMedicationSlugs([\"sertraline\", \"aspirin\", \"sertraline\"])).toEqual([\"aspirin\", \"sertraline\"]);"," it(\"rejects non-strings and malformed slugs rather than storing them\", () => {"," expect(sanitizeMedicationSlugs([1, null, {}, \"Not A Slug\", \"-leading\", \"has_underscore\", \"\"])).toEqual([]);"," it(\"normalises case rather than dropping an otherwise valid slug\", () => {"," expect(sanitizeMedicationSlugs([\" Sertraline \"])).toEqual([\"sertraline\"]);"," it(\"caps a corrupted list instead of evaluating it unbounded\", () => {"," const many = Array.from({ length: 200 }, (_, index) => `drug-${index}`);"," expect(sanitizeMedicationSlugs(many).length).toBeLessThanOrEqual(PATIENT_PROFILE_MAX_MEDICATIONS);"," it(\"returns an empty list for a non-array value\", () => {"," expect(sanitizeMedicationSlugs(\"sertraline\")).toEqual([]);"," expect(sanitizeProfile({ medications: \"sertraline\" }).medications).toEqual([]);","describe(\"isProfileEmpty\", () => {"," it(\"treats a medication list as a populated profile\", () => {"," expect(isProfileEmpty({ medications: [] })).toBe(true);"," expect(isProfileEmpty({ medications: [\"sertraline\"] })).toBe(false);","tests/patient-details-dock-action.dom.test.tsx",[4312],{"_4238":1740,"_4239":1219,"_884":4313,"_4242":62},[4243,4244,341,4314,4245,4315,4316,341,4317,4318,4319,4320,4321,4322,4260,341,4323,4324,4325,4326,4327,4328,4329,4330,4331,4332,4333,4334,4335,4259,4260,341,4336,4255,4256,4337,4258,4259,4260,341,4263,4264,4338,4265,341,4266,4264,4339,4340,4265,341,4341,4342,4343,4344,341,4345,4346,4274,341,4347,4344,4348,4274,341,4349,4350,4351,4352,4344,341,4348,4353,4274,341,4354,4352,4344,341,4345,4355,4356,4357,341,4358,341,4359,4360,4274,341,4361,4352,4344,341,4362,4274,341,4363,4364,4365,4366,4367,4352,4344,341,4368,4369,4274,341,4370,4371,4352,4344,341,4372,4373,4367,4274,341,4374,4352,4344,341,4375,4373,4367,4274,4265],"import { PatientDetailsDockAction } from \"@/components/clinical-dashboard/patient-details-dock-action\";","import { patientDetailsAddonSlotId } from \"@/lib/mode-home-composer\";","import { PATIENT_PROFILE_STORAGE_KEY } from \"@/lib/patient-profile-storage\";","/** Stand in for the phone dock's addon slot, which MasterSearchHeader renders. */","function mountSlot(): HTMLElement {"," const slot = document.createElement(\"div\");"," slot.id = patientDetailsAddonSlotId;"," document.body.append(slot);"," return slot;","function setPhoneViewport(isPhone: boolean) {"," vi.stubGlobal("," \"matchMedia\","," vi.fn().mockImplementation((query: string) => ({"," matches: isPhone,"," media: query,"," onchange: null,"," addEventListener: vi.fn(),"," removeEventListener: vi.fn(),"," addListener: vi.fn(),"," removeListener: vi.fn(),"," dispatchEvent: vi.fn(),"," })),","function renderAction() {"," "," setPhoneViewport(true);"," document.getElementById(patientDetailsAddonSlotId)?.remove();"," vi.unstubAllGlobals();","describe(\"PatientDetailsDockAction\", () => {"," it(\"portals into the dock's addon slot rather than positioning itself\", () => {"," const slot = mountSlot();"," renderAction();"," const action = screen.getByTestId(\"patient-details-dock-action\");"," expect(slot.contains(action)).toBe(true);"," it(\"renders nothing when the dock exposes no slot\", () => {"," expect(screen.queryByTestId(\"patient-details-dock-action\")).not.toBeInTheDocument();"," it(\"renders nothing above the phone breakpoint, where the panel is already inline\", () => {"," const observe = vi.spyOn(MutationObserver.prototype, \"observe\");"," setPhoneViewport(false);"," mountSlot();"," expect(observe).not.toHaveBeenCalled();"," it(\"is a real button that opens the patient sheet\", () => {"," expect(action).toHaveAttribute(\"type\", \"button\");"," expect(action).toHaveAttribute(\"aria-haspopup\", \"dialog\");"," expect(action).toHaveAttribute(\"aria-expanded\", \"false\");"," fireEvent.click(action);"," expect(screen.getByRole(\"dialog\", { name: \"Patient details\" })).toBeInTheDocument();"," expect(screen.getByTestId(\"patient-details-dock-action\")).toHaveAttribute(\"aria-expanded\", \"true\");"," it(\"announces an empty profile without relying on the count badge\", () => {"," expect(screen.getByText(\"No patient details entered\")).toBeInTheDocument();"," it(\"counts every entered dimension, not just medications\", () => {"," window.sessionStorage.setItem("," PATIENT_PROFILE_STORAGE_KEY,"," JSON.stringify({ ageYears: 70, medications: [\"sertraline\", \"aspirin\"], allergies: [\"penicillin\"] }),"," );"," // age + 2 medications + 1 allergy"," expect(screen.getByText(\"4 details entered\")).toBeInTheDocument();"," it(\"takes the accent treatment once a profile is loaded\", () => {"," window.sessionStorage.setItem(PATIENT_PROFILE_STORAGE_KEY, JSON.stringify({ medications: [\"sertraline\"] }));"," expect(screen.getByTestId(\"patient-details-dock-action\").className).toContain("," \"patient-details-fab__button--active\","," it(\"stays visually quiet while the profile is empty\", () => {"," expect(screen.getByTestId(\"patient-details-dock-action\").className).not.toContain(","tests/medication-interactions.test.ts",[4378],{"_4238":1740,"_4239":4379,"_884":4380,"_4242":62},163,[4381,341,4382,4248,4383,4384,4385,4386,4387,4388,341,4389,4390,4391,4392,4393,4394,4395,4396,4397,4274,341,4398,4399,4400,4401,4402,4403,4396,4274,341,4404,4405,4406,4407,4408,4274,341,4409,4410,4393,4411,4274,341,4412,4413,4414,4415,4274,341,4416,4417,4418,4274,341,4419,4420,4421,4395,4274,341,4422,4423,4424,4425,4426,4274,341,4427,4428,4429,4397,4274,341,4430,4431,4429,4425,4274,341,4432,4433,4434,4397,4274,341,4435,4436,4414,4437,4438,4439,4440,4441,4442,4443,4444,4445,4446,4447,4448,4449,4450,4274,341,4451,4452,4453,4274,341,4454,4455,4456,4457,4458,4274,4265,341,4459,4460,4461,4462,4463,4464,4465,4466,4467,341,4468,4469,4470,4274,341,4471,4472,4473,4474,4274,341,4475,4476,4274,341,4477,4478,4479,4480,4481,4482,4483,4484,4474,4274,341,4485,4486,4487,4367,4488,4487,4367,4274,4265],"import { describe, expect, it } from \"vitest\";","import { getMedicationRecord } from \"@/lib/medication-snapshot\";"," composeMedicationVerdict,"," evaluateMedicationInteractions,"," interactionRowCount,"," medicationDisplayName,"," SEVERITY_TONE,","} from \"@/lib/medication-interactions\";","describe(\"evaluateMedicationInteractions\", () => {"," it(\"matches a drug named outright in the counterparty sentence\", () => {"," // Sertraline's CRITICAL row: \"MAOIs, Tramadol, Tapentadol, St John's Wort.\""," const result = evaluateMedicationInteractions(\"sertraline\", [\"tramadol-ir\"]);"," expect(result.interactions).toHaveLength(1);"," expect(result.interactions[0]?.counterpartySlug).toBe(\"tramadol-ir\");"," expect(result.interactions[0]?.severity).toBe(\"critical\");"," expect(result.interactions[0]?.tone).toBe(\"danger\");"," expect(result.highestTone).toBe(\"danger\");"," it(\"matches through a resolved class term\", () => {"," // The same row names \"MAOIs\"; phenelzine is reached via the class, not by name."," const result = evaluateMedicationInteractions(\"sertraline\", [\"phenelzine\"]);"," expect(result.interactions[0]?.counterpartySlug).toBe(\"phenelzine\");"," expect(result.interactions[0]?.counterpartyName).toBe(\"Phenelzine\");"," expect(result.interactions[0]?.matchedTerms).toContain(\"maois\");"," it(\"renders the verbatim catalogue row text when given the record\", () => {"," const record = getMedicationRecord(\"sertraline\");"," const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\"], record);"," expect(result.interactions[0]?.note).toContain(\"NSAIDs\");"," expect(result.interactions[0]?.note).toMatch(/^(HIGH|CRITICAL)/);"," it(\"still reports the interaction without a record, just with no note text\", () => {"," const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\"]);"," expect(result.interactions[0]?.note).toBe(\"\");"," it(\"returns no matches for a patient list with nothing in common\", () => {"," const result = evaluateMedicationInteractions(\"sertraline\", [\"paracetamol\"]);"," expect(result.interactions).toHaveLength(0);"," expect(result.highestTone).toBeNull();"," it(\"never reports a medication as interacting with itself\", () => {"," const result = evaluateMedicationInteractions(\"ibuprofen\", [\"ibuprofen\"]);"," expect(result.interactions.every((item) => item.counterpartySlug !== \"ibuprofen\")).toBe(true);"," it(\"sorts the most severe interaction first\", () => {"," const result = evaluateMedicationInteractions(\"sertraline\", [\"ibuprofen\", \"tramadol-ir\"]);"," expect(result.interactions.length).toBeGreaterThanOrEqual(2);"," it(\"carries the unresolved row count for a medication the parser could not fully read\", () => {"," // Bupropion's CYP2D6-substrate row has no enumerable counterparty."," const result = evaluateMedicationInteractions(\"bupropion-sr\", []);"," expect(result.unresolvedRowCount).toBeGreaterThan(0);"," expect(result.totalRowCount).toBeGreaterThanOrEqual(result.unresolvedRowCount);"," it(\"matches methadone's later CNS-depressant clause against diazepam\", () => {"," const result = evaluateMedicationInteractions(\"methadone\", [\"diazepam\"]);"," expect(result.interactions.some((item) => item.counterpartySlug === \"diazepam\")).toBe(true);"," it(\"matches cetirizine's sedative mechanism but keeps the row incomplete\", () => {"," const result = evaluateMedicationInteractions(\"cetirizine\", [\"diazepam\"]);"," it(\"finds a reverse naltrexone edge when considering buprenorphine-naloxone\", () => {"," const result = evaluateMedicationInteractions(\"buprenorphine-naloxone\", [\"naltrexone\"]);"," expect(result.interactions.some((item) => item.counterpartySlug === \"naltrexone\")).toBe(true);"," it(\"treats missing index data as incomplete rather than green\", () => {"," const result = evaluateMedicationInteractions(\"not-a-real-drug\", [\"sertraline\"]);"," expect(result.totalRowCount).toBe(0);"," expect(result.dataAvailable).toBe(false);"," expect(result.unresolvedRowCount).toBe(1);"," expect("," composeMedicationVerdict({"," considerationTone: null,"," considerationCount: 0,"," unassessedCount: 0,"," interactionTone: result.highestTone,"," interactionCount: 0,"," unresolvedRowCount: result.unresolvedRowCount,"," }).tone,"," ).toBe(\"neutral\");"," expect(interactionRowCount(\"not-a-real-drug\")).toBe(0);"," it(\"names counterparties from the index, falling back to the slug\", () => {"," expect(medicationDisplayName(\"tramadol-ir\")).toBe(\"Tramadol IR\");"," expect(medicationDisplayName(\"not-a-real-drug\")).toBe(\"not-a-real-drug\");"," it(\"maps every severity to a tone, and never maps an unknown severity to success\", () => {"," expect(SEVERITY_TONE.critical).toBe(\"danger\");"," expect(SEVERITY_TONE.moderate).toBe(\"warning\");"," expect(SEVERITY_TONE.low).toBe(\"success\");"," expect(SEVERITY_TONE.unknown).toBe(\"neutral\");","describe(\"composeMedicationVerdict\", () => {"," const base = {"," considerationTone: null,"," considerationCount: 0,"," unassessedCount: 0,"," interactionTone: null,"," interactionCount: 0,"," unresolvedRowCount: 0,"," };"," it(\"is green when both engines ran clean\", () => {"," expect(composeMedicationVerdict(base).tone).toBe(\"success\");"," expect(composeMedicationVerdict(base).incomplete).toBe(false);"," it(\"degrades green to grey when an interaction row could not be resolved\", () => {"," const verdict = composeMedicationVerdict({ ...base, unresolvedRowCount: 2 });"," expect(verdict.tone).toBe(\"neutral\");"," expect(verdict.incomplete).toBe(true);"," it(\"degrades green to grey when a physiology gate was unassessed\", () => {"," expect(composeMedicationVerdict({ ...base, unassessedCount: 1 }).tone).toBe(\"neutral\");"," it(\"keeps danger even when data is incomplete — a real finding outranks the caveat\", () => {"," const verdict = composeMedicationVerdict({"," ...base,"," interactionTone: \"danger\","," interactionCount: 1,"," unresolvedRowCount: 3,"," });"," expect(verdict.tone).toBe(\"danger\");"," it(\"takes the highest tone across both engines\", () => {"," expect(composeMedicationVerdict({ ...base, considerationTone: \"warning\", interactionTone: \"danger\" }).tone).toBe("," \"danger\","," expect(composeMedicationVerdict({ ...base, considerationTone: \"danger\", interactionTone: \"warning\" }).tone).toBe(","src/components/clinical-dashboard/patient-details-dock-action.tsx",[4491],{"_4238":1740,"_4239":4492,"_884":4493,"_4242":62},139,[4494,341,4495,4496,4497,341,4246,4498,4499,4500,4315,341,4501,4502,4503,4504,4505,4506,4507,4508,4509,4504,4510,4511,4512,4513,4514,4515,4516,4517,4518,341,4519,4520,4521,4522,4523,4524,4525,4526,4527,4528,4529,4530,4531,4532,4528,4533,4534,4535,4536,4537,4538,4539,4540,4533,4541,341,4542,4543,4544,341,4545,4546,4547,4548,4549,4550,4551,4552,4553,4554,4555,4259,341,4556,4557,4558,4559,4560,4561,341,4562,4563,4564,4565,4566,4567,4568,4569,4570,4571,4572,4573,4574,4575,4576,4577,4578,4579,4580,4581,4582,4583,4584,4585,4586,4587,4588,4589,4590,4591,4259,4260,341,4592,4593,4594,4595,4596,4597,4598,4599,4600,4601,4602,4603,4604,4605,4606,4607,4561,4608,4609,4610,4611,4612,4613,4260],"\"use client\";","import { ChevronRight, UserRound } from \"lucide-react\";","import { useEffect, useState } from \"react\";","import { createPortal } from \"react-dom\";","import { usePatientProfile } from \"@/components/clinical-dashboard/patient-profile-context\";","import { Sheet } from \"@/components/ui/sheet\";","import { cn } from \"@/components/ui-primitives\";","/**"," * The phone \"Patient details\" pill, docked above the search composer on the"," * medication and prescribing surfaces."," *"," * It is NOT independently fixed-positioned. Like the Differentials Compare bar"," * it portals into a slot *inside* the phone dock's form, so it inherits the"," * dock's `position: fixed`, z-index, safe-area padding and — the point of the"," * exercise — its scroll-hide transform. There is no bottom-offset arithmetic"," * here and no second scroll listener; the composer hides, this hides with it."," * The media query is 639px to match the dock (`.phone-footer-layer` is"," * `sm:fixed`), deliberately NOT the 1023px the two Compare bars use. Their"," * wider gate means that between 640px and 1023px they render into a slot on a"," * form that is not fixed — a latent bug this component does not copy."," */","export function PatientDetailsDockAction() {"," const { profile, isEmpty } = usePatientProfile();"," const [host, setHost] = useState(null);"," const [open, setOpen] = useState(false);"," useEffect(() => {"," const phoneMediaQuery = window.matchMedia(\"(max-width: 639px)\");"," let observer: MutationObserver | null = null;"," const sync = () => {"," if (!phoneMediaQuery.matches) {"," observer?.disconnect();"," observer = null;"," setHost(null);"," return;"," }"," setHost(document.getElementById(patientDetailsAddonSlotId));"," if (!observer) {"," observer = new MutationObserver(sync);"," observer.observe(document.body, { childList: true, subtree: true });"," };"," sync();"," phoneMediaQuery.addEventListener(\"change\", sync);"," // The dock (and therefore the slot) mounts and unmounts with the composer,"," // so watch for it rather than assuming it exists on first paint."," return () => {"," phoneMediaQuery.removeEventListener(\"change\", sync);"," observer?.disconnect();"," }, []);"," // Count the entered dimensions, not just the medications, so the badge means"," // \"how much context is loaded\" rather than \"how many drugs\"."," const enteredCount = countEnteredFields(profile);"," const sheet = ("," setOpen(false)}"," title=\"Patient details\""," description=\"Anonymous physiology and current medications. Cleared when the tab closes.\""," mobilePlacement=\"bottom\""," testId=\"patient-details-sheet\""," >"," "," "," if (!host) {"," // Above the phone breakpoint the panel is already inline on these surfaces,"," // so there is nothing to render — but keep the sheet mounted if it is open"," // so a resize mid-edit does not drop the dialog and the focus with it."," return open ? sheet : null;"," }"," return ("," <>"," {createPortal(","
"," setOpen(true)}"," data-testid=\"patient-details-dock-action\""," aria-haspopup=\"dialog\""," aria-expanded={open}"," className={cn(\"patient-details-fab__button\", !isEmpty && \"patient-details-fab__button--active\")}"," >"," "," Patient details"," {enteredCount > 0 ? ("," "," {enteredCount}"," "," ) : null}"," {/* The count is decorative; the real state goes to assistive tech here. */}"," "," {isEmpty ? \"No patient details entered\" : `${enteredCount} details entered`}"," "," "," ","
,"," host,"," )}"," {sheet}"," ","/** How many profile dimensions carry a value. Drives the pill's count badge. */","function countEnteredFields(profile: {"," ageYears?: number | null;"," egfr?: number | null;"," crcl?: number | null;"," scr?: number | null;"," qtc?: number | null;"," hepatic?: string | null;"," pregnant?: boolean;"," breastfeeding?: boolean;"," allergies?: string[];"," medications?: string[];","}): number {"," let count = 0;"," for (const value of [profile.ageYears, profile.egfr, profile.crcl, profile.scr, profile.qtc]) {"," if (typeof value === \"number\" && Number.isFinite(value)) count += 1;"," if (profile.hepatic && profile.hepatic !== \"none\") count += 1;"," if (profile.pregnant) count += 1;"," if (profile.breastfeeding) count += 1;"," count += profile.allergies?.length ?? 0;"," count += profile.medications?.length ?? 0;"," return count;","src/components/clinical-dashboard/patient-profile-panel.tsx",[4616],{"_4238":1740,"_4239":4617,"_884":4618,"_4242":62},388,[4494,341,4619,4620,341,4498,4621,4622,4623,4624,4625,4626,4627,341,4628,4629,4630,4631,4632,4633,341,4634,4635,4636,4633,341,4637,4638,4639,4640,4641,4642,4643,4633,341,4644,4645,4646,4647,4648,4260,341,4649,4650,4651,4652,4653,4654,341,4655,4656,4657,4658,4659,4660,4661,4662,4663,4664,4665,4666,4667,4668,4669,4670,4671,4672,4673,341,4674,4675,4676,4677,4678,4679,4680,4681,4682,4683,4561,341,4684,4685,4686,4562,4687,4688,4689,4690,4691,4692,4693,4694,4695,4696,4697,4698,4699,4700,4701,4702,4703,4704,4705,4706,4259,4260,341,4501,4707,4504,4708,4709,4710,4711,4514,4712,4713,4714,341,4715,4716,4717,4718,4719,4720,341,4562,4721,4722,341,4723,4724,4725,4726,4727,4728,4729,4730,4731,4732,4733,4734,4735,4736,4737,4738,4739,4740,341,4741,4742,4743,4744,4745,4746,4747,4748,4749,341,4750,4751,4566,4752,4567,4753,4754,4755,4756,4757,4758,4573,4759,4760,4586,4761,4762,4763,4764,4765,4766,4767,4768,4259,4260,341,4769,4770,4771,4772,4663,4773,4774,4775,4776,4671,4777,4778,4779,4780,4781,4782,341,4783,4784,4785,4786,4787,4788,4789,4790,4791,4792,4793,341,4562,4794,4547,4795,4796,4797,4798,4799,4589,4553,4800,4801,4802,4803,4804,4805,4806,4584,4807,4808,4809,4810,4811,4812,4810,4813,341,4814,4815,4816,4817,4818,4819,4820,4821,4822,4823,4824,4825,4816,4826,4827,4828,4829,4830,4831,4832,4833,4825,4816,4834,4835,4828,4836,4837,4838,4839,4840,4825,4816,4841,4842,4843,4844,4845,4846,4847,4848,4825,4849,4850,4851,4852,4853,4854,4855,4856,4857,4858,4859,4860,4861,4862,4584,4863,4864,4865,4866,4867,4868,4858,4859,4869,341,4870,4871,4872,4873,4874,4875,4876,4877,4878,4879,4825,4869,341,4880,4881,4882,4883,4884,341,4885,4886,4887,4888,4889,4890,4891,4892,4893,4894,4895,4896,4897,4898,4899,4900,4901,4902,4859,4903,341,4904,4905,4906,4907,4908,4909,4858,4910,4873,4905,4906,4911,4912,4913,4858,4914,4873,4566,4567,4753,4915,4916,4756,4917,4918,4573,4919,4920,4586,4869,341,4921,4922,4923,4924,4767,4925,4259,4260],"import { Eraser, Plus, UserRound, X } from \"lucide-react\";","import { useId, useState } from \"react\";","import { SegmentedControl } from \"@/components/ui/segmented-control\";","import { TextField } from \"@/components/ui/text-field\";","import { cn, fieldLabel, ToggleSwitch } from \"@/components/ui-primitives\";","import { catalogueMedicationOptions, medicationDisplayName } from \"@/lib/medication-interactions\";","import { SCR_UMOL_PER_MGDL } from \"@/lib/medication-patient-alerts\";","import type { AllergyClass, HepaticSeverity, ScrUnit } from \"@/lib/medication-patient-alerts\";","import { PATIENT_PROFILE_NUMERIC_BOUNDS, PATIENT_PROFILE_SCR_UMOL_BOUNDS } from \"@/lib/patient-profile-storage\";","const HEPATIC_OPTIONS: { value: HepaticSeverity; label: string }[] = ["," { value: \"none\", label: \"None\" },"," { value: \"mild\", label: \"Mild\" },"," { value: \"moderate\", label: \"Moderate\" },"," { value: \"severe\", label: \"Severe\" },","];","const SCR_UNIT_OPTIONS: { value: ScrUnit; label: string }[] = ["," { value: \"umol/L\", label: \"µmol/L\" },"," { value: \"mg/dL\", label: \"mg/dL\" },","const ALLERGY_OPTIONS: { value: AllergyClass; label: string }[] = ["," { value: \"penicillin\", label: \"Penicillin\" },"," { value: \"sulfa\", label: \"Sulfa\" },"," { value: \"nsaid\", label: \"NSAID\" },"," { value: \"cephalosporin\", label: \"Cephalosporin\" },"," { value: \"macrolide\", label: \"Macrolide\" },"," { value: \"fluoroquinolone\", label: \"Fluoroquinolone\" },","function parseNumber(value: string): number | null {"," const trimmed = value.trim();"," if (!trimmed) return null;"," const parsed = Number(trimmed);"," return Number.isFinite(parsed) ? parsed : null;","const segmentBase ="," \"min-h-tap rounded-lg border px-2.5 text-2xs font-semibold transition focus-visible:outline focus-visible:outline-2 focus-visible:outline-offset-2 focus-visible:outline-[color:var(--focus)] sm:text-xs\";","const segmentActive ="," \"border-[color:var(--clinical-accent)] bg-[color:var(--clinical-accent-soft)] text-[color:var(--clinical-accent)]\";","const segmentIdle ="," \"border-[color:var(--border)] bg-[color:var(--surface-raised)] text-[color:var(--text-muted)] hover:border-[color:var(--border-strong)] hover:text-[color:var(--text-heading)]\";","function NumberField({"," label,"," unit,"," value,"," onChange,"," testId,"," min,"," max,","}: {"," label: string;"," unit?: string;"," value: number | null | undefined;"," onChange: (value: number | null) => void;"," testId?: string;"," min: number;"," max: number;","}) {"," const [text, setText] = useState(value == null ? \"\" : String(value));"," const [syncedValue, setSyncedValue] = useState(value ?? null);"," // React-sanctioned \"adjust state during render\" reconciliation: when the stored"," // value changes from outside this field (e.g. a cross-page store update), re-sync"," // the buffer — but keep an in-progress out-of-range entry so its validation"," // message stays visible. A profile Clear remounts the field via `key` instead"," // (the stored value is already null there, so no prop change would fire here)."," const parsed = parseNumber(text);"," const outOfRange = parsed !== null && (parsed < min || parsed > max);"," if ((value ?? null) !== syncedValue) {"," setSyncedValue(value ?? null);"," if (!outOfRange) setText(value == null ? \"\" : String(value));"," // The unit rides in the label string rather than a styled span: `FormField`"," // takes a string label so the whole accessible name is one readable phrase"," // (\"Serum creatinine (µmol/L)\") instead of a name assembled from two nodes."," {"," const raw = event.target.value;"," setText(raw);"," // Commit only in-range numbers; an empty or out-of-range entry commits"," // null so the alert engine treats it as a missing input (surfaced as"," // \"unassessed\") rather than acting on a physiologically impossible value."," const next = parseNumber(raw);"," onChange(next !== null && next >= min && next <= max ? next : null);"," }}"," error={outOfRange ? `Enter ${min}–${max}${unit ? ` ${unit}` : \"\"}.` : undefined}"," className=\"nums\""," data-testid={testId}"," />"," * Search-and-add list of what the patient is currently taking."," * Restricted to catalogue medications on purpose: an interaction can only be"," * checked against a drug the catalogue actually carries, so accepting free text"," * would let a clinician enter \"warfarin\", see no alert, and read that as an"," * all-clear when nothing was ever checked.","function MedicationPicker({ selected, onToggle }: { selected: string[]; onToggle: (slug: string) => void }) {"," const [term, setTerm] = useState(\"\");"," const listId = useId();"," const options = catalogueMedicationOptions();"," const selectedSet = new Set(selected);"," const query = term.trim().toLowerCase();"," const matches = query"," ? options.filter((option) => option.name.toLowerCase().includes(query) && !selectedSet.has(option.slug)).slice(0, 8)"," : [];","
"," Current medications"," {selected.length > 0 ? (","
"," {selected.map((slug) => (","
"," onToggle(slug)}"," data-testid={`patient-medication-${slug}`}"," aria-label={`Remove ${medicationDisplayName(slug)}`}"," className={cn(segmentBase, segmentActive, \"inline-flex items-center gap-1.5\")}"," >"," {medicationDisplayName(slug)}"," "," ","
"," ))}","
"," ) : null}"," setTerm(event.target.value)}"," placeholder=\"Search medications to add…\""," aria-describedby={listId}"," data-testid=\"patient-medication-search\""," />","
"," {matches.map((option) => ("," key={option.slug}"," onClick={() => {"," onToggle(option.slug);"," setTerm(\"\");"," }}"," data-testid={`patient-medication-add-${option.slug}`}"," className={cn(segmentBase, segmentIdle, \"inline-flex items-center gap-1.5\")}"," "," {option.name}"," ))}"," {query && matches.length === 0 ? (","
"," No catalogue match. Only medications in this catalogue can be interaction-checked.","
"," ) : null}","
","
","export function PatientProfilePanel({"," variant = \"full\","," defaultOpen,"," className,"," variant?: \"full\" | \"compact\";"," /** Initial expanded state; falls back to `variant === \"full\"` when omitted. */"," defaultOpen?: boolean;"," className?: string;"," const { profile, updateField, setScrUnit, toggleAllergy, toggleMedication, clear, isEmpty } = usePatientProfile();"," const [open, setOpen] = useState(defaultOpen ?? variant === \"full\");"," // Bumped on Clear to remount the numeric fields, so an out-of-range entry that"," // is showing a validation message (stored value already null) is reset too."," const [resetNonce, setResetNonce] = useState(0);"," const allergies = new Set(profile.allergies ?? []);"," // Serum-creatinine validity bounds are canonical in µmol/L; convert to the"," // active display unit (rounding inward so the field and the storage-layer"," // check agree on the edge). Same conversion factor the alert engine uses."," const scrUnit = profile.scrUnit ?? \"umol/L\";"," const scrBounds ="," scrUnit === \"mg/dL\""," ? {"," min: Math.ceil((PATIENT_PROFILE_SCR_UMOL_BOUNDS.min / SCR_UMOL_PER_MGDL) * 100) / 100,"," max: Math.floor((PATIENT_PROFILE_SCR_UMOL_BOUNDS.max / SCR_UMOL_PER_MGDL) * 100) / 100,"," }"," : PATIENT_PROFILE_SCR_UMOL_BOUNDS;"," setOpen((event.currentTarget as HTMLDetailsElement).open)}"," data-testid=\"patient-profile-panel\""," className={cn("," \"group overflow-hidden rounded-lg border border-[color:var(--border)] bg-[color:var(--surface-raised)] shadow-[var(--shadow-inset)]\","," className,","
"," "," "," Patient details"," {!isEmpty ? ("," "," Active"," ) : ("," Optional"," )}"," "," "," {open ? \"Hide\" : \"Edit\"}","
","
","
"," updateField(\"ageYears\", value)}"," testId=\"patient-age\""," min={PATIENT_PROFILE_NUMERIC_BOUNDS.ageYears.min}"," max={PATIENT_PROFILE_NUMERIC_BOUNDS.ageYears.max}"," />"," key={`egfr-${resetNonce}`}"," label=\"eGFR\""," unit=\"mL/min\""," value={profile.egfr}"," onChange={(value) => updateField(\"egfr\", value)}"," testId=\"patient-egfr\""," min={PATIENT_PROFILE_NUMERIC_BOUNDS.egfr.min}"," max={PATIENT_PROFILE_NUMERIC_BOUNDS.egfr.max}"," key={`crcl-${resetNonce}`}"," label=\"CrCl\""," value={profile.crcl}"," onChange={(value) => updateField(\"crcl\", value)}"," testId=\"patient-crcl\""," min={PATIENT_PROFILE_NUMERIC_BOUNDS.crcl.min}"," max={PATIENT_PROFILE_NUMERIC_BOUNDS.crcl.max}"," key={`qtc-${resetNonce}`}"," label=\"QTc\""," unit=\"ms\""," value={profile.qtc}"," onChange={(value) => updateField(\"qtc\", value)}"," testId=\"patient-qtc\""," min={PATIENT_PROFILE_NUMERIC_BOUNDS.qtc.min}"," max={PATIENT_PROFILE_NUMERIC_BOUNDS.qtc.max}","
"," updateField(\"scr\", value)}"," testId=\"patient-scr\""," min={scrBounds.min}"," max={scrBounds.max}"," />","
","
"," "," Creatinine unit"," ","
"," "," Hepatic impairment"," "," updateField(\"hepatic\", value === \"none\" ? null : value)}"," options={HEPATIC_OPTIONS}"," layout=\"fit\""," ","
"," Allergies","
"," {ALLERGY_OPTIONS.map